BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022810
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 1 MPIAIQTDKAKEQ-HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS 59
MP ++ A Q HY+L FF+L L YSC YF TL++A+ A ++L +
Sbjct: 1 MPDELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKL 60
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEII 118
L+ G T+LDVGCGWG+ + +KY + + G+ SK Q +++ E L++ ++
Sbjct: 61 GLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 119
Query: 119 VADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC------- 169
+A F + DRI SI FEH + Y + + D ++ +H
Sbjct: 120 LAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI 177
Query: 170 -HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVN-----GKHYA 223
+ F +I F GG +PS ++ + + + + V HYA
Sbjct: 178 HERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV----QECASANGFTVTRVQSLQPHYA 233
Query: 224 QTSEEWLKRMDNN 236
+T + W + N
Sbjct: 234 KTLDLWSAALQAN 246
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC YF TL++A+ A ++L + LE G T+LD+G
Sbjct: 13 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEPGMTLLDIG 72
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131
CGWG+ +KY + + G+ S+ Q +++ ++ ++ + + +
Sbjct: 73 CGWGATMRRAIEKY-DVNVVGLTLSENQAGHVQKMFDQMDTPRSRRVLLE-GWEKFDEPV 130
Query: 132 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED----TNDDDW 185
DRI SI FEH + Y + + + + D + +H TF E T++
Sbjct: 131 DRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGREKGLTLTHELVH 190
Query: 186 ITKY----FFTGGTMPSANLLLYFQDDVSVVDHWLVNGK-HYAQTSEEWLKRMDNNLASI 240
TK+ F GG +PS + + + V + + + HYA+T + W ++ N
Sbjct: 191 FTKFILAEIFPGGWLPSIPTVHEYAEKVGFRVTAVQSLQLHYARTLDMWATALEAN---- 246
Query: 241 KPIMESTYGKDQAV---KWTVYWR--TFFIAVAELF--GYNNGEEWMV 281
KDQA+ TVY R + A+LF GY + +++ +
Sbjct: 247 ---------KDQAIAIQSQTVYDRYMKYLTGCAKLFRQGYTDVDQFTL 285
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 23/241 (9%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY++ FF L YSC YF TLE+A+ A ++L ++ L+ G T+LD+G
Sbjct: 39 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIG 98
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130
CGWG+ +++ + + G+ SK Q E+ ++ ++ ++++ F
Sbjct: 99 CGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEP 155
Query: 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH------------ 176
DRI SIE FEH +NY + K+ M D + V + +YH
Sbjct: 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV----QSSVSYHPYEMAARGKKLS 211
Query: 177 FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKRMDN 235
FE +I F GG +PS +++ + V L HY +T W + +
Sbjct: 212 FETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQS 271
Query: 236 N 236
N
Sbjct: 272 N 272
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 23/241 (9%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC YF TL++A+ A ++L + L+ G T+LDVG
Sbjct: 13 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLLDVG 72
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEAS 130
CGWG+ +KY + + G+ SK Q +++ E L++ +++A F +
Sbjct: 73 CGWGATXXRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEP 129
Query: 131 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC--------HKTFAYHFEDT 180
DRI SI FEH + Y + + D + +H + F
Sbjct: 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVXLLHTITGLHPKEIHERGLPXSFTFA 189
Query: 181 NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVN-----GKHYAQTSEEWLKRMDN 235
+I F GG +PS + + + + + V HYA+T + W +
Sbjct: 190 RFLKFIVTEIFPGGRLPSIPXV----QECASANGFTVTRVQSLQPHYAKTLDLWSAALQA 245
Query: 236 N 236
N
Sbjct: 246 N 246
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 6/158 (3%)
Query: 12 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 71
+ HY+L FF+L L YSC +F TLE+A+ A ++L + L+ G T+LD+G
Sbjct: 13 QAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGLQPGMTLLDIG 72
Query: 72 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130
CGWG+ +Y + + G+ SK Q +++ ++ ++ +++A F
Sbjct: 73 CGWGATMRRAIAQY-DVNVVGLTLSKNQAAHVQKSFDEMDTPRDRRVLLAGWEQF--NEP 129
Query: 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVH 166
DRI SI FEH + + + + K + D +L +H
Sbjct: 130 VDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLH 167
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 22/240 (9%)
Query: 9 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVL 68
+A HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+L
Sbjct: 18 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLL 77
Query: 69 DVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM 127
D+GCGWGS + +Y + + G+ S+ Q + ++ E+ + I + E
Sbjct: 78 DIGCGWGSTMRHAVAEY-DVNVIGLTLSENQ--YAHDKAMFDEVDSPRRKEVRIQGWEEF 134
