Query 022810
Match_columns 291
No_of_seqs 366 out of 3430
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 2.1E-47 4.5E-52 320.4 28.2 268 3-288 12-283 (283)
2 PF02353 CMAS: Mycolic acid cy 100.0 8.5E-48 1.8E-52 328.2 24.0 265 5-284 4-273 (273)
3 PRK11705 cyclopropane fatty ac 100.0 1.8E-39 3.9E-44 290.2 29.3 260 7-289 112-373 (383)
4 PLN02244 tocopherol O-methyltr 99.9 5.6E-25 1.2E-29 194.8 28.5 163 7-172 57-228 (340)
5 COG4106 Tam Trans-aconitate me 99.9 3.3E-24 7.2E-29 170.2 6.1 211 52-267 19-254 (257)
6 smart00828 PKS_MT Methyltransf 99.9 9.9E-22 2.1E-26 164.7 19.1 202 65-291 1-205 (224)
7 PTZ00098 phosphoethanolamine N 99.9 2E-20 4.4E-25 160.0 24.0 246 10-289 12-263 (263)
8 COG2226 UbiE Methylase involve 99.9 1.4E-21 3E-26 162.0 15.1 151 8-172 10-161 (238)
9 PLN02336 phosphoethanolamine N 99.9 1.3E-19 2.7E-24 168.2 27.0 217 52-289 255-475 (475)
10 PF01209 Ubie_methyltran: ubiE 99.9 1.4E-21 3.1E-26 163.5 11.8 154 6-173 4-159 (233)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 7.2E-21 1.6E-25 155.0 8.6 110 62-174 58-168 (243)
12 PLN02233 ubiquinone biosynthes 99.8 2.5E-19 5.3E-24 153.2 16.7 153 6-172 30-187 (261)
13 PF12847 Methyltransf_18: Meth 99.8 8.1E-20 1.8E-24 136.2 12.1 105 63-167 1-111 (112)
14 PF13847 Methyltransf_31: Meth 99.8 2.3E-19 5.1E-24 141.2 13.2 108 62-169 2-112 (152)
15 PRK14103 trans-aconitate 2-met 99.8 5.8E-19 1.3E-23 150.8 13.4 114 50-170 16-129 (255)
16 TIGR02752 MenG_heptapren 2-hep 99.8 3.5E-18 7.5E-23 143.9 16.2 118 53-170 35-154 (231)
17 PRK01683 trans-aconitate 2-met 99.8 8.7E-18 1.9E-22 143.8 18.7 115 50-169 18-132 (258)
18 PRK11207 tellurite resistance 99.8 2.2E-18 4.8E-23 141.4 14.0 110 55-166 22-133 (197)
19 PLN02396 hexaprenyldihydroxybe 99.8 2E-18 4.3E-23 150.7 13.9 107 62-170 130-238 (322)
20 PRK00107 gidB 16S rRNA methylt 99.8 9.8E-18 2.1E-22 135.6 16.4 115 50-168 32-146 (187)
21 PF08241 Methyltransf_11: Meth 99.8 1.4E-18 3.1E-23 125.2 9.7 94 68-165 1-95 (95)
22 PRK11036 putative S-adenosyl-L 99.8 5.7E-18 1.2E-22 144.6 13.5 117 52-171 34-153 (255)
23 PRK10258 biotin biosynthesis p 99.8 8.8E-18 1.9E-22 143.2 13.9 140 8-173 6-146 (251)
24 PF05175 MTS: Methyltransferas 99.8 3.6E-17 7.9E-22 131.0 16.3 130 33-168 7-141 (170)
25 KOG1270 Methyltransferases [Co 99.8 1.3E-18 2.9E-23 142.7 7.7 106 64-173 90-201 (282)
26 TIGR00477 tehB tellurite resis 99.8 1.2E-17 2.6E-22 136.7 13.3 109 56-167 23-133 (195)
27 PF03848 TehB: Tellurite resis 99.8 3.5E-17 7.6E-22 131.6 14.4 112 55-169 22-135 (192)
28 TIGR00138 gidB 16S rRNA methyl 99.7 4.5E-17 9.7E-22 131.5 14.9 101 63-167 42-142 (181)
29 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.4E-17 3.1E-22 145.8 12.8 115 51-168 100-216 (340)
30 KOG1540 Ubiquinone biosynthesi 99.7 3.9E-17 8.5E-22 133.3 14.0 120 53-172 90-219 (296)
31 TIGR02469 CbiT precorrin-6Y C5 99.7 1.6E-16 3.4E-21 120.4 15.1 115 51-168 7-123 (124)
32 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.1E-16 2.3E-21 136.0 14.3 107 61-168 54-165 (247)
33 TIGR00452 methyltransferase, p 99.7 1.4E-16 3.1E-21 138.5 15.2 119 51-170 109-228 (314)
34 PRK15068 tRNA mo(5)U34 methylt 99.7 1.4E-16 3.1E-21 139.9 14.9 118 52-170 111-229 (322)
35 PF08242 Methyltransf_12: Meth 99.7 2.7E-18 5.8E-23 125.2 2.6 96 68-163 1-99 (99)
36 PRK11873 arsM arsenite S-adeno 99.7 2.5E-16 5.4E-21 135.9 14.6 111 59-169 73-185 (272)
37 PRK12335 tellurite resistance 99.7 2.2E-16 4.8E-21 137.0 13.5 103 62-167 119-223 (287)
38 TIGR02072 BioC biotin biosynth 99.7 2.5E-16 5.4E-21 133.0 13.5 120 48-171 16-139 (240)
39 PRK08317 hypothetical protein; 99.7 6.3E-16 1.4E-20 130.5 15.6 118 52-170 8-127 (241)
40 PRK00216 ubiE ubiquinone/menaq 99.7 1.1E-15 2.5E-20 129.0 16.8 151 6-170 8-161 (239)
41 PF13649 Methyltransf_25: Meth 99.7 9.7E-17 2.1E-21 117.4 8.6 94 67-161 1-101 (101)
42 PRK08287 cobalt-precorrin-6Y C 99.7 1.1E-15 2.4E-20 124.4 15.7 113 53-169 21-133 (187)
43 TIGR00740 methyltransferase, p 99.7 4.1E-16 8.9E-21 131.9 13.2 107 62-169 52-163 (239)
44 PF13489 Methyltransf_23: Meth 99.7 2.6E-16 5.7E-21 124.7 11.3 99 61-171 20-119 (161)
45 PRK15001 SAM-dependent 23S rib 99.7 7.8E-16 1.7E-20 136.8 14.5 128 34-167 205-340 (378)
46 PRK00121 trmB tRNA (guanine-N( 99.7 4.5E-16 9.8E-21 128.1 12.0 107 63-169 40-158 (202)
47 smart00138 MeTrc Methyltransfe 99.7 8.8E-16 1.9E-20 131.3 13.0 133 35-167 71-242 (264)
48 PRK05785 hypothetical protein; 99.7 1.9E-15 4E-20 126.5 14.1 89 63-160 51-140 (226)
49 PRK13944 protein-L-isoaspartat 99.7 3.5E-15 7.6E-20 123.2 15.2 112 50-167 59-173 (205)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 3.6E-15 7.8E-20 124.6 15.5 115 53-169 29-145 (223)
51 PRK06922 hypothetical protein; 99.7 6.9E-16 1.5E-20 143.2 11.9 108 60-168 415-538 (677)
52 KOG4300 Predicted methyltransf 99.7 1.1E-15 2.4E-20 121.0 11.2 109 59-168 72-183 (252)
53 TIGR00080 pimt protein-L-isoas 99.7 4.4E-15 9.6E-20 123.6 15.0 113 50-168 64-178 (215)
54 PRK09489 rsmC 16S ribosomal RN 99.6 3.1E-15 6.6E-20 132.1 14.5 111 56-168 189-304 (342)
55 PRK13942 protein-L-isoaspartat 99.6 4.8E-15 1E-19 122.9 14.4 113 49-167 62-176 (212)
56 PRK07580 Mg-protoporphyrin IX 99.6 7.4E-15 1.6E-19 123.5 15.8 151 2-162 4-161 (230)
57 TIGR03533 L3_gln_methyl protei 99.6 6.3E-15 1.4E-19 127.4 15.6 107 62-168 120-252 (284)
58 TIGR00537 hemK_rel_arch HemK-r 99.6 4.1E-15 8.9E-20 120.3 13.5 106 61-170 17-143 (179)
59 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.2E-14 2.5E-19 120.3 16.4 114 55-170 26-155 (213)
60 COG2242 CobL Precorrin-6B meth 99.6 8.1E-15 1.7E-19 115.7 14.5 117 53-173 24-141 (187)
61 TIGR02716 C20_methyl_CrtF C-20 99.6 6E-15 1.3E-19 129.3 15.2 117 52-170 138-257 (306)
62 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.8E-15 4E-20 123.8 11.1 106 63-168 16-133 (194)
63 PLN03075 nicotianamine synthas 99.6 5.7E-15 1.2E-19 126.2 13.7 105 62-167 122-233 (296)
64 TIGR00536 hemK_fam HemK family 99.6 7.6E-15 1.6E-19 127.2 14.5 119 50-168 100-245 (284)
65 PF05401 NodS: Nodulation prot 99.6 2.7E-15 5.8E-20 119.4 10.6 107 58-168 38-147 (201)
66 COG4123 Predicted O-methyltran 99.6 3.1E-15 6.8E-20 124.2 11.5 114 56-169 37-172 (248)
67 COG2813 RsmC 16S RNA G1207 met 99.6 7.6E-15 1.6E-19 124.3 13.8 130 32-168 133-267 (300)
68 PRK11805 N5-glutamine S-adenos 99.6 9.6E-15 2.1E-19 127.4 14.5 105 64-168 134-264 (307)
69 TIGR03587 Pse_Me-ase pseudamin 99.6 1.3E-14 2.7E-19 119.4 14.2 114 46-169 28-144 (204)
70 PRK14966 unknown domain/N5-glu 99.6 7.3E-15 1.6E-19 130.8 13.5 116 49-167 239-381 (423)
71 TIGR03534 RF_mod_PrmC protein- 99.6 1.3E-14 2.8E-19 123.6 14.3 117 50-167 75-217 (251)
72 PRK07402 precorrin-6B methylas 99.6 2.6E-14 5.6E-19 117.3 15.3 113 54-170 31-145 (196)
73 PF13659 Methyltransf_26: Meth 99.6 4.4E-15 9.5E-20 111.5 9.9 104 64-168 1-116 (117)
74 PRK05134 bifunctional 3-demeth 99.6 2.1E-14 4.5E-19 121.1 14.5 117 50-169 35-153 (233)
75 PRK14967 putative methyltransf 99.6 2.2E-14 4.8E-19 120.0 14.3 115 52-168 25-160 (223)
76 PRK00377 cbiT cobalt-precorrin 99.6 3.3E-14 7.2E-19 116.8 15.1 110 56-168 33-146 (198)
77 TIGR02021 BchM-ChlM magnesium 99.6 3.6E-14 7.8E-19 118.5 14.3 115 47-165 37-156 (219)
78 PRK14121 tRNA (guanine-N(7)-)- 99.6 2.6E-14 5.5E-19 126.6 13.8 117 54-170 113-238 (390)
79 PRK09328 N5-glutamine S-adenos 99.6 4.6E-14 1E-18 121.9 15.0 118 50-167 95-238 (275)
80 PRK11088 rrmA 23S rRNA methylt 99.6 1.2E-14 2.5E-19 125.4 11.1 150 9-171 21-185 (272)
81 COG2518 Pcm Protein-L-isoaspar 99.6 4.4E-14 9.5E-19 114.0 13.3 112 49-168 58-170 (209)
82 PRK01544 bifunctional N5-gluta 99.6 3E-14 6.5E-19 132.2 14.0 105 63-167 138-269 (506)
83 PLN02585 magnesium protoporphy 99.6 9.4E-14 2E-18 121.1 15.8 97 63-164 144-247 (315)
84 TIGR01983 UbiG ubiquinone bios 99.6 5.5E-14 1.2E-18 117.8 13.9 105 63-169 45-151 (224)
85 PF07021 MetW: Methionine bios 99.6 6.2E-15 1.3E-19 117.1 7.6 151 61-243 11-165 (193)
86 PRK00312 pcm protein-L-isoaspa 99.6 7.9E-14 1.7E-18 115.8 14.6 110 51-168 66-176 (212)
87 PRK13255 thiopurine S-methyltr 99.6 1.5E-13 3.2E-18 114.1 16.0 112 55-168 29-156 (218)
88 KOG1271 Methyltransferases [Ge 99.6 2.4E-14 5.1E-19 111.3 10.1 126 45-170 45-184 (227)
89 TIGR03704 PrmC_rel_meth putati 99.6 7E-14 1.5E-18 118.7 13.9 117 49-168 71-217 (251)
90 TIGR01177 conserved hypothetic 99.6 8.6E-14 1.9E-18 123.1 15.1 116 53-170 172-297 (329)
91 COG2890 HemK Methylase of poly 99.6 6.5E-14 1.4E-18 120.5 13.8 102 66-168 113-239 (280)
92 PF08003 Methyltransf_9: Prote 99.6 1.1E-13 2.3E-18 117.2 14.0 121 51-172 103-224 (315)
93 PRK04266 fibrillarin; Provisio 99.6 1.5E-13 3.1E-18 114.6 14.7 108 57-168 66-177 (226)
94 PLN02336 phosphoethanolamine N 99.5 4.3E-14 9.3E-19 131.3 12.5 114 52-169 26-144 (475)
95 PRK14968 putative methyltransf 99.5 1.5E-13 3.2E-18 111.9 13.5 106 61-168 21-149 (188)
96 TIGR03438 probable methyltrans 99.5 2.6E-13 5.6E-18 118.5 14.8 149 13-170 21-180 (301)
97 TIGR00406 prmA ribosomal prote 99.5 3.1E-13 6.8E-18 117.2 15.1 102 62-168 158-260 (288)
98 PF01135 PCMT: Protein-L-isoas 99.5 1.4E-13 3.1E-18 113.1 12.2 114 49-168 58-173 (209)
99 PRK06202 hypothetical protein; 99.5 1.6E-13 3.5E-18 115.6 12.6 105 61-170 58-169 (232)
100 COG2264 PrmA Ribosomal protein 99.5 2.6E-13 5.7E-18 115.7 12.9 102 63-168 162-264 (300)
101 COG4976 Predicted methyltransf 99.5 8E-15 1.7E-19 118.0 3.2 141 7-168 83-226 (287)
102 PRK11188 rrmJ 23S rRNA methylt 99.5 2.9E-13 6.3E-18 111.8 12.3 108 52-170 39-168 (209)
103 PRK13943 protein-L-isoaspartat 99.5 6E-13 1.3E-17 116.3 14.8 112 50-167 67-180 (322)
104 PRK00517 prmA ribosomal protei 99.5 3.9E-13 8.4E-18 114.4 13.2 96 62-168 118-214 (250)
105 COG2519 GCD14 tRNA(1-methylade 99.5 7.3E-13 1.6E-17 109.2 13.7 116 52-172 83-200 (256)
106 PF06325 PrmA: Ribosomal prote 99.5 4.7E-13 1E-17 115.2 12.0 112 50-169 149-261 (295)
107 PRK10901 16S rRNA methyltransf 99.5 8.9E-13 1.9E-17 120.6 14.5 116 54-170 235-375 (427)
108 PHA03411 putative methyltransf 99.5 2.1E-12 4.5E-17 109.0 15.0 140 13-168 25-184 (279)
109 PRK13168 rumA 23S rRNA m(5)U19 99.5 5.7E-13 1.2E-17 122.4 12.1 114 48-167 282-400 (443)
110 PRK14902 16S rRNA methyltransf 99.5 1.3E-12 2.7E-17 120.3 14.2 114 56-169 243-381 (444)
111 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.3E-12 2.9E-17 111.9 13.4 113 58-170 66-202 (264)
112 cd02440 AdoMet_MTases S-adenos 99.4 1.1E-12 2.4E-17 95.1 10.7 100 66-166 1-103 (107)
113 PRK14904 16S rRNA methyltransf 99.4 1.9E-12 4.2E-17 119.0 14.7 114 57-170 244-380 (445)
114 PRK14903 16S rRNA methyltransf 99.4 1.5E-12 3.2E-17 118.9 13.7 114 57-170 231-369 (431)
115 PRK14901 16S rRNA methyltransf 99.4 2.1E-12 4.5E-17 118.4 14.4 116 55-170 244-387 (434)
