Query 022805
Match_columns 292
No_of_seqs 245 out of 1506
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgk_A Phytoene dehydrogenase; 100.0 4.4E-33 1.5E-37 270.3 15.4 177 93-280 301-490 (501)
2 3ka7_A Oxidoreductase; structu 99.4 8.3E-13 2.8E-17 124.7 12.4 143 97-279 280-425 (425)
3 3nrn_A Uncharacterized protein 98.9 1.6E-08 5.3E-13 95.6 13.4 138 91-277 263-403 (421)
4 1b37_A Protein (polyamine oxid 97.9 1.5E-06 5.2E-11 83.3 0.7 91 183-280 362-457 (472)
5 1sez_A Protoporphyrinogen oxid 97.9 6.9E-07 2.3E-11 86.1 -2.4 119 141-280 374-492 (504)
6 2ivd_A PPO, PPOX, protoporphyr 97.9 8.3E-07 2.8E-11 84.8 -2.4 120 137-280 350-472 (478)
7 1s3e_A Amine oxidase [flavin-c 97.9 2.2E-06 7.6E-11 83.2 0.3 88 183-280 357-453 (520)
8 2yg5_A Putrescine oxidase; oxi 97.8 5.9E-06 2E-10 78.3 1.9 87 183-279 355-449 (453)
9 2jae_A L-amino acid oxidase; o 97.7 1.2E-05 4E-10 77.2 3.1 91 183-279 384-483 (489)
10 2bcg_G Secretory pathway GDP d 97.4 0.00029 1E-08 67.3 8.3 130 94-281 309-441 (453)
11 1d5t_A Guanine nucleotide diss 97.1 0.0016 5.3E-08 61.9 8.9 114 116-281 317-430 (433)
12 3i6d_A Protoporphyrinogen oxid 96.4 0.0028 9.4E-08 59.6 4.8 114 145-279 352-466 (470)
13 2iid_A L-amino-acid oxidase; f 96.1 0.00035 1.2E-08 67.0 -2.8 126 136-280 353-483 (498)
14 3lov_A Protoporphyrinogen oxid 95.5 0.042 1.4E-06 51.9 8.9 37 244-281 429-465 (475)
15 3qj4_A Renalase; FAD/NAD(P)-bi 95.4 0.035 1.2E-06 50.1 7.5 78 183-279 259-340 (342)
16 3kkj_A Amine oxidase, flavin-c 94.0 0.027 9.2E-07 46.7 2.7 35 244-279 291-325 (336)
17 3nks_A Protoporphyrinogen oxid 92.9 0.06 2.1E-06 50.7 3.6 34 247-281 441-474 (477)
18 4dsg_A UDP-galactopyranose mut 92.6 0.15 5.1E-06 48.9 5.9 151 96-278 296-452 (484)
19 3nlc_A Uncharacterized protein 87.6 0.18 6.3E-06 49.4 1.7 37 244-280 504-541 (549)
20 3k7m_X 6-hydroxy-L-nicotine ox 87.6 0.55 1.9E-05 43.4 4.9 82 189-281 339-426 (431)
21 2e1m_C L-glutamate oxidase; L- 85.7 0.54 1.8E-05 39.1 3.4 86 185-280 58-151 (181)
22 2vvm_A Monoamine oxidase N; FA 84.1 0.57 2E-05 44.3 3.2 37 244-280 446-484 (495)
23 1yvv_A Amine oxidase, flavin-c 83.5 0.67 2.3E-05 41.0 3.2 36 245-281 292-327 (336)
24 2z3y_A Lysine-specific histone 81.0 0.9 3.1E-05 45.2 3.4 36 244-279 619-656 (662)
25 2xag_A Lysine-specific histone 80.8 0.81 2.8E-05 47.2 3.0 37 244-280 790-828 (852)
26 3fpz_A Thiazole biosynthetic e 80.3 0.64 2.2E-05 41.6 1.8 38 242-279 278-322 (326)
27 4gut_A Lysine-specific histone 79.7 0.69 2.4E-05 47.2 2.0 89 184-279 681-775 (776)
28 3dje_A Fructosyl amine: oxygen 78.7 4.4 0.00015 37.3 7.1 76 186-281 309-385 (438)
29 2oln_A NIKD protein; flavoprot 77.8 1.7 5.9E-05 39.5 4.0 74 186-281 296-375 (397)
30 2cul_A Glucose-inhibited divis 76.3 1.5 5.3E-05 37.1 3.0 35 244-280 195-230 (232)
31 4gcm_A TRXR, thioredoxin reduc 76.3 2.4 8.1E-05 37.1 4.3 36 243-278 266-302 (312)
32 4a5l_A Thioredoxin reductase; 75.2 2.3 7.9E-05 37.0 3.9 36 243-278 272-308 (314)
33 1ryi_A Glycine oxidase; flavop 74.0 2.7 9.4E-05 37.7 4.2 81 186-286 287-368 (382)
34 4fk1_A Putative thioredoxin re 73.7 1.2 4.3E-05 39.0 1.8 36 243-278 260-296 (304)
35 3fbs_A Oxidoreductase; structu 72.0 2.5 8.5E-05 36.3 3.3 36 243-279 253-289 (297)
36 2b9w_A Putative aminooxidase; 71.4 2.1 7.2E-05 39.3 2.8 32 245-278 391-423 (424)
37 3f8d_A Thioredoxin reductase ( 71.1 3.1 0.00011 36.0 3.8 37 243-279 275-314 (323)
38 1rsg_A FMS1 protein; FAD bindi 70.2 3.2 0.00011 39.5 3.9 36 245-280 469-506 (516)
39 3itj_A Thioredoxin reductase 1 70.0 2.7 9.3E-05 36.8 3.1 36 244-279 296-332 (338)
40 2gf3_A MSOX, monomeric sarcosi 64.1 4.5 0.00015 36.3 3.4 75 187-281 291-365 (389)
41 1fl2_A Alkyl hydroperoxide red 62.4 6.3 0.00022 34.1 4.0 37 243-279 265-302 (310)
42 3oz2_A Digeranylgeranylglycero 61.1 4.6 0.00016 36.0 2.8 34 246-279 275-313 (397)
43 3r9u_A Thioredoxin reductase; 60.5 5.2 0.00018 34.5 3.0 37 243-279 272-309 (315)
44 3cty_A Thioredoxin reductase; 60.4 6.9 0.00024 34.1 3.9 36 244-279 277-313 (319)
45 2q0l_A TRXR, thioredoxin reduc 60.0 6.9 0.00024 33.9 3.8 37 243-279 269-306 (311)
46 2ywl_A Thioredoxin reductase r 59.4 6.1 0.00021 31.4 3.1 37 243-279 131-168 (180)
47 1vdc_A NTR, NADPH dependent th 57.5 6.4 0.00022 34.5 3.1 36 244-279 284-320 (333)
48 1trb_A Thioredoxin reductase; 56.2 7 0.00024 33.9 3.1 36 244-279 275-311 (320)
49 1d4d_A Flavocytochrome C fumar 55.9 3.3 0.00011 40.3 1.0 35 245-279 525-567 (572)
50 1i8t_A UDP-galactopyranose mut 55.9 9.4 0.00032 34.7 4.0 35 246-280 331-366 (367)
51 2q7v_A Thioredoxin reductase; 55.8 7.3 0.00025 34.1 3.2 37 244-280 273-310 (325)
52 4a9w_A Monooxygenase; baeyer-v 55.3 7.7 0.00026 33.9 3.3 38 243-280 310-350 (357)
53 1y56_B Sarcosine oxidase; dehy 53.1 8.9 0.0003 34.3 3.4 76 186-281 280-356 (382)
54 2gqf_A Hypothetical protein HI 52.6 7.3 0.00025 36.0 2.8 34 245-278 361-399 (401)
55 3lzw_A Ferredoxin--NADP reduct 52.4 8.1 0.00028 33.5 2.9 37 243-279 273-312 (332)
56 1qo8_A Flavocytochrome C3 fuma 52.2 4.8 0.00017 38.9 1.5 36 244-279 518-561 (566)
57 4gde_A UDP-galactopyranose mut 51.2 9.9 0.00034 35.5 3.5 33 248-280 443-478 (513)
58 3dgh_A TRXR-1, thioredoxin red 51.2 12 0.00042 35.1 4.1 39 243-281 314-353 (483)
59 1y0p_A Fumarate reductase flav 51.1 4.4 0.00015 39.2 1.0 36 244-279 523-566 (571)
60 4dna_A Probable glutathione re 51.0 10 0.00035 35.4 3.5 38 243-280 294-331 (463)
61 2i0z_A NAD(FAD)-utilizing dehy 50.3 8.4 0.00029 35.9 2.8 34 245-279 402-441 (447)
62 1chu_A Protein (L-aspartate ox 50.2 5.5 0.00019 38.5 1.5 37 243-279 363-408 (540)
63 3urh_A Dihydrolipoyl dehydroge 49.9 10 0.00035 35.7 3.4 39 243-281 326-364 (491)
64 4at0_A 3-ketosteroid-delta4-5a 49.8 4.7 0.00016 38.4 1.0 36 244-279 465-508 (510)
65 2a87_A TRXR, TR, thioredoxin r 49.4 11 0.00038 33.1 3.4 36 244-279 277-313 (335)
66 1dxl_A Dihydrolipoamide dehydr 49.1 14 0.00048 34.4 4.2 38 243-280 305-342 (470)
67 3l8k_A Dihydrolipoyl dehydroge 48.7 12 0.00039 35.1 3.5 38 243-280 296-333 (466)
68 3dk9_A Grase, GR, glutathione 48.5 11 0.00038 35.3 3.4 38 243-280 319-356 (478)
69 3o0h_A Glutathione reductase; 48.3 11 0.00039 35.4 3.4 38 243-280 314-351 (484)
70 3lad_A Dihydrolipoamide dehydr 46.5 12 0.0004 35.1 3.1 39 243-281 306-344 (476)
71 3qfa_A Thioredoxin reductase 1 46.4 13 0.00043 35.6 3.4 38 243-280 342-380 (519)
72 3ic9_A Dihydrolipoamide dehydr 46.4 12 0.0004 35.5 3.1 36 244-279 302-337 (492)
73 2bs2_A Quinol-fumarate reducta 46.2 8 0.00027 38.5 2.0 36 243-278 381-425 (660)
74 2zbw_A Thioredoxin reductase; 46.2 14 0.0005 32.1 3.6 37 243-279 275-314 (335)
75 1kf6_A Fumarate reductase flav 45.5 6.9 0.00024 38.4 1.4 36 243-278 368-412 (602)
76 2a8x_A Dihydrolipoyl dehydroge 45.4 14 0.00046 34.5 3.4 37 243-279 297-333 (464)
77 2gjc_A Thiazole biosynthetic e 45.2 17 0.00059 32.9 3.9 35 246-280 282-323 (326)
78 3dgz_A Thioredoxin reductase 2 44.4 14 0.00048 34.8 3.3 38 243-280 314-352 (488)
79 3ab1_A Ferredoxin--NADP reduct 44.4 16 0.00054 32.4 3.6 36 244-279 287-325 (360)
80 1zk7_A HGII, reductase, mercur 43.8 19 0.00065 33.5 4.1 38 243-280 297-334 (467)
81 1zmd_A Dihydrolipoyl dehydroge 43.5 15 0.00051 34.3 3.4 38 243-280 308-345 (474)
82 3ces_A MNMG, tRNA uridine 5-ca 43.5 13 0.00046 37.0 3.1 29 245-274 382-410 (651)
83 1hyu_A AHPF, alkyl hydroperoxi 43.3 18 0.00061 34.5 3.9 37 243-279 476-513 (521)
84 3lxd_A FAD-dependent pyridine 43.2 10 0.00035 34.8 2.1 39 243-281 273-322 (415)
85 2h88_A Succinate dehydrogenase 42.9 5.7 0.00019 39.3 0.3 34 245-278 387-429 (621)
86 3klj_A NAD(FAD)-dependent dehy 42.8 13 0.00043 34.1 2.7 38 243-281 253-295 (385)
87 3g3e_A D-amino-acid oxidase; F 42.7 17 0.00057 32.2 3.4 78 186-281 255-334 (351)
88 2v3a_A Rubredoxin reductase; a 42.5 12 0.0004 34.0 2.4 38 243-280 265-306 (384)
89 2hqm_A GR, grase, glutathione 42.0 17 0.00058 34.1 3.5 37 244-280 311-347 (479)
90 1ebd_A E3BD, dihydrolipoamide 42.0 17 0.00057 33.8 3.4 38 243-280 296-333 (455)
91 2vdc_G Glutamate synthase [NAD 41.6 15 0.00053 34.5 3.1 37 243-279 405-441 (456)
92 1ges_A Glutathione reductase; 41.1 18 0.00061 33.6 3.5 37 244-280 292-328 (450)
93 3cp8_A TRNA uridine 5-carboxym 40.7 15 0.00053 36.5 3.1 33 244-277 374-407 (641)
94 3gyx_A Adenylylsulfate reducta 40.6 17 0.00059 36.1 3.4 35 243-277 448-484 (662)
95 1xdi_A RV3303C-LPDA; reductase 40.3 18 0.00062 34.1 3.4 38 243-280 305-342 (499)
96 2qae_A Lipoamide, dihydrolipoy 40.0 18 0.00063 33.6 3.4 38 243-280 302-340 (468)
97 2eq6_A Pyruvate dehydrogenase 39.9 18 0.00063 33.7 3.4 38 243-280 297-334 (464)
98 3axb_A Putative oxidoreductase 39.8 27 0.00093 32.0 4.5 73 187-281 345-419 (448)
99 1jnr_A Adenylylsulfate reducta 39.7 15 0.00052 36.2 2.9 34 244-277 428-463 (643)
100 1v59_A Dihydrolipoamide dehydr 39.6 18 0.0006 33.8 3.2 38 243-280 313-350 (478)
101 1mo9_A ORF3; nucleotide bindin 38.8 19 0.00064 34.3 3.3 38 243-280 341-378 (523)
102 1ojt_A Surface protein; redox- 38.8 20 0.00067 33.7 3.4 38 243-280 312-349 (482)
103 3fg2_P Putative rubredoxin red 38.3 11 0.00037 34.5 1.5 39 243-281 263-311 (404)
104 3v76_A Flavoprotein; structura 38.1 15 0.00053 34.1 2.5 32 245-276 380-416 (417)
105 2e5v_A L-aspartate oxidase; ar 37.3 6.1 0.00021 37.4 -0.5 17 242-258 324-340 (472)
106 2wpf_A Trypanothione reductase 37.3 21 0.00073 33.7 3.4 38 243-280 318-355 (495)
107 1fec_A Trypanothione reductase 37.1 21 0.00073 33.6 3.4 38 243-280 314-351 (490)
108 2r9z_A Glutathione amide reduc 36.6 22 0.00076 33.2 3.4 37 244-280 291-327 (463)
109 2bi7_A UDP-galactopyranose mut 36.5 14 0.00048 33.8 1.9 34 246-279 334-368 (384)
110 3ef6_A Toluene 1,2-dioxygenase 36.2 15 0.0005 33.7 2.0 38 244-281 264-310 (410)
111 1vg0_A RAB proteins geranylger 36.0 17 0.0006 36.1 2.6 29 132-161 480-508 (650)
112 1gpe_A Protein (glucose oxidas 35.7 85 0.0029 30.4 7.5 36 245-280 543-582 (587)
113 3g5s_A Methylenetetrahydrofola 33.6 18 0.00062 34.2 2.2 35 245-280 326-364 (443)
114 2zxi_A TRNA uridine 5-carboxym 33.3 23 0.00078 35.2 2.9 36 244-280 385-425 (637)
115 1xhc_A NADH oxidase /nitrite r 32.9 23 0.00079 32.0 2.7 38 243-280 256-297 (367)
116 1lvl_A Dihydrolipoamide dehydr 32.6 28 0.00095 32.4 3.3 38 243-280 293-330 (458)
117 2wdq_A Succinate dehydrogenase 32.4 7.3 0.00025 38.1 -0.8 33 246-278 379-420 (588)
118 3kd9_A Coenzyme A disulfide re 32.3 35 0.0012 31.5 3.9 39 243-281 268-316 (449)
119 2x8g_A Thioredoxin glutathione 32.0 26 0.0009 33.8 3.1 37 244-280 422-459 (598)
120 3k30_A Histamine dehydrogenase 32.0 24 0.00081 35.0 2.8 36 244-280 638-673 (690)
121 1v0j_A UDP-galactopyranose mut 31.7 11 0.00038 34.5 0.4 32 248-279 353-385 (399)
122 2knj_A Microplusin preprotein; 31.6 24 0.00084 25.9 2.1 29 15-43 54-82 (90)
123 1lqt_A FPRA; NADP+ derivative, 31.6 22 0.00074 33.4 2.4 35 245-280 349-385 (456)
124 2gmh_A Electron transfer flavo 29.5 35 0.0012 33.1 3.6 33 247-279 346-383 (584)
125 3nyc_A D-arginine dehydrogenas 29.3 45 0.0015 29.3 4.0 38 244-283 324-361 (381)
126 2gqw_A Ferredoxin reductase; f 29.0 23 0.00078 32.4 2.0 39 243-281 261-309 (408)
127 3jsk_A Cypbp37 protein; octame 28.8 42 0.0015 30.5 3.8 40 247-286 293-339 (344)
128 3cgb_A Pyridine nucleotide-dis 28.5 28 0.00095 32.6 2.5 38 243-280 306-353 (480)
129 3iwa_A FAD-dependent pyridine 28.5 22 0.00077 33.1 1.9 39 243-281 282-330 (472)
130 3oc4_A Oxidoreductase, pyridin 28.4 13 0.00046 34.5 0.3 38 243-280 267-314 (452)