Query: 128 EASYDRIYSIEMFEHMKN---------YQNLLKKISKWMKEDTLLFVHHFC--HKTFAYH 176
+ DRI S+ FEH + Y KK +D + +H K A
Sbjct: 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQE 194
Query: 177 FEDTNDDD------WITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEW 229
T+ +I F GG +P + + Y+ + V+ + G +Y T W
Sbjct: 195 LGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAW 254
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 4 AIQTDKAKEQHYELPTSFFKLVLGK--YFKY-----SCCYFSDASKTLEDAEKAMLELYC 56
A T + Q Y+ T F + G+ +F Y + DA+ L D A+L++
Sbjct: 2 AAPTPEEVRQXYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRS 61
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-V 115
G VLDVGCG G ++ +A + ++TGI S+ Q + L N V
Sbjct: 62 -------GDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRV 113
Query: 116 EIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169
AD E AS+D ++++E H + L++ ++ ++ + + F
Sbjct: 114 TFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFV 168
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123
G VL+ GCG G+ ++ +A+ + +IT I S E E ++NV+ + A+I
Sbjct: 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF 97
Query: 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFE 178
+ E +S+D I+ + EH+++ + LK + K +K + V H + +H E
Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPE 153
>pdb|2P35|A Chain A, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
pdb|2P35|B Chain B, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
Length = 259
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 69 DVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128
D+GCG G+ + + +Y ITGI + E ++ L N AD++T++
Sbjct: 39 DLGCGPGNSTELLTDRYGVNVITGIDSDDDXLEKAADR-----LPNTNFGKADLATWKPA 93
Query: 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH---HFCHKTFAYHFEDTNDDDW 185
D +Y+ +F+ + ++ +L ++ ++ +L V + T E + W
Sbjct: 94 QKADLLYANAVFQWVPDHLAVLSQLXDQLESGGVLAVQXPDNLQEPTHIAXHETADGGPW 153
Query: 186 ITKYFFTGGTM------PSANLLLYFQDDVSVVDHWLVNGKHYAQTSE---EWLK 231
K F+GG + P ++ S VD W H + ++ EW+K
Sbjct: 154 --KDAFSGGGLRRKPLPPPSDYFNALSPKSSRVDVWHTVYNHPXKDADSIVEWVK 206
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI 122
G TVLDVG G G LS++ AQ + ++ + S ++ E R L++ V ++ +
Sbjct: 84 GKTVLDVGAGTGILSIFCAQAGAR-RVYAVEASAIWQQ-AREVVRFNGLEDRVHVLPGPV 141
Query: 123 STFEMEASYDRIYSIEM---FEHMKNYQNLLKKISKWMKEDTLLF 164
T E+ D I S M H ++L +KW+KE LL
Sbjct: 142 ETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNS-- 96
+S LE +K + ++ L + VLD+G G G +YI +KY ++ IC++
Sbjct: 37 SSGGLEATKKILSDI-----ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV 91
Query: 97 KTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH--MKNYQNLLKKI 153
E + +++ N DI T E E ++D IYS + H ++N L +K
Sbjct: 92 NMANERVSGNNKIIFEAN------DILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKC 145
Query: 154 SKWMKEDTLLFVHHFC 169
KW+K L + +C
Sbjct: 146 YKWLKPTGTLLITDYC 161
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNS-- 96
+S LE +K + ++ L + VLD+G G G +YI +KY ++ IC++
Sbjct: 37 SSGGLEATKKILSDI-----ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV 91
Query: 97 KTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH--MKNYQNLLKKI 153
E + +++ N DI T E E ++D IYS + H ++N L +K
Sbjct: 92 NMANERVSGNNKIIFEAN------DILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKC 145
Query: 154 SKWMKEDTLLFVHHFC 169
KW+K L + +C
Sbjct: 146 YKWLKPTGTLLITDYC 161
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRV 109
M+ + CE L+ G VL++G G G + A+ + + I E E R
Sbjct: 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
Query: 110 LELQNVEIIVADIS-TFEMEASYDRIYSI--------EMFEHMKNYQNLLKKISKWMKED 160
L NV +IV D + +E A YDRIY+ + +K+ LL + ++++
Sbjct: 125 LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYLQRL 184
Query: 161 TL 162
L
Sbjct: 185 VL 186
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 114
G T++D GCG G S+ +A + CK+ G+ S Q EF + R L + +
Sbjct: 126 GDTLVDAGCGRGG-SMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDD 175
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
+LD+G G G LS ++ +KY T + S+ E + + R V+ I AD S ++
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKYD 105
Query: 127 MEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDD 184
E YD + S H+ ++ + L K+ +KE + H A+ E+ N
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTI 164
Query: 185 W 185
W
Sbjct: 165 W 165
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKT 98
+S LE +K + ++ L + VLD+G G G YI +KY ++ IC++
Sbjct: 37 SSGGLEATKKILSDI-----ELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIV 91
Query: 99 QKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH--MKNYQNLLKKISK 155
RV + DI T E E ++D IYS + H ++N L +K K