116 PRK04457 spermidine synthase; 99.4 9.6E-13 2.1E-17 112.4 11.0 108 62-169 65-179 (262)
117 PRK10909 rsmD 16S rRNA m(2)G96 99.4 3.7E-12 8.1E-17 104.0 13.7 107 62-170 52-162 (199)
118 smart00650 rADc Ribosomal RNA 99.4 1.7E-12 3.7E-17 103.9 11.4 108 53-167 3-113 (169)
119 PF00891 Methyltransf_2: O-met 99.4 5E-12 1.1E-16 107.1 14.4 109 53-170 90-202 (241)
120 TIGR00563 rsmB ribosomal RNA s 99.4 3.8E-12 8.2E-17 116.4 14.4 117 54-170 229-371 (426)
121 PF05724 TPMT: Thiopurine S-me 99.4 6.3E-12 1.4E-16 104.2 13.6 116 52-169 26-157 (218)
122 PRK13256 thiopurine S-methyltr 99.4 1.6E-11 3.4E-16 101.7 15.6 111 57-169 37-165 (226)
123 PLN02781 Probable caffeoyl-CoA 99.4 3.2E-12 7E-17 107.4 11.7 113 49-167 57-178 (234)
124 TIGR02081 metW methionine bios 99.4 3.1E-12 6.7E-17 104.8 11.0 103 53-168 5-110 (194)
125 PTZ00146 fibrillarin; Provisio 99.4 5.9E-12 1.3E-16 107.4 12.7 106 57-166 126-236 (293)
126 PRK03522 rumB 23S rRNA methylu 99.4 5.3E-12 1.2E-16 111.0 12.5 115 49-168 159-275 (315)
127 PF08704 GCD14: tRNA methyltra 99.4 7.4E-12 1.6E-16 105.0 12.6 116 51-171 28-150 (247)
128 PRK00811 spermidine synthase; 99.4 4.2E-12 9.1E-17 109.8 11.4 108 61-168 74-192 (283)
129 KOG2904 Predicted methyltransf 99.4 1.1E-11 2.4E-16 102.6 12.7 135 33-172 120-290 (328)
130 PF02390 Methyltransf_4: Putat 99.4 8.9E-12 1.9E-16 101.7 11.6 104 65-168 19-134 (195)
131 PF01596 Methyltransf_3: O-met 99.4 1.3E-11 2.8E-16 101.2 12.6 120 43-168 28-156 (205)
132 TIGR00438 rrmJ cell division p 99.4 9.7E-12 2.1E-16 101.3 11.7 99 60-169 29-148 (188)
133 PLN02672 methionine S-methyltr 99.3 1E-11 2.2E-16 122.6 13.5 106 64-169 119-280 (1082)
134 PRK15128 23S rRNA m(5)C1962 me 99.3 8.2E-12 1.8E-16 112.4 11.7 106 63-169 220-341 (396)
135 TIGR02085 meth_trns_rumB 23S r 99.3 1.6E-11 3.4E-16 110.3 13.3 117 46-167 216-334 (374)
136 COG4122 Predicted O-methyltran 99.3 1.3E-11 2.7E-16 101.3 11.2 114 49-168 48-167 (219)
137 KOG1541 Predicted protein carb 99.3 9.6E-12 2.1E-16 99.8 10.0 118 44-168 29-161 (270)
138 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1E-11 2.2E-16 120.0 10.6 105 63-168 538-657 (702)
139 PF06080 DUF938: Protein of un 99.3 2.7E-11 5.8E-16 97.8 11.2 105 64-168 26-142 (204)
140 PHA03412 putative methyltransf 99.3 2.4E-11 5.2E-16 100.3 10.8 95 63-162 49-158 (241)
141 PLN02476 O-methyltransferase 99.3 5.2E-11 1.1E-15 101.5 12.4 115 47-167 105-228 (278)
142 TIGR00479 rumA 23S rRNA (uraci 99.3 6.4E-11 1.4E-15 108.7 14.0 116 47-167 276-396 (431)
143 KOG2361 Predicted methyltransf 99.3 1.2E-11 2.5E-16 100.8 8.0 107 65-172 73-188 (264)
144 TIGR00417 speE spermidine synt 99.3 6.1E-11 1.3E-15 102.0 12.9 107 61-167 70-186 (270)
145 PLN02232 ubiquinone biosynthes 99.3 1.6E-11 3.6E-16 97.2 8.7 81 91-171 1-85 (160)
146 PF10294 Methyltransf_16: Puta 99.3 1E-10 2.2E-15 93.8 12.4 126 44-170 20-159 (173)
147 PLN02366 spermidine synthase 99.3 7.8E-11 1.7E-15 102.5 12.2 107 61-167 89-206 (308)
148 PF03291 Pox_MCEL: mRNA cappin 99.3 3.3E-11 7.2E-16 105.8 9.9 109 63-172 62-191 (331)
149 PF05891 Methyltransf_PK: AdoM 99.2 3.8E-11 8.3E-16 97.4 9.3 119 49-168 35-162 (218)
150 COG0220 Predicted S-adenosylme 99.2 7.7E-11 1.7E-15 97.8 11.2 103 65-167 50-164 (227)
151 PRK01581 speE spermidine synth 99.2 6.3E-11 1.4E-15 103.8 10.1 108 61-168 148-269 (374)
152 COG2263 Predicted RNA methylas 99.2 1.4E-10 3E-15 91.5 11.0 82 58-143 40-121 (198)
153 PF05185 PRMT5: PRMT5 arginine 99.2 1.3E-10 2.9E-15 105.9 12.1 129 36-164 155-294 (448)
154 KOG3010 Methyltransferase [Gen 99.2 2.9E-11 6.3E-16 98.5 6.6 97 66-165 36-135 (261)
155 PF02527 GidB: rRNA small subu 99.2 5.1E-10 1.1E-14 90.1 13.4 113 50-166 34-147 (184)
156 KOG1975 mRNA cap methyltransfe 99.2 1.6E-10 3.5E-15 97.8 10.3 120 51-171 105-241 (389)
157 PLN02589 caffeoyl-CoA O-methyl 99.2 3.8E-10 8.3E-15 95.0 12.4 114 47-166 66-189 (247)
158 PF01170 UPF0020: Putative RNA 99.2 5.4E-10 1.2E-14 90.1 12.7 110 50-159 15-143 (179)
159 COG1092 Predicted SAM-dependen 99.2 1.2E-10 2.7E-15 103.6 9.5 106 63-170 217-339 (393)
160 PF03602 Cons_hypoth95: Conser 99.2 2.7E-10 5.8E-15 91.9 10.5 110 62-172 41-158 (183)
161 PRK03612 spermidine synthase; 99.2 1.3E-10 2.9E-15 108.6 10.0 107 61-168 295-416 (521)
162 TIGR00095 RNA methyltransferas 99.2 5.3E-10 1.2E-14 90.9 12.2 106 63-170 49-162 (189)
163 PRK14896 ksgA 16S ribosomal RN 99.2 3.2E-10 7E-15 96.9 10.9 89 49-142 15-103 (258)
164 KOG1499 Protein arginine N-met 99.1 2.5E-10 5.4E-15 98.4 10.0 103 60-164 57-164 (346)
165 PF01739 CheR: CheR methyltran 99.1 2E-10 4.2E-15 93.5 8.7 126 41-166 9-174 (196)
166 PRK04338 N(2),N(2)-dimethylgua 99.1 4.9E-10 1.1E-14 100.5 11.8 100 64-167 58-158 (382)
167 COG1041 Predicted DNA modifica 99.1 5.7E-10 1.2E-14 96.7 11.7 114 53-168 187-311 (347)
168 PRK11727 23S rRNA mA1618 methy 99.1 1.9E-09 4.2E-14 94.0 15.1 81 63-143 114-202 (321)
169 PTZ00338 dimethyladenosine tra 99.1 4.6E-10 9.9E-15 97.2 11.0 92 49-143 22-114 (294)
170 TIGR02143 trmA_only tRNA (urac 99.1 9.1E-10 2E-14 98.1 12.4 113 48-168 183-312 (353)
171 PRK00274 ksgA 16S ribosomal RN 99.1 4.2E-10 9.2E-15 96.9 9.8 87 50-141 29-116 (272)
172 PRK05031 tRNA (uracil-5-)-meth 99.1 1.8E-09 4E-14 96.6 13.4 114 47-168 191-321 (362)
173 COG2265 TrmA SAM-dependent met 99.1 1.3E-09 2.8E-14 98.9 12.3 120 43-167 273-396 (432)
174 PF02475 Met_10: Met-10+ like- 99.1 5.6E-10 1.2E-14 90.9 8.9 100 61-164 99-199 (200)
175 KOG1500 Protein arginine N-met 99.1 1E-09 2.2E-14 93.5 10.2 103 62-166 176-281 (517)
176 PF10672 Methyltrans_SAM: S-ad 99.1 7.1E-10 1.5E-14 95.0 9.3 106 63-169 123-240 (286)
177 PF05219 DREV: DREV methyltran 99.1 2.4E-09 5.2E-14 89.0 12.1 96 63-169 94-190 (265)
178 COG1352 CheR Methylase of chem 99.1 1.9E-09 4E-14 91.5 11.5 130 35-166 70-240 (268)
179 KOG2899 Predicted methyltransf 99.1 7E-10 1.5E-14 90.5 8.3 104 62-166 57-208 (288)
180 KOG1269 SAM-dependent methyltr 99.0 1.4E-09 3.1E-14 96.2 10.4 158 9-170 59-218 (364)
181 COG0357 GidB Predicted S-adeno 99.0 2.9E-09 6.3E-14 87.2 11.1 98 64-165 68-166 (215)
182 TIGR00755 ksgA dimethyladenosi 99.0 4.7E-09 1E-13 89.5 12.6 99 49-155 15-116 (253)
183 COG3963 Phospholipid N-methylt 99.0 2.9E-09 6.2E-14 82.1 9.9 147 11-171 5-160 (194)
184 KOG3191 Predicted N6-DNA-methy 99.0 7.2E-09 1.6E-13 81.0 12.0 106 64-170 44-171 (209)
185 PRK01544 bifunctional N5-gluta 99.0 3E-09 6.4E-14 99.1 11.8 126 43-168 320-463 (506)
186 PRK04148 hypothetical protein; 99.0 1.2E-08 2.5E-13 77.2 12.7 106 53-172 6-114 (134)
187 PF12147 Methyltransf_20: Puta 99.0 1.6E-08 3.5E-13 85.2 14.7 105 62-166 134-248 (311)
188 PLN02823 spermine synthase 99.0 3.5E-09 7.5E-14 93.2 10.3 107 61-167 101-220 (336)
189 PRK11933 yebU rRNA (cytosine-C 99.0 1.2E-08 2.6E-13 93.6 13.6 111 60-170 110-245 (470)
190 PRK10611 chemotaxis methyltran 99.0 5.4E-09 1.2E-13 89.9 10.3 104 63-166 115-261 (287)
191 COG0742 N6-adenine-specific me 98.9 2.4E-08 5.3E-13 79.6 12.8 117 53-170 31-157 (187)
192 PF02384 N6_Mtase: N-6 DNA Met 98.9 5.3E-09 1.2E-13 92.0 9.7 121 50-170 33-186 (311)
193 KOG3420 Predicted RNA methylas 98.9 2.8E-09 6E-14 80.2 6.5 93 49-143 34-127 (185)
194 KOG1661 Protein-L-isoaspartate 98.9 9.3E-09 2E-13 82.3 9.5 110 51-166 68-192 (237)
195 PF05148 Methyltransf_8: Hypot 98.9 5.2E-09 1.1E-13 84.2 8.2 101 52-171 60-162 (219)
196 TIGR00308 TRM1 tRNA(guanine-26 98.9 1.9E-08 4.2E-13 89.8 12.1 102 64-169 45-149 (374)
197 COG0421 SpeE Spermidine syntha 98.9 1.8E-08 3.9E-13 86.4 11.3 106 62-167 75-190 (282)
198 PF05958 tRNA_U5-meth_tr: tRNA 98.9 2.5E-08 5.5E-13 88.9 12.6 114 45-166 179-309 (352)
199 KOG2940 Predicted methyltransf 98.9 2.6E-09 5.6E-14 86.5 5.3 107 63-172 72-179 (325)
200 PF09445 Methyltransf_15: RNA 98.9 5.8E-09 1.3E-13 81.8 6.6 73 66-140 2-79 (163)
201 COG0030 KsgA Dimethyladenosine 98.9 2.3E-08 5.1E-13 84.0 10.4 89 49-141 16-106 (259)
202 PF01564 Spermine_synth: Sperm 98.9 1.3E-08 2.8E-13 86.2 8.9 110 61-170 74-194 (246)
203 COG0116 Predicted N6-adenine-s 98.8 5.1E-08 1.1E-12 85.8 12.7 120 49-168 177-345 (381)
204 KOG0820 Ribosomal RNA adenine 98.8 2E-08 4.4E-13 83.4 9.5 89 50-141 45-134 (315)
205 COG2520 Predicted methyltransf 98.8 2.1E-08 4.5E-13 87.7 9.9 107 62-173 187-295 (341)
206 KOG2915 tRNA(1-methyladenosine 98.8 6.3E-08 1.4E-12 80.5 11.9 114 52-170 94-213 (314)
207 TIGR00478 tly hemolysin TlyA f 98.8 2E-08 4.2E-13 83.7 8.6 101 50-165 61-169 (228)
208 PRK00050 16S rRNA m(4)C1402 me 98.8 1.8E-08 3.8E-13 86.9 8.6 89 50-140 6-100 (296)
209 PF08123 DOT1: Histone methyla 98.8 5.6E-08 1.2E-12 79.7 10.8 116 49-165 28-156 (205)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.8 9.9E-08 2.2E-12 92.5 13.9 122 49-170 175-350 (702)
211 COG0144 Sun tRNA and rRNA cyto 98.8 2.7E-07 5.8E-12 82.3 14.5 114 57-170 150-291 (355)
212 KOG3045 Predicted RNA methylas 98.7 3.7E-08 7.9E-13 81.3 7.6 98 52-170 168-267 (325)
213 PRK00536 speE spermidine synth 98.7 8.8E-08 1.9E-12 81.2 10.0 101 59-168 68-172 (262)
214 KOG1663 O-methyltransferase [S 98.7 3.8E-07 8.3E-12 74.4 11.9 112 50-167 63-183 (237)
215 COG2521 Predicted archaeal met 98.7 2E-08 4.3E-13 81.7 4.2 108 58-167 129-245 (287)
216 PF04672 Methyltransf_19: S-ad 98.7 3.2E-07 6.9E-12 77.3 11.4 153 19-172 15-195 (267)
217 KOG2187 tRNA uracil-5-methyltr 98.6 9.7E-08 2.1E-12 86.1 7.9 141 20-168 343-491 (534)
218 KOG3178 Hydroxyindole-O-methyl 98.6 3.5E-07 7.6E-12 79.3 10.9 99 64-170 178-278 (342)
219 COG3897 Predicted methyltransf 98.6 2.3E-07 4.9E-12 73.7 8.5 114 55-173 71-185 (218)
220 TIGR03439 methyl_EasF probable 98.6 1.8E-06 3.8E-11 75.6 14.4 146 13-167 34-197 (319)
221 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 1E-06 2.2E-11 76.2 12.2 113 58-170 80-222 (283)
222 PF09243 Rsm22: Mitochondrial 98.6 1.2E-06 2.6E-11 75.5 12.4 120 50-171 20-143 (274)
223 PF03141 Methyltransf_29: Puta 98.6 4.9E-08 1.1E-12 88.1 3.9 115 49-170 99-222 (506)
224 PF01728 FtsJ: FtsJ-like methy 98.5 1.3E-07 2.8E-12 76.5 5.7 108 51-169 8-141 (181)
225 TIGR02987 met_A_Alw26 type II 98.5 1.3E-06 2.8E-11 82.3 12.5 108 63-170 31-199 (524)
226 COG4076 Predicted RNA methylas 98.5 1.6E-07 3.5E-12 73.9 5.2 98 65-165 34-133 (252)
227 PF13679 Methyltransf_32: Meth 98.5 4.9E-06 1.1E-10 64.4 12.2 100 61-166 23-130 (141)
228 PF00398 RrnaAD: Ribosomal RNA 98.5 3E-06 6.6E-11 72.6 12.1 100 49-155 16-119 (262)
229 PF01269 Fibrillarin: Fibrilla 98.4 5.3E-06 1.1E-10 67.8 11.7 108 57-168 67-179 (229)
230 PRK10742 putative methyltransf 98.4 1.9E-06 4E-11 72.0 9.0 89 53-143 76-177 (250)
231 COG0500 SmtA SAM-dependent met 98.4 8.8E-06 1.9E-10 63.3 12.4 104 67-172 52-160 (257)