131 2xve_A Flavin-containing monoo 28.2 47 0.0016 31.0 4.1 36 245-281 305-340 (464)
132 1cjc_A Protein (adrenodoxin re 28.1 17 0.00058 34.2 1.0 35 244-279 355-392 (460)
133 2yqu_A 2-oxoglutarate dehydrog 27.8 36 0.0012 31.4 3.2 37 244-280 291-327 (455)
134 3ayj_A Pro-enzyme of L-phenyla 27.8 38 0.0013 34.1 3.5 36 245-280 642-678 (721)
135 3pvc_A TRNA 5-methylaminomethy 26.8 56 0.0019 32.2 4.6 33 247-281 618-650 (689)
136 1q1r_A Putidaredoxin reductase 25.5 26 0.0009 32.3 1.8 39 243-281 272-320 (431)
137 3ntd_A FAD-dependent pyridine 25.3 41 0.0014 31.9 3.2 39 243-281 291-339 (565)
138 3d1c_A Flavin-containing putat 25.3 59 0.002 28.5 4.0 38 244-281 297-338 (369)
139 1o94_A Tmadh, trimethylamine d 24.7 29 0.00099 34.7 2.0 36 244-280 663-698 (729)
140 1onf_A GR, grase, glutathione 24.6 56 0.0019 30.7 3.9 15 243-257 300-314 (500)
141 2cdu_A NADPH oxidase; flavoenz 24.3 41 0.0014 31.1 2.8 38 243-280 270-317 (452)
142 2gag_A Heterotetrameric sarcos 24.3 41 0.0014 34.8 3.1 34 245-279 408-441 (965)
143 4eqs_A Coenzyme A disulfide re 23.8 46 0.0016 30.7 3.1 39 243-281 264-312 (437)
144 3ics_A Coenzyme A-disulfide re 23.2 48 0.0017 31.8 3.2 37 243-279 306-352 (588)
145 3atr_A Conserved archaeal prot 23.0 46 0.0016 30.7 2.9 33 247-279 281-318 (453)
146 1coy_A Cholesterol oxidase; ox 22.7 53 0.0018 31.0 3.4 35 245-279 465-503 (507)
147 3c4a_A Probable tryptophan hyd 22.2 63 0.0022 28.8 3.6 33 248-280 262-299 (381)
148 3rp8_A Flavoprotein monooxygen 22.0 70 0.0024 28.7 3.9 33 248-280 301-338 (407)
149 3h8l_A NADH oxidase; membrane 21.9 55 0.0019 29.5 3.2 37 243-279 294-333 (409)
150 2uzz_A N-methyl-L-tryptophan o 21.6 64 0.0022 28.3 3.5 74 187-281 285-358 (372)
151 3h28_A Sulfide-quinone reducta 21.2 75 0.0026 29.0 4.0 36 244-279 282-330 (430)
152 3t37_A Probable dehydrogenase; 20.4 52 0.0018 30.8 2.7 35 245-281 484-520 (526)
No 1
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=100.00 E-value=4.4e-33 Score=270.30 Aligned_cols=177 Identities=20% Similarity=0.294 Sum_probs=120.1
Q ss_pred CCCceeEEEeecccCCCCCCCCCccceEEE-cccCC--------CCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCC
Q 022805 93 LRPFSEIVDSLELEDPFGLREDLGIHHIVV-NDWDR--------GVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGT 163 (292)
Q Consensus 93 ~~~~s~~~~~~~l~~~~~l~~~l~~h~~~~-~d~~~--------~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~ 163 (292)
..+.|.++++++++.+. +.+.+|++++ .+|.. +..++++++++++||..||++||+|++++++++++
T Consensus 301 ~~~~s~~~~~~~l~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~- 376 (501)
T 4dgk_A 301 RMSNSLFVLYFGLNHHH---DQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPV- 376 (501)
T ss_dssp --CCEEEEEEEEESSCC---TTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEE-
T ss_pred ccCCceeEEEecccCCc---cccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEec-
Confidence 34567777777777775 6788899888 45543 23467889999999999999999999999999874
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCC-CCCccCCCCcCC--
Q 022805 164 EPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT-YGPAIQAGKETF-- 240 (292)
Q Consensus 164 ~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~Gs-yG~a~~~~~~~~-- 240 (292)
++..|.+ .+|++.|+++++++++.+|+.+.|+| +++|+.+++.||+||++|+++++|+ ||.++...|..+
T Consensus 377 -p~~~~~~-----~~~~~~~~~~~~~vl~~l~~~~~P~~-~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~R 449 (501)
T 4dgk_A 377 -PHLGTAN-----LDWTVEGPKLRDRIFAYLEQHYMPGL-RSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFR 449 (501)
T ss_dssp -CCTTTSC-----CCHHHHHHHHHHHHHHHHHHHTCTTH-HHHEEEEEEECTTTTC------------------------
T ss_pred -Ccccccc-----ccHHHHHHHHHHHHHHHHHHhhCCCh-HHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccC
Confidence 4444443 46899999999999999998655999 9999999999999999999999999 999988777533
Q ss_pred CCC-CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 241 PGH-STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 241 ~~~-~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
|.+ .|||+|||+|||+|+||+||+||++||++||++|++.
T Consensus 450 P~~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~d 490 (501)
T 4dgk_A 450 PHNRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLED 490 (501)
T ss_dssp ------CCTTEEECCCH------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 544 4899999999999999999999999999999999864
No 2
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.42 E-value=8.3e-13 Score=124.68 Aligned_cols=143 Identities=23% Similarity=0.330 Sum_probs=97.4
Q ss_pred eeEEEeecccCCCCCCCCCccceEEEc-ccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCC
Q 022805 97 SEIVDSLELEDPFGLREDLGIHHIVVN-DWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPR 175 (292)
Q Consensus 97 s~~~~~~~l~~~~~l~~~l~~h~~~~~-d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r 175 (292)
+.+.++++++.+. ..+|++++. ++. ....++.+|..||++||+|++.++++.+. .|++.
T Consensus 280 ~~~~v~l~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~s~~~p~~ap~G~~~l~~~~~~-----~~~~~--- 339 (425)
T 3ka7_A 280 AGIKICLAADEPL-----VGHTGVLLTPYTR-------RINGVNEVTQADPELAPPGKHLTMCHQYV-----APENV--- 339 (425)
T ss_dssp EEEEEEEEESSCS-----SCSSSEEECCSSS-------SEEEEECGGGTCGGGSCTTCEEEEEEEEE-----CGGGG---
T ss_pred ceEEEEeecCCCc-----cCcCEEEECCChh-------hcceEEeccCCCCCcCCCCCeEEEEEecc-----ccccc---
Confidence 5567778887764 246677663 332 35678999999999999999999886542 34332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCC
Q 022805 176 SAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGD 255 (292)
Q Consensus 176 ~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~ 255 (292)
+ ..++..+.+++.|++++ |++ +..+..+.. | .++. +....+...++..+||++|||+|||
T Consensus 340 -~----~~~~~~~~~~~~l~~~~-p~~-~~~~~~v~~--------~----~~~~-P~~~~~~~~~~~~~~p~~gL~laG~ 399 (425)
T 3ka7_A 340 -K----NLESEIEMGLEDLKEIF-PGK-RYEVLLIQS--------Y----HDEW-PVNRAASGTDPGNETPFSGLYVVGD 399 (425)
T ss_dssp -G----GHHHHHHHHHHHHHHHS-TTC-CEEEEEEEE--------E----BTTB-CSBSSCTTCCCCSBCSSBTEEECST
T ss_pred -c----chHHHHHHHHHHHHHhC-CCC-ceEEEEEEE--------E----CCCc-cccccccCCCCCCCCCcCCeEEeCC
Confidence 1 11334588999999999 987 544433221 1 1111 1111122345778899999999999
Q ss_pred CcCC--CCcchhhhhhHHHHHHHHhc
Q 022805 256 STFP--GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 256 ~~~p--G~Gv~gv~~SG~~~A~~il~ 279 (292)
++.+ |.||++|++||+.+|++|++
T Consensus 400 ~~~~~gg~gv~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 400 GAKGKGGIEVEGVALGVMSVMEKVLG 425 (425)
T ss_dssp TSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred ccCCCCCCccHHHHHHHHHHHHHhhC
Confidence 9999 88999999999999999874
No 3
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.89 E-value=1.6e-08 Score=95.56 Aligned_cols=138 Identities=16% Similarity=0.065 Sum_probs=91.4
Q ss_pred ccCCCceeEEEeecccCCCCCCCCCccceEEE-cccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCcccc
Q 022805 91 KLLRPFSEIVDSLELEDPFGLREDLGIHHIVV-NDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELW 169 (292)
Q Consensus 91 ~~~~~~s~~~~~~~l~~~~~l~~~l~~h~~~~-~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W 169 (292)
++..+ +.+.++++++.+. +.+|++++ .|++ .-.++++|..||+++|+|++.+++.+.+.. .
T Consensus 263 ~~~~~-~~~~v~l~~~~~~-----~~~~~~~~~~~~~--------~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~--~-- 324 (421)
T 3nrn_A 263 SIEPS-EGIKFNLAVPGEP-----RIGNTIVFTPGLM--------INGFNEPSALDKSLAREGYTLIMAHMALKN--G-- 324 (421)
T ss_dssp TCCCC-CEEEEEEEEESSC-----SSCSSEEECTTSS--------SCEEECGGGTCGGGSCTTEEEEEEEEECTT--C--
T ss_pred CCCCC-ceEEEEEEEcCCc-----ccCCeEEEcCCcc--------eeeEeccCCCCCCcCCCCceEEEEEEeecc--c--
Confidence 34544 7788889888773 35678877 3543 225788999999999999999998875421 1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCc
Q 022805 170 KGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQ 249 (292)
Q Consensus 170 ~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~n 249 (292)
+. + +..+.+++.|++.+ |.. .+..+....+ .+-. |-. ....-+. .++ +|
T Consensus 325 ------~~-----~-~~~~~~~~~L~~~~-p~~---~~~~~~~~~~-~~p~--------~~~----~~~~~~~-~~~-~g 373 (421)
T 3nrn_A 325 ------NV-----K-KAIEKGWEELLEIF-PEG---EPLLAQVYRD-GNPV--------NRT----RAGLHIE-WPL-NE 373 (421)
T ss_dssp ------CH-----H-HHHHHHHHHHHHHC-TTC---EEEEEEEC--------------------------CCC-CCC-SS
T ss_pred ------cH-----H-HHHHHHHHHHHHHc-CCC---eEEEeeeccC-CCCc--------ccc----cCCCCCC-CCC-Cc
Confidence 11 1 23678999999999 833 2223222211 1111 100 0000123 788 99
Q ss_pred EEEeCCCcCCCCcc--hhhhhhHHHHHHHH
Q 022805 250 LYCCGDSTFPGIGV--PAVAASGAIVANSL 277 (292)
Q Consensus 250 Lyl~G~~~~pG~Gv--~gv~~SG~~~A~~i 277 (292)
||+|||++.+++|+ +||+.||+.||+.|
T Consensus 374 l~laGd~~~~~~g~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 374 VLVVGDGYRPPGGIEVDGIALGVMKALEKL 403 (421)
T ss_dssp EEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence 99999999987678 99999999999998
No 4
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.94 E-value=1.5e-06 Score=83.30 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCC-CCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCc--CCCCCCCCCCcEEEeCCCcCC
Q 022805 183 KAERSEVIWRAVERALGPGFS-RDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKE--TFPGHSTPIPQLYCCGDSTFP 259 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~-r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G~~~~p 259 (292)
++++.+.+++.|++++ |+.. ++.+ ...+.++.+.+ | ..|+|.... .+.. .++..++|++||||||+++++
T Consensus 362 ~~e~~~~~l~~L~~~~-Pg~~~~~~~-~~~~~~W~~~~-~---~~G~~~~~~-~g~~~~~~~~l~~p~~~l~fAG~~t~~ 434 (472)
T 1b37_A 362 DEQTKAEIMQVLRKMF-PGKDVPDAT-DILVPRWWSDR-F---YKGTFSNWP-VGVNRYEYDQLRAPVGRVYFTGEHTSE 434 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCCCCCS-EEECCCTTTCT-T---TSSSEEECB-TTCCHHHHHHHHCCBTTEEECSGGGCT
T ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCc-eEEecccCCCC-C---CCcccCCCC-CCCChhHHHHHhccCCcEEEeecccCC
Confidence 6788899999999999 8851 4444 33466665422 2 256654211 1111 123447899999999999987
Q ss_pred --CCcchhhhhhHHHHHHHHhch
Q 022805 260 --GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 260 --G~Gv~gv~~SG~~~A~~il~~ 280 (292)
+++|.||+.||..||++|++.
T Consensus 435 ~~~g~v~GA~~SG~~aA~~i~~~ 457 (472)
T 1b37_A 435 HYNGYVHGAYLSGIDSAEILINC 457 (472)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHH
Confidence 458999999999999999864
No 5
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.90 E-value=6.9e-07 Score=86.09 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHH
Q 022805 141 PSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQR 220 (292)
Q Consensus 141 ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~ 220 (292)
+|..+|..+|+|+..+++++.. .....|..++ ++++.+.+++.|++++ |.- .+-+......-+.
T Consensus 374 ~s~~~~~~~p~g~~~l~~~~~g-~~~~~~~~~~---------~ee~~~~v~~~L~~~~-g~~-~~p~~~~~~~w~~---- 437 (504)
T 1sez_A 374 SSMMFPDRAPNNVYLYTTFVGG-SRNRELAKAS---------RTELKEIVTSDLKQLL-GAE-GEPTYVNHLYWSK---- 437 (504)
T ss_dssp HHHHCGGGSCTTEEEEEEEEES-TTCGGGTTCC---------HHHHHHHHHHHHHHHH-CBC-SCCSSEEEEEEEE----
T ss_pred eccccCCcCCCCCEEEEEEeCC-CCcccccCCC---------HHHHHHHHHHHHHHHh-CCC-CCCeEEEEeECCC----
Confidence 3456777889998887777653 2223454331 3467788999999998 642 2211111110000
Q ss_pred HhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 221 FLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 221 y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
-+..+.+.|+.. ...+....++++|||+||+++. |.|+.+|+.||+.+|++|+..