Sbjct: 92 NX----ANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYK 147
Query: 156 WMKEDTLLFVHHFC 169
W+K L + +C
Sbjct: 148 WLKPTGTLLITDYC 161
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
+ G +LD+GCG G L+ IAQ S ++ G N+ T E + L VAD
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATXIEKARQNYPHLHFD-----VAD 108
Query: 122 ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171
F ++ D ++S +K + + I + +K FV F K
Sbjct: 109 ARNFRVDKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGG-RFVAEFGGK 157
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 25 VLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84
+LG C +F + + + + L+ L + + D+GCG G ++ +AQ
Sbjct: 9 ILGFDVNLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQH 68
Query: 85 YSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEA-------SYDRIYS 136
KITGI E + L LQN V+ IV + E S IY+
Sbjct: 69 VPG-KITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYN 127
Query: 137 IEMFEHMKNYQNLLKK 152
I +K ++N LK
Sbjct: 128 IGFERGLKEWRNYLKP 143
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 25 VLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84
+LG C +F + + + + L+ L + + D+GCG G ++ +AQ
Sbjct: 14 ILGFDVNLICDFFLNTERQGPGSPEVTLKALSFIDNLTNKSLIADLGCGTGGQTMILAQH 73
Query: 85 YSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEA-------SYDRIYS 136
KITGI E + L LQN V+ IV + E S IY+
Sbjct: 74 VPG-KITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFEKDSLDLIWSEGAIYN 132
Query: 137 IEMFEHMKNYQNLLKK 152
I +K ++N LK
Sbjct: 133 IGFERGLKEWRNYLKP 148
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNS-- 96
+S LE +K + ++ L + VLD+G G G +YI +KY ++ IC++
Sbjct: 37 SSGGLEATKKILSDI-----ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV 91
Query: 97 KTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIE--MFEHMKNYQNLLKKI 153
E + +++ N DI T E E ++D IYS + + ++N L +K
Sbjct: 92 NMANERVSGNNKIIFEAN------DILTKEFPENNFDLIYSRDAILALSLENKNKLFQKC 145
Query: 154 SKWMKEDTLLFVHHFC 169
KW+K L + +C
Sbjct: 146 YKWLKPTGTLLITDYC 161
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119
++E G + D+GCG G+ +L +A Y ++TG+ S+ E +E+ ++V+ V
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLADHY---EVTGVDLSEEXLEIAQEKAXETN-RHVDFWV 85
Query: 120 ADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHH------- 167
D E+ D I S+ + + + ++ + + LLF H
Sbjct: 86 QDXRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKXET 145
Query: 168 -FCHKTFAYHFEDTN 181
F KT+A H E ++
Sbjct: 146 LFNGKTYATHAEQSS 160
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEII 118
L G L++G G + A+K+ NCK+T ++ +EF E R +E NV ++
Sbjct: 53 LRGGEVALEIGTGHTAXXALXAEKFFNCKVTA---TEVDEEFFEYARRNIERNNSNVRLV 109
Query: 119 VADISTFE--MEASYDRIYS 136
++ + +E ++D I+S
Sbjct: 110 KSNGGIIKGVVEGTFDVIFS 129
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 30 FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89
F + C YF + + +A + + L D + D+GCG G +L++A Y +
Sbjct: 13 FSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLAD-YVKGQ 71
Query: 90 ITGI 93
ITGI
Sbjct: 72 ITGI 75
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 30 FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89
F + C YF + + +A + + L D + D+GCG G +L++A Y +
Sbjct: 19 FSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLAD-YVKGQ 77
Query: 90 ITGI 93
ITGI
Sbjct: 78 ITGI 81
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
+LD+G G G+++L +A + +C+I + + + L ++N+ I+ +D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD 167
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121
+LD+G G G+++L +A + +C+I + + + L ++N+ I+ +D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD 167
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 16 ELPTSFFKLVLGKYFKYS--CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 73
LP + FK K F+Y C Y+ + + ED +L+ R G VLD+GC
Sbjct: 3 PLPAAGFKKQQRK-FQYGNYCKYYGYRNPSCEDGRLRVLKPEWFR-----GRDVLDLGCN 56
Query: 74 WGSLSLYIAQKYSNCKITGI 93
G L+L IA K+ + G+
Sbjct: 57 VGHLTLSIACKWGPSRXVGL 76
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 16 ELPTSFFKLVLGK-----YFKYSCCYFSDASKTLEDAEKAMLELYCERSRL----EDGHT 66
E T K++ GK + +Y C + D +K + + +E ER R+ +
Sbjct: 68 EFRTPHVKILYGKETETIHKEYGCLFKLDVAKIM--WSQGNIE---ERKRMAFISNENEV 122
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKIT-GICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125
V+D+ G G ++ +A KYS K+ I + T ++ E ++ +L NV I+AD
Sbjct: 123 VVDMFAGIGYFTIPLA-KYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV 181
Query: 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 175
E++ DR+ + ++ L K +++K+ ++ H + Y
Sbjct: 182 ELKDVADRV----IMGYVHKTHKFLDKTFEFLKDRGVIHYHETVAEKIMY 227