232 KOG3201 Uncharacterized conser 98.3 2.2E-07 4.8E-12 71.3 2.1 120 49-168 15-141 (201)
233 PF07942 N2227: N2227-like pro 98.3 1E-05 2.2E-10 68.8 12.2 100 62-163 55-198 (270)
234 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1.3E-06 2.9E-11 73.7 6.8 106 62-168 55-200 (256)
235 TIGR01444 fkbM_fam methyltrans 98.3 2.3E-06 5E-11 66.2 7.7 60 66-125 1-60 (143)
236 PF11968 DUF3321: Putative met 98.3 2E-06 4.3E-11 69.9 7.2 90 64-171 52-153 (219)
237 PF03059 NAS: Nicotianamine sy 98.3 1.6E-05 3.4E-10 67.9 12.8 103 64-166 121-229 (276)
238 KOG2730 Methylase [General fun 98.3 7.5E-07 1.6E-11 72.0 4.5 99 63-163 94-198 (263)
239 PF13578 Methyltransf_24: Meth 98.2 9.5E-07 2.1E-11 64.8 2.9 98 68-167 1-105 (106)
240 KOG3987 Uncharacterized conser 98.2 1.3E-06 2.9E-11 69.9 3.8 146 63-243 112-258 (288)
241 PF05971 Methyltransf_10: Prot 98.2 8.6E-06 1.9E-10 70.1 9.0 80 64-144 103-191 (299)
242 PRK11760 putative 23S rRNA C24 98.2 1.5E-05 3.3E-10 69.5 10.4 87 61-160 209-296 (357)
243 COG4262 Predicted spermidine s 98.2 2.3E-05 5.1E-10 68.1 11.1 108 62-170 288-410 (508)
244 KOG1331 Predicted methyltransf 98.2 2.1E-06 4.6E-11 72.2 4.5 99 62-171 44-147 (293)
245 TIGR00006 S-adenosyl-methyltra 98.2 1.4E-05 3E-10 69.3 9.5 90 50-140 7-102 (305)
246 COG1889 NOP1 Fibrillarin-like 98.1 3.1E-05 6.7E-10 62.0 10.4 106 57-167 70-180 (231)
247 PF01861 DUF43: Protein of unk 98.1 0.00016 3.4E-09 60.0 14.8 102 62-166 43-148 (243)
248 KOG1709 Guanidinoacetate methy 98.1 2.9E-05 6.3E-10 62.7 9.4 116 44-165 83-204 (271)
249 KOG1122 tRNA and rRNA cytosine 98.1 6.1E-05 1.3E-09 66.8 11.4 112 59-170 237-374 (460)
250 KOG3115 Methyltransferase-like 98.0 1.8E-05 3.9E-10 63.3 7.1 106 63-168 60-184 (249)
251 COG0293 FtsJ 23S rRNA methylas 98.0 9.2E-05 2E-09 60.1 11.3 108 51-169 32-161 (205)
252 COG0275 Predicted S-adenosylme 98.0 0.00014 3E-09 62.1 12.6 87 50-137 10-103 (314)
253 PF04816 DUF633: Family of unk 98.0 8.3E-05 1.8E-09 61.1 10.3 98 67-166 1-100 (205)
254 PF07091 FmrO: Ribosomal RNA m 97.9 0.00013 2.8E-09 60.9 10.1 82 62-144 104-185 (251)
255 COG1189 Predicted rRNA methyla 97.9 0.00015 3.3E-09 59.8 10.0 105 52-165 67-176 (245)
256 COG4798 Predicted methyltransf 97.8 7.6E-05 1.6E-09 59.4 6.8 115 54-168 39-167 (238)
257 KOG0822 Protein kinase inhibit 97.7 0.00018 4E-09 65.5 8.7 131 35-165 336-476 (649)
258 PF06962 rRNA_methylase: Putat 97.6 0.00041 9E-09 52.9 8.3 80 89-168 1-93 (140)
259 KOG4058 Uncharacterized conser 97.6 0.00055 1.2E-08 52.1 8.5 113 49-166 58-171 (199)
260 KOG2793 Putative N2,N2-dimethy 97.6 0.00075 1.6E-08 56.6 10.1 107 63-171 86-203 (248)
261 COG2384 Predicted SAM-dependen 97.6 0.00055 1.2E-08 55.9 9.0 101 63-165 16-118 (226)
262 COG5459 Predicted rRNA methyla 97.6 0.00037 8E-09 60.5 8.3 112 60-171 110-229 (484)
263 COG0286 HsdM Type I restrictio 97.6 0.0011 2.4E-08 61.9 12.0 152 14-170 142-329 (489)
264 PF04445 SAM_MT: Putative SAM- 97.5 0.00053 1.1E-08 57.1 8.3 89 53-143 63-164 (234)
265 KOG2352 Predicted spermine/spe 97.5 0.00059 1.3E-08 62.0 8.9 102 65-168 50-162 (482)
266 PF01795 Methyltransf_5: MraW 97.5 0.00015 3.2E-09 62.9 4.7 89 50-139 7-102 (310)
267 PF11599 AviRa: RRNA methyltra 97.5 0.0025 5.5E-08 51.8 11.2 114 53-166 41-213 (246)
268 KOG4589 Cell division protein 97.4 0.0016 3.4E-08 51.8 9.1 99 61-170 67-187 (232)
269 PF04989 CmcI: Cephalosporin h 97.3 0.00049 1.1E-08 56.1 6.0 103 63-168 32-148 (206)
270 KOG1596 Fibrillarin and relate 97.3 0.0011 2.3E-08 54.8 7.1 108 57-169 150-263 (317)
271 KOG2798 Putative trehalase [Ca 97.2 0.0024 5.2E-08 54.8 9.2 101 63-165 150-294 (369)
272 PF03492 Methyltransf_7: SAM d 97.2 0.074 1.6E-06 47.2 19.1 120 53-172 6-188 (334)
273 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0021 4.6E-08 57.8 9.1 103 63-169 49-156 (377)
274 COG1867 TRM1 N2,N2-dimethylgua 97.2 0.0024 5.1E-08 56.2 8.7 103 64-170 53-157 (380)
275 KOG1562 Spermidine synthase [A 97.2 0.0006 1.3E-08 58.0 4.7 108 60-167 118-236 (337)
276 COG1064 AdhP Zn-dependent alco 97.1 0.0044 9.5E-08 54.5 10.0 98 57-168 160-260 (339)
277 PHA01634 hypothetical protein 97.1 0.0042 9.1E-08 46.2 7.8 69 63-136 28-98 (156)
278 KOG2198 tRNA cytosine-5-methyl 97.0 0.0096 2.1E-07 52.4 10.9 114 58-171 150-300 (375)
279 KOG0024 Sorbitol dehydrogenase 97.0 0.0045 9.7E-08 53.5 8.3 109 56-174 162-280 (354)
280 PLN02668 indole-3-acetate carb 96.9 0.022 4.7E-07 51.2 12.8 109 64-172 64-242 (386)
281 PRK09424 pntA NAD(P) transhydr 96.8 0.013 2.8E-07 54.8 11.0 100 61-168 162-286 (509)
282 PTZ00357 methyltransferase; Pr 96.8 0.0086 1.9E-07 56.7 9.6 128 35-162 643-830 (1072)
283 COG4627 Uncharacterized protei 96.8 0.00043 9.4E-09 53.1 1.0 48 126-173 42-92 (185)
284 KOG2671 Putative RNA methylase 96.8 0.003 6.4E-08 54.9 5.8 108 59-168 204-355 (421)
285 KOG1501 Arginine N-methyltrans 96.7 0.0036 7.7E-08 56.1 5.8 71 65-136 68-141 (636)
286 COG3129 Predicted SAM-dependen 96.7 0.014 3E-07 48.1 8.6 80 63-143 78-166 (292)
287 PRK11524 putative methyltransf 96.6 0.0088 1.9E-07 51.9 7.8 58 49-109 195-252 (284)
288 PF03141 Methyltransf_29: Puta 96.5 0.0055 1.2E-07 56.1 5.7 98 63-167 365-467 (506)
289 PF01555 N6_N4_Mtase: DNA meth 96.4 0.0097 2.1E-07 49.4 6.7 54 49-105 178-231 (231)
290 KOG2920 Predicted methyltransf 96.4 0.004 8.8E-08 52.9 4.2 117 48-165 98-232 (282)
291 KOG2078 tRNA modification enzy 96.3 0.0028 6E-08 56.6 2.8 63 61-125 247-311 (495)
292 PRK13699 putative methylase; P 96.3 0.02 4.4E-07 47.9 7.8 59 49-110 150-208 (227)
293 PF02636 Methyltransf_28: Puta 96.2 0.021 4.5E-07 48.7 7.7 87 54-144 8-109 (252)
294 cd08283 FDH_like_1 Glutathione 96.2 0.034 7.3E-07 50.4 9.5 107 57-167 178-306 (386)
295 COG1063 Tdh Threonine dehydrog 96.2 0.077 1.7E-06 47.5 11.6 100 61-169 166-271 (350)
296 PF06859 Bin3: Bicoid-interact 96.1 0.0041 8.9E-08 45.1 2.1 37 130-166 1-43 (110)
297 COG4301 Uncharacterized conser 96.0 0.29 6.3E-06 41.0 12.9 107 62-168 77-194 (321)
298 KOG1227 Putative methyltransfe 96.0 0.0036 7.9E-08 53.4 1.8 99 63-166 194-296 (351)
299 COG1568 Predicted methyltransf 96.0 0.049 1.1E-06 46.2 8.4 102 63-166 152-259 (354)
300 COG1565 Uncharacterized conser 95.9 0.054 1.2E-06 47.8 8.6 59 52-110 66-132 (370)
301 PRK09880 L-idonate 5-dehydroge 95.8 0.1 2.2E-06 46.4 10.6 100 57-167 163-266 (343)
302 TIGR00561 pntA NAD(P) transhyd 95.8 0.056 1.2E-06 50.5 8.9 96 62-165 162-282 (511)
303 cd00315 Cyt_C5_DNA_methylase C 95.8 0.022 4.7E-07 49.2 5.9 69 66-142 2-74 (275)
304 KOG1253 tRNA methyltransferase 95.7 0.0085 1.8E-07 54.6 3.1 104 62-169 108-218 (525)
305 PF07279 DUF1442: Protein of u 95.6 0.29 6.3E-06 40.1 11.2 100 63-167 41-148 (218)
306 cd08230 glucose_DH Glucose deh 95.6 0.15 3.3E-06 45.6 10.7 96 61-167 170-269 (355)
307 cd08254 hydroxyacyl_CoA_DH 6-h 95.6 0.23 5E-06 43.7 11.7 95 59-167 161-263 (338)
308 KOG3924 Putative protein methy 95.5 0.08 1.7E-06 47.1 8.3 124 42-166 171-307 (419)
309 TIGR00027 mthyl_TIGR00027 meth 95.3 0.44 9.6E-06 40.7 12.0 119 50-170 68-200 (260)
310 PF07757 AdoMet_MTase: Predict 95.3 0.014 3.1E-07 42.1 2.4 33 63-97 58-90 (112)
311 TIGR02822 adh_fam_2 zinc-bindi 95.2 0.4 8.7E-06 42.4 12.0 95 57-167 159-254 (329)
312 PF03269 DUF268: Caenorhabditi 95.2 0.016 3.5E-07 45.0 2.6 100 64-171 2-115 (177)
313 PF11312 DUF3115: Protein of u 95.1 0.052 1.1E-06 47.0 5.9 105 64-168 87-243 (315)
314 COG3510 CmcI Cephalosporin hyd 95.1 0.13 2.8E-06 41.3 7.4 107 63-174 69-187 (237)
315 PF05711 TylF: Macrocin-O-meth 95.0 0.099 2.1E-06 44.2 7.2 121 48-170 58-215 (248)
316 KOG1099 SAM-dependent methyltr 94.9 0.064 1.4E-06 44.3 5.3 95 64-169 42-165 (294)
317 PF11899 DUF3419: Protein of u 94.7 0.17 3.7E-06 45.7 8.2 77 15-107 1-77 (380)
318 COG0686 Ald Alanine dehydrogen 94.7 0.12 2.5E-06 44.8 6.6 97 64-165 168-266 (371)
319 KOG2651 rRNA adenine N-6-methy 94.6 0.16 3.5E-06 45.1 7.4 59 46-105 135-194 (476)
320 TIGR03366 HpnZ_proposed putati 94.5 0.17 3.6E-06 43.7 7.5 99 57-167 114-218 (280)
321 cd08237 ribitol-5-phosphate_DH 94.5 0.38 8.2E-06 42.8 10.0 95 60-167 160-256 (341)
322 KOG2352 Predicted spermine/spe 94.4 0.048 1E-06 49.9 4.1 109 63-171 295-420 (482)
323 KOG2912 Predicted DNA methylas 94.3 0.12 2.6E-06 44.8 5.8 93 49-141 86-189 (419)
324 PF10354 DUF2431: Domain of un 94.1 0.35 7.6E-06 38.4 8.0 101 69-169 2-127 (166)
325 PF05206 TRM13: Methyltransfer 94.1 0.22 4.7E-06 42.5 7.2 117 52-171 7-144 (259)
326 TIGR00497 hsdM type I restrict 94.1 0.84 1.8E-05 43.0 11.8 106 63-168 217-356 (501)
327 PF00145 DNA_methylase: C-5 cy 94.0 0.28 6.1E-06 43.1 8.1 69 66-143 2-74 (335)
328 cd08239 THR_DH_like L-threonin 93.8 0.22 4.8E-06 44.1 7.2 100 57-167 157-262 (339)
329 cd08281 liver_ADH_like1 Zinc-d 93.7 0.24 5.2E-06 44.6 7.2 100 57-167 185-290 (371)
330 cd00401 AdoHcyase S-adenosyl-L 93.5 0.89 1.9E-05 41.6 10.5 98 52-167 189-289 (413)
331 TIGR03451 mycoS_dep_FDH mycoth 93.5 0.85 1.8E-05 40.8 10.4 99 58-167 171-276 (358)
332 PF00107 ADH_zinc_N: Zinc-bind 93.4 0.42 9.1E-06 35.7 7.1 84 73-169 1-91 (130)
333 cd05188 MDR Medium chain reduc 93.4 0.42 9.2E-06 40.3 7.9 95 62-167 133-232 (271)
334 PF12692 Methyltransf_17: S-ad 93.4 0.37 8E-06 37.0 6.5 112 47-166 13-133 (160)
335 PRK01747 mnmC bifunctional tRN 93.4 0.31 6.8E-06 47.6 7.8 105 62-166 56-205 (662)
336 COG2933 Predicted SAM-dependen 93.3 0.47 1E-05 40.2 7.5 85 60-157 208-293 (358)
337 PRK11524 putative methyltransf 93.1 0.084 1.8E-06 45.8 3.1 54 114-167 8-80 (284)
338 KOG0821 Predicted ribosomal RN 92.9 0.26 5.7E-06 40.5 5.4 75 50-126 37-111 (326)
339 cd08232 idonate-5-DH L-idonate 92.8 1.2 2.6E-05 39.3 10.2 95 59-166 161-261 (339)
340 KOG2539 Mitochondrial/chloropl 92.8 0.28 6E-06 44.8 5.9 108 63-170 200-318 (491)
341 PF10237 N6-adenineMlase: Prob 92.8 2.8 6E-05 33.1 10.9 95 63-168 25-124 (162)
342 TIGR01202 bchC 2-desacetyl-2-h 92.5 0.82 1.8E-05 40.0 8.5 88 62-168 143-232 (308)
343 PRK05786 fabG 3-ketoacyl-(acyl 92.3 2.9 6.4E-05 34.6 11.5 103 63-168 4-136 (238)
344 TIGR00675 dcm DNA-methyltransf 92.2 0.26 5.6E-06 43.5 5.1 67 67-141 1-70 (315)
345 PLN03154 putative allyl alcoho 92.1 0.86 1.9E-05 40.7 8.3 99 57-166 152-257 (348)
346 PF02254 TrkA_N: TrkA-N domain 92.0 0.94 2E-05 33.1 7.3 87 72-168 4-97 (116)
347 PRK10309 galactitol-1-phosphat 92.0 0.6 1.3E-05 41.5 7.3 100 57-167 154-260 (347)
348 cd08245 CAD Cinnamyl alcohol d 91.9 2.6 5.6E-05 36.9 11.2 96 59-167 158-256 (330)
349 PLN02740 Alcohol dehydrogenase 91.8 2 4.3E-05 38.8 10.5 97 57-166 192-299 (381)
350 cd08255 2-desacetyl-2-hydroxye 91.8 2.5 5.4E-05 36.0 10.7 95 58-166 92-189 (277)
351 TIGR03201 dearomat_had 6-hydro 91.8 2.7 5.8E-05 37.4 11.2 99 58-167 161-272 (349)