T Consensus 438 ~~p~~~~g~~~~----~~~~~~~~~~~~~l~~aG~~~~-g~~v~gai~sG~~aA~~il~~ 492 (504)
T 1sez_A 438 AFPLYGHNYDSV----LDAIDKMEKNLPGLFYAGNHRG-GLSVGKALSSGCNAADLVISY 492 (504)
T ss_dssp EEECCCTTHHHH----HHHHHHHHHHSTTEEECCSSSS-CSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCcCHHHH----HHHHHHHHHhCCCEEEEeecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 000111111100 0001123467899999999996 789999999999999999753
No 6
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.87 E-value=8.3e-07 Score=84.82 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=71.9
Q ss_pred EEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHH
Q 022805 137 LISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPL 216 (292)
Q Consensus 137 ~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPl 216 (292)
.+..+|..+|..+|+|+..+++++.. .....|... -++++.+.+++.|++.+ |.. .+ +....+
T Consensus 350 ~~~~~s~~~~~~~p~g~~~l~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~l~~~~-~~~-~~-p~~~~~---- 412 (478)
T 2ivd_A 350 GAIHASTTFPFRAEGGRVLYSCMVGG-ARQPGLVEQ---------DEDALAALAREELKALA-GVT-AR-PSFTRV---- 412 (478)
T ss_dssp EEEEHHHHCGGGBSTTCEEEEEEEEC-TTCGGGGGS---------CHHHHHHHHHHHHHHHH-CCC-SC-CSEEEE----
T ss_pred EEEEEcccCCCcCCCCCEEEEEEeCC-cCCccccCC---------CHHHHHHHHHHHHHHHh-CCC-CC-CcEEEE----
Confidence 34444555677788998888877642 222233322 24677889999999999 866 43 222111
Q ss_pred HHHHHhcCCCC--CCCCccCCCCcCC-CCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 217 THQRFLRRNRG--TYGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 217 T~~~y~~~~~G--syG~a~~~~~~~~-~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.++ ..+ .|+.........+ ...++ ++|||+||+++ +|.||.|++.||+.+|++|++.
T Consensus 413 --~~w---~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~-~g~gv~gA~~SG~~aA~~i~~~ 472 (478)
T 2ivd_A 413 --FRW---PLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAY-KGVGLNDCIRNAAQLADALVAG 472 (478)
T ss_dssp --EEE---SSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTT-SCCSHHHHHHHHHHHHHHHCC-
T ss_pred --EEC---CCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 011 111 1222111000001 01123 79999999998 6889999999999999999864
No 7
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=97.86 E-value=2.2e-06 Score=83.17 Aligned_cols=88 Identities=17% Similarity=0.303 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHH--hc--CCCCCCCCccCCCCc-CC-CCCCCCCCcEEEeCCC
Q 022805 183 KAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRF--LR--RNRGTYGPAIQAGKE-TF-PGHSTPIPQLYCCGDS 256 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y--~~--~~~GsyG~a~~~~~~-~~-~~~~T~i~nLyl~G~~ 256 (292)
++++.+.+++.|++++ |.- . +.+|.+++.. .. -..|+|.....+++. .+ +..++|++||||||++
T Consensus 357 ~~e~~~~vl~~L~~~~-~~~-~-------~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~ 427 (520)
T 1s3e_A 357 KEERLKKLCELYAKVL-GSL-E-------ALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427 (520)
T ss_dssp HHHHHHHHHHHHHHHH-TCG-G-------GGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGG
T ss_pred HHHHHHHHHHHHHHHh-Ccc-c-------cCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehh
Confidence 4567788999999998 642 1 2233332221 11 124665422222221 11 3457899999999998
Q ss_pred c---CCCCcchhhhhhHHHHHHHHhch
Q 022805 257 T---FPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 257 ~---~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+ ++| ++.||+.||..+|++|+..
T Consensus 428 t~~~~~g-~v~GAi~SG~~aA~~i~~~ 453 (520)
T 1s3e_A 428 TATHWSG-YMEGAVEAGERAAREILHA 453 (520)
T ss_dssp GCSSSTT-SHHHHHHHHHHHHHHHHHH
T ss_pred hcCcCcE-EhHHHHHHHHHHHHHHHHH
Confidence 7 664 8999999999999999753
No 8
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.78 E-value=5.9e-06 Score=78.30 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCceeEEEeCCHHHHHHHhc--CCCCCCCCccCCCCc--CCCCCCCCCCcEEEeCCCc
Q 022805 183 KAERSEVIWRAVERALGPG-FSRDKCDVKLVGTPLTHQRFLR--RNRGTYGPAIQAGKE--TFPGHSTPIPQLYCCGDST 257 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~-l~r~~I~~~~~~TPlT~~~y~~--~~~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G~~~ 257 (292)
++++.+.+++.|++.+ |. + .+-+.+.. .++.. ..+|+|......+.. ..+..++|++||||||+++
T Consensus 355 ~~~~~~~~l~~L~~~~-~~~~-~~p~~~~~-------~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~ 425 (453)
T 2yg5_A 355 AEERKATILASLARYL-GPKA-EEPVVYYE-------SDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDI 425 (453)
T ss_dssp HHHHHHHHHHHHHHHH-CGGG-GCCSEEEE-------CCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGG
T ss_pred HHHHHHHHHHHHHHHh-CccC-CCccEEEE-------eecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeeccc
Confidence 4567789999999999 53 3 22222211 11211 124665432222211 1134678999999999987
Q ss_pred ---CCCCcchhhhhhHHHHHHHHhc
Q 022805 258 ---FPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 258 ---~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+|| +|.||+.||..+|++|+.
T Consensus 426 ~~~~~g-~v~gA~~SG~~aA~~i~~ 449 (453)
T 2yg5_A 426 AAEGYQ-HVDGAVRMGQRTAADIIA 449 (453)
T ss_dssp CSTTTT-SHHHHHHHHHHHHHHHHH
T ss_pred cccccc-chHHHHHHHHHHHHHHHH
Confidence 564 799999999999999975
No 9
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.73 E-value=1.2e-05 Score=77.22 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCceeEEEeCCHHHHHHHhcCCCCCCCCcc-----CCCC--cCCCCCCCCCCcEEEeC
Q 022805 183 KAERSEVIWRAVERALGPG-FSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAI-----QAGK--ETFPGHSTPIPQLYCCG 254 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~-l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~-----~~~~--~~~~~~~T~i~nLyl~G 254 (292)
++++.+.+++.|++.+ |+ + ++.++... +.+|.+.. ...|+|.... .+.+ ...+..+++++||||||
T Consensus 384 ~~~~~~~~l~~L~~~~-~~~~-~~~~~~~~---~~~W~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG 457 (489)
T 2jae_A 384 HRQRLAKAIAEGSEIH-GEKY-TRDISSSF---SGSWRRTK-YSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAG 457 (489)
T ss_dssp HHHHHHHHHHHHHHHH-CGGG-GSSEEEEE---EEEGGGST-TTSCSSCEETTC-------CCHHHHHHTSCBTTEEECS
T ss_pred HHHHHHHHHHHHHHHc-Ccch-hhhccccE---EEEcCCCC-CCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeE
Confidence 4577889999999999 88 8 77766543 23344332 2346543211 0111 11123357899999999
Q ss_pred CCc-CCCCcchhhhhhHHHHHHHHhc
Q 022805 255 DST-FPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 255 ~~~-~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+++ ++|+|+.||+.||..+|++|+.
T Consensus 458 ~~~~~~~~~v~gAi~sg~~aA~~i~~ 483 (489)
T 2jae_A 458 DHLSNAIAWQHGALTSARDVVTHIHE 483 (489)
T ss_dssp GGGBSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHhccCccHHHHHHHHHHHHHHHHHH
Confidence 988 5778999999999999999974
No 10
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=97.44 E-value=0.00029 Score=67.26 Aligned_cols=130 Identities=9% Similarity=0.012 Sum_probs=81.2
Q ss_pred CCceeEEEeecccCCCCCCCC---CccceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccC
Q 022805 94 RPFSEIVDSLELEDPFGLRED---LGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWK 170 (292)
Q Consensus 94 ~~~s~~~~~~~l~~~~~l~~~---l~~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~ 170 (292)
.++++|++ +++++ ++ ..+|++++. +. ..++++++||++||..| ++||+|+++++++++++ ..
T Consensus 309 ~~~~~~~i---~~~~~---~~~~~~~~~~ii~~-~~--~~~~~~~~~v~~~s~~d-~~aP~G~~~~~v~~~~~--~~--- 373 (453)
T 2bcg_G 309 RVIRAICI---LNHPV---PNTSNADSLQIIIP-QS--QLGRKSDIYVAIVSDAH-NVCSKGHYLAIISTIIE--TD--- 373 (453)
T ss_dssp EEEEEEEE---ESSCC---TTSTTCSSEEEEEC-GG--GTTCSSCEEEEEEEGGG-TSSCTTCEEEEEEEECC--SS---
T ss_pred cceeEEEE---Ecccc---CCCCCCccEEEEeC-cc--ccCCCCCEEEEEeCCCC-CCCCCCcEEEEEEEecC--CC---
Confidence 34555554 55554 32 234444443 32 24467899999999999 99999999999999752 11
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcE
Q 022805 171 GLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQL 250 (292)
Q Consensus 171 ~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nL 250 (292)
+ . + +.|-..+|+.. |.. +..+...+...|. ....-+|+
T Consensus 374 ~-----~-----~----~~l~~~~~~l~-~~~-~~~~~~~~~~~~~--------------------------~~~~~~~~ 411 (453)
T 2bcg_G 374 K-----P-----H----IELEPAFKLLG-PIE-EKFMGIAELFEPR--------------------------EDGSKDNI 411 (453)
T ss_dssp C-----H-----H----HHTHHHHGGGC-SCS-EEEEEEEEEEEES--------------------------SCSTTTSE
T ss_pred C-----H-----H----HHHHHHHHHhh-hHH-Hhhccchheeeec--------------------------CCCCCCCE
Confidence 1 1 1 12234444444 655 4433333221111 12344899
Q ss_pred EEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 251 YCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 251 yl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
|+||+.-. ...+-+++.+++.++++|++.+
T Consensus 412 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 441 (453)
T 2bcg_G 412 YLSRSYDA-SSHFESMTDDVKDIYFRVTGHP 441 (453)
T ss_dssp EECCCCCS-CSBSHHHHHHHHHHHHHHHSSC
T ss_pred EECCCCCc-cccHHHHHHHHHHHHHHHHCCc
Confidence 99998664 4678999999999999999754
No 11
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.07 E-value=0.0016 Score=61.89 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=72.9
Q ss_pred ccceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 022805 116 GIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVE 195 (292)
Q Consensus 116 ~~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le 195 (292)
.+|++++.+ +..++++++||++|| .||++||+|+++++++++++ .. + .+ +.+-..+|
T Consensus 317 ~~~~i~~~~---~~~~~~~~~~v~~~s-~d~~~aP~G~~~~~~~~~~p--~~---~-----~~---------~~l~~~~~ 373 (433)
T 1d5t_A 317 NSCQIIIPQ---NQVNRKSDIYVCMIS-YAHNVAAQGKYIAIASTTVE--TT---D-----PE---------KEVEPALG 373 (433)
T ss_dssp SSEEEEECG---GGTTCSSCEEEEEEE-GGGTSSCTTCEEEEEEEECC--SS---C-----HH---------HHTHHHHT
T ss_pred ceEEEEeCc---cccCCCCCEEEEEEC-CCCcccCCCCEEEEEEEecC--CC---C-----HH---------HHHHHHHH
Confidence 456666642 134567999999999 99999999999999999752 11 1 11 12334444
Q ss_pred HHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHH
Q 022805 196 RALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVAN 275 (292)
Q Consensus 196 ~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~ 275 (292)
+.. |.. +.-+.......|. ....-+|+|+|+..- .+..+-+++..++...+
T Consensus 374 ~l~-~~~-~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~d-~~~~~e~~~~~~~~~~~ 424 (433)
T 1d5t_A 374 LLE-PID-QKFVAISDLYEPI--------------------------DDGSESQVFCSCSYD-ATTHFETTCNDIKDIYK 424 (433)
T ss_dssp TTC-SCS-EEEEEEEEEEEES--------------------------CCSTTTCEEECCCCC-SCSBSHHHHHHHHHHHH
T ss_pred Hhh-hHH-hheeccceeeeec--------------------------CCCCCCCEEECCCCC-ccccHHHHHHHHHHHHH
Confidence 444 665 4433333222221 123348999998654 44678888888888888
Q ss_pred HHhchh
Q 022805 276 SLVSVS 281 (292)
Q Consensus 276 ~il~~~ 281 (292)
+|.+.+
T Consensus 425 ~~~~~~ 430 (433)
T 1d5t_A 425 RMAGSA 430 (433)
T ss_dssp HHHSSC
T ss_pred HHhCCc
Confidence 887643
No 12
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=96.36 E-value=0.0028 Score=59.61 Aligned_cols=114 Identities=17% Similarity=0.240 Sum_probs=62.7
Q ss_pred CCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcC
Q 022805 145 SPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRR 224 (292)
Q Consensus 145 Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~ 224 (292)
.+..+|+|+..+.++.. ......|..++ .++..+.+++.|++.+ |.. .+-+......=+ +.
T Consensus 352 ~~~~~p~~~~~l~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~l~~~~-g~~-~~p~~~~~~~w~-------~a 412 (470)
T 3i6d_A 352 WPHAAPEGKTLLRAYVG-KAGDESIVDLS---------DNDIINIVLEDLKKVM-NIN-GEPEMTCVTRWH-------ES 412 (470)
T ss_dssp CGGGSCTTCEEEEEEEC-CSSCCGGGTSC---------HHHHHHHHHHHHGGGS-CCC-SCCSEEEEEEEE-------EE
T ss_pred CCCcCCCCCEEEEEEEC-CCCCccccCCC---------HHHHHHHHHHHHHHHh-CCC-CCceEEEEEEcC-------Cc
Confidence 35667888777766652 11222233221 2466778899999998 644 332211111000 00
Q ss_pred CCCCCCCccCCCCcCC-CCCCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 225 NRGTYGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 225 ~~GsyG~a~~~~~~~~-~~~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
...|...+......+ +..+++++|||+||+++. |.|+.+++.||..+|++|+.
T Consensus 413 -~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~-g~gv~~a~~sG~~aA~~i~~ 466 (470)
T 3i6d_A 413 -MPQYHVGHKQRIKELREALASAYPGVYMTGASFE-GVGIPDCIDQGKAAVSDALT 466 (470)
T ss_dssp -EEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS-CCSHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC-CCCHHHHHHHHHHHHHHHHH
Confidence 000100000000000 112356789999999885 78999999999999999975
No 13
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=96.14 E-value=0.00035 Score=67.00 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCH
Q 022805 136 VLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDPRSAEYKKLKAERSEVIWRAVERALGPGFSRDKCDVKLVGTP 215 (292)
Q Consensus 136 ~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TP 215 (292)
.++..+|. ..|.|+.++..++.. .....|+.++ .+++.+.+++.|++.+ + ++.+.+... .++
T Consensus 353 ~~~~~~s~----~~p~g~~~L~~~~~g-~~a~~~~~~~---------~~~~~~~~l~~L~~~~-g-~~~~~~~~~--~~~ 414 (498)
T 2iid_A 353 RFIYYPNH----NFTNGVGVIIAYGIG-DDANFFQALD---------FKDCADIVFNDLSLIH-Q-LPKKDIQSF--CYP 414 (498)
T ss_dssp CEEECCSS----CCTTSCEEEEEEEEH-HHHHTTTTSC---------HHHHHHHHHHHHHHHH-T-CCHHHHHHH--EEE
T ss_pred ceEEECCC----CCCCCCcEEEEEeCC-ccHhhhhcCC---------HHHHHHHHHHHHHHHc-C-CChhhhhhh--cCc
Confidence 45555542 257777777765421 1123344331 2456778899999998 5 302221100 000
Q ss_pred HHHHHHhcC--CCCCCCCccCCCCc--CCCCCCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhch
Q 022805 216 LTHQRFLRR--NRGTYGPAIQAGKE--TFPGHSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 216 lT~~~y~~~--~~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~~ 280 (292)
....+|... ..|+|.... +.+. ..+..+++++||||+|+.+... +++.||+.||+.+|++|++.