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF- 125
VLDVGCG G LS+ A+ ++T +C+ +E L VE V + F
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLT-LCD--VSAPAVEASRATLAANGVEGEVFASNVFS 256
Query: 126 EMEASYDRIYSIEMF 140
E++ +D I S F
Sbjct: 257 EVKGRFDXIISNPPF 271
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 41 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIA-QKYSNCKITGI 93
++T++ + A E +++ G +L++GCG G LS +A Q S+ +TGI
Sbjct: 21 ARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
VLD+GC G+L I K + +++GI E +E+ +++ DI T +
Sbjct: 36 VLDIGCSSGALGAAI--KENGTRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETXD 86
Query: 127 M---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165
E +D + ++ EH+ + +++K+ ++K++ ++
Sbjct: 87 XPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
S L +G +LD+ G G+ +Y+A++ N K EF E R +NVEI
Sbjct: 286 SELVEGEKILDMYSGVGTFGIYLAKRGFNVK------GFDSNEFAIEMAR----RNVEIN 335
Query: 119 VADISTFEMEASYDRIYSIEMFE 141
D E E + DR S++ F+
Sbjct: 336 NVDA---EFEVASDREVSVKGFD 355
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
S L +G +LD+ G G+ +Y+A++ N K EF E R +NVEI
Sbjct: 286 SELVEGEKILDMYSGVGTFGIYLAKRGFNVK------GFDSNEFAIEMAR----RNVEIN 335
Query: 119 VADISTFEMEASYDRIYSIEMFE 141
D E E + DR S++ F+
Sbjct: 336 NVDA---EFEVASDREVSVKGFD 355
>pdb|2I6G|A Chain A, Crystal Structure Of A Putative Methyltransferase (Tehb,
Stm1608) From Salmonella Typhimurium Lt2 At 1.90 A
Resolution
pdb|2I6G|B Chain B, Crystal Structure Of A Putative Methyltransferase (Tehb,
Stm1608) From Salmonella Typhimurium Lt2 At 1.90 A
Resolution
Length = 199
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
LD+GCG G SLY+A + +T + +E L N++ + D++T
Sbjct: 35 TLDLGCGNGRNSLYLAA--NGYDVTAWDXNPASXANLERIXAAEGLDNLQTDLVDLNTLT 92
Query: 127 MEASYDRIYS 136
+ YD I S
Sbjct: 93 FDGEYDFILS 102
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127
LD+GCG G SLY+A + + + +E + L N+ V D++
Sbjct: 38 LDLGCGNGRNSLYLAA--NGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 95
Query: 128 EASYDRIYS--IEMFEHMKNYQNLLKKISKWMK 158
+ YD I S + MF K L+ + + K
Sbjct: 96 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTK 128
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-----VEI 117
+G TVLDVG G G L+++ AQ + K+ + +K + + R L N VE+
Sbjct: 63 EGKTVLDVGTGSGILAIWSAQAGAR-KVYAVEATK-----MADHARALVKANNLDHIVEV 116
Query: 118 IVADISTFEMEASYDRIYS-----IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167
I + + D I S + E M + +++ +W+K +++ H
Sbjct: 117 IEGSVEDISLPEKVDVIISEWMGYFLLRESM--FDSVISARDRWLKPTGVMYPSH 169
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
VLDVGCG G LS++ A K K+ G+ Q E + + ++ L +E
Sbjct: 67 VVLDVGCGTGILSMF-AAKAGAKKVLGV----DQSEILYQAMDIIRLNKLE 112
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 33 SCCYFSDASKTLEDAEKAMLELY-----CERSRLEDGHTVLDVGCGWGSLSLYIAQKYS- 86
S + D SK + + + LEL+ + L++G TVLDVG G G Y+++
Sbjct: 2 SLAHKFDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGE 61
Query: 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEII 118
K+ I + + E+ L L+NVE++
Sbjct: 62 KGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI 93
L++ +LD+GCG G +SL +A K +TGI
Sbjct: 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGI 58
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 27 GKYFKYSCCYFSDASKTLEDAEKAM---LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83
G +Y C ++A+ +DA+ A+ +E Y + RL V D S+S IA
Sbjct: 130 GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL---IMVCD------SMSPIIAP 180
Query: 84 KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI-YSIEMFEH 142
S C + C + + E V+ + +++ DI +AS + S+ M E
Sbjct: 181 IKSQCLLIR-CPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 143 MK-NYQNLLKKISKWMKEDTLLFVHHFCHK 171
M N + LK S +K D ++ +H K
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRK 269
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127
LD+GCG G SLY+A + + + +E + L N+ V D++
Sbjct: 37 LDLGCGNGRNSLYLAA--NGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94
Query: 128 EASYDRIYS--IEMFEHMKNYQNLLKKISKWMK 158
+ YD I S + MF K L+ + + K
Sbjct: 95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTK 127
>pdb|3M70|A Chain A, Crystal Structure Of Tehb From Haemophilus Influenzae
Length = 286
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
VLD+GCG G SLY++ +T +++ F+ E + E N+ + DI+
Sbjct: 124 VLDLGCGQGRNSLYLS--LLGYDVTSWDHNENSIAFLNE-TKEKENLNISTALYDINAAN 180
Query: 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161
++ +YD I S +F + + + I K KE T
Sbjct: 181 IQENYDFIVSTVVFXFLN--RERVPSIIKNXKEHT 213
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124
H VLD+G G G +L + C G+ KE +E + + VE + T