352 TIGR02825 B4_12hDH leukotriene 91.7 2 4.4E-05 37.7 10.2 97 57-166 132-236 (325)
353 COG0604 Qor NADPH:quinone redu 91.6 0.68 1.5E-05 41.0 7.0 101 56-168 135-242 (326)
354 TIGR00853 pts-lac PTS system, 91.5 1.3 2.8E-05 31.6 7.1 74 65-164 4-78 (95)
355 TIGR00518 alaDH alanine dehydr 91.4 0.65 1.4E-05 42.0 6.8 99 63-166 166-266 (370)
356 cd08234 threonine_DH_like L-th 91.4 4 8.7E-05 35.7 11.8 98 57-167 153-257 (334)
357 COG5379 BtaA S-adenosylmethion 91.2 1.4 3.1E-05 37.9 8.1 74 19-108 33-106 (414)
358 cd08242 MDR_like Medium chain 91.2 3.6 7.9E-05 35.8 11.3 94 57-165 149-243 (319)
359 PF03686 UPF0146: Uncharacteri 91.1 2.4 5.2E-05 31.8 8.3 91 64-172 14-107 (127)
360 KOG1201 Hydroxysteroid 17-beta 91.0 2.1 4.6E-05 37.0 9.0 75 63-141 37-125 (300)
361 KOG2782 Putative SAM dependent 90.9 0.18 3.9E-06 41.3 2.4 58 50-107 30-87 (303)
362 COG0287 TyrA Prephenate dehydr 90.9 1.3 2.8E-05 38.3 7.8 89 65-163 4-94 (279)
363 cd08294 leukotriene_B4_DH_like 90.7 2 4.3E-05 37.6 9.2 96 57-166 137-240 (329)
364 PLN02586 probable cinnamyl alc 90.6 2.8 6E-05 37.6 10.1 96 61-167 181-278 (360)
365 COG0270 Dcm Site-specific DNA 90.5 0.84 1.8E-05 40.5 6.6 73 64-143 3-80 (328)
366 COG1748 LYS9 Saccharopine dehy 90.1 1.9 4.1E-05 39.0 8.4 72 65-140 2-78 (389)
367 cd05564 PTS_IIB_chitobiose_lic 90.0 1.4 3E-05 31.4 6.2 68 70-162 4-72 (96)
368 COG1255 Uncharacterized protei 90.0 3 6.6E-05 30.6 7.7 87 65-169 15-104 (129)
369 cd08261 Zn_ADH7 Alcohol dehydr 89.9 1.2 2.5E-05 39.3 7.0 99 57-166 153-257 (337)
370 cd05285 sorbitol_DH Sorbitol d 89.8 1.5 3.2E-05 38.9 7.7 100 57-167 156-265 (343)
371 PRK10458 DNA cytosine methylas 89.8 1.5 3.2E-05 40.8 7.7 74 64-141 88-180 (467)
372 PLN02827 Alcohol dehydrogenase 89.7 3 6.6E-05 37.6 9.7 97 58-166 188-294 (378)
373 TIGR00936 ahcY adenosylhomocys 89.7 3.4 7.4E-05 37.7 9.8 88 62-167 193-282 (406)
374 PF05050 Methyltransf_21: Meth 89.6 1.1 2.5E-05 34.8 6.1 54 69-122 1-61 (167)
375 cd05565 PTS_IIB_lactose PTS_II 89.5 1.4 3.1E-05 31.6 5.8 75 66-166 2-77 (99)
376 PRK13699 putative methylase; P 89.3 0.38 8.3E-06 40.2 3.3 51 116-166 3-71 (227)
377 PF11899 DUF3419: Protein of u 89.2 0.81 1.7E-05 41.4 5.4 61 110-170 272-337 (380)
378 cd08300 alcohol_DH_class_III c 89.2 3.9 8.4E-05 36.7 9.9 99 57-167 180-288 (368)
379 cd08295 double_bond_reductase_ 89.1 2.4 5.2E-05 37.4 8.4 99 57-166 145-250 (338)
380 cd08231 MDR_TM0436_like Hypoth 89.1 5.2 0.00011 35.6 10.6 95 62-167 176-280 (361)
381 KOG2360 Proliferation-associat 88.9 1.4 3.1E-05 39.3 6.5 83 58-140 208-294 (413)
382 PF01262 AlaDh_PNT_C: Alanine 88.8 0.5 1.1E-05 37.5 3.4 97 63-164 19-136 (168)
383 KOG0023 Alcohol dehydrogenase, 88.7 2 4.3E-05 37.6 7.1 101 58-168 176-280 (360)
384 cd08238 sorbose_phosphate_red 88.6 3 6.5E-05 38.1 8.9 101 59-166 171-287 (410)
385 COG3315 O-Methyltransferase in 88.6 3.4 7.4E-05 36.1 8.7 117 50-168 79-210 (297)
386 cd08277 liver_alcohol_DH_like 88.6 6.8 0.00015 35.1 11.1 100 57-167 178-286 (365)
387 PRK05708 2-dehydropantoate 2-r 88.2 2.8 6E-05 36.7 8.1 95 65-167 3-104 (305)
388 COG0863 DNA modification methy 88.1 2.5 5.5E-05 36.6 7.8 59 49-110 209-267 (302)
389 PF04072 LCM: Leucine carboxyl 88.0 2.9 6.3E-05 33.6 7.5 88 64-152 79-181 (183)
390 PRK08306 dipicolinate synthase 88.0 11 0.00023 33.0 11.5 86 63-164 151-238 (296)
391 TIGR02819 fdhA_non_GSH formald 87.9 6.4 0.00014 35.8 10.5 104 58-168 180-300 (393)
392 cd08298 CAD2 Cinnamyl alcohol 87.9 13 0.00028 32.5 12.2 95 57-167 161-256 (329)
393 PRK12939 short chain dehydroge 87.8 7.8 0.00017 32.2 10.4 75 63-139 6-93 (250)
394 PRK07819 3-hydroxybutyryl-CoA 87.8 4.1 8.9E-05 35.4 8.8 98 65-169 6-123 (286)
395 PRK07066 3-hydroxybutyryl-CoA 87.7 3.6 7.8E-05 36.4 8.4 98 64-167 7-119 (321)
396 cd08236 sugar_DH NAD(P)-depend 87.6 2.3 5E-05 37.5 7.3 96 58-166 154-257 (343)
397 PF02737 3HCDH_N: 3-hydroxyacy 87.5 6.8 0.00015 31.4 9.4 97 66-169 1-116 (180)
398 PLN02178 cinnamyl-alcohol dehy 87.5 4.1 8.9E-05 36.8 9.0 93 62-166 177-272 (375)
399 PRK09260 3-hydroxybutyryl-CoA 87.5 3.1 6.6E-05 36.1 7.8 98 66-169 3-119 (288)
400 PRK07109 short chain dehydroge 87.4 9.7 0.00021 33.7 11.2 76 63-140 7-95 (334)
401 PLN02494 adenosylhomocysteinas 87.3 3.2 6.9E-05 38.6 8.0 99 52-167 241-341 (477)
402 PF03514 GRAS: GRAS domain fam 87.2 14 0.0003 33.5 12.0 108 57-166 104-243 (374)
403 cd08293 PTGR2 Prostaglandin re 87.1 2.7 5.8E-05 37.2 7.5 95 59-166 148-253 (345)
404 PRK07806 short chain dehydroge 87.1 13 0.00028 30.9 11.3 102 63-166 5-133 (248)
405 PLN03209 translocon at the inn 87.1 8.3 0.00018 36.9 10.8 81 58-139 74-168 (576)
406 cd05278 FDH_like Formaldehyde 87.0 1.9 4.1E-05 38.1 6.4 97 59-166 163-266 (347)
407 PRK05476 S-adenosyl-L-homocyst 86.9 5.2 0.00011 36.8 9.2 86 63-166 211-298 (425)
408 PLN02514 cinnamyl-alcohol dehy 86.7 13 0.00028 33.2 11.7 95 62-167 179-275 (357)
409 cd08296 CAD_like Cinnamyl alco 86.5 6.1 0.00013 34.8 9.4 97 58-167 158-259 (333)
410 PRK08213 gluconate 5-dehydroge 86.5 5.3 0.00011 33.6 8.7 76 63-140 11-99 (259)
411 PRK06701 short chain dehydroge 86.3 12 0.00025 32.4 10.9 75 63-139 45-133 (290)
412 cd08233 butanediol_DH_like (2R 86.3 2.8 6.1E-05 37.2 7.2 100 57-167 166-272 (351)
413 PF06460 NSP13: Coronavirus NS 86.3 6.9 0.00015 33.2 8.7 98 59-168 57-170 (299)
414 COG4017 Uncharacterized protei 86.3 3.8 8.2E-05 33.1 6.9 98 53-170 34-132 (254)
415 PRK05808 3-hydroxybutyryl-CoA 86.3 6.8 0.00015 33.8 9.3 96 65-167 4-118 (282)
416 PRK08293 3-hydroxybutyryl-CoA 86.2 7.5 0.00016 33.6 9.6 95 65-165 4-118 (287)
417 cd08285 NADP_ADH NADP(H)-depen 86.1 7.8 0.00017 34.3 10.0 99 57-166 160-265 (351)
418 COG2961 ComJ Protein involved 85.6 5.6 0.00012 33.5 7.9 98 68-169 93-197 (279)
419 cd05213 NAD_bind_Glutamyl_tRNA 85.5 13 0.00027 32.7 10.7 98 62-170 176-275 (311)
420 PF02153 PDH: Prephenate dehyd 85.4 3.2 6.8E-05 35.4 6.7 75 77-163 1-75 (258)
421 PRK07774 short chain dehydroge 85.4 14 0.00031 30.6 10.8 76 63-140 5-93 (250)
422 PRK06035 3-hydroxyacyl-CoA deh 85.1 7 0.00015 33.9 8.9 93 65-164 4-118 (291)
423 cd08265 Zn_ADH3 Alcohol dehydr 84.7 13 0.00028 33.5 10.8 97 59-166 199-306 (384)
424 PRK08324 short chain dehydroge 84.6 7.8 0.00017 38.1 9.8 102 63-167 421-557 (681)
425 PRK08594 enoyl-(acyl carrier p 84.4 16 0.00034 30.9 10.6 77 63-139 6-96 (257)
426 PRK08265 short chain dehydroge 84.2 15 0.00032 31.0 10.4 72 63-139 5-89 (261)
427 PRK08703 short chain dehydroge 84.0 8.4 0.00018 31.9 8.7 76 63-139 5-96 (239)
428 PRK06940 short chain dehydroge 83.9 20 0.00043 30.6 11.1 97 66-165 4-123 (275)
429 cd05283 CAD1 Cinnamyl alcohol 83.6 12 0.00027 32.9 10.0 98 57-167 163-263 (337)
430 PRK08217 fabG 3-ketoacyl-(acyl 83.6 8.1 0.00018 32.1 8.5 75 63-139 4-91 (253)
431 PRK08945 putative oxoacyl-(acy 83.6 6.6 0.00014 32.8 7.9 77 62-139 10-101 (247)
432 PF02086 MethyltransfD12: D12 83.5 2.2 4.7E-05 36.1 5.0 57 51-109 8-64 (260)
433 cd08278 benzyl_alcohol_DH Benz 83.5 3.6 7.7E-05 36.9 6.5 95 58-166 181-284 (365)
434 PRK03659 glutathione-regulated 83.2 4.9 0.00011 38.9 7.6 93 65-169 401-500 (601)
435 PRK06181 short chain dehydroge 83.1 15 0.00032 30.9 9.9 73 65-139 2-87 (263)
436 PF01210 NAD_Gly3P_dh_N: NAD-d 83.0 6.7 0.00015 30.6 7.2 92 66-165 1-101 (157)
437 PRK07417 arogenate dehydrogena 82.7 6.3 0.00014 34.0 7.5 84 66-163 2-87 (279)
438 cd08286 FDH_like_ADH2 formalde 82.6 18 0.00038 31.9 10.6 98 58-166 161-265 (345)
439 PRK11064 wecC UDP-N-acetyl-D-m 82.5 19 0.00042 33.1 10.9 92 65-167 4-119 (415)
440 PLN02989 cinnamyl-alcohol dehy 82.1 20 0.00044 31.3 10.7 77 63-140 4-87 (325)
441 PRK06522 2-dehydropantoate 2-r 81.7 11 0.00024 32.7 8.8 92 65-166 1-99 (304)
442 COG1062 AdhC Zn-dependent alco 81.7 5.5 0.00012 35.3 6.6 104 54-169 176-287 (366)
443 PRK09590 celB cellobiose phosp 81.6 7.2 0.00016 28.2 6.3 74 66-165 3-79 (104)
444 PRK07530 3-hydroxybutyryl-CoA 81.5 25 0.00054 30.4 10.9 97 65-168 5-120 (292)
445 PRK06128 oxidoreductase; Provi 81.4 31 0.00068 29.8 11.5 102 63-166 54-190 (300)
446 PRK07454 short chain dehydroge 81.3 13 0.00027 30.9 8.7 76 63-140 5-93 (241)
447 cd08279 Zn_ADH_class_III Class 81.3 5.8 0.00013 35.4 7.1 97 58-167 177-282 (363)
448 PF02558 ApbA: Ketopantoate re 81.3 20 0.00043 27.4 9.2 87 67-166 1-100 (151)
449 PF02826 2-Hacid_dh_C: D-isome 80.9 2 4.3E-05 34.4 3.5 88 63-164 35-124 (178)
450 cd08260 Zn_ADH6 Alcohol dehydr 80.8 16 0.00034 32.2 9.6 98 58-166 160-263 (345)
451 PLN02545 3-hydroxybutyryl-CoA 80.6 18 0.00039 31.4 9.7 94 65-165 5-117 (295)
452 KOG2811 Uncharacterized conser 80.4 6.9 0.00015 34.9 6.7 62 64-126 183-247 (420)
453 PRK07984 enoyl-(acyl carrier p 80.4 30 0.00065 29.3 10.8 74 63-140 5-94 (262)
454 cd05281 TDH Threonine dehydrog 80.3 7.9 0.00017 34.1 7.5 95 61-166 161-261 (341)
455 TIGR02818 adh_III_F_hyde S-(hy 80.3 7.8 0.00017 34.8 7.5 99 57-167 179-287 (368)
456 PRK15057 UDP-glucose 6-dehydro 80.2 29 0.00062 31.6 11.1 38 66-105 2-40 (388)
457 PRK07523 gluconate 5-dehydroge 79.7 12 0.00026 31.3 8.2 76 63-140 9-97 (255)
458 PRK10083 putative oxidoreducta 79.5 19 0.0004 31.6 9.6 99 57-166 154-258 (339)
459 PRK15001 SAM-dependent 23S rib 79.4 22 0.00047 32.3 9.9 113 45-168 29-143 (378)
460 PRK09291 short chain dehydroge 79.3 13 0.00027 31.2 8.1 73 65-139 3-82 (257)
461 PTZ00075 Adenosylhomocysteinas 79.1 5.2 0.00011 37.2 5.9 88 62-167 252-341 (476)
462 cd05284 arabinose_DH_like D-ar 79.0 16 0.00036 32.0 9.1 96 61-166 165-265 (340)
463 PRK10310 PTS system galactitol 79.0 5.7 0.00012 28.1 4.9 54 66-138 4-58 (94)
464 PRK06124 gluconate 5-dehydroge 78.9 14 0.00031 30.9 8.4 75 63-139 10-97 (256)
465 PRK03562 glutathione-regulated 78.8 14 0.0003 36.0 9.1 92 65-167 401-498 (621)
466 PRK07502 cyclohexadienyl dehyd 78.6 16 0.00034 31.9 8.7 90 64-164 6-97 (307)
467 cd08297 CAD3 Cinnamyl alcohol 78.6 26 0.00057 30.7 10.3 98 59-167 161-265 (341)
468 TIGR02356 adenyl_thiF thiazole 78.6 10 0.00022 31.0 7.1 33 63-96 20-54 (202)
469 cd05279 Zn_ADH1 Liver alcohol 78.4 13 0.00028 33.3 8.3 99 57-167 177-285 (365)
470 PRK08339 short chain dehydroge 78.3 15 0.00033 31.0 8.4 75 63-139 7-94 (263)
471 PRK07890 short chain dehydroge 78.2 16 0.00034 30.5 8.5 76 63-140 4-92 (258)
472 TIGR00692 tdh L-threonine 3-de 78.1 36 0.00079 29.9 11.1 96 61-167 159-261 (340)
473 PRK06949 short chain dehydroge 78.1 15 0.00033 30.6 8.4 75 63-139 8-95 (258)
474 PRK07102 short chain dehydroge 77.8 14 0.0003 30.7 7.9 73 65-138 2-84 (243)
475 PF04378 RsmJ: Ribosomal RNA s 77.8 4.5 9.7E-05 34.2 4.7 97 68-168 62-165 (245)
476 PRK07904 short chain dehydroge 77.6 14 0.0003 31.2 7.9 76 62-138 6-95 (253)
477 PRK05867 short chain dehydroge 77.5 15 0.00032 30.7 8.1 75 63-140 8-96 (253)