T Consensus 415 ~~~~~W~~~p~~~G~~~~~~-~~~~~~~~~~l~~p~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~ 483 (498)
T 2iid_A 415 SVIQKWSLDKYAMGGITTFT-PYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA 483 (498)
T ss_dssp EEEEEGGGCTTTCSSEECCC-TTHHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCceeeecC-CcchHHHHHHHhCCCCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 111223222 245543211 1111 1122356789999999999543 46899999999999999764
No 14
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=95.53 E-value=0.042 Score=51.93 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=32.4
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
+++++|||+||+++. |.|+.++..||..+|++|+...
T Consensus 429 ~~~~~~l~~aG~~~~-g~g~~~a~~sG~~aA~~i~~~l 465 (475)
T 3lov_A 429 LAQYPGIYLAGLAYD-GVGLPDCVASAKTMIESIELEQ 465 (475)
T ss_dssp HHHSTTEEECSTTTS-CSSHHHHHHHHHHHHHHHHHTC
T ss_pred HhhCCCEEEEccCCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 356789999999886 6899999999999999998654
No 15
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=95.38 E-value=0.035 Score=50.14 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCC--CCCccCCCCcCCCCCC--CCCCcEEEeCCCcC
Q 022805 183 KAERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGT--YGPAIQAGKETFPGHS--TPIPQLYCCGDSTF 258 (292)
Q Consensus 183 K~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~Gs--yG~a~~~~~~~~~~~~--T~i~nLyl~G~~~~ 258 (292)
++++.+.+++.+++.+ +.. .+- +...+ .|+. .+. |+.. . .+... ...+||++|||++.
T Consensus 259 ~~~~~~~~~~~l~~~~-g~~-~~p-~~~~v------~rW~---~a~p~~~~~-~-----~~~~~~~~~~~~l~laGd~~~ 320 (342)
T 3qj4_A 259 IEDVQELVFQQLENIL-PGL-PQP-IATKC------QKWR---HSQVTNAAA-N-----CPGQMTLHHKPFLACGGDGFT 320 (342)
T ss_dssp HHHHHHHHHHHHHHHS-CSC-CCC-SEEEE------EEET---TCSBSSCCS-S-----SCSCEEEETTTEEEECSGGGS
T ss_pred HHHHHHHHHHHHHHhc-cCC-CCC-ceeee------cccc---ccccccccC-C-----CcceeEecCCccEEEEccccC
Confidence 4678889999999998 654 332 22222 1111 111 3221 0 12222 46799999999997
Q ss_pred CCCcchhhhhhHHHHHHHHhc
Q 022805 259 PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 259 pG~Gv~gv~~SG~~~A~~il~ 279 (292)
|.||+++..||..+|++|+.
T Consensus 321 -g~~v~~ai~sg~~aa~~i~~ 340 (342)
T 3qj4_A 321 -QSNFDGCITSALCVLEALKN 340 (342)
T ss_dssp -CSSHHHHHHHHHHHHHHHTT
T ss_pred -CCCccHHHHHHHHHHHHHHh
Confidence 57999999999999999975
No 16
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=93.97 E-value=0.027 Score=46.67 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+..+|+|+|||.+. |.||.+++.||+.+|+.|++
T Consensus 291 ~~~~~~v~l~GDa~~-g~gv~~A~~sG~~aA~~I~~ 325 (336)
T 3kkj_A 291 SDADLGIYVCGDWCL-SGRVEGAWLSGQEAARRLLE 325 (336)
T ss_dssp EETTTTEEECCGGGT-TSSHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCEEEEecccC-CcCHHHHHHHHHHHHHHHHH
Confidence 467889999999986 57999999999999999975
No 17
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=92.90 E-value=0.06 Score=50.71 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 247 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 247 i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|||+||++. .|.||++|+.||..+|++|++.+
T Consensus 441 ~~~l~l~G~~~-~G~gv~~a~~sg~~aA~~il~~~ 474 (477)
T 3nks_A 441 RLPLTLAGASY-EGVAVNDCIESGRQAAVSVLGTE 474 (477)
T ss_dssp TCSEEECSTTT-SCCSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEccCC-CCCcHHHHHHHHHHHHHHHHhcc
Confidence 46899999996 68999999999999999998753
No 18
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=92.57 E-value=0.15 Score=48.86 Aligned_cols=151 Identities=10% Similarity=-0.135 Sum_probs=81.7
Q ss_pred ceeEEEeecccCCCCCCCC-CccceEEEcccCCCCCCCCCeEEEEcCCCCCCCCCCCCceEEEEEccCCCCccccCCCCC
Q 022805 96 FSEIVDSLELEDPFGLRED-LGIHHIVVNDWDRGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPFELWKGLDP 174 (292)
Q Consensus 96 ~s~~~~~~~l~~~~~l~~~-l~~h~~~~~d~~~~~~~~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~~~~~~~~W~~~~~ 174 (292)
.+...++++++.+. +++ ...|.+++.+++. +..-++++|..+|.++|+|++++.+.... . +.|.- +
T Consensus 296 ~s~~~v~l~~~~~~--~~~~~~~~~i~vp~~~~------~~~ri~~~s~~~p~~ap~g~~~l~~e~~~-~--~~~~~-~- 362 (484)
T 4dsg_A 296 SSTNVIGIGVKGTP--PPHLKTACWLYFPEDTS------PFYRATVFSNYSKYNVPEGHWSLMLEVSE-S--KYKPV-N- 362 (484)
T ss_dssp EEEEEEEEEEESCC--CGGGTTCCEEECCSTTC------SCSEEECGGGTCGGGSCTTEEEEEEEEEE-B--TTBCC-C-
T ss_pred CceEEEEEEEcCCC--cccCCCCeEEEEEcCCC------eEEEEEeecCCCcccCCCCeEEEEEEEec-C--cCCcC-C-
Confidence 45556667776653 112 2456666665543 45578888899999999999998877642 1 34421 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CceeEEEe-CCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEE
Q 022805 175 RSAEYKKLKAERSEVIWRAVERALGPGFSR-DKCDVKLV-GTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYC 252 (292)
Q Consensus 175 r~~~Y~~~K~~~a~~ll~~le~~~~P~l~r-~~I~~~~~-~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl 252 (292)
.+++.+..++.|++. ..++. +.|....+ --|. ++.. |...+......+...-... |||+
T Consensus 363 --------d~~l~~~a~~~L~~~--~~~~~~~~~~~~~v~r~~~----~yP~----y~~~~~~~~~~~~~~l~~~-~l~~ 423 (484)
T 4dsg_A 363 --------HSTLIEDCIVGCLAS--NLLLPEDLLVSKWHYRIEK----GYPT----PFIGRNNLLEKAQPELMSR-CIYS 423 (484)
T ss_dssp --------TTSHHHHHHHHHHHT--TSCCTTCCEEEEEEEEEEE----EEEC----CBTTHHHHHHHHHHHHHHT-TEEE
T ss_pred --------HHHHHHHHHHHHHHc--CCCCccceEEEEEEEEeCc----cccC----CCccHHHHHHHHHHHHHhC-CcEe
Confidence 134566777777775 34522 23332111 0010 0000 1110000000000000113 9999
Q ss_pred eCCCcC--CC-CcchhhhhhHHHHHHHHh
Q 022805 253 CGDSTF--PG-IGVPAVAASGAIVANSLV 278 (292)
Q Consensus 253 ~G~~~~--pG-~Gv~gv~~SG~~~A~~il 278 (292)
+|.... -| .++..+++||+.||+.|+
T Consensus 424 ~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 424 RGRFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp CSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred ecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence 998432 12 377899999999999998
No 19
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=87.63 E-value=0.18 Score=49.41 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=32.8
Q ss_pred CC-CCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 ST-PIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T-~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.| .|+|||.||+.+---+||..++++|+.||+.|+..
T Consensus 504 ~~~~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~~ 541 (549)
T 3nlc_A 504 QSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVARD 541 (549)
T ss_dssp SCTTCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHHHH
T ss_pred eECCcCCEEEccccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 45 79999999999966689999999999999999754
No 20
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=87.57 E-value=0.55 Score=43.37 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCC--CCCCCCccCCCCc--CCCCCCCCCCcEEEeCCCcCC-CCc-
Q 022805 189 VIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRN--RGTYGPAIQAGKE--TFPGHSTPIPQLYCCGDSTFP-GIG- 262 (292)
Q Consensus 189 ~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~--~GsyG~a~~~~~~--~~~~~~T~i~nLyl~G~~~~p-G~G- 262 (292)
.+.+.+++++ |++ . -+.. +. .+|...+ .|+|... .+++. ..+.-+.|+.+|||+|..+.. -+|
T Consensus 339 ~~~~~l~~~~-~~~-~-~~~~--~~-----~~W~~d~~~~G~~~~~-~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~ 407 (431)
T 3k7m_X 339 AVKDAVLYYL-PEV-E-VLGI--DY-----HDWIADPLFEGPWVAP-RVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGY 407 (431)
T ss_dssp HHHHHHHHHC-TTC-E-EEEE--EC-----CCTTTCTTTSSSSCCC-CTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTS
T ss_pred HHHHHHHHhc-CCC-C-ccEe--Ee-----cccCCCCCCCCCCCCc-CCCCCcccHHHHhCCCCcEEEEehhhhccCCeE
Confidence 3567788888 988 4 2211 11 1222222 4776432 22221 223345789999999955542 234
Q ss_pred chhhhhhHHHHHHHHhchh
Q 022805 263 VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 263 v~gv~~SG~~~A~~il~~~ 281 (292)
+-|+..||.-+|++|+-.-
T Consensus 408 ~~GA~~sg~raa~~i~~~~ 426 (431)
T 3k7m_X 408 IEGALETAECAVNAILHSH 426 (431)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred ehHHHHHHHHHHHHHHhhh
Confidence 8899999999999998643
No 21
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=85.71 E-value=0.54 Score=39.07 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeE-----EEeCCHHHHHHHhcCCCCCCCCccCCCCc-C-CCCCCCCCCcEEEeCCCc
Q 022805 185 ERSEVIWRAVERALGPGFSRDKCDV-----KLVGTPLTHQRFLRRNRGTYGPAIQAGKE-T-FPGHSTPIPQLYCCGDST 257 (292)
Q Consensus 185 ~~a~~ll~~le~~~~P~l~r~~I~~-----~~~~TPlT~~~y~~~~~GsyG~a~~~~~~-~-~~~~~T~i~nLyl~G~~~ 257 (292)
++.+.+++.|+++++|++ ...+.. ....-| | ..|+|... .+++. . .+..+.|+.+|||+|+.+
T Consensus 58 e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~W~~dp-----~---~~Ga~s~~-~pg~~~~~~~~l~~p~grl~FAGe~t 127 (181)
T 2e1m_C 58 ERYGYALENLQSVHGRRI-EVFYTGAGQTQSWLRDP-----Y---ACGEAAVY-TPHQMTAFHLDVVRPEGPVYFAGEHV 127 (181)
T ss_dssp TTHHHHHHHHHHHHCGGG-GGTEEEEEEEEESSSCT-----T---TSSSEECC-CTTHHHHHHHHHHSCBTTEEECSGGG
T ss_pred HHHHHHHHHHHHHhCCCc-HhhccCcceecccCCCC-----C---CCCcccCc-CCCchHHHHHHHhCCCCcEEEEEHHH
Confidence 455678899999986665 322222 112222 1 13554321 11211 1 122245678999999999
Q ss_pred CCCCc-chhhhhhHHHHHHHHhch
Q 022805 258 FPGIG-VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 258 ~pG~G-v~gv~~SG~~~A~~il~~ 280 (292)
...+| |.|++.||..+|++|+..
T Consensus 128 s~~~g~~eGAl~SG~raA~~i~~~ 151 (181)
T 2e1m_C 128 SLKHAWIEGAVETAVRAAIAVNEA 151 (181)
T ss_dssp TTSTTSHHHHHHHHHHHHHHHHTC
T ss_pred cCCccCHHHHHHHHHHHHHHHHHH
Confidence 74334 889999999999999864
No 22
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=84.10 E-value=0.57 Score=44.29 Aligned_cols=37 Identities=5% Similarity=-0.079 Sum_probs=31.0
Q ss_pred CCCCCcEEEeCCCcCC--CCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFP--GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~p--G~Gv~gv~~SG~~~A~~il~~ 280 (292)
++|++||||||+.+.. ++-+.|++.||..+|++|+..
T Consensus 446 ~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~ 484 (495)
T 2vvm_A 446 REKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLEE 484 (495)
T ss_dssp HCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHHH
Confidence 4678999999999863 245889999999999999754
No 23
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=83.51 E-value=0.67 Score=40.98 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+.++|++|||+++ |+|+.+++.||..+|+.|....
T Consensus 292 ~~~~rl~laGDa~~-g~gv~~a~~sg~~lA~~l~~~~ 327 (336)
T 1yvv_A 292 DADLGIYVCGDWCL-SGRVEGAWLSGQEAARRLLEHL 327 (336)
T ss_dssp ETTTTEEECCGGGT-TSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEecCCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 45689999999998 5799999999999999997653
No 24
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=80.99 E-value=0.9 Score=45.22 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=29.5
Q ss_pred CCCCCcEEEeCCCcCCC--CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPG--IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG--~Gv~gv~~SG~~~A~~il~ 279 (292)
++++++|||+|..|... +-+.|+..||.-+|++|+.
T Consensus 619 ~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~ 656 (662)
T 2z3y_A 619 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD 656 (662)
T ss_dssp --CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 56789999999999752 3588999999999999975
No 25
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=80.76 E-value=0.81 Score=47.20 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCCCcEEEeCCCcCCC--CcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPG--IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG--~Gv~gv~~SG~~~A~~il~~ 280 (292)
++++.+|||+|..|... +-+.|+..||.-+|++|+..
T Consensus 790 ~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~ 828 (852)
T 2xag_A 790 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 828 (852)
T ss_dssp CCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 56789999999998642 35889999999999999763
No 26
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=80.29 E-value=0.64 Score=41.57 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEeCCCcC-----CCCc-chh-hhhhHHHHHHHHhc
Q 022805 242 GHSTPIPQLYCCGDSTF-----PGIG-VPA-VAASGAIVANSLVS 279 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~-----pG~G-v~g-v~~SG~~~A~~il~ 279 (292)
+.+|.+||+|.+||.+. ++-| +.| .+.||+.||+.|++
T Consensus 278 ~~~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~ 322 (326)
T 3fpz_A 278 GAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322 (326)
T ss_dssp EECTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHH
T ss_pred CeEECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 34789999999998652 1112 333 45699999999975
No 27
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=79.67 E-value=0.69 Score=47.22 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcC--CCCCCCCccCCCCc-CCCCCCCC-CCcEEEeCCCcCC
Q 022805 184 AERSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRR--NRGTYGPAIQAGKE-TFPGHSTP-IPQLYCCGDSTFP 259 (292)
Q Consensus 184 ~~~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~--~~GsyG~a~~~~~~-~~~~~~T~-i~nLyl~G~~~~p 259 (292)
+++.+.+++.|.+++ ++-.........+. ++... ..|+|......... .+..-..| ..+|||+|+.|.+
T Consensus 681 eel~~~~l~~L~~if-g~~~~~~P~~~~vt------~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~ 753 (776)
T 4gut_A 681 KQVLQQCMATLRELF-KEQEVPDPTKYFVT------RWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNR 753 (776)
T ss_dssp HHHHHHHHHHHHHHT-TTSCCCCCSEEEEC------CGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCS
T ss_pred HHHHHHHHHHHHHHh-CcccccCcceEEEe------cCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcC
Confidence 467788899999998 53201122222221 12221 24665432211110 00111234 3789999999974
Q ss_pred C--CcchhhhhhHHHHHHHHhc
Q 022805 260 G--IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 260 G--~Gv~gv~~SG~~~A~~il~ 279 (292)
. +-|.|+..||..+|++|+.