Sbjct: 23 HRVLDIGAGAGHTALAFSPYVQEC--IGV---DATKEXVEVASSFAQEKGVENVRFQQGT 77
Query: 125 FE----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHHFC 169
E + S+D I H + + ++++++ +K+D L V H+
Sbjct: 78 AESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 67 VLDVGCGWGSLS--LYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124
VL+ G G G+L+ L +A + + GI S+ + +E+ + I D +
Sbjct: 49 VLEFGVGTGNLTNKLLLAGR----TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLS 100
Query: 125 FEMEASYDRIYSIEMFEHMKN---------YQNLLKKISKWMKEDTLL 163
FE+ S D I S F H+ + Y LL K K + DT+
Sbjct: 101 FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148
>pdb|1XVI|A Chain A, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
pdb|1XVI|B Chain B, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
Length = 275
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 84 KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143
+ +N + +C+SKT E + Q + L LQ + +I + + ++ E ++ +
Sbjct: 39 REANVPVI-LCSSKTSAEMLYLQ-KTLGLQGLPLIAENGAVIQLA---------EQWQEI 87
Query: 144 KNYQNLLKKISKW---MKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSAN 200
+ ++ IS + +TL HF TF D DD I ++ TG + A
Sbjct: 88 DGFPRIISGISHGEISLVLNTLREKEHFKFTTF-----DDVDDATIAEW--TGLSRSQAA 140
Query: 201 LLLYFQDDVSVVDHWLVNGKHYAQ----TSEEWLKRMDNNLASIKPIMESTYGKDQAVKW 256
L + V+++ W + + AQ +E L+ M A +++++ GKDQA W
Sbjct: 141 LTQLHEASVTLI--WRDSDERMAQFTARLNELGLQFMQG--ARFWHVLDASAGKDQAANW 196
Query: 257 TV 258
+
Sbjct: 197 II 198
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 18/158 (11%)
Query: 38 SDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 96
DA++ + E Y SR L VLD+GC G SL +A K I GI
Sbjct: 40 GDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASK--GATIVGI--- 94
Query: 97 KTQKEFIEEQCRVLELQN--------VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQN 148
Q+E I CR L +N V I I+ E E +D + +F H+ +
Sbjct: 95 DFQQENI-NVCRALAEENPDFAAEFRVGRIEEVIAALE-EGEFDLAIGLSVFHHIVHLHG 152
Query: 149 L--LKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDD 184
+ +K++ + + T + K +++ + DD
Sbjct: 153 IDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDD 190
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADIST 124
VLDVG G G L ++ A+ + K+ GI C+S + + L+ V II +
Sbjct: 73 VVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLD-HVVTIIKGKVEE 130
Query: 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKI----SKWMKEDTLLF 164
E+ I E + YQ++L + KW+ D L+F
Sbjct: 131 VELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIF 174
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 18/158 (11%)
Query: 38 SDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 96
DA++ + E Y SR L VLD+GC G SL +A K I GI
Sbjct: 40 GDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASK--GATIVGI--- 94
Query: 97 KTQKEFIEEQCRVLELQN--------VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQN 148
Q+E I CR L +N V I I+ E E +D + +F H+ +
Sbjct: 95 DFQQENI-NVCRALAEENPDFAAEFRVGRIEEVIAALE-EGEFDLAIGLSVFHHIVHLHG 152
Query: 149 L--LKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDD 184
+ +K++ + + T + K +++ + DD
Sbjct: 153 IDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDD 190
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 18/158 (11%)
Query: 38 SDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 96
DA++ + E Y SR L VLD+GC G SL +A K I GI
Sbjct: 40 GDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASK--GATIVGI--- 94
Query: 97 KTQKEFIEEQCRVLELQN--------VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQN 148
Q+E I CR L +N V I I+ E E +D + +F H+ +
Sbjct: 95 DFQQENI-NVCRALAEENPDFAAEFRVGRIEEVIAALE-EGEFDLAIGLSVFHHIVHLHG 152
Query: 149 L--LKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDD 184
+ +K++ + + T + K +++ + DD
Sbjct: 153 IDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDD 190
>pdb|3M0H|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With L-Rhamnose
pdb|3M0H|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With L-Rhamnose
pdb|3M0H|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With L-Rhamnose
pdb|3M0H|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With L-Rhamnose
pdb|3M0L|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Psicose
pdb|3M0L|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Psicose
pdb|3M0L|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Psicose
pdb|3M0L|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Psicose
pdb|3M0M|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Allose
pdb|3M0M|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Allose
pdb|3M0M|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Allose
pdb|3M0M|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329f In Complex With D-Allose