478 PRK10669 putative cation:proto 77.5 10 0.00022 36.3 7.7 90 65-166 418-514 (558)
479 PRK05565 fabG 3-ketoacyl-(acyl 77.4 33 0.00072 28.2 10.2 75 64-140 5-93 (247)
480 PRK09422 ethanol-active dehydr 77.4 24 0.00053 30.8 9.7 99 57-167 156-261 (338)
481 PRK07326 short chain dehydroge 77.3 14 0.0003 30.4 7.8 74 63-139 5-91 (237)
482 PLN02702 L-idonate 5-dehydroge 77.3 42 0.00092 29.8 11.3 100 57-167 175-285 (364)
483 PRK07814 short chain dehydroge 77.3 16 0.00036 30.7 8.3 75 63-139 9-96 (263)
484 PRK07985 oxidoreductase; Provi 77.2 43 0.00094 28.9 11.0 102 63-166 48-184 (294)
485 PRK06172 short chain dehydroge 77.2 17 0.00036 30.3 8.3 76 63-140 6-94 (253)
486 cd08235 iditol_2_DH_like L-idi 77.1 9.2 0.0002 33.6 7.0 97 57-166 159-264 (343)
487 PRK06249 2-dehydropantoate 2-r 77.0 19 0.00041 31.6 8.8 91 64-166 5-105 (313)
488 TIGR02437 FadB fatty oxidation 77.0 23 0.00049 35.1 10.1 98 65-169 314-430 (714)
489 cd08240 6_hydroxyhexanoate_dh_ 77.0 52 0.0011 29.0 11.9 92 62-166 174-273 (350)
490 PRK05396 tdh L-threonine 3-deh 76.9 22 0.00047 31.3 9.3 96 62-168 162-264 (341)
491 PRK06079 enoyl-(acyl carrier p 76.8 43 0.00094 28.0 11.0 74 63-140 6-93 (252)
492 cd08284 FDH_like_2 Glutathione 76.7 51 0.0011 28.8 11.8 94 59-166 163-265 (344)
493 TIGR02354 thiF_fam2 thiamine b 76.7 40 0.00086 27.5 10.0 92 64-159 21-137 (200)
494 cd08266 Zn_ADH_like1 Alcohol d 76.6 9.6 0.00021 33.1 6.9 97 58-167 161-265 (342)
495 PRK07666 fabG 3-ketoacyl-(acyl 76.6 19 0.0004 29.8 8.4 75 64-140 7-94 (239)
496 cd08243 quinone_oxidoreductase 76.5 29 0.00063 29.8 9.9 96 59-166 138-237 (320)
497 PRK06194 hypothetical protein; 76.4 16 0.00034 31.3 8.0 75 64-140 6-93 (287)
498 PRK12921 2-dehydropantoate 2-r 76.4 27 0.00057 30.3 9.5 91 65-166 1-101 (305)
499 PRK11730 fadB multifunctional 76.3 26 0.00057 34.7 10.3 98 65-169 314-430 (715)
500 cd08269 Zn_ADH9 Alcohol dehydr 76.2 35 0.00076 29.3 10.3 97 58-167 124-229 (312)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-47 Score=320.45 Aligned_cols=268 Identities=32% Similarity=0.597 Sum_probs=239.8
Q ss_pred ccccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHH
Q 022810 3 IAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIA 82 (291)
Q Consensus 3 ~~~~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~ 82 (291)
........+++|||++++||+.|+++++.|||++|+.+..+++++|..+++.+++++.++||++|||||||+|.++++++
T Consensus 12 ~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 12 SKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred cccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 34567789999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhcccc
Q 022810 83 QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKE 159 (291)
Q Consensus 83 ~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~p 159 (291)
+++ +++|+|+++|+++.+.+++++++.|+. ++++...|..++. ++||.|+|..+++|+ .+.+.+++.+.++|+|
T Consensus 92 ~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 92 EEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred HHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 998 899999999999999999999999995 8999999999976 459999999999999 4599999999999999
Q ss_pred CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022810 160 DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 160 gG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~ 238 (291)
||.+++.++.....++. ....|+.+|+||+|.+|+...+.. ..+..-.+..|...+.||.+|++.|.++|.++..
T Consensus 169 ~G~~llh~I~~~~~~~~----~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~ 244 (283)
T COG2230 169 GGRMLLHSITGPDQEFR----RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRD 244 (283)
T ss_pred CceEEEEEecCCCcccc----cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHH
Confidence 99999998887665542 468899999999999998887776 3444444556778899999999999999999999
Q ss_pred hHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022810 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
++... ++ .++++.|+.|+.+|+.+|+.|.++ +.|+++.|
T Consensus 245 ~a~~~----~~----e~~~r~w~~yl~~~~~~Fr~~~~~---~~q~~~~k 283 (283)
T COG2230 245 EAIAL----YD----ERFYRMWELYLAACAAAFRAGYID---VFQFTLTK 283 (283)
T ss_pred HHHHH----hh----HHHHHHHHHHHHHHHHHhccCCce---EEEEEeeC
Confidence 88765 34 367999999999999999999865 88887754
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=8.5e-48 Score=328.18 Aligned_cols=265 Identities=36% Similarity=0.680 Sum_probs=206.8
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022810 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 84 (291)
.++++++++|||++++||..++|++|+|||++|+.+..+++++|.++++.+++++++++|.+|||||||+|.++..++++
T Consensus 4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 4 KQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp ---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred chHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022810 85 YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG 161 (291)
+ +++|+|+++|+++.+.+++++++.|+ +++++..+|..+++ .+||.|++..+++|+ ++...+++++.++|||||
T Consensus 84 ~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 84 Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE
T ss_pred c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc
Confidence 8 89999999999999999999999998 47999999998865 489999999999999 678999999999999999
Q ss_pred eEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hh-cCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHh
Q 022810 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQ-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 239 (291)
Q Consensus 162 ~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~ 239 (291)
+++++.++....+..........|+.+|+||++.+|+...+.. .. .++.+ ..|...+.||.+|++.|+++|.++..+
T Consensus 161 ~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v-~~~~~~~~hY~~Tl~~W~~~f~~~~~~ 239 (273)
T PF02353_consen 161 RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEV-EDVENLGRHYARTLRAWRENFDANREE 239 (273)
T ss_dssp EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EE-EEEEE-HHHHHHHHHHHHHHHHHTHHH
T ss_pred EEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEE-EEEEEcCcCHHHHHHHHHHHHHHHHHH
Confidence 9999988876655433222345899999999999999887665 33 45654 457777899999999999999999988
Q ss_pred HhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE
Q 022810 240 IKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHF 284 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 284 (291)
+.++ |+ .++++.|+.|+.+|+++|++|.. ++.||
T Consensus 240 i~~~----~~----~~f~r~w~~yl~~~~~~F~~g~~---~~~Q~ 273 (273)
T PF02353_consen 240 IIAL----FD----EEFYRMWRYYLAYCAAGFRAGSI---DVFQI 273 (273)
T ss_dssp HHHH----SH----HHHHHHHHHHHHHHHHHHHTTSC---EEEEE
T ss_pred HHHh----cC----HHHHHHHHHHHHHHHHHHHCCCC---eEEeC
Confidence 8654 54 46899999999999999999885 57775
No 3
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=1.8e-39 Score=290.15 Aligned_cols=260 Identities=31% Similarity=0.655 Sum_probs=222.8
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p 86 (291)
.+..+++|||.+++||..+++++|+|++++|.. ..++.+++..+++.+++++.+.++.+|||||||+|.++..+++.+
T Consensus 112 ~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~- 189 (383)
T PRK11705 112 AWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY- 189 (383)
T ss_pred HHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-
Confidence 456788999999999999999999999999974 478999999999999999999999999999999999999999876
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEE
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+++|+|+|+|+++++.++++.. +. ++++...|+.+. +++||.|++..+++|+ .+...+++++.++|||||+++
T Consensus 190 g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 190 GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEE
Confidence 7899999999999999998874 33 588888898765 3689999999999998 456789999999999999999
Q ss_pred EEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhH
Q 022810 165 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIM 244 (291)
Q Consensus 165 i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~~ 244 (291)
+..++..... .....|+.+|+||++.+|+...+....+....+..|...+.||.+|+..|.++|.++..++..
T Consensus 265 l~~i~~~~~~-----~~~~~~i~~yifp~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~-- 337 (383)
T PRK11705 265 LHTIGSNKTD-----TNVDPWINKYIFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD-- 337 (383)
T ss_pred EEEccCCCCC-----CCCCCCceeeecCCCcCCCHHHHHHHHHCCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 9887654322 124679999999999999877766554443445567778899999999999999998877653
Q ss_pred HhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022810 245 ESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
.|| ..+++.|+.|+.+|+++|+.|. +++.|+++.||
T Consensus 338 --~~~----~~~~r~w~~yl~~~~~~F~~~~---~~~~q~~~~~~ 373 (383)
T PRK11705 338 --NYS----ERFYRMWRYYLLSCAGAFRARD---IQLWQVVFSPR 373 (383)
T ss_pred --hCC----HHHHHHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence 566 3689999999999999999988 56999999995
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.95 E-value=5.6e-25 Score=194.78 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=146.1
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEEcCCcchHHH
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERSRL-----EDGHTVLDVGCGWGSLSL 79 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~ 79 (291)
....+.+|||..+++|+.++++.++. ++|... .....+++.++++.+++.+.+ .++.+|||||||+|.++.
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~--g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~ 134 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHH--GYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSR 134 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCccee--eccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHH
Confidence 45688999999999999999987765 888764 467889999999999998887 678899999999999999
Q ss_pred HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhcc
Q 022810 80 YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 80 ~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 157 (291)
.+++++ +.+|+|+|+|+.+++.+++++...++ ++++++++|+.+.+.+ ++||+|++..+++|+++...+++++.++|
T Consensus 135 ~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 135 YLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred HHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 999887 78999999999999999999888877 4799999999988766 89999999999999999999999999999
Q ss_pred ccCeeEEEEeeccCC
Q 022810 158 KEDTLLFVHHFCHKT 172 (291)
Q Consensus 158 ~pgG~l~i~~~~~~~ 172 (291)
||||.+++.++.+..