T Consensus 754 ~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 754 HFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHHHHh
Confidence 3 3589999999999999975
No 28
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=78.73 E-value=4.4 Score=37.35 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
..+.+.+.+.+++ |.+ .+ .+....+. -++...+ ..++.+.....+|||++.... |+|+.
T Consensus 309 ~~~~l~~~~~~~~-P~l-~~~~~~~~~~g--------------~~~~t~D--~~piig~~p~~~~l~~a~G~~--g~G~~ 368 (438)
T 3dje_A 309 AETRVRALLKETM-PQL-ADRPFSFARIC--------------WCADTAN--REFLIDRHPQYHSLVLGCGAS--GRGFK 368 (438)
T ss_dssp HHHHHHHHHHHHC-GGG-TTCCCSEEEEE--------------EEEECTT--SCCEEEECSSCTTEEEEECCT--TCCGG
T ss_pred HHHHHHHHHHHhC-ccc-ccCCcceeeEE--------------EeCcCCC--CCeEEeecCCCCCEEEEECCC--Ccchh
Confidence 4567888899999 999 65 33332221 1111111 111223333478999986654 78999
Q ss_pred hhhhhHHHHHHHHhchh
Q 022805 265 AVAASGAIVANSLVSVS 281 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~ 281 (292)
.+.+.|...|+.|.+..
T Consensus 369 ~ap~~g~~la~~i~g~~ 385 (438)
T 3dje_A 369 YLPSIGNLIVDAMEGKV 385 (438)
T ss_dssp GTTTHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHHhCCC
Confidence 99999999999998764
No 29
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=77.81 E-value=1.7 Score=39.51 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCC--CccCCCCcCCCCC----CCCCCcEEEeCCCcCC
Q 022805 186 RSEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYG--PAIQAGKETFPGH----STPIPQLYCCGDSTFP 259 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG--~a~~~~~~~~~~~----~T~i~nLyl~G~~~~p 259 (292)
..+.+++.+.+.+ |++ .+.+...... .|+ ...+ ..++.+. .+..+|||++..
T Consensus 296 ~~~~l~~~~~~~~-p~l-~~~~~~~~~g--------------~~~~p~t~D--~~p~ig~~~~~~~~~~~l~~a~G---- 353 (397)
T 2oln_A 296 QMDRLSGWLRDHL-PTV-DPDPVRTSTC--------------LAVLPTDPE--RQFFLGTARDLMTHGEKLVVYGA---- 353 (397)
T ss_dssp HHHHHHHHHHHHC-TTB-CSSCSEEEEE--------------EEEEESSTT--CCCEEEESTTTSTTGGGEEEEEE----
T ss_pred HHHHHHHHHHHhC-CCC-CCCceeEEEE--------------EecCCcCCC--CCeEeecCCccccCCCCEEEEeC----
Confidence 4557889999999 999 6654432221 111 1111 1111121 123789998865
Q ss_pred CCcchhhhhhHHHHHHHHhchh
Q 022805 260 GIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 260 G~Gv~gv~~SG~~~A~~il~~~ 281 (292)
|+|+..+.+.|.+.|+.|++..
T Consensus 354 g~G~~~ap~~g~~la~~i~~~~ 375 (397)
T 2oln_A 354 GWAFKFVPLFGRICADLAVEDS 375 (397)
T ss_dssp SSCGGGHHHHHHHHHHHHHHSC
T ss_pred cchhhccHHHHHHHHHHHhCCC
Confidence 7899999999999999998753
No 30
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=76.31 E-value=1.5 Score=37.10 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCCCCcEEEeCCCcCCCCcchhh-hhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAV-AASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv-~~SG~~~A~~il~~ 280 (292)
.|.+||+|.+|+++ +.|+.++ +.+|+.+|..|+..
T Consensus 195 ~t~~p~iya~G~~a--~~g~~~~~~~~g~~~a~~i~~~ 230 (232)
T 2cul_A 195 LKRLEGLYAVGLCV--REGDYARMSEEGKRLAEHLLHE 230 (232)
T ss_dssp ETTSBSEEECGGGT--SCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccceeeeecc--cCccHHHHHHHHHHHHHHHHhh
Confidence 47999999999999 5676665 57999999998753
No 31
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=76.27 E-value=2.4 Score=37.15 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=28.1
Q ss_pred CCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il 278 (292)
.+|.+||+|.+||.+..|. -+.-++..|+.||..|.
T Consensus 266 ~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 266 MTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp SBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence 4699999999999986433 34556678999999885
No 32
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=75.23 E-value=2.3 Score=37.02 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il 278 (292)
.+|.+||+|.+||.+.... =+.-++..|..||..|.
T Consensus 272 ~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 272 PKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHH
Confidence 4799999999999985322 23445557888887763
No 33
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=73.97 E-value=2.7 Score=37.73 Aligned_cols=81 Identities=14% Similarity=0.246 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
..+.+++.+.+.+ |++ .+ .+.....+ .+....+ ..++.+.....+|||+++... |+|+.
T Consensus 287 ~~~~l~~~~~~~~-p~l-~~~~~~~~w~g--------------~~~~t~d--~~p~ig~~~~~~~l~~~~G~~--g~G~~ 346 (382)
T 1ryi_A 287 GLESVMKKAKTML-PAI-QNMKVDRFWAG--------------LRPGTKD--GKPYIGRHPEDSRILFAAGHF--RNGIL 346 (382)
T ss_dssp HHHHHHHHHHHHC-GGG-GGSEEEEEEEE--------------EEEECSS--SCCEEEEETTEEEEEEEECCS--SCTTT
T ss_pred HHHHHHHHHHHhC-CCc-CCCceeeEEEE--------------ecccCCC--CCcEeccCCCcCCEEEEEcCC--cchHH
Confidence 3567889999999 998 54 33332221 1111111 111112222468999987654 78999
Q ss_pred hhhhhHHHHHHHHhchhchHHH
Q 022805 265 AVAASGAIVANSLVSVSQHSEL 286 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~~~~~~ 286 (292)
.+..+|..+|+.|++.....++
T Consensus 347 ~a~~~g~~la~~i~~~~~~~~~ 368 (382)
T 1ryi_A 347 LAPATGALISDLIMNKEVNQDW 368 (382)
T ss_dssp THHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHhCCCCCchh
Confidence 9999999999999987655444
No 34
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=73.72 E-value=1.2 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCCCCCcEEEeCCCcCCCCc-chhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPGIG-VPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~G-v~gv~~SG~~~A~~il 278 (292)
.+|.+||+|-+||.+.++.- +.-++..|..||..|-
T Consensus 260 ~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 260 GRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp CBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence 47999999999999854432 5556667899988874
No 35
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=72.05 E-value=2.5 Score=36.28 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.+||+|.+||.+. | ..+..+...|..+|..|..
T Consensus 253 ~~t~~~~vya~GD~~~~~-~~~~~A~~~g~~aa~~i~~ 289 (297)
T 3fbs_A 253 KQTTARGIFACGDVARPA-GSVALAVGDGAMAGAAAHR 289 (297)
T ss_dssp CBCSSTTEEECSGGGCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEeecCCch-HHHHHHHHhHHHHHHHHHH
Confidence 3689999999999997 5 4566677889999888854
No 36
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=71.37 E-value=2.1 Score=39.31 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=26.1
Q ss_pred CCCCcEEEeCCCcCCCCcch-hhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFPGIGVP-AVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~-gv~~SG~~~A~~il 278 (292)
.+.+|||+||+++.. |+. ++..||..+|++|+
T Consensus 391 ~~~~~l~~aG~~~~~--g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 391 QGRRNTFYAGEIMSF--GNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp TTGGGEEECSGGGSC--SSHHHHHHHHHHHHHHHT
T ss_pred hCCCCceEecccccc--ccHHHHHHHHHHHHHHhc
Confidence 456899999998854 544 77889999999986
No 37
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=71.14 E-value=3.1 Score=36.01 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=28.9
Q ss_pred CCCCCCcEEEeCCCcCC---CCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFP---GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~p---G~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.. ...+..+...|..+|..|..
T Consensus 275 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 275 MRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYR 314 (323)
T ss_dssp CBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHH
Confidence 36899999999999962 24566677889999888864
No 38
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=70.21 E-value=3.2 Score=39.46 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCCcEEEeCCCcCC-CCc-chhhhhhHHHHHHHHhch
Q 022805 245 TPIPQLYCCGDSTFP-GIG-VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~p-G~G-v~gv~~SG~~~A~~il~~ 280 (292)
.+..+|||+|..|.+ ..| |.|+..||..+|++|+..
T Consensus 469 ~~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~ 506 (516)
T 1rsg_A 469 GQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDL 506 (516)
T ss_dssp CSSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHH
Confidence 367899999999965 344 789999999999999753
No 39
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=69.99 E-value=2.7 Score=36.78 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.7
Q ss_pred CCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+.++ ..+..++..|..||..|..
T Consensus 296 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 296 LTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp BCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHH
Confidence 58899999999999632 3566677889999988864
No 40
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=64.05 E-value=4.5 Score=36.29 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcchhh
Q 022805 187 SEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAV 266 (292)
Q Consensus 187 a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~gv 266 (292)
.+.+++.+.+++ |++ .+.+....++ .+....+ ..++.+.....+|||++.... |+|+..+
T Consensus 291 ~~~l~~~~~~~~-P~l-~~~~~~~w~g--------------~r~~t~D--~~p~ig~~~~~~~l~~a~G~~--g~G~~~a 350 (389)
T 2gf3_A 291 ESNLRAFLEEYM-PGA-NGELKRGAVC--------------MYTKTLD--EHFIIDLHPEHSNVVIAAGFS--GHGFKFS 350 (389)
T ss_dssp HHHHHHHHHHHC-GGG-CSCEEEEEEE--------------EEEECTT--SCCEEEEETTEEEEEEEECCT--TCCGGGH
T ss_pred HHHHHHHHHHhC-CCC-CCCceEEEEE--------------EeccCCC--CCeEEccCCCCCCEEEEECCc--ccccccc
Confidence 367889999999 999 6654433322 1111111 111122223478999886654 6899999
Q ss_pred hhhHHHHHHHHhchh
Q 022805 267 AASGAIVANSLVSVS 281 (292)
Q Consensus 267 ~~SG~~~A~~il~~~ 281 (292)
...|...|+.|++..
T Consensus 351 p~~g~~la~~i~~~~ 365 (389)
T 2gf3_A 351 SGVGEVLSQLALTGK 365 (389)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998754
No 41
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=62.35 E-value=6.3 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.+.. -+..++..|..+|..|..
T Consensus 265 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 265 CETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFD 302 (310)
T ss_dssp CBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHH
Confidence 3588999999999997532 345667788999988864
No 42
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=61.08 E-value=4.6 Score=35.98 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCCcEEEeCCCcC-----CCCcchhhhhhHHHHHHHHhc
Q 022805 246 PIPQLYCCGDSTF-----PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 246 ~i~nLyl~G~~~~-----pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.-+|++++||.+| -|.|+..++.+|.++|+.|..
T Consensus 275 ~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~ 313 (397)
T 3oz2_A 275 TMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKE 313 (397)
T ss_dssp EETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred eeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4578999999875 378999999999999988853
No 43
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=60.47 E-value=5.2 Score=34.51 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=28.3
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+..+ .-+..+...|..+|..|..
T Consensus 272 ~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 272 MQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMA 309 (315)
T ss_dssp CBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHH
Confidence 368899999999998422 3456667789999988864
No 44
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=60.42 E-value=6.9 Score=34.12 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=27.8
Q ss_pred CCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+.+. ..+..+...|..+|..|..
T Consensus 277 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 277 RTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHH
Confidence 58899999999999652 3455567788888888754
No 45
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=60.05 E-value=6.9 Score=33.88 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+... .-+..+...|..+|..|..
T Consensus 269 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 269 MKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVIS 306 (311)
T ss_dssp CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHH
Confidence 358899999999998621 2345566778888888753
No 46
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=59.41 E-value=6.1 Score=31.43 Aligned_cols=37 Identities=32% Similarity=0.292 Sum_probs=28.2
Q ss_pred CCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.+||+|.+||.+.... -+..+...|..+|..|.+
T Consensus 131 ~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 131 GRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVS 168 (180)
T ss_dssp CBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHH
Confidence 4688999999999996533 344566788888888865
No 47
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=57.49 E-value=6.4 Score=34.46 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred CCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+.+. .-+..+...|..+|..|..
T Consensus 284 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 284 QTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEH 320 (333)
T ss_dssp BCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHH
Confidence 58899999999998652 2344566778888888764
No 48
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=56.17 E-value=7 Score=33.93 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=27.8
Q ss_pred CCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+.+. ..+.-++..|..+|..|..
T Consensus 275 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 275 QTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 311 (320)
T ss_dssp BCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHH
Confidence 68899999999999753 2445566788888888853
No 49
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=55.94 E-value=3.3 Score=40.25 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=24.9
Q ss_pred CCCCcEEEeCCCcC-------C-CCcchhhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGDSTF-------P-GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~~~~-------p-G~Gv~gv~~SG~~~A~~il~ 279 (292)
++|||||-+|..+. + |.++..++..|++|++.+.+
T Consensus 525 ~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~ 567 (572)
T 1d4d_A 525 KPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAK 567 (572)
T ss_dssp SEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHH
Confidence 89999999998762 1 11344467788888887754
No 50
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=55.86 E-value=9.4 Score=34.68 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=29.2
Q ss_pred CCCcEEEeCCC-cCCCCcchhhhhhHHHHHHHHhch
Q 022805 246 PIPQLYCCGDS-TFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 246 ~i~nLyl~G~~-~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
..+|+++||.. .+-+.++..++.||..+|+.|++.
T Consensus 331 ~~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~~ 366 (367)
T 1i8t_A 331 REDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMST 366 (367)
T ss_dssp HCTTEEECSTTTTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEcccceeeEecCHHHHHHHHHHHHHHHhcc
Confidence 36899999985 445678999999999999999864
No 51
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=55.83 E-value=7.3 Score=34.05 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.++|+|.+||.+... .-+..+...|..+|..|...
T Consensus 273 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 310 (325)
T 2q7v_A 273 YTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQ 310 (325)
T ss_dssp BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998631 34455667888888888653
No 52
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=55.26 E-value=7.7 Score=33.93 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeC--CCcCCC-CcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCG--DSTFPG-IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G--~~~~pG-~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+| |.+.++ ..+.++...|..+|..|...
T Consensus 310 ~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~ 350 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAY 350 (357)
T ss_dssp BBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 368999999999 556543 35677888999999988653
No 53
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=53.10 E-value=8.9 Score=34.32 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
..+.+++.+.+.+ |++ .+ .+....+ |.+....+ ..++.+.....+|||++.... |+|+.
T Consensus 280 ~~~~l~~~~~~~~-p~l-~~~~~~~~~~--------------g~r~~t~d--~~p~ig~~~~~~~~~~~~G~~--g~G~~ 339 (382)
T 1y56_B 280 FLREVSYYFTKII-PAL-KNLLILRTWA--------------GYYAKTPD--SNPAIGRIEELNDYYIAAGFS--GHGFM 339 (382)
T ss_dssp HHHHHHHHHHHHC-GGG-GGSEEEEEEE--------------EEEEECTT--SCCEEEEESSSBTEEEEECCT--TCHHH
T ss_pred HHHHHHHHHHHhC-CCc-CCCCceEEEE--------------eccccCCC--CCcEeccCCCCCCEEEEEecC--cchHh
Confidence 4567888899999 998 53 3433222 11111111 111222223478999876543 78999
Q ss_pred hhhhhHHHHHHHHhchh
Q 022805 265 AVAASGAIVANSLVSVS 281 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~ 281 (292)
.+...|...|+.|.+..