Length = 438
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|3M0V|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With L-Rhamnose
pdb|3M0V|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With L-Rhamnose
pdb|3M0V|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With L-Rhamnose
pdb|3M0V|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With L-Rhamnose
pdb|3M0X|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With D-Psicose
pdb|3M0X|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With D-Psicose
pdb|3M0X|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With D-Psicose
pdb|3M0X|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329l In Complex With D-Psicose
Length = 438
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|3ITL|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITL|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With L-Rhamnulose
pdb|3ITO|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
pdb|3ITO|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant D327n In Complex With D-Psicose
Length = 438
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|4GJI|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJJ|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
Length = 438
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|3M0Y|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329a In Complex With L-Rhamnose
pdb|3M0Y|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329a In Complex With L-Rhamnose
pdb|3M0Y|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329a In Complex With L-Rhamnose
pdb|3M0Y|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329a In Complex With L-Rhamnose
Length = 438
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|2HCV|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2HCV|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With Metal Ion
pdb|2I56|A Chain A, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|B Chain B, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|C Chain C, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I56|D Chain D, Crystal Structure Of L-Rhamnose Isomerase From Pseudomonas
Stutzeri With L-Rhamnose
pdb|2I57|A Chain A, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|B Chain B, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|C Chain C, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|2I57|D Chain D, Crystal Structure Of L-rhamnose Isomerase From Pseudomonas
Stutzeri In Complex With D-allose
pdb|3ITX|A Chain A, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|B Chain B, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|C Chain C, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITX|D Chain D, Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|A Chain A, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|B Chain B, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|C Chain C, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3ITY|D Chain D, Metal-Free Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|A Chain A, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|B Chain B, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|C Chain C, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUD|D Chain D, Cu2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|A Chain A, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|B Chain B, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|C Chain C, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUH|D Chain D, Co2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|A Chain A, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|B Chain B, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|C Chain C, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
pdb|3IUI|D Chain D, Zn2+-Bound Form Of Pseudomonas Stutzeri L-Rhamnose
Isomerase
Length = 438
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|3ITT|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With L-Rhamnose
pdb|3ITT|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With L-Rhamnose
pdb|3ITT|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With L-Rhamnose
pdb|3ITT|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With L-Rhamnose
pdb|3ITV|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With D-Psicose
pdb|3ITV|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With D-Psicose
pdb|3ITV|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With D-Psicose
pdb|3ITV|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant S329k In Complex With D-Psicose
Length = 438