T Consensus 214 kpGG~lvi~~~~~~~ 228 (340)
T PLN02244 214 APGGRIIIVTWCHRD 228 (340)
T ss_pred CCCcEEEEEEecccc
Confidence 999999998876543
No 5
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.90 E-value=3.3e-24 Score=170.21 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=156.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
...++..+...+..+|.|||||+|..+..|++++|++.++|+|.|++|++.|+++ +.+++|..+|+.++.++.+.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~~~~ 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPEQPT 93 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCCCcc
Confidence 3456677788888999999999999999999999999999999999999988654 34799999999999887899
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCccccccc---CCccchhhhhcc---CCCCCCcHHHHH-H
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED---TNDDDWITKYFF---TGGTMPSANLLL-Y 204 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~---~~~~~w~~~~~~---~~~~~~~~~~~~-~ 204 (291)
|++++|.++++++|...+|.++...|.|||+|.++.|+....+.+... .....|-...-- ....+++....- .
T Consensus 94 dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l 173 (257)
T COG4106 94 DLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL 173 (257)
T ss_pred chhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999988766655321 223345444311 123455544333 3
Q ss_pred hhcCcEEEEeeecCCCcH---HHHHHHHHH---------HHHhcH-----HhHhhhHHhccC-cchhHHHHHHHHHHHHH
Q 022810 205 FQDDVSVVDHWLVNGKHY---AQTSEEWLK---------RMDNNL-----ASIKPIMESTYG-KDQAVKWTVYWRTFFIA 266 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~---~~t~~~w~~---------~l~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 266 (291)
+......++.|++...|. ...+-+|.+ .|.+.. ..+..++.+.|+ +.+|++.+++.|.|++|
T Consensus 174 La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA 253 (257)
T COG4106 174 LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVA 253 (257)
T ss_pred hCcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEE
Confidence 344456688898876653 223344443 332221 224556666776 66777888888777765
Q ss_pred H
Q 022810 267 V 267 (291)
Q Consensus 267 ~ 267 (291)
.
T Consensus 254 ~ 254 (257)
T COG4106 254 T 254 (257)
T ss_pred e
Confidence 4
No 6
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.89 E-value=9.9e-22 Score=164.75 Aligned_cols=202 Identities=19% Similarity=0.276 Sum_probs=148.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
.+|||||||+|..+..+++.+|+.+|+|+|+|+.+++.+++++...++ ++++++.+|+...+.+++||+|++..+++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999999998788999999999999999999988777 4789999999766555789999999999999
Q ss_pred ccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHH-HHh-hcCcEEEEeeecCCCc
Q 022810 144 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLL-LYF-QDDVSVVDHWLVNGKH 221 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 221 (291)
++...+++++.++|+|||.+++..+....... ....+... ..++.... ..+ ..++.+.+.. ..+.+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~------~~~s~~~~~~~l~~~Gf~~~~~~-~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSA-----IEHEETTS------YLVTREEWAELLARNNLRVVEGV-DASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-----cccccccc------ccCCHHHHHHHHHHCCCeEEEeE-ECcHh
Confidence 99999999999999999999998764322110 01111111 12333322 222 3566666543 33567
Q ss_pred HHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecCC
Q 022810 222 YAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 291 (291)
Q Consensus 222 ~~~t~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 291 (291)
|.+++ |...|.++..++... .++ ....+.|.. +..++++|+.|. ++.+|++++|+++
T Consensus 149 ~~~~l--~~~~f~~~~~~~~~~---~~~----~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~k~~~ 205 (224)
T smart00828 149 IANFL--YDPGFEDNLERLYQD---DLD----EVTKRHFRG-IANLGKLLEKGL---ASYALLIVQKDEF 205 (224)
T ss_pred Hhhhc--cChhHHHHHHHhccc---cch----HHHHHHHhh-HHHHHHHHHhch---HhhEEEEEecccc
Confidence 77655 778887777666543 233 245677754 456666699977 6799999999853
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.88 E-value=2e-20 Score=160.04 Aligned_cols=246 Identities=16% Similarity=0.279 Sum_probs=162.7
Q ss_pred HHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE
Q 022810 10 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 89 (291)
Q Consensus 10 ~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~ 89 (291)
+.++|-+..-..|+..++....-. .. ......+++.+.+.++.+|||||||+|..+..+++.+ +.+
T Consensus 12 ~~~~y~~~~~~~~e~~~g~~~~~~--------gg-----~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~ 77 (263)
T PTZ00098 12 ENNQYSDEGIKAYEFIFGEDYISS--------GG-----IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAH 77 (263)
T ss_pred hccccccccchhHHHHhCCCCCCC--------Cc-----hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCE
Confidence 344555666788888877532211 11 2234567778888999999999999999999998765 789
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEE
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+|+|+.+++.++++... .+++.++++|+...+.+ ++||+|++..+++|++ +...+++++.++|||||.+++.
T Consensus 78 v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999987654 24799999999877665 7899999999888875 7889999999999999999998
Q ss_pred eeccCCcccccccCCccchhhhhcc-CCCCCCc-HHHHHHh-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022810 167 HFCHKTFAYHFEDTNDDDWITKYFF-TGGTMPS-ANLLLYF-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~ 243 (291)
.+....... . ...+ ..++. ....+.+ .+....+ ..++..++.... ...+.+.+..-++.+.++..++.
T Consensus 156 d~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~-- 226 (263)
T PTZ00098 156 DYCADKIEN-W----DEEF-KAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDI-SDYWLELLQVELKKLEEKKEEFL-- 226 (263)
T ss_pred EeccccccC-c----HHHH-HHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeC-cHHHHHHHHHHHHHHHHhHHHHH--
Confidence 775543211 0 0011 11110 0112223 2333333 346665554332 33344444455555555555543
Q ss_pred HHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022810 244 MESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
+.+|++..+.+...|...+-++.+ |. +.||+.+ ++||
T Consensus 227 --~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~wg~~~--~~~~ 263 (263)
T PTZ00098 227 --KLYSEKEYNSLKDGWTRKIKDTKR----KL-QKWGYFK--AQKM 263 (263)
T ss_pred --HhcCHHHHHHHHHHHHHHHHHhhc----cc-cccceEe--ecCC
Confidence 457776666677777666655553 44 4588876 5553
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=1.4e-21 Score=162.00 Aligned_cols=151 Identities=20% Similarity=0.345 Sum_probs=125.9
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC
Q 022810 8 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87 (291)
Q Consensus 8 ~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~ 87 (291)
+..++..||..+..|+.. +.-+.+ + ++ ..+-+.+++.+...+|.+|||+|||||..+..+++..+.
T Consensus 10 ~~~v~~vF~~ia~~YD~~-n~~~S~--g--------~~---~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~ 75 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLM-NDLMSF--G--------LH---RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGT 75 (238)
T ss_pred HHHHHHHHHhhHHHHHhh-cccccC--c--------ch---HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCC
Confidence 457777777777777643 221222 1 11 233455666666778999999999999999999999877
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+++|+|+.|++.+++++.+.+..+++|+.+|++.+|++ ++||+|.+...+.+++|.+.+|+++.|+|||||++++.
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 89999999999999999999988876699999999999998 99999999999999999999999999999999999888
Q ss_pred eeccCC
Q 022810 167 HFCHKT 172 (291)
Q Consensus 167 ~~~~~~ 172 (291)
.+..+.
T Consensus 156 e~~~p~ 161 (238)
T COG2226 156 EFSKPD 161 (238)
T ss_pred EcCCCC
Confidence 776653
No 9
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.87 E-value=1.3e-19 Score=168.23 Aligned_cols=217 Identities=20% Similarity=0.348 Sum_probs=151.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
.+.+++.+.+.++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++..... .++++.++|+...+.+ ++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCC
Confidence 4556666667788999999999999999999876 7899999999999999988775333 3799999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccC-CCCCCcHHHHHHh--hc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT-GGTMPSANLLLYF--QD 207 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~--~~ 207 (291)
||+|+|..+++|++++..++++++++|||||.+++.++....... ... ...++.. +..+++......+ ..
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~-~~~~~~~~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SPE-FAEYIKQRGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cHH-HHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999998876543221 111 1112211 2234443333332 34
Q ss_pred CcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q 022810 208 DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFR 287 (291)
Q Consensus 208 ~~~~~~~~~~~~~~~~~t~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 287 (291)
++..+.. ..-+.+|.+++..|...+.++..++.. .++++....+...|. ...+.+..++.. ||. ++.|
T Consensus 406 GF~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~----~~~~~~~~~~~~-wg~--~~a~ 473 (475)
T PLN02336 406 GFDDVIA-EDRTDQFLQVLQRELDAVEKEKDEFIS----DFSEEDYNDIVGGWK----AKLVRSSSGEQK-WGL--FIAK 473 (475)
T ss_pred CCeeeee-ecchHHHHHHHHHHHHHHHhCHHHHHH----hcCHHHHHHHHHhHH----HHHhhhcCCcee-eEE--EEEe
Confidence 6665543 333467899999999998877766643 466544444444553 334444454422 544 4566
Q ss_pred ec
Q 022810 288 KK 289 (291)
Q Consensus 288 ~~ 289 (291)
|.
T Consensus 474 k~ 475 (475)
T PLN02336 474 KK 475 (475)
T ss_pred cC
Confidence 63
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=1.4e-21 Score=163.45 Aligned_cols=154 Identities=17% Similarity=0.276 Sum_probs=92.0
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..+..++..||..+..|+.. +.-+.+ +. +...+ ..+++.+...++.+|||+|||+|..+..+++..
T Consensus 4 ~k~~~v~~~Fd~ia~~YD~~-n~~ls~--g~--------~~~wr---~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~ 69 (233)
T PF01209_consen 4 AKEQYVRKMFDRIAPRYDRM-NDLLSF--GQ--------DRRWR---RKLIKLLGLRPGDRVLDVACGTGDVTRELARRV 69 (233)
T ss_dssp -----------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGS
T ss_pred cHHHHHHHHHHHHHHHhCCC-ccccCC--cH--------HHHHH---HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHC
Confidence 34556777777777777643 211221 11 11112 234444566788999999999999999998875
Q ss_pred -CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeE
Q 022810 86 -SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 86 -p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
|..+|+|+|+|+.|++.|+++....+..+++++++|+++++.+ ++||+|++...++.++|....+++++|+|||||++
T Consensus 70 ~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 70 GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL 149 (233)
T ss_dssp S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 4679999999999999999999988777999999999999887 89999999999999999999999999999999999
Q ss_pred EEEeeccCCc
Q 022810 164 FVHHFCHKTF 173 (291)
Q Consensus 164 ~i~~~~~~~~ 173 (291)
++.+++.+..
T Consensus 150 ~ile~~~p~~ 159 (233)
T PF01209_consen 150 VILEFSKPRN 159 (233)
T ss_dssp EEEEEEB-SS
T ss_pred EEeeccCCCC
Confidence 9988876543
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=7.2e-21 Score=155.02 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.++.+|||+|||.|.++..+|+. |++|+|+|+++.+++.|+..+.+.++ ++.+.+..++++... ++||+|+|..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999998 89999999999999999999999888 688888888887765 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
+|++++..+++.+.+++||||.+++++++....+
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 9999999999999999999999999999865443
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=2.5e-19 Score=153.19 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=117.6
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
...+.++.+||..+..|+..-+. +.. + ...... ..+++.+.+.++.+|||+|||+|.++..++++.
T Consensus 30 ~~~~~v~~~f~~~A~~YD~~~~~-~s~--g--------~~~~~r---~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~ 95 (261)
T PLN02233 30 KCANERQALFNRIAPVYDNLNDL-LSL--G--------QHRIWK---RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKV 95 (261)
T ss_pred hhHHHHHHHHHHhhhHHHHhhhh-hcC--C--------hhHHHH---HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh
Confidence 44566778888888888743211 111 0 111111 223345567788999999999999999998874
Q ss_pred -CCCEEEEEcCCHHHHHHHHHHHHH---hCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccC
Q 022810 86 -SNCKITGICNSKTQKEFIEEQCRV---LELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 86 -p~~~v~~vD~s~~~~~~a~~~~~~---~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 160 (291)
|..+|+|+|+|++|++.|+++... ...++++++++|+++++.+ ++||+|+++.++++++++..+++++.++||||
T Consensus 96 ~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 96 GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 457999999999999999876542 2235799999999998877 78999999999999999999999999999999
Q ss_pred eeEEEEeeccCC
Q 022810 161 TLLFVHHFCHKT 172 (291)
Q Consensus 161 G~l~i~~~~~~~ 172 (291)
|.+++.++..+.
T Consensus 176 G~l~i~d~~~~~ 187 (261)
T PLN02233 176 SRVSILDFNKST 187 (261)
T ss_pred cEEEEEECCCCC
Confidence 999998876543
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.83 E-value=8.1e-20 Score=136.22 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc-cCCccCCCccEEEEcc-c
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI-STFEMEASYDRIYSIE-M 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~-~~~~~~~~~D~v~~~~-~ 139 (291)
|+.+|||||||+|.++..+++++|+.+|+|+|+|+.+++.+++++...+. ++++++++|+ ......++||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999977899999999999999999999966555 6899999999 4444447899999999 4
Q ss_pred cccc---ccHHHHHHHHHhccccCeeEEEEe
Q 022810 140 FEHM---KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++++ ++...+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4433 456889999999999999999865
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.82 E-value=2.3e-19 Score=141.25 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=98.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~-~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~~~~ 138 (291)
+++.+|||+|||+|.++..+++ ..|+.+++|+|+|+.+++.|+++++..+.++++++++|+.+++ .+++||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 5678999999999999999999999999888999999999966 337999999999
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++++.+...+++++.+.|+++|.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998775
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.80 E-value=5.8e-19 Score=150.77 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.....+++.+...++.+|||||||+|.++..+++++|+.+|+|+|+|+.+++.|++. +++++++|+.++...+
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~ 88 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKP 88 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCC
Confidence 345567777887888999999999999999999998889999999999999988652 5789999998775448
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+++.++++++++..+++++.++|||||.+++..+..
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 99999999999999999999999999999999999976543
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.79 E-value=3.5e-18 Score=143.93 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=104.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
..+++.+.+.++.+|||+|||+|..+..+++.. |+.+|+|+|+++.+++.++++....+.++++++++|+.+.+.+ ++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 456667778889999999999999999999875 5679999999999999999998877777899999999887655 79
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|++..+++++++...+++++.++|+|||.+++.+...
T Consensus 115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999999999999999999999999999998876544
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.79 E-value=8.7e-18 Score=143.84 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.....++..+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. +++.++.+|+..+...+
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~ 92 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQ 92 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCC
Confidence 3455667777778889999999999999999999988899999999999999988753 36889999998765557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+||+|+++.+++++++...+++++.++|+|||.+++..+.
T Consensus 93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9999999999999999999999999999999999997654
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=2.2e-18 Score=141.36 Aligned_cols=110 Identities=21% Similarity=0.337 Sum_probs=95.2
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++.++++...|+.+.+.+++||+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEE
Confidence 344445567789999999999999999987 789999999999999999999888887799999999887656789999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++.++++++ +...+++++.++|+|||++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998874 5788999999999999996553
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.79 E-value=2e-18 Score=150.72 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=95.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
.++.+|||||||+|.++..+++. +.+|+|||+++++++.|++++...+. .+++++++|+++++.. ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35779999999999999999875 88999999999999999988765544 4799999999887655 78999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++|+.++..+++++.++|||||.+++.+++.
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9999999999999999999999999988764
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.78 E-value=9.8e-18 Score=135.58 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.+++.+.-.-.++++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.|+++++..++++++++++|+.+....+
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~ 111 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEE 111 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCC
Confidence 34444433223445889999999999999999988888999999999999999999999998877999999998876557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|+++. +.+...+++.+.+.|+|||++++...