T Consensus 340 ~a~~~g~~la~~i~~~~ 356 (382)
T 1y56_B 340 MAPAVGEMVAELITKGK 356 (382)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHhCCC
Confidence 99999999999998754
No 54
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=52.64 E-value=7.3 Score=36.02 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=25.1
Q ss_pred CCCCcEEEeCCCcCC---CCc--chhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTFP---GIG--VPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~p---G~G--v~gv~~SG~~~A~~il 278 (292)
+.+||||+||.-..- -+| +..+..||+.|++.+.
T Consensus 361 ~~~~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~ 399 (401)
T 2gqf_A 361 NQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS 399 (401)
T ss_dssp SSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHh
Confidence 579999999976643 123 2358889999998774
No 55
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=52.40 E-value=8.1 Score=33.50 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCCCCCcEEEeCCCcCC-C--CcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFP-G--IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~p-G--~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.. | .-+..+...|..+|..|..
T Consensus 273 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 273 METNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp SBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 35889999999999842 1 1234455678888888764
No 56
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=52.20 E-value=4.8 Score=38.93 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCCCCcEEEeCCCcC-------C-CCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTF-------P-GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~-------p-G~Gv~gv~~SG~~~A~~il~ 279 (292)
.++|||||-+|..+. + |.++..++..|++|++.+.+
T Consensus 518 g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~ 561 (566)
T 1qo8_A 518 SKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAK 561 (566)
T ss_dssp SCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 389999999998762 1 11233466778888877653
No 57
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=51.24 E-value=9.9 Score=35.47 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=25.7
Q ss_pred CcEEEeCC---CcCCCCcchhhhhhHHHHHHHHhch
Q 022805 248 PQLYCCGD---STFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 248 ~nLyl~G~---~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|||++|- +-.....+-.++++|+.||+.|+.-
T Consensus 443 ~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~g 478 (513)
T 4gde_A 443 KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVNG 478 (513)
T ss_dssp TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHHC
T ss_pred cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHcC
Confidence 59999994 4333235778999999999999864
No 58
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=51.16 E-value=12 Score=35.08 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.++|+|.+||.+..+ .-.+.+...|+.+|+.|++..
T Consensus 314 ~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 353 (483)
T 3dgh_A 314 EATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGS 353 (483)
T ss_dssp CBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred CccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 368999999999998411 345566788999999998753
No 59
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=51.15 E-value=4.4 Score=39.25 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCCCcEEEeCCCcC--------CCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTF--------PGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~--------pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.++|||||-+|..+. .|.++..++..|++|++.+..
T Consensus 523 g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~ 566 (571)
T 1y0p_A 523 KQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAK 566 (571)
T ss_dssp SCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHH
Confidence 389999999998752 111233456778888877753
No 60
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=51.03 E-value=10 Score=35.44 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....=.+-+...|+.+|+.|++.
T Consensus 294 ~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 294 SRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp CBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 46899999999999863222345677899999999875
No 61
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=50.31 E-value=8.4 Score=35.91 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCCCcEEEeCCCcCCCCc------chhhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGDSTFPGIG------VPAVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~G------v~gv~~SG~~~A~~il~ 279 (292)
.+|||||+||--+- .+| +.-+..+|++|++.+.+
T Consensus 402 ~~i~GLy~aGEv~~-v~g~~GG~~l~~a~~~G~~Ag~~aa~ 441 (447)
T 2i0z_A 402 KFTNGLYFCGEVLD-IHGYTGGYNITSALVTGRIAGTTAGE 441 (447)
T ss_dssp SSSBTEEECGGGBS-CBCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEeecc-CccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 48999999996554 234 34478899999888753
No 62
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=50.20 E-value=5.5 Score=38.49 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=25.6
Q ss_pred CCCCCCcEEEeCCCcCCC---------CcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPG---------IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG---------~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|+|||||.||..+.-| ..+.-+++.|++|++.+.+
T Consensus 363 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 408 (540)
T 1chu_A 363 GRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITR 408 (540)
T ss_dssp CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHH
Confidence 468999999999876211 1233466778888877753
No 63
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=49.85 E-value=10 Score=35.69 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+....-.+.+...|+.+|+.|++..
T Consensus 326 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 364 (491)
T 3urh_A 326 FQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364 (491)
T ss_dssp CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 468999999999998322345556778999999998753
No 64
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=49.76 E-value=4.7 Score=38.42 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=24.5
Q ss_pred CCCCCcEEEeCCCcC--CCC------cchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTF--PGI------GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~--pG~------Gv~gv~~SG~~~A~~il~ 279 (292)
.++|||||-||-.+. .|. .+..++..|++|++.+.+
T Consensus 465 g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 465 GEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp SSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 489999999997651 111 233466788888887754
No 65
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=49.44 E-value=11 Score=33.12 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=26.7
Q ss_pred CCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+.+. .-...++..|..+|..|..
T Consensus 277 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~ 313 (335)
T 2a87_A 277 STSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAER 313 (335)
T ss_dssp BCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHH
Confidence 58899999999999653 2344456678888887754
No 66
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=49.07 E-value=14 Score=34.37 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+-+...|+.+|..|++.
T Consensus 305 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 342 (470)
T 1dxl_A 305 FSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK 342 (470)
T ss_dssp CBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred CccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 36889999999999864222344667899999999864
No 67
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=48.75 E-value=12 Score=35.12 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-...+...|..+|..|++.
T Consensus 296 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp CBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 36899999999999963234455677899999999864
No 68
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=48.53 E-value=11 Score=35.26 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+..-.-.+.+...|+.+|+.|++.
T Consensus 319 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 319 QNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 36899999999999832134555677899999999865
No 69
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=48.29 E-value=11 Score=35.38 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=28.9
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 314 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 314 MTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 36899999999999863233445677899999999874
No 70
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=46.48 E-value=12 Score=35.06 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+..-.-...+...|+.+|+.|++..
T Consensus 306 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (476)
T 3lad_A 306 CATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344 (476)
T ss_dssp SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 368999999999998321334556778999999998643
No 71
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=46.40 E-value=13 Score=35.57 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+..+ .-.+.+...|+.+|+.|++.
T Consensus 342 ~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 342 EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 368999999999998321 23455667899999999864
No 72
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=46.39 E-value=12 Score=35.51 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+|.+||+|.+||.+.+..-.+.+...|+.+|..|++
T Consensus 302 ~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 302 QTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp BCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 589999999999986533344667789999999886
No 73
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=46.25 E-value=8 Score=38.51 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
.+|+|||||-||..+.-| || +.-++..|++|+..+.
T Consensus 381 ~~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa 425 (660)
T 2bs2_A 381 GEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA 425 (660)
T ss_dssp SBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 468999999999954211 22 3335667888776664
No 74
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=46.17 E-value=14 Score=32.12 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=25.3
Q ss_pred CCCCCCcEEEeCCCcCC-C-C-cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFP-G-I-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~p-G-~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.. | . -+..+...|..+|..|..
T Consensus 275 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 275 MATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp CBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence 35889999999999853 1 1 123344577888887764
No 75
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=45.47 E-value=6.9 Score=38.38 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCCCCCcEEEeCCCcCCC-Cc--------chhhhhhHHHHHHHHh
Q 022805 243 HSTPIPQLYCCGDSTFPG-IG--------VPAVAASGAIVANSLV 278 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~G--------v~gv~~SG~~~A~~il 278 (292)
.+|+|||||-+|..+.-| || +.-++..|++|++.+.
T Consensus 368 ~~~~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa 412 (602)
T 1kf6_A 368 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT 412 (602)
T ss_dssp SBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 468999999999975211 12 3446667888877664
No 76
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=45.42 E-value=14 Score=34.52 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.9
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.+||+|.+||.+....-.+.+...|..+|..|++
T Consensus 297 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 297 MRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 3689999999999986422344566789999999987
No 77
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=45.15 E-value=17 Score=32.89 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCCcEEEeC-------CCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 246 PIPQLYCCG-------DSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 246 ~i~nLyl~G-------~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
-+||||++| ++-.+|.=+-|-++||+.+|+.|++.
T Consensus 282 ~~~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~ 323 (326)
T 2gjc_A 282 GVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKH 323 (326)
T ss_dssp TSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHH
Confidence 699999999 55566655666778999999999864
No 78
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=44.38 E-value=14 Score=34.77 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCCcCCC-CcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG-~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+..+ .-.+.+...|+.+|+.|++.
T Consensus 314 ~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 314 EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 368999999999997422 23455667899999999875
No 79
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=44.35 E-value=16 Score=32.40 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCCCCcEEEeCCCcCC-C-C-cchhhhhhHHHHHHHHhc
Q 022805 244 STPIPQLYCCGDSTFP-G-I-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~p-G-~-Gv~gv~~SG~~~A~~il~ 279 (292)
+|.++|+|.+||.+.. | . -+..+...|..+|..|..
T Consensus 287 ~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 287 KTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp BCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence 6899999999999852 1 1 123344567888887764
No 80
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=43.80 E-value=19 Score=33.54 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=30.2
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+.+...|..+|..|++.
T Consensus 297 ~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 297 MRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp CBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 36889999999999864334666778999999988864
No 81
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=43.50 E-value=15 Score=34.33 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 308 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 308 FQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred CccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 35899999999999864223455677899999999875
No 82
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=43.48 E-value=13 Score=36.99 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHHH
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVA 274 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A 274 (292)
+.++||||+||-+.+ .|..-++.+|.+|+
T Consensus 382 k~~~gLf~AGqinGt-tGYeEAaaqGl~AG 410 (651)
T 3ces_A 382 KFIQGLFFAGQINGT-TGYEEAAAQGLLAG 410 (651)
T ss_dssp SSSBTEEECSGGGTC-CCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEecCC-cChHHHHHHHHHHH
Confidence 359999999999976 58776666655544
No 83
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=43.28 E-value=18 Score=34.53 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.... -+..++..|..+|..|..
T Consensus 476 ~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 476 CETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFD 513 (521)
T ss_dssp CBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHH
Confidence 4688999999999996432 355566788888887754
No 84
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=43.23 E-value=10 Score=34.78 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCCCCCcEEEeCCCcCCCC----c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI----G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~----G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+.... | +.-+...|..+|+.|++..
T Consensus 273 ~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 273 CRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322 (415)
T ss_dssp CBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred CCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence 3688999999999985433 2 3456778999999998753
No 85
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=42.85 E-value=5.7 Score=39.28 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCCcEEEeCCCcC---------CCCcchhhhhhHHHHHHHHh
Q 022805 245 TPIPQLYCCGDSTF---------PGIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 245 T~i~nLyl~G~~~~---------pG~Gv~gv~~SG~~~A~~il 278 (292)
|+|||||-||..+. .|..+..+++.|++|++.+.
T Consensus 387 t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa 429 (621)
T 2h88_A 387 KVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIA 429 (621)
T ss_dssp EEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHH
Confidence 78999999998642 12234556777888877764
No 86
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=42.77 E-value=13 Score=34.14 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=29.5
Q ss_pred CCCCCCcEEEeCCCcC-----CCCcchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTF-----PGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-----pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|..||+|.+||++. ++ -+.-+...|+.+|..|++..
T Consensus 253 ~~t~~~~IyA~GD~a~~~~~~~~-~~~~A~~qg~~aa~~i~g~~ 295 (385)
T 3klj_A 253 METSIKDIYACGDVAEFYGKNPG-LINIANKQGEVAGLNACGED 295 (385)
T ss_dssp CBCSSTTEEECGGGEEETTBCCC-CHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCEEEEEeeEecCCCccc-HHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999985 32 23456678999999998753
No 87
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=42.75 E-value=17 Score=32.19 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCCccCCC-CcCCCCCCCCCCcEEEeCCCcCCCCcc
Q 022805 186 RSEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGPAIQAG-KETFPGHSTPIPQLYCCGDSTFPGIGV 263 (292)
Q Consensus 186 ~a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~-~~~~~~~~T~i~nLyl~G~~~~pG~Gv 263 (292)
..+.+++.+.+++ |++ .+ .|....++ .+....+.. ...+.+.....+|||++.... |+|+
T Consensus 255 ~~~~l~~~~~~~~-P~l-~~~~i~~~w~G--------------~r~~t~D~p~~~~~ig~~~~~~~~~~~~G~~--g~G~ 316 (351)
T 3g3e_A 255 DHNTIWEGCCRLE-PTL-KNARIIGERTG--------------FRPVRPQIRLEREQLRTGPSNTEVIHNYGHG--GYGL 316 (351)
T ss_dssp HHHHHHHHHHHHC-GGG-GGCEEEEEEEE--------------EEEECSSCEEEEEEECCSSSCEEEEEEECCT--TCHH
T ss_pred HHHHHHHHHHHhC-CCc-cCCcEeeeeEe--------------eCCCCCCccceeeeccCCCCCCeEEEEeCCC--cchH
Confidence 3567889999999 998 53 44443332 111111200 001112223378999876654 7899
Q ss_pred hhhhhhHHHHHHHHhchh
Q 022805 264 PAVAASGAIVANSLVSVS 281 (292)
Q Consensus 264 ~gv~~SG~~~A~~il~~~ 281 (292)
..+...|...|+.|.+..
T Consensus 317 ~~ap~~g~~la~li~~~~ 334 (351)
T 3g3e_A 317 TIHWGCALEAAKLFGRIL 334 (351)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999987643
No 88
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=42.47 E-value=12 Score=33.97 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=28.3
Q ss_pred CCCCCCcEEEeCCCcCCCCc----chhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIG----VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~G----v~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.+++. +..+...|+.+|+.|++.
T Consensus 265 ~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 265 LRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence 36899999999999864221 233467889999999864
No 89
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=42.01 E-value=17 Score=34.10 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.6
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.+||+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 311 ~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (479)
T 2hqm_A 311 NTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGP 347 (479)
T ss_dssp BCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 6899999999999743123455677899999999864
No 90
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=41.96 E-value=17 Score=33.81 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+-+...|+.+|..|.+.
T Consensus 296 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 296 CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 36889999999999864222444667899999999874
No 91
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=41.58 E-value=15 Score=34.51 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+....-+.-++..|+.+|..|..
T Consensus 405 ~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 405 KMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp CBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence 4589999999999985323456677789999998864
No 92
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=41.07 E-value=18 Score=33.64 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.+||+|.+||.+..-.-.+.+...|+.+|..|++.
T Consensus 292 ~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T 1ges_A 292 NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN 328 (450)
T ss_dssp BCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 6899999999999853133455678899999999864
No 93
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=40.70 E-value=15 Score=36.46 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=24.5
Q ss_pred CC-CCCcEEEeCCCcCCCCcchhhhhhHHHHHHHH
Q 022805 244 ST-PIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 277 (292)
Q Consensus 244 ~T-~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~i 277 (292)
.| .++|||++||-+-. .|..-++.+|.+|+..+
T Consensus 374 e~k~~~gLf~AGqi~g~-~Gy~eA~a~G~~AG~na 407 (641)
T 3cp8_A 374 ETRPVENLFFAGQINGT-SGYEEAAAQGLMAGINA 407 (641)
T ss_dssp BBSSSBTEEECSGGGTB-CCHHHHHHHHHHHHHHH
T ss_pred cccCcCCEEEEEeecCC-ccHHHHHHHHHHHHHHH
Confidence 45 59999999999865 58777777766655444
No 94
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=40.61 E-value=17 Score=36.12 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCCCCCcEEEeCCCcC-CCCc-chhhhhhHHHHHHHH
Q 022805 243 HSTPIPQLYCCGDSTF-PGIG-VPAVAASGAIVANSL 277 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-pG~G-v~gv~~SG~~~A~~i 277 (292)
.+|.|||||-||+.+. .-|| ...+++.|.+++..+
T Consensus 448 ~~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a 484 (662)
T 3gyx_A 448 RMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQM 484 (662)
T ss_dssp TBCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCCeEeCccccccccCccHhHHHHHHHHHHHHH
Confidence 3699999999999873 2245 334455555555444
No 95
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=40.25 E-value=18 Score=34.07 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=29.5
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 305 ~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 305 SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp SBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 36889999999999864222445677899999999875
No 96
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=40.02 E-value=18 Score=33.63 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.1
Q ss_pred CCCCCCcEEEeCCCcC-CCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~-pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+. ...-.+.+...|..+|..|++.