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 94 CNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ 147
N+ T+ + +E +E+ + + + + D S F ++++ R + + Y
Sbjct: 149 TNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDGSNFPGQSNFTRAF--------ERYL 200
Query: 148 NLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL 203
+ + +I K + +D LF H K + F T DW T Y P A L+
Sbjct: 201 SAMAEIYKGLPDDWKLFSEH---KMYEPAFYSTVVQDWGTNYLIAQTLGPKAQCLV 253
>pdb|3JWI|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-Cn
pdb|3JWI|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-Cn
Length = 207
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122
+ V+D+GCG G+L + + S +ITG+ S + E +++ ++ L E+ I
Sbjct: 27 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP--EMQRKRI 84
Query: 123 STFEME--------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL--LFVHHFCHKT 172
S F+ + YD IE+ EH+ +N L+ K + E T + +K
Sbjct: 85 SLFQSSLVYRDKRFSGYDAATVIEVIEHLD--ENRLQAFEKVLFEFTRPQTVIVSTPNKE 142
Query: 173 FAYHFED 179
+ +H+++
Sbjct: 143 YNFHYQN 149
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 114
E ++ T+ D+GCG+G L + ++ + I G+ ++E+ R++ L+N
Sbjct: 42 AENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVED--RIIALRN 98
>pdb|2WA1|A Chain A, Structure Of The Methyltransferase Domain From Modoc
Virus, A Flavivirus With No Known Vector (Nkv)
pdb|2WA1|B Chain B, Structure Of The Methyltransferase Domain From Modoc
Virus, A Flavivirus With No Known Vector (Nkv)
pdb|2WA2|A Chain A, Structure Of The Methyltransferase Domain From Modoc
Virus, A Flavivirus With No Known Vector (Nkv)
pdb|2WA2|B Chain B, Structure Of The Methyltransferase Domain From Modoc
Virus, A Flavivirus With No Known Vector (Nkv)
Length = 276
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQK 84
ER +E TV+D+GCG GS S Y A +
Sbjct: 76 ERGGVELKGTVVDLGCGRGSWSYYAASQ 103
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 116
VLDVGCG G LS++ A K K+ + Q E + + ++ L +E
Sbjct: 48 VVLDVGCGTGILSMF-AAKAGAKKVIAV----DQSEILYQAMDIIRLNKLE 93
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83
+L+ E +E+G+TV++VG G G+L+ + Q
Sbjct: 17 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQ 50
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna And Sah
Length = 249
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 83
+L+ E +E+G+TV++VG G G+L+ + Q
Sbjct: 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQ 51
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 114
E ++ T+ D+GCG+G L + ++ + I G+ ++E+ R++ L+N
Sbjct: 50 AENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVED--RIIALRN 106
>pdb|4H0Y|A Chain A, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 418
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 97 KTQKEFIEEQCRVLELQNVEIIVAD---ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
K + E +E+ LE + +E+ D IS + Y Y IE K Y+NL I
Sbjct: 26 KKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAI 85
Query: 154 SKWMKEDTLLFVHHF-CHKTFAYHFE 178
SK K D + V++F + FA++ E
Sbjct: 86 SK-NKIDKPINVYYFESPEKFAFNKE 110
>pdb|4H0V|A Chain A, Crystal Structure Of Nad+-ia(e378s)-actin Complex
Length = 418
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 97 KTQKEFIEEQCRVLELQNVEIIVAD---ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
K + E +E+ LE + +E+ D IS + Y Y IE K Y+NL I
Sbjct: 26 KKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAI 85
Query: 154 SKWMKEDTLLFVHHF-CHKTFAYHFE 178
SK K D + V++F + FA++ E
Sbjct: 86 SK-NKIDKPINVYYFESPEKFAFNKE 110
>pdb|4H0X|A Chain A, Crystal Structure Of Nad+-ia(e380a)-actin Complex
Length = 418
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 97 KTQKEFIEEQCRVLELQNVEIIVAD---ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
K + E +E+ LE + +E+ D IS + Y Y IE K Y+NL I
Sbjct: 26 KKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAI 85
Query: 154 SKWMKEDTLLFVHHF-CHKTFAYHFE 178
SK K D + V++F + FA++ E
Sbjct: 86 SK-NKIDKPINVYYFESPEKFAFNKE 110
>pdb|4GY2|A Chain A, Crystal Structure Of Apo-ia-actin Complex
pdb|4H03|A Chain A, Crystal Structure Of Nad+-ia-actin Complex
pdb|4H0T|A Chain A, Crystal Structure Of Ia-adpr-actin Complex
Length = 418
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 97 KTQKEFIEEQCRVLELQNVEIIVAD---ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
K + E +E+ LE + +E+ D IS + Y Y IE K Y+NL I
Sbjct: 26 KKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAI 85
Query: 154 SKWMKEDTLLFVHHF-CHKTFAYHFE 178
SK K D + V++F + FA++ E
Sbjct: 86 SK-NKIDKPINVYYFESPEKFAFNKE 110
>pdb|1GIQ|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIQ|B Chain B, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIR|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadph
pdb|3BUZ|A Chain A, Crystal Structure Of Ia-Btad-Actin Complex
Length = 413
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 97 KTQKEFIEEQCRVLELQNVEIIVAD---ISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI 153
K + E +E+ LE + +E+ D IS + Y Y IE K Y+NL I
Sbjct: 21 KKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAI 80
Query: 154 SKWMKEDTLLFVHHF-CHKTFAYHFE 178
SK K D + V++F + FA++ E
Sbjct: 81 SK-NKIDKPINVYYFESPEKFAFNKE 105
>pdb|3JWG|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-C
Length = 219
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126
V+D+GCG G+L + + S +ITG+ S + E +++ ++ L E+ IS F+
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP--EMQRKRISLFQ 90
Query: 127 ME--------ASYDRIYSIEMFEHM 143
+ YD IE+ EH+
Sbjct: 91 SSLVYRDKRFSGYDAATVIEVIEHL 115
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADIST 124
VLDVG G G L ++ A+ + K+ GI C+S + + L+ V II +
Sbjct: 69 VVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLD-HVVTIIKGKVEE 126
Query: 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKI----SKWMKEDTLLF 164
E+ I E + Y+++L + KW+ D L+F
Sbjct: 127 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEI 117
+ V+D+GCG G+L + + +ITG+ S E +E+ L L + +++
Sbjct: 19 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 78
Query: 118 IVADISTFEME-ASYDRIYSIEMFEHM 143
I ++ + YD IE+ EH+
Sbjct: 79 IQGALTYQDKRFHGYDAATVIEVIEHL 105
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADIST 124
VLDVG G G L ++ A+ + K+ GI C+S + + L+ V II +
Sbjct: 60 VVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLD-HVVTIIKGKVEE 117
Query: 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKI----SKWMKEDTLLF 164
E+ I E + Y+++L + KW+ D L+F
Sbjct: 118 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 161
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADIST 124
VLDVG G G L ++ A+ + K+ GI C+S + + L+ V II +
Sbjct: 63 VVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLD-HVVTIIKGKVEE 120
Query: 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKI----SKWMKEDTLLF 164
E+ I E + Y+++L + KW+ D L+F
Sbjct: 121 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 164
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEI 117
+ V+D+GCG G+L + + +ITG+ S E +E+ L L + +++
Sbjct: 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88
Query: 118 IVADISTFEME-ASYDRIYSIEMFEHM 143
I ++ + YD IE+ EH+
Sbjct: 89 IQGALTYQDKRFHGYDAATVIEVIEHL 115
>pdb|3E05|A Chain A, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|B Chain B, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|C Chain C, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|D Chain D, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|E Chain E, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|F Chain F, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|G Chain G, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
pdb|3E05|H Chain H, Crystal Structure Of Precorrin-6y C5,15-Methyltransferase
From Geobacter Metallireducens Gs-15
Length = 204
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 37 FSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 96
F+ A K + E + L + RL+D + D+G G S+S+ + N +I + +
Sbjct: 16 FATAKKLITKQEVRAVTL--SKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERN 73
Query: 97 KTQKEFIEEQCRVLELQNVEIIVA 120
FI + + +NV ++ A
Sbjct: 74 PQYLGFIRDNLKKFVARNVTLVEA 97
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST 124
T +D+G G G+LS+ +A K S+ I + SK E + L + ++I+ D+
Sbjct: 46 TCIDIGSGPGALSIALA-KQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHN 104
Query: 125 FEMEASY 131
+E +Y
Sbjct: 105 IPIEDNY 111
>pdb|1XDZ|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis
Glucose Inhibited Division Protein B (Gidb), Structural
Genomics, Mcsg
Length = 240
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 114
+T+ DVG G G SL I + + +T + + + F+E+ L+L+N
Sbjct: 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN 121
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN 145
NC +G SKT +E I+ R+ + NV+I + D ST + Y + + +H +N
Sbjct: 41 GNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPL-DFSTVQDRKDY--VQELRFKQHKRN 97
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91
+ C F D +L D EK +L C+ ++ DV G +YSN KIT
Sbjct: 174 FRCKDFMDLYGSLSDEEKEILTDACKIFVIKGK----DVALAKG--------EYSNLKIT 221
Query: 92 GICNSKTQKEFIEE 105
+ + K K IE+
Sbjct: 222 TVTDLKIAKSMIEK 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,206,809
Number of Sequences: 62578
Number of extensions: 381553
Number of successful extensions: 1163
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 84
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)