T Consensus 112 ~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 112 KFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred CccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 899999975 35678899999999999999988754
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=1.4e-18 Score=125.17 Aligned_cols=94 Identities=23% Similarity=0.421 Sum_probs=82.8
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccH
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 146 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~ 146 (291)
||+|||+|..+..++++ ++.+|+++|+++.+++.++++.... ++.+..+|+.+++.+ ++||+|++..+++++++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999988 6899999999999999998876543 466999999999877 999999999999999999
Q ss_pred HHHHHHHHhccccCeeEEE
Q 022810 147 QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 147 ~~~l~~~~~~L~pgG~l~i 165 (291)
..+++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999875
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=5.7e-18 Score=144.62 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=101.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-c-C
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-M-E 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~-~-~ 128 (291)
+..+++.+. .++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++....++ ++++++++|+.++. . +
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 455666665 45679999999999999999987 78999999999999999999988876 47999999998764 2 3
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++||+|++..++++++++..+++++.++|||||++++..++..
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 7899999999999999999999999999999999988766543
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.76 E-value=8.8e-18 Score=143.23 Aligned_cols=140 Identities=14% Similarity=0.224 Sum_probs=112.4
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC
Q 022810 8 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87 (291)
Q Consensus 8 ~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~ 87 (291)
+..++..|+.....|.. ....+....+.+++.+...++.+|||+|||+|.++..+++. +
T Consensus 6 k~~i~~~F~~aa~~Y~~-------------------~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~ 64 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQ-------------------HAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--G 64 (251)
T ss_pred HHHHHHHHHHHHHhHhH-------------------HHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--C
Confidence 45666667665555542 12334566667777776666789999999999999998875 7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 88 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+++|+|+.+++.++++.. ...++++|++.++.+ ++||+|+++.++++++++..++.++.++|+|||.+++.
T Consensus 65 ~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 65 SQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 899999999999998877532 356889999887766 78999999999999999999999999999999999998
Q ss_pred eeccCCc
Q 022810 167 HFCHKTF 173 (291)
Q Consensus 167 ~~~~~~~ 173 (291)
++...+.
T Consensus 140 ~~~~~~~ 146 (251)
T PRK10258 140 TLVQGSL 146 (251)
T ss_pred eCCCCch
Confidence 8876543
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.76 E-value=3.6e-17 Score=131.03 Aligned_cols=130 Identities=23% Similarity=0.368 Sum_probs=104.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC
Q 022810 33 SCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 112 (291)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~ 112 (291)
..|.|+ ...++....-+++.+... ++.+|||+|||+|.++..+++..|..+|+++|+++.+++.+++++..+++
T Consensus 7 ~~gvFs--~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFS--PPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTT--TTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeC--CCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 447775 345666656555555443 67799999999999999999998887899999999999999999999998
Q ss_pred CCeEEEEccccCCccCCCccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022810 113 QNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++++++..|+.+...+++||+|+++++++.-.+ ...+++.+.+.|+|||.+++...
T Consensus 81 ~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 81 ENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 669999999987554589999999999866543 57899999999999999987544
No 25
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.76 E-value=1.3e-18 Score=142.71 Aligned_cols=106 Identities=28% Similarity=0.458 Sum_probs=92.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-----CeEEEEccccCCccCCCccEEEEc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~-----~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
|++|||+|||+|.++..|++. +++|+|+|+++.+++.|++....... . ++++.+.|++... ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH
Confidence 488999999999999999988 89999999999999999998554443 1 3667777777765 569999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
.+++|+.|++.++..+.+.|||||.+++++..+.-.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTIL 201 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHH
Confidence 999999999999999999999999999998876543
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=1.2e-17 Score=136.74 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=92.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...++ ++.+...|+...+.+++||+|+
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~ 99 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIF 99 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEE
Confidence 34444556779999999999999999986 78999999999999999998888777 4788888887655557899999
Q ss_pred Eccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++.+++++ .+...+++++.++|+|||++++..
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999888 456789999999999999966543
No 27
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.75 E-value=3.5e-17 Score=131.58 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+++.+...++.++||+|||.|..+.+|+++ |..|+++|.|+..++.+++.+...++ +|+..+.|+.+...++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEE
Confidence 344455556789999999999999999998 99999999999999999999988888 599999999988777889999
Q ss_pred EEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++..+++++ +..+.+++.+.+.++|||++++.+..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 998888888 55678999999999999998886553
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.75 E-value=4.5e-17 Score=131.47 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=88.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
++.+|||+|||+|.++..++...|+.+|+++|.|+.+++.+++++++.++++++++++|+.++...++||+|+++. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h--
Confidence 4789999999999999999988778899999999999999999998888878999999999875447999999976 3
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+...+++.+.++|+|||.+++..
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456678889999999999998753
No 29
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.75 E-value=1.4e-17 Score=145.79 Aligned_cols=115 Identities=22% Similarity=0.154 Sum_probs=97.3
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022810 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~- 128 (291)
+.+.+++.+.+ .++.+|||||||+|..+..+++..++.+|+++|+|+.+++.++++.. ..+++++.+|+++.+.+
T Consensus 100 ~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 100 MRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred HHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC
Confidence 33445554444 46789999999999999999988777899999999999999988754 23688999999987765
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++||+|+++.+++++++...+++++.++|+|||.+++..+
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7899999999999999999999999999999999988654
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.74 E-value=3.9e-17 Score=133.28 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=106.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC------CEEEEEcCCHHHHHHHHHHHHHhCC-C--CeEEEEcccc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN------CKITGICNSKTQKEFIEEQCRVLEL-Q--NVEIIVADIS 123 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~------~~v~~vD~s~~~~~~a~~~~~~~~~-~--~i~~~~~d~~ 123 (291)
+.++.++...+++++||++||||.++..+.+..+. .+|+++|+|++|++.+++++.+.++ + ++.|+++|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 44556777788999999999999999999887654 7899999999999999999988777 2 3899999999
Q ss_pred CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 124 ~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+++++ .+||..++...+..+.++++.+++++|+|||||++.+-.+....
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 99998 99999999999999999999999999999999999877665543
No 31
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.73 E-value=1.6e-16 Score=120.40 Aligned_cols=115 Identities=20% Similarity=0.275 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-c-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-E 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-~-~ 128 (291)
....+++.+...++.+|||+|||+|..+..+++..|+.+|+++|+++.+++.+++++...+.++++++.+|+.... . .
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence 3445666677777889999999999999999998878899999999999999999998887778999999877532 1 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+||.|++..... ....+++.+.+.|+|||.+++...
T Consensus 87 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 87 PEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 6899999976543 446899999999999999988653
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=1.1e-16 Score=136.02 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=93.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH--CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~--~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
..++.+|||+|||+|..+..+++. .|+.+++|+|+|+.|++.|++++...+. .+++++++|+.+.+. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 356789999999999999998874 4789999999999999999999987766 379999999988755 458999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++++++ +...+++++.+.|||||.+++.+.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999985 346799999999999999999764
No 33
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.72 E-value=1.4e-16 Score=138.47 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-~~~i~~~~~d~~~~~~~~ 129 (291)
+...++..+...++.+|||+|||+|.++..++... ...|+|+|+|+.++..++...+..+ ..++.+..+++++++...
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 34567777777788999999999999999988774 3479999999999876544333222 236888889998876557
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|+|..+++|++++..++++++++|+|||.|++.+...
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 89999999999999999999999999999999999987643
No 34
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=1.4e-16 Score=139.86 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=96.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
.+.+...++..++.+|||||||+|.++..++... ...|+|+|+|+.++..++......+. .++.++.+|+++++.+++
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~ 189 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA 189 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence 3445555655578899999999999999999875 34699999999988765544333322 379999999998876688
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||+|+|..+++|+.++..+++++++.|+|||.+++.+...
T Consensus 190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 9999999999999999999999999999999999976543
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.71 E-value=2.7e-18 Score=125.20 Aligned_cols=96 Identities=24% Similarity=0.416 Sum_probs=67.6
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---ccCCCccEEEEcccccccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~---~~~~~~D~v~~~~~l~~~~ 144 (291)
||||||+|.++..+++.+|..+++++|+|+.+++.++++.......+......+..+. ..+++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999988999999999999999999888887654444444443332 2225999999999999999
Q ss_pred cHHHHHHHHHhccccCeeE
Q 022810 145 NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l 163 (291)
+...+++++.++|+|||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.71 E-value=2.5e-16 Score=135.86 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=98.1
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~ 136 (291)
..+.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++....+.++++++.+|+++++.+ ++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 346789999999999999888777664 4468999999999999999998888877899999999987765 78999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.++++.++...+++++.++|||||++++....
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 999999999999999999999999999997654
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=2.2e-16 Score=137.01 Aligned_cols=103 Identities=21% Similarity=0.330 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+.....+++||+|++..+++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhh
Confidence 34569999999999999999986 78999999999999999999988888 7899999988765568899999999998
Q ss_pred ccc--cHHHHHHHHHhccccCeeEEEEe
Q 022810 142 HMK--NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~~--~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++ +...+++++.++|+|||++++..
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 884 67889999999999999977644
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=2.5e-16 Score=133.03 Aligned_cols=120 Identities=20% Similarity=0.293 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCC---CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022810 48 EKAMLELYCERSRL---EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 48 ~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~ 124 (291)
+......+++.+.. ..+.+|||+|||+|.++..+++..|..+++++|+++.+++.++++.. +++.++.+|+.+
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~ 91 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEK 91 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhh
Confidence 33444444444332 34579999999999999999999888899999999999988877653 368899999998
Q ss_pred CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 125 FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 125 ~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
.+.+ ++||+|+++.++++..++..+++++.++|+|||.+++..+...
T Consensus 92 ~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 92 LPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 7755 7899999999999999999999999999999999999876554
No 39
>PRK08317 hypothetical protein; Provisional
Probab=99.70 E-value=6.3e-16 Score=130.55 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=101.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
.+.+++.+.+.++.+|||+|||+|..+..+++.+ |..+++++|+++.+++.++++... ...++.+..+|+...+.. +
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCC
Confidence 3455667788889999999999999999999886 678999999999999999887322 224799999999876655 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||+|++..+++++.++..+++++.++|+|||.+++..+..
T Consensus 87 ~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 87 SFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred CceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 89999999999999999999999999999999999887653
No 40
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.69 E-value=1.1e-15 Score=129.04 Aligned_cols=151 Identities=17% Similarity=0.293 Sum_probs=115.8
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022810 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..++.+..+|+...+-|+.+- ....+ +. .......++..+...++.+|||+|||+|..+..+++..
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~-~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~ 73 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMN-DLLSF--GL-----------HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAV 73 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHH-HHHhc--CC-----------cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHc
Confidence 445567777777666665321 10111 00 01233344555556678899999999999999999887
Q ss_pred C-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCee
Q 022810 86 S-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 86 p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 162 (291)
| ..+++++|+++.+++.+++++...+. .++.++.+|+.+.+.+ ++||+|++..++++..+...+++.+.++|+|||.
T Consensus 74 ~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~ 153 (239)
T PRK00216 74 GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGR 153 (239)
T ss_pred CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcE
Confidence 5 58999999999999999998876544 3689999999887655 7899999999999999999999999999999999
Q ss_pred EEEEeecc
Q 022810 163 LFVHHFCH 170 (291)
Q Consensus 163 l~i~~~~~ 170 (291)
+++.....
T Consensus 154 li~~~~~~ 161 (239)
T PRK00216 154 LVILEFSK 161 (239)
T ss_pred EEEEEecC
Confidence 98876543
No 41
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=9.7e-17 Score=117.37 Aligned_cols=94 Identities=19% Similarity=0.430 Sum_probs=79.5
Q ss_pred EEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc-cccc
Q 022810 67 VLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-EMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~-~~l~ 141 (291)
|||+|||+|..+..+++.+ |..+++|+|+|+.+++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999886 347999999999999999999988776 899999999997755 799999995 4588
Q ss_pred ccc--cHHHHHHHHHhccccCe
Q 022810 142 HMK--NYQNLLKKISKWMKEDT 161 (291)
Q Consensus 142 ~~~--~~~~~l~~~~~~L~pgG 161 (291)
|+. +...+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 884 56789999999999998
No 42
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.69 E-value=1.1e-15 Score=124.42 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..++..+...++.+|||+|||+|.++..+++.+|+.+|+++|+++.+++.+++++...++.+++++.+|... ..+++||
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D 99 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKAD 99 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCC
Confidence 344566677788999999999999999999988888999999999999999999988877779999998753 2346899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|++..... ....+++.+.+.|+|||++++....
T Consensus 100 ~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 100 AIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 999987653 3567899999999999999886543
No 43
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.69 E-value=4.1e-16 Score=131.94 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~ 138 (291)
.++.+|||+|||+|..+..+++.+ |+.+++|+|+|+.+++.|++++...+. .+++++++|+.+.+.+ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 467899999999999999999864 688999999999999999999877654 3789999999887654 689999999
Q ss_pred cccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++++++ +...+++++.++|+|||.+++..+.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 999984 4678999999999999999998654
No 44
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.69 E-value=2.6e-16 Score=124.68 Aligned_cols=99 Identities=28% Similarity=0.427 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
..++.+|||||||.|.++..+++. +.+++|+|+++.+++. .++.....+......+ ++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 567889999999999999999776 6799999999998876 1344444433343333 89999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
++|++++..+++++.++|||||++++.++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999999988653
No 45
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.68 E-value=7.8e-16 Score=136.77 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=101.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-
Q 022810 34 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL- 112 (291)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~- 112 (291)
.+.|+.. .++...+ .+++.+....+.+|||+|||+|.++..+++++|..+|+++|.|+.+++.+++++..++.
T Consensus 205 ~gVFs~~--~LD~Gtr----llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 205 ANVFSRT--GLDIGAR----FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378)
T ss_pred CCccCCC--CcChHHH----HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 4777743 4554433 34455554445699999999999999999999999999999999999999999987764
Q ss_pred --CCeEEEEccccCCccCCCccEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEe
Q 022810 113 --QNVEIIVADISTFEMEASYDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 --~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~-----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+++++..|+.....+.+||+|+|+++++... ...++++.+.++|+|||.+++..
T Consensus 279 ~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 279 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 36889988886543336899999999987542 24578999999999999999874
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.68 E-value=4.5e-16 Score=128.12 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCCc--cC-CCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~-~~~~--~~-~~~D~v~~~~ 138 (291)
++.+|||+|||+|..+..+++..|+.+|+|+|+|+.+++.+++++...+.+++.++++|+ +.++ .+ ++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 678999999999999999999888889999999999999999999888777899999999 6554 33 7899999976
Q ss_pred cccccc--------cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+..+.. ....+++++.++|+|||.+++.+..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 543321 1467999999999999999997654
No 47
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.67 E-value=8.8e-16 Score=131.31 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=100.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCEEEEEcCCHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~p-----~~~v~~vD~s~~~~~~a~~ 105 (291)
.+|-.....++......+..+++.....++.+|+|+|||+|. ++..+++..+ +.+|+|+|+|+.+++.|++
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 444445556666666666666554444566899999999996 5666666543 4689999999999999987
Q ss_pred HHHH----hC----------------------C-CCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHh
Q 022810 106 QCRV----LE----------------------L-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISK 155 (291)
Q Consensus 106 ~~~~----~~----------------------~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~ 155 (291)
..-. .+ + ++++|.++|+.+.+.+ ++||+|+|.+++++++ +...+++++.+
T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264)
T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264)
T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence 5310 00 1 2689999999987664 8999999999999995 45689999999
Q ss_pred ccccCeeEEEEe
Q 022810 156 WMKEDTLLFVHH 167 (291)
Q Consensus 156 ~L~pgG~l~i~~ 167 (291)
.|+|||++++..