T Consensus 302 ~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 302 FETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK 340 (468)
T ss_dssp SBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence 3689999999999986 2123445667899999999874
No 97
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=39.90 E-value=18 Score=33.71 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=29.2
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+-+...|..+|..|++.
T Consensus 297 ~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 334 (464)
T 2eq6_A 297 METSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGK 334 (464)
T ss_dssp CBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 36889999999999854223445667899999999864
No 98
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=39.83 E-value=27 Score=31.99 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhcCCCCCCCC-ccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcch
Q 022805 187 SEVIWRAVERALGPGFSRD-KCDVKLVGTPLTHQRFLRRNRGTYGP-AIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 264 (292)
Q Consensus 187 a~~ll~~le~~~~P~l~r~-~I~~~~~~TPlT~~~y~~~~~GsyG~-a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~ 264 (292)
.+.+++.+.+++ |++ ++ .|....++ .+.. ..+ ..++.+. .+ +|||++.... |+|+.
T Consensus 345 ~~~l~~~~~~~~-P~l-~~~~~~~~w~G--------------~r~~~t~d--~~p~ig~-~~-~~l~~a~G~~--g~G~~ 402 (448)
T 3axb_A 345 SLAILPILSLYL-PQF-QDAYPSGGWAG--------------HYDISFDA--NPVVFEP-WE-SGIVVAAGTS--GSGIM 402 (448)
T ss_dssp HHHTHHHHHHHC-GGG-TTCCCSEEEEE--------------EEEEETTS--SCEEECG-GG-CSEEEEECCT--TCCGG
T ss_pred HHHHHHHHHHhC-cCc-ccCCcccceEE--------------EeccccCC--CCcEeee-cC-CCEEEEECCC--chhHh
Confidence 567889999999 998 54 44433221 1111 111 0111111 12 8999886554 78999
Q ss_pred hhhhhHHHHHHHHhchh
Q 022805 265 AVAASGAIVANSLVSVS 281 (292)
Q Consensus 265 gv~~SG~~~A~~il~~~ 281 (292)
.+...|...|+.|.+..
T Consensus 403 ~ap~~g~~la~~i~~~~ 419 (448)
T 3axb_A 403 KSDSIGRVAAAVALGME 419 (448)
T ss_dssp GHHHHHHHHHHHHTTCS
T ss_pred HhHHHHHHHHHHHcCCC
Confidence 99999999999998764
No 99
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=39.74 E-value=15 Score=36.19 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCCCCcEEEeCCCcCCC-Ccch-hhhhhHHHHHHHH
Q 022805 244 STPIPQLYCCGDSTFPG-IGVP-AVAASGAIVANSL 277 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG-~Gv~-gv~~SG~~~A~~i 277 (292)
.|+|||||-||..+.-+ ++.. ++++.|+++++.+
T Consensus 428 ~t~I~GLyAaGe~a~~~~~r~~~~sl~~G~~ag~~a 463 (643)
T 1jnr_A 428 MTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAA 463 (643)
T ss_dssp BCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred CceeCCEEeeeccccccccccchhHHHHHHHHHHHH
Confidence 58999999999987422 2222 2344455554443
No 100
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=39.61 E-value=18 Score=33.82 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.1
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+.+...|..+|+.|++.
T Consensus 313 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 313 FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 35889999999999863223445667899999999864
No 101
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=38.85 E-value=19 Score=34.34 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+....-.+.+...|..+|..|++.
T Consensus 341 ~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 378 (523)
T 1mo9_A 341 LQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE 378 (523)
T ss_dssp SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 36899999999999953233455678899999999874
No 102
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=38.79 E-value=20 Score=33.67 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 312 ~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 349 (482)
T 1ojt_A 312 MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH 349 (482)
T ss_dssp SBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence 36889999999999863223455667899999999864
No 103
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=38.30 E-value=11 Score=34.49 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+.... | +.-+...|..+|..|++..
T Consensus 263 ~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 311 (404)
T 3fg2_P 263 LLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA 311 (404)
T ss_dssp SBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred cccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence 3688999999999985422 2 4567778999999998753
No 104
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=38.10 E-value=15 Score=34.06 Aligned_cols=32 Identities=31% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCCcEEEeC---CCcCCCCc--chhhhhhHHHHHHH
Q 022805 245 TPIPQLYCCG---DSTFPGIG--VPAVAASGAIVANS 276 (292)
Q Consensus 245 T~i~nLyl~G---~~~~pG~G--v~gv~~SG~~~A~~ 276 (292)
..+||||||| |..-+=+| +-.+..||+.|++.
T Consensus 380 k~~~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 380 KEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TTSTTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 4799999999 33333235 34567788877654
No 105
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=37.28 E-value=6.1 Score=37.38 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCCCCCCcEEEeCCCcC
Q 022805 242 GHSTPIPQLYCCGDSTF 258 (292)
Q Consensus 242 ~~~T~i~nLyl~G~~~~ 258 (292)
..+|+|||||-+|+.+.
T Consensus 324 ~~~t~ipgLyAaGd~a~ 340 (472)
T 2e5v_A 324 RGESNIVNLYAIGEVSD 340 (472)
T ss_dssp TCBCSSBTEEECGGGEE
T ss_pred CCccccCCEEecchhcc
Confidence 34799999999999875
No 106
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=37.25 E-value=21 Score=33.71 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 318 ~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 318 SRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 36899999999999953123445667899999999874
No 107
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=37.06 E-value=21 Score=33.59 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=29.4
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+..-.-.+.+...|+.+|+.|++.
T Consensus 314 ~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 314 SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 36899999999999952123455677899999999864
No 108
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=36.62 E-value=22 Score=33.18 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=28.4
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.++|+|.+||.+....-.+.+...|+.+|..|++.
T Consensus 291 ~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 327 (463)
T 2r9z_A 291 NTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDG 327 (463)
T ss_dssp BCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 6889999999999853123445667899999999864
No 109
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=36.46 E-value=14 Score=33.77 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=28.4
Q ss_pred CCCcEEEeCCCc-CCCCcchhhhhhHHHHHHHHhc
Q 022805 246 PIPQLYCCGDST-FPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 246 ~i~nLyl~G~~~-~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
..+|+++||... +-+.++..++.||..+|+++++
T Consensus 334 ~~~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~ 368 (384)
T 2bi7_A 334 NETNITFVGRLGTYRYLDMDVTIAEALKTAEVYLN 368 (384)
T ss_dssp TCSSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEccccEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 468999999853 4457899999999999999975
No 110
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=36.23 E-value=15 Score=33.72 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=29.5
Q ss_pred CCCCCcEEEeCCCcCCCC--c-------chhhhhhHHHHHHHHhchh
Q 022805 244 STPIPQLYCCGDSTFPGI--G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~--G-------v~gv~~SG~~~A~~il~~~ 281 (292)
+|.+||+|.+||.+.... | +.-+...|..+|..|++..
T Consensus 264 ~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 310 (410)
T 3ef6_A 264 ATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN 310 (410)
T ss_dssp BCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred eECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence 689999999999985311 1 3567789999999998753
No 111
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=35.99 E-value=17 Score=36.14 Aligned_cols=29 Identities=14% Similarity=-0.017 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCCCCCCCCceEEEEEcc
Q 022805 132 DQNVVLISVPSVLSPDLAPPGKHVLHAYTP 161 (292)
Q Consensus 132 ~~~~~~v~~ps~~Dps~AP~G~~~i~v~t~ 161 (292)
.++.+||.++|. |++.||+|++++++.+.
T Consensus 480 ~~~~V~i~~~Ss-~~~~cP~G~~Vv~lst~ 508 (650)
T 1vg0_A 480 GSFAVRVIELCS-STMTCMKGTYLVHLTCM 508 (650)
T ss_dssp TSCCEEEEEECG-GGTSSCTTCEEEEEEEE
T ss_pred CCCCEEEEEeCC-CCCCCCCCCEEEEEEee
Confidence 357899999988 88999999999999884
No 112
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=35.74 E-value=85 Score=30.37 Aligned_cols=36 Identities=14% Similarity=-0.017 Sum_probs=24.1
Q ss_pred CCCCcEEEeCCCcCCCCc--c--hhhhhhHHHHHHHHhch
Q 022805 245 TPIPQLYCCGDSTFPGIG--V--PAVAASGAIVANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~G--v--~gv~~SG~~~A~~il~~ 280 (292)
-.++|||.++.|++|-.+ = ..+++=|.-+|+.|++.
T Consensus 543 ~Gv~nLrVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~ 582 (587)
T 1gpe_A 543 YGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDD 582 (587)
T ss_dssp TTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcEEeeeccCCCCCCcchHHHHHHHHHHHHHHHHhh
Confidence 579999999999999432 1 12444555666666643
No 113
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=33.55 E-value=18 Score=34.24 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHH----HHHHhch
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIV----ANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~----A~~il~~ 280 (292)
..++|||++||-+-. .|..-++.+|.+| |..+.++
T Consensus 326 k~~~~Lf~AGqi~G~-~Gy~eAaa~Gl~AG~naa~~~~g~ 364 (443)
T 3g5s_A 326 REAEGLYAAGVLAGV-EGYLESAATGFLAGLNAARKALGL 364 (443)
T ss_dssp TTEEEEEECGGGGTB-CSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEECcccccc-HHHHHHHHhHHHHHHHHHHHhcCC
Confidence 359999999999965 5776666665554 5555443
No 114
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=33.29 E-value=23 Score=35.21 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=24.6
Q ss_pred CC-CCCcEEEeCCCcCCCCcchhhhhh----HHHHHHHHhch
Q 022805 244 ST-PIPQLYCCGDSTFPGIGVPAVAAS----GAIVANSLVSV 280 (292)
Q Consensus 244 ~T-~i~nLyl~G~~~~pG~Gv~gv~~S----G~~~A~~il~~ 280 (292)
.| .++|||++||-+-. -|..-++.+ |++||..+.++
T Consensus 385 e~k~~~gLf~AGqinGt-~GyeEAaaqGl~AG~nAa~~~~~~ 425 (637)
T 2zxi_A 385 ETKKIRGLFHAGNFNGT-TGYEEAAGQGIVAGINAALRAFGK 425 (637)
T ss_dssp BBSSSBTEEECGGGGTB-CSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEeeecCCc-chHHHHHHHHHHHHHHHHHHhcCC
Confidence 44 49999999999966 576655554 44555555544
No 115
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=32.85 E-value=23 Score=31.98 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=28.5
Q ss_pred CCCCCCcEEEeCCCcCC-CC---cchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFP-GI---GVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~p-G~---Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.. |. -.+.+...|+.+|..|++.
T Consensus 256 ~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 256 FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 46889999999999853 21 1345667899999999864
No 116
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=32.58 E-value=28 Score=32.39 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.++|+|.+||.+....-.+.+...|..+|..|.+.
T Consensus 293 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 293 CQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 35889999999999864222444567899999999864
No 117
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=32.41 E-value=7.3 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCcC--C-------CCcchhhhhhHHHHHHHHh
Q 022805 246 PIPQLYCCGDSTF--P-------GIGVPAVAASGAIVANSLV 278 (292)
Q Consensus 246 ~i~nLyl~G~~~~--p-------G~Gv~gv~~SG~~~A~~il 278 (292)
+|||||-||..+. . |.++..++..|++|++.+.
T Consensus 379 ~I~GLyAaGe~a~~g~hG~nrl~gnsl~~~~vfG~~Ag~~aa 420 (588)
T 2wdq_A 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_dssp EEEEEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHTHH
T ss_pred eeCCceeCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 8999999998542 1 1124446677888776654
No 118
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=32.29 E-value=35 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=28.4
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+.... | .+-+...|+.+|..|++..
T Consensus 268 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~ 316 (449)
T 3kd9_A 268 MQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE 316 (449)
T ss_dssp CBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999985311 2 2345678889999998753
No 119
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=32.03 E-value=26 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCCCcEEEeCCCcCCCC-cchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGI-GVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~-Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.+||+|.+||.+..+. -++.+...|+.+|..|++.
T Consensus 422 ~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 422 QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 689999999999954222 3455677899999998753
No 120
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=31.95 E-value=24 Score=34.97 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=29.7
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.++|+|.+||.+.|+ .+.-+...|..+|..|...
T Consensus 638 ~t~~~~VyaiGD~~~~~-~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 638 AGEIASVRGIGDAWAPG-TIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp HTSCSEEEECGGGTSCB-CHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCEEEEeCCCchh-hHHHHHHHHHHHHHHHHhh
Confidence 46789999999999884 5555778999999999765
No 121
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=31.73 E-value=11 Score=34.53 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=26.9
Q ss_pred CcEEEeCCC-cCCCCcchhhhhhHHHHHHHHhc
Q 022805 248 PQLYCCGDS-TFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 248 ~nLyl~G~~-~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
+|+|+||.. .+-+.++.+++.||..+|++|..
T Consensus 353 ~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~ 385 (399)
T 1v0j_A 353 SKVLFGGRLGTYQYLDMHMAIASALNMYDNVLA 385 (399)
T ss_dssp HCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHH
T ss_pred CCEEEccceEEEEecCHHHHHHHHHHHHHHHhh
Confidence 799999984 33446899999999999999974
No 122
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=31.63 E-value=24 Score=25.87 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=23.8
Q ss_pred hhhHHHHHHHhcChhHHHHHHHHHHHHHH
Q 022805 15 PTEFYKDLEKYASKNAVQDWKKLLDAILP 43 (292)
Q Consensus 15 ~~~f~~~l~~~f~p~~~~~~~~~~~~~~~ 43 (292)
.+.|.+.|+++|-++|+++|+++...+.+
T Consensus 54 ~~dl~~~L~~~Ft~~e~~e~h~la~~C~~ 82 (90)
T 2knj_A 54 TNNLEQAMSVYFTNEQIKEIHDAATACDP 82 (90)
T ss_dssp HCSTHHHHHHHSCHHHHHHHHHHHHHSCT
T ss_pred CCCHhHHHHHHCCHHHHHHHHHHHHhcCc
Confidence 45688999999999999999988776543
No 123
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=31.60 E-value=22 Score=33.40 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCCCcEEEeCCCcC-CCCcch-hhhhhHHHHHHHHhch
Q 022805 245 TPIPQLYCCGDSTF-PGIGVP-AVAASGAIVANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~-pG~Gv~-gv~~SG~~~A~~il~~ 280 (292)
|.++|+|.+||.+. | .|+. .+...|..+|..|+..
T Consensus 349 t~~pgvya~GD~~~gp-~~~i~~a~~~g~~~a~~i~~~ 385 (456)
T 1lqt_A 349 NGSPNEYVVGWIKRGP-TGVIGTNKKDAQDTVDTLIKN 385 (456)
T ss_dssp TTCSSEEECTHHHHCS-CSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCCCC-chhHHHHHHHHHHHHHHHHHH
Confidence 67899999999974 4 4554 4677888888888654
No 124
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=29.53 E-value=35 Score=33.05 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=28.8
Q ss_pred CCcEEEeCCCcCC-----CCcchhhhhhHHHHHHHHhc
Q 022805 247 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 247 i~nLyl~G~~~~p-----G~Gv~gv~~SG~~~A~~il~ 279 (292)
-+|++++||.+|. |.|+..++.+|+++|+.|..
T Consensus 346 ~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~ 383 (584)
T 2gmh_A 346 FPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFN 383 (584)
T ss_dssp ETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHH
Confidence 4789999999874 78999999999999999864
No 125
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=29.30 E-value=45 Score=29.29 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.7
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH 283 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~~~ 283 (292)
....+|||++.... |+|+..+...|...|+.|.+....
T Consensus 324 ~~~~~~l~~a~G~~--g~G~~~ap~~g~~la~~i~g~~~~ 361 (381)
T 3nyc_A 324 AANAEGFFWVAAQG--GYGIQTSAAMGEASAALIRHQPLP 361 (381)
T ss_dssp CTTSTTEEEEECCT--TCTTTTHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCeEEEEcCC--ChhHhhCHHHHHHHHHHHhCCCCC
Confidence 34578999876654 789999999999999999987644
No 126
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=29.00 E-value=23 Score=32.44 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=29.5
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.++|+|.+||.+.... | +..+...|..+|..|++..
T Consensus 261 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 309 (408)
T 2gqw_A 261 GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT 309 (408)
T ss_dssp CBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTT
T ss_pred CccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCC
Confidence 3688999999999986421 2 2356778999999998753
No 127
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=28.79 E-value=42 Score=30.52 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=29.6
Q ss_pred CCcEEEeCCC-------cCCCCcchhhhhhHHHHHHHHhchhchHHH
Q 022805 247 IPQLYCCGDS-------TFPGIGVPAVAASGAIVANSLVSVSQHSEL 286 (292)
Q Consensus 247 i~nLyl~G~~-------~~pG~Gv~gv~~SG~~~A~~il~~~~~~~~ 286 (292)
+||||.+|-. -.+|+=+-|-++||+.+|+.|+++.+..+.
T Consensus 293 ~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~~~~~~~~ 339 (344)
T 3jsk_A 293 VPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFDLRKA 339 (344)
T ss_dssp ETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHHHHHhhhh
Confidence 7999999953 345554556678999999999877555443
No 128
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=28.48 E-value=28 Score=32.63 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=28.7
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.... | ...+...|..+|..|++.
T Consensus 306 ~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 353 (480)
T 3cgb_A 306 MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK 353 (480)
T ss_dssp SBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC
Confidence 3688999999999985421 2 345667899999999864
No 129
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=28.47 E-value=22 Score=33.06 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.++|+|.+||.+.... | ...+...|..+|+.|++..
T Consensus 282 ~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 330 (472)
T 3iwa_A 282 MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD 330 (472)
T ss_dssp CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 4689999999999983211 1 1235568999999998753
No 130
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=28.36 E-value=13 Score=34.45 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCCCCCcEEEeCCCcCCCC----------cchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPGI----------GVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~----------Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+.+.. -..-+...|+.+|..|++.
T Consensus 267 ~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~ 314 (452)
T 3oc4_A 267 LQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEK 314 (452)
T ss_dssp CBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSC
T ss_pred ccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCC
Confidence 4689999999999986421 2334667888888888764
No 131
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=28.23 E-value=47 Score=30.97 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=28.8
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
|..||||++||.+. +.-++.+-..|+.+|+.|.++.
T Consensus 305 t~~p~i~aiGd~~~-~~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 305 EDNPKFFYIGMQDQ-WYSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp SSSTTEEECSCSCC-SSCHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCEEEEeCccc-ccchHHHHHHHHHHHHHHcCCC
Confidence 77999999999765 3566777788899999888753
No 132
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=28.07 E-value=17 Score=34.19 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=27.1
Q ss_pred CCC-CCcEEEeCCCcC-CCCcc-hhhhhhHHHHHHHHhc
Q 022805 244 STP-IPQLYCCGDSTF-PGIGV-PAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T~-i~nLyl~G~~~~-pG~Gv-~gv~~SG~~~A~~il~ 279 (292)
+|. ++|+|.+||.+. | .|+ ..+...|..+|..|+.
T Consensus 355 rt~~~p~vya~Gd~~~g~-~~~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 355 RVVDVPGLYCSGWVKRGP-TGVITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp EETTCTTEEECTHHHHCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCEEEEEeCCcCC-CccHHHHHHHHHHHHHHHHH
Confidence 455 899999999985 4 464 4577888888888864
No 133
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=27.81 E-value=36 Score=31.43 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|..+|+|.+||.+....-.+.+...|..+|..|++.
T Consensus 291 ~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 291 RTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 5789999999999854222334567889999998764
No 134
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=27.77 E-value=38 Score=34.15 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=29.4
Q ss_pred CCCCcEEEeCCCcCCCCc-chhhhhhHHHHHHHHhch
Q 022805 245 TPIPQLYCCGDSTFPGIG-VPAVAASGAIVANSLVSV 280 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~G-v~gv~~SG~~~A~~il~~ 280 (292)
.+-.++||+|+.+..-+| +-|++.||..|+..|...
T Consensus 642 ~~~gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~ 678 (721)
T 3ayj_A 642 SLDNRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVR 678 (721)
T ss_dssp TTCCCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeehhhccCCceehHHHHHHHHHHHHHHHH
Confidence 356799999999954466 889999999999988653
No 135
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=26.84 E-value=56 Score=32.18 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.8
Q ss_pred CCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhchh
Q 022805 247 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 247 i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|||++.... |+|+..+.++|.+.|+.|++..
T Consensus 618 ~~~l~~a~G~g--~~Gl~~ap~~ae~lA~~i~g~~ 650 (689)
T 3pvc_A 618 WPELFMVGGLG--SRGLCSAPLVAEILAAQMFGEP 650 (689)
T ss_dssp EEEEEEEECCT--TCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCChHHhhccc--ccHHHHHHHHHHHHHHHHcCCC
Confidence 68999988775 6899999999999999998764
No 136
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=25.52 E-value=26 Score=32.31 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.3
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+.... | +.-+...|..+|..|++..
T Consensus 272 ~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 320 (431)
T 1q1r_A 272 MQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV 320 (431)
T ss_dssp SBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence 3688999999999985421 2 2446778999999998753
No 137
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=25.32 E-value=41 Score=31.90 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCCCCCcEEEeCCCcCC-----CC-----cchhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFP-----GI-----GVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~p-----G~-----Gv~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|.+||.+.. |. -..-+...|..+|+.|++..
T Consensus 291 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 291 MQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp CBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999731 11 12235568999999998754
No 138
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=25.25 E-value=59 Score=28.47 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=24.7
Q ss_pred CCCCCcEEEeCCCcCC-CCc---chhhhhhHHHHHHHHhchh
Q 022805 244 STPIPQLYCCGDSTFP-GIG---VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~p-G~G---v~gv~~SG~~~A~~il~~~ 281 (292)
+|.++|+|.+||.+.. +.- +..+-..|..+|+.|.+..
T Consensus 297 ~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 297 STRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp BSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHT
T ss_pred ccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhccc
Confidence 4789999999998854 211 2223345677777776543
No 139
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=24.70 E-value=29 Score=34.68 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=28.9
Q ss_pred CCCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhch
Q 022805 244 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 244 ~T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~~ 280 (292)
+|.++|+|.+||.+.|. -+.-+...|..+|..|...
T Consensus 663 ~t~~~~VyAiGD~~~~~-~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 663 ENDIKGIYLIGDAEAPR-LIADATFTGHRVAREIEEA 698 (729)
T ss_dssp GGTCCEEEECGGGTSCC-CHHHHHHHHHHHHHTTTSS
T ss_pred ccCCCCeEEEeCccchh-hHHHHHHHHHHHHHHhhhh
Confidence 46889999999999874 4555778899999988653
No 140
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=24.56 E-value=56 Score=30.71 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=13.4
Q ss_pred CCCCCCcEEEeCCCc
Q 022805 243 HSTPIPQLYCCGDST 257 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~ 257 (292)
.+|.+||+|.+||.+
T Consensus 300 ~~t~~~~iya~GD~~ 314 (500)
T 1onf_A 300 QRTSVNNIYAVGDCC 314 (500)
T ss_dssp CBCSSSSEEECSTTE
T ss_pred cccCCCCEEEEeccc
Confidence 368899999999998
No 141
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=24.32 E-value=41 Score=31.05 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCCCCCcEEEeCCCcCCC----------CcchhhhhhHHHHHHHHhch
Q 022805 243 HSTPIPQLYCCGDSTFPG----------IGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG----------~Gv~gv~~SG~~~A~~il~~ 280 (292)
.+|.+||+|.+||.+... .-...+...|..+|+.|++.
T Consensus 270 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 317 (452)
T 2cdu_A 270 MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTED 317 (452)
T ss_dssp SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred cCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCC
Confidence 368899999999999631 12345667889999998864
No 142
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=24.30 E-value=41 Score=34.82 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=28.7
Q ss_pred CCCCcEEEeCCCcCCCCcchhhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~Gv~gv~~SG~~~A~~il~ 279 (292)
|.++|+|.+||.+.+ .++..+...|..+|..|++
T Consensus 408 ts~p~IyAaGD~a~~-~~l~~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 408 DAVANQHLAGAMTGR-LDTASALSTGAATGAAAAT 441 (965)
T ss_dssp SCCTTEEECGGGGTC-CSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCc-hhHHHHHHHHHHHHHHHHH
Confidence 789999999999966 5677777889999988865
No 143
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=23.84 E-value=46 Score=30.74 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=27.8
Q ss_pred CCCCCCcEEEeCCCcCCCC---c-------chhhhhhHHHHHHHHhchh
Q 022805 243 HSTPIPQLYCCGDSTFPGI---G-------VPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~pG~---G-------v~gv~~SG~~~A~~il~~~ 281 (292)
.+|.+||+|-+||.+..-. | ...+...|+++|+.|++.+
T Consensus 264 ~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~ 312 (437)
T 4eqs_A 264 FETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND 312 (437)
T ss_dssp CBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCT
T ss_pred ccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCC
Confidence 4699999999999973201 1 2234567899999998754
No 144
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=23.19 E-value=48 Score=31.75 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCCCCCcEEEeCCCcCC-----CC-----cchhhhhhHHHHHHHHhc
Q 022805 243 HSTPIPQLYCCGDSTFP-----GI-----GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T~i~nLyl~G~~~~p-----G~-----Gv~gv~~SG~~~A~~il~ 279 (292)
.+|.++|+|.+||.+.. |. -..-+...|+.+|+.|++
T Consensus 306 ~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 306 FQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp SBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence 46899999999999842 11 112345678999999987
No 145
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=23.02 E-value=46 Score=30.66 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=27.8
Q ss_pred CCcEEEeCCCcCC-----CCcchhhhhhHHHHHHHHhc
Q 022805 247 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 279 (292)
Q Consensus 247 i~nLyl~G~~~~p-----G~Gv~gv~~SG~~~A~~il~ 279 (292)
-+|+.++||.+|. |.|+..++.+|..+|+.|..
T Consensus 281 ~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~ 318 (453)
T 3atr_A 281 WNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILS 318 (453)
T ss_dssp ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4789999998753 78999999999999998853
No 146
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=22.73 E-value=53 Score=31.04 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=22.9
Q ss_pred CCCCcEEEeCCCcCCCCc--ch--hhhhhHHHHHHHHhc
Q 022805 245 TPIPQLYCCGDSTFPGIG--VP--AVAASGAIVANSLVS 279 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~G--v~--gv~~SG~~~A~~il~ 279 (292)
-.++|||.|+.|++|-.+ =| .+++=|.-+|+.|++
T Consensus 465 ~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~ 503 (507)
T 1coy_A 465 PEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIIS 503 (507)
T ss_dssp TTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEeechhccCCCCcChHHHHHHHHHHHHHHHHH
Confidence 469999999999999532 12 233344555666654
No 147
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=22.22 E-value=63 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.8
Q ss_pred CcEEEeCCCcCC-----CCcchhhhhhHHHHHHHHhch
Q 022805 248 PQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 248 ~nLyl~G~~~~p-----G~Gv~gv~~SG~~~A~~il~~ 280 (292)
.++.++||.+|+ |.|+..++.+|...|+.+...
T Consensus 262 grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~ 299 (381)
T 3c4a_A 262 GKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE 299 (381)
T ss_dssp TTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc
Confidence 679999999875 778888999999999888653
No 148
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=22.00 E-value=70 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=28.3
Q ss_pred CcEEEeCCCcCC-----CCcchhhhhhHHHHHHHHhch
Q 022805 248 PQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVSV 280 (292)
Q Consensus 248 ~nLyl~G~~~~p-----G~Gv~gv~~SG~~~A~~il~~ 280 (292)
.++.++||.+|. |.|+..++.+|...|+.|...
T Consensus 301 ~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~ 338 (407)
T 3rp8_A 301 GRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT 338 (407)
T ss_dssp TTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC
Confidence 579999999975 789999999999999988753
No 149
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=21.86 E-value=55 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=25.2
Q ss_pred CCC-CCCcEEEeCCCcCC-CC-cchhhhhhHHHHHHHHhc
Q 022805 243 HST-PIPQLYCCGDSTFP-GI-GVPAVAASGAIVANSLVS 279 (292)
Q Consensus 243 ~~T-~i~nLyl~G~~~~p-G~-Gv~gv~~SG~~~A~~il~ 279 (292)
.+| ..+|+|.+||.+.. .. -...+...|..+|+.|..
T Consensus 294 ~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 294 MVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp SBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 355 79999999999962 11 223355677788887754
No 150
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=21.60 E-value=64 Score=28.30 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhcCCCCCCCCccCCCCcCCCCCCCCCCcEEEeCCCcCCCCcchhh
Q 022805 187 SEVIWRAVERALGPGFSRDKCDVKLVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAV 266 (292)
Q Consensus 187 a~~ll~~le~~~~P~l~r~~I~~~~~~TPlT~~~y~~~~~GsyG~a~~~~~~~~~~~~T~i~nLyl~G~~~~pG~Gv~gv 266 (292)
.+.+++.+.+.+ |++ . .+.... .|.+....+ ..++.+.....+|||++.... |+|+..+
T Consensus 285 ~~~l~~~~~~~~-P~l-~-~~~~~~--------------~g~r~~t~d--~~p~ig~~~~~~~l~~~~G~~--g~G~~~a 343 (372)
T 2uzz_A 285 GSEAFPFLRNVL-PGI-G-CCLYGA--------------ACTYDNSPD--EDFIIDTLPGHDNTLLITGLS--GHGFKFA 343 (372)
T ss_dssp GGSSHHHHHHHS-CSC-C-CEEEEC--------------CCEEEECTT--SCCCEEEETTEEEEEEECCCC--SCCGGGH
T ss_pred HHHHHHHHHHHC-CCC-C-ccceee--------------EEeeccCCC--CCeEEecCCCCCCEEEEeCCC--ccchhcc
Confidence 346888999999 999 6 332221 122222221 112223333478999886654 7899999
Q ss_pred hhhHHHHHHHHhchh
Q 022805 267 AASGAIVANSLVSVS 281 (292)
Q Consensus 267 ~~SG~~~A~~il~~~ 281 (292)
...|...|+.|++..
T Consensus 344 p~~g~~la~~i~~~~ 358 (372)
T 2uzz_A 344 SVLGEIAADFAQDKK 358 (372)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998754
No 151
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=21.19 E-value=75 Score=28.96 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=24.0
Q ss_pred CC-CCCcEEEeCCCcCCCC--------c----chhhhhhHHHHHHHHhc
Q 022805 244 ST-PIPQLYCCGDSTFPGI--------G----VPAVAASGAIVANSLVS 279 (292)
Q Consensus 244 ~T-~i~nLyl~G~~~~pG~--------G----v~gv~~SG~~~A~~il~ 279 (292)
+| .++|+|.+||.+.... | ...+...|..+|+.|..
T Consensus 282 ~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~ 330 (430)
T 3h28_A 282 QNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp BCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 45 7999999999986311 1 12344567777777754
No 152
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=20.41 E-value=52 Score=30.81 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCCcEEEeCCCcCCCC--cchhhhhhHHHHHHHHhchh
Q 022805 245 TPIPQLYCCGDSTFPGI--GVPAVAASGAIVANSLVSVS 281 (292)
Q Consensus 245 T~i~nLyl~G~~~~pG~--Gv~gv~~SG~~~A~~il~~~ 281 (292)
-.++|||.|.+|++|-. |=|. ++-+..|+++.++.
T Consensus 484 ~Gv~nL~VvDaSv~P~~~~~np~--~ti~aiAEkaAd~~ 520 (526)
T 3t37_A 484 KALDNLFVVDASIMPNLTAGPIH--AAVLAIAETFARQY 520 (526)
T ss_dssp TTCSSEEECSGGGCSSCCSSCCH--HHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCcccCCcChHHH--HHHHHHHHHHHHHh
Confidence 36999999999999832 3232 23445666666544
Done!