T Consensus 231 ~L~pGG~L~lg~ 242 (264)
T smart00138 231 ALKPGGYLFLGH 242 (264)
T ss_pred HhCCCeEEEEEC
Confidence 999999999853
No 48
>PRK05785 hypothetical protein; Provisional
Probab=99.66 E-value=1.9e-15 Score=126.50 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++.. +.+|+|+|+|++|++.|++. ..++++|+++++.+ ++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 46799999999999999999886 57999999999999998753 23578999988876 8999999999999
Q ss_pred ccccHHHHHHHHHhccccC
Q 022810 142 HMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pg 160 (291)
+++++..+++++.++|||.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999994
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=3.5e-15 Score=123.17 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~ 127 (291)
.+...+++.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.+++++...+.. +++++.+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 3456677777788889999999999999999988753 469999999999999999999888874 58999999987543
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .+||+|++..++.+++ +++.+.|+|||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 3 7899999998876554 46788999999998854
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=3.6e-15 Score=124.65 Aligned_cols=115 Identities=24% Similarity=0.353 Sum_probs=98.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 130 (291)
..++..+...++.+|||+|||+|..+..+++..|. .+++++|+++.+++.++++.. ...++.++.+|+.+.+.+ ++
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCc
Confidence 34455555567899999999999999999988754 699999999999999988765 224789999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
||+|++..++++.++...+++++.+.|+|||++++....
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999999999999999999999999999987654
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=6.9e-16 Score=143.21 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=92.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~ 136 (291)
+..++.+|||+|||+|..+..+++.+|+.+++|+|+|+.+++.|+++....+. ++.++++|+.+++ .+ ++||+|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEE
Confidence 34468899999999999999999988999999999999999999988765554 6888999988765 33 78999999
Q ss_pred ccccccc-------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 137 IEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 137 ~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+.++|++ .+...+++++.++|||||.+++.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9988764 2567899999999999999999764
No 52
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=121.05 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=92.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccCCc-cC-CCccEEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE-ME-ASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~-~~~~d~~~~~-~~-~~~D~v~ 135 (291)
+.......|||+|||+|..-.+.--. |+.+||++|+++.|-+.+.+.+++....++. |+.++.++++ .+ +++|.|+
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred hcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 33334456899999999987766532 6899999999999999999999887555666 9999999987 33 8999999
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..+++.++++.+.|+++.++|+|||++++-..
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999999999999999999888543
No 53
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.65 E-value=4.4e-15 Score=123.57 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+...+++.+.+.++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++++++++++|+.+....
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3456677777888999999999999999999998853 457999999999999999999999888899999999775433
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+||+|++.....++ .+.+.+.|+|||++++...
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEEc
Confidence 789999998766444 3557888999999988643
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.65 E-value=3.1e-15 Score=132.13 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=92.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
++.+......+|||+|||+|.++..+++++|..+|+++|+|+.+++.++++++.+++ ..+++..|+... .+++||+|+
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIv 266 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMII 266 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEE
Confidence 333433445689999999999999999998888999999999999999999998877 467778887653 247899999
Q ss_pred Eccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 136 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++++|.. .....+++.+.+.|+|||.+++...
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999863 3457899999999999999988654
No 55
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.64 E-value=4.8e-15 Score=122.92 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..+...+++.+.+.++.+|||||||+|..+..+++.. ++.+|+++|+++++++.++++++..+..+++++++|......
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 4556677778888899999999999999999998875 346999999999999999999998888789999999876544
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+ .+||+|++......+ .+.+.+.|||||++++..
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 4 789999998766444 245677899999988854
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.64 E-value=7.4e-15 Score=123.50 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=103.3
Q ss_pred CccccchhHHHhhcCCC-hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcchH
Q 022810 2 PIAIQTDKAKEQHYELP-TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGSL 77 (291)
Q Consensus 2 ~~~~~~~~~~~~~yd~~-~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~ 77 (291)
-..++.+..+..+||.. .+.|....+... ...-...+........+.++..+ ...++.+|||+|||+|.+
T Consensus 4 ~~~~~~~~~v~~~~~~~~~~~w~~~y~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~ 77 (230)
T PRK07580 4 FNYLEHKSEVRTYFNRTGFDRWARIYSDAP------VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSL 77 (230)
T ss_pred hhhhhchhhhhHHHhhhccchHHHhhCcCc------hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHH
Confidence 34566778888888853 355555443311 11000111111223333333333 245678999999999999
Q ss_pred HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHH
Q 022810 78 SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKIS 154 (291)
Q Consensus 78 ~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~ 154 (291)
+..+++. +.+|+|+|+|+.+++.|+++....+. +++.+..+|+... .++||+|++..+++|++ +...+++.+.
T Consensus 78 ~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~ 153 (230)
T PRK07580 78 SIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHLA 153 (230)
T ss_pred HHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHHH
Confidence 9999987 66899999999999999999887766 5789999995432 37899999999998864 4567888888
Q ss_pred hccccCee
Q 022810 155 KWMKEDTL 162 (291)
Q Consensus 155 ~~L~pgG~ 162 (291)
+.++++++
T Consensus 154 ~~~~~~~~ 161 (230)
T PRK07580 154 SLTRGSLI 161 (230)
T ss_pred hhcCCeEE
Confidence 87654443
No 57
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.64 E-value=6.3e-15 Score=127.37 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++++...++ +++.++++|+.+....++||+|+++++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 446799999999999999999998889999999999999999999998887 4799999998653323689999998754
Q ss_pred ccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
... .....+++.+.+.|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 1135678889999999999988654
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=4.1e-15 Score=120.27 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...+. +++++.+|+.+.. .++||+|+++.++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCC
Confidence 3456799999999999999999874 4999999999999999999988776 6889999987643 3689999999988
Q ss_pred ccccc---------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 141 EHMKN---------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~---------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.++ ...+++++.++|+|||.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 66532 3568999999999999998876543
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.64 E-value=1.2e-14 Score=120.25 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=89.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEEccc
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVADI 122 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~i~~~~~d~ 122 (291)
++..+...++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..... .-.+++++++|+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 334333456789999999999999999987 999999999999999764321100 012689999999
Q ss_pred cCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 123 STFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 123 ~~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++... ++||.|+...++++++ ....+++.+.++|||||++++.+...
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 887643 6799999999888883 34669999999999999877776654
No 60
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.64 E-value=8.1e-15 Score=115.69 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=103.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
...+.++.+.++.+++|||||+|..++.++...|..+|+++|-++++++..++|+.+.+++|+.++.+++.+.... .++
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 3456788899999999999999999999998889999999999999999999999999999999999999886444 479
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
|.|+.... .+.+.+++.+...|||||++++.....++.
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLETL 141 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHHH
Confidence 99999887 366889999999999999999987766543
No 61
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.64 E-value=6e-15 Score=129.35 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=99.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~ 130 (291)
...+++.+...++.+|||||||+|..+..+++++|+.+++++|. +.+++.+++++.+.++ ++++++.+|+.+.+.+ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-C
Confidence 34456667777889999999999999999999999999999998 7899999999998887 4799999999865443 4
Q ss_pred ccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|+|++..++|+..+ ...+++++.+.|+|||++++.++..
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 799999999987744 3579999999999999999987643
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.64 E-value=1.8e-15 Score=123.80 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D~v~~~~ 138 (291)
+..+|||||||+|.++..+++.+|..+++|+|+++.+++.|++++...++++++++++|+.++. .+ +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999999998888889999999997643 23 5899999987
Q ss_pred ccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+..+.+. ...+++.+.++|||||.+++.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 6544322 15799999999999999988764
No 63
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=5.7e-15 Score=126.25 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCcchHHHH--HHHHCCCCEEEEEcCCHHHHHHHHHHHHH-hCC-CCeEEEEccccCCccC-CCccEEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLY--IAQKYSNCKITGICNSKTQKEFIEEQCRV-LEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~--l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~i~~~~~d~~~~~~~-~~~D~v~~ 136 (291)
.++.+|+|||||.|.++.. ++..+|+.+++++|.++++++.|++.+.. .++ ++++|..+|+.+.... +.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998854333 33457889999999999999999999964 666 4699999999886433 78999999
Q ss_pred ccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. +++++ +++.++++++.+.|+|||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 77777 789999999999999999999975
No 64
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.63 E-value=7.6e-15 Score=127.18 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=93.0
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022810 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~ 127 (291)
.+++.++..+. ..+..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++++...++. +++++++|+.+...
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~ 179 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA 179 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc
Confidence 34444444332 22336999999999999999999988889999999999999999999988874 59999999876432
Q ss_pred CCCccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 EASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+||+|+++++.... ..+..++..+.+.|+|||++++...
T Consensus 180 ~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 180 GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2489999998644211 1356788899999999999988664
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.63 E-value=2.7e-15 Score=119.38 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=85.9
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
.++...-.++||+|||.|.++..|+.+ ..+++++|+|+.+++.|++++... ++|+|.+.|+.+..++++||+|++.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEe
Confidence 456666789999999999999999998 468999999999999999988643 5899999999987766999999999
Q ss_pred cccccccc---HHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMKN---YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+++++.+ ...+++++...|+|||.+++.+.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999954 56789999999999999999765
No 66
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=3.1e-15 Score=124.17 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=97.8
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CCc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---ASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~---~~~ 131 (291)
.+........+|||||||+|..+..++++.+.+++++||+++++.+.|+++.+.+++ ++++++++|+.++... .+|
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 344555568899999999999999999998779999999999999999999999888 5899999999987644 569
Q ss_pred cEEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 132 DRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~v~~~~~l~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|+||+++... -+.+.+++.+.++|||||.+.+..+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 999999987543 13678999999999999999887654
No 67
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=7.6e-15 Score=124.35 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=104.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC
Q 022810 32 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 111 (291)
Q Consensus 32 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~ 111 (291)
..+|.|+... ++...+ .+++.+....+.+|||+|||.|.+++.+++..|..+++.+|.|..+++.+++++..++
T Consensus 133 t~pGVFS~~~--lD~GS~----lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~ 206 (300)
T COG2813 133 TLPGVFSRDK--LDKGSR----LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG 206 (300)
T ss_pred eCCCCCcCCC--cChHHH----HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC
Confidence 3458887543 333333 4556666666669999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEEccccCCccCCCccEEEEccccccccc-H----HHHHHHHHhccccCeeEEEEee
Q 022810 112 LQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-Y----QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 112 ~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~-~----~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++..+...|..+... ++||+|+||++||.-.+ . .++++...+.|++||.|.+..-
T Consensus 207 ~~~~~v~~s~~~~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 207 VENTEVWASNLYEPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCccEEEEeccccccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8665666777665433 59999999999986533 2 3799999999999999988654
No 68
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=9.6e-15 Score=127.40 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=87.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++++...++ ++++++++|+.+....++||+|+++++...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 3689999999999999999998889999999999999999999998887 469999999866433368999999875421
Q ss_pred c-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 143 M-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 143 ~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..+..+++.+.+.|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1135788999999999999998643
No 69
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.62 E-value=1.3e-14 Score=119.45 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
......+...+.. +.++.+|||+|||+|..+..+++..|+.+++|+|+|+.+++.|+++. .++.+.++|+.+
T Consensus 28 ~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~- 99 (204)
T TIGR03587 28 AAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD- 99 (204)
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-
Confidence 3333444444443 34677999999999999999998877899999999999999998753 256788899887
Q ss_pred ccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 126 EME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+ ++||+|+++.+++|++ +..++++++.+++ ++.+++....
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 444 8999999999999984 4577888888886 5677776553
No 70
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.62 E-value=7.3e-15 Score=130.81 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
+.+++.++..+ .++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++++...+. +++++++|+.+...
T Consensus 239 E~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~ 315 (423)
T PRK14966 239 EHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP 315 (423)
T ss_pred HHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc
Confidence 34455555443 356799999999999999999888889999999999999999999988876 89999999866432
Q ss_pred -CCCccEEEEcccccccc-------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022810 128 -EASYDRIYSIEMFEHMK-------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 -~~~~D~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.++||+|+|+++..... .+..+++.+.+.|+|||.+++..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 26799999998752110 13467777788999999988754
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.61 E-value=1.3e-14 Score=123.60 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
.++..+++.+. ..+.+|||+|||+|.++..+++..|..+++|+|+++.+++.+++++...+++++.++++|+.+....+
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCC
Confidence 44455555443 34569999999999999999998888899999999999999999999888877999999997743347
Q ss_pred CccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~--------------------------~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+||+|++++++.... ....+++.+.++|+|||.+++..
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 899999987754321 12467889999999999998854
No 72
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.61 E-value=2.6e-14 Score=117.27 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=92.4
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-cc-CCCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-~~-~~~~ 131 (291)
.+++.+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.+++++...+.++++++.+|+.+. .. ...+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455666777889999999999999999998777889999999999999999999888887899999998652 11 1346
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|.++... ..+...+++++.+.|+|||.+++..+..
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7766542 2356789999999999999999987643
No 73
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=4.4e-15 Score=111.47 Aligned_cols=104 Identities=23% Similarity=0.370 Sum_probs=88.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~-~~~D~v~~~~~ 139 (291)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.++...+. ++++++++|+.+.. .+ ++||+|+++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999985 58999999999999999999999887 58999999998865 33 89999999998
Q ss_pred cccc--------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~--------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+... .....+++++.+.|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8643 1346789999999999999988765
No 74
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.60 E-value=2.1e-14 Score=121.09 Aligned_cols=117 Identities=25% Similarity=0.343 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~ 127 (291)
..+..+...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.++..|+.+.+ .
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc
Confidence 33445545555567889999999999999999876 68999999999999999988876665 6788888887764 2
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.++||+|++..+++++++...+++.+.+.|+|||.+++..+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 378999999999999999999999999999999999987654
No 75
>PRK14967 putative methyltransferase; Provisional
Probab=99.60 E-value=2.2e-14 Score=120.01 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=91.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
+...+......++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...+. ++.++.+|+.+....++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCe
Confidence 4444555566778899999999999999998762 34999999999999999999988776 688999998764334789
Q ss_pred cEEEEcccccccc---------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMK---------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|+++.++.... ....+++++.++|||||++++...
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999997654321 145678889999999999987544
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.60 E-value=3.3e-14 Score=116.79 Aligned_cols=110 Identities=15% Similarity=0.329 Sum_probs=92.4
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~ 131 (291)
+..+.+.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.++++++..++ +++.++.+|+.+... .++|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 466788899999999999999999998764 457999999999999999999998884 689999999876422 2689
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|.|++... ..++..+++.+.+.|+|||++++...
T Consensus 113 D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99998652 35678899999999999999987544
No 77
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.59 E-value=3.6e-14 Score=118.51 Aligned_cols=115 Identities=21% Similarity=0.343 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEcccc
Q 022810 47 AEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~ 123 (291)
....+...+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++.+.++|+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 33445555666655 467889999999999999999876 67999999999999999999887765 47999999998
Q ss_pred CCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEE
Q 022810 124 TFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 124 ~~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i 165 (291)
..+ ++||+|++..++++++ +...+++++.+.+++++++.+
T Consensus 115 ~~~--~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 115 SLC--GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hCC--CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 865 7899999999988873 467789999998887765544
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=126.60 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=97.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccC-CC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-AS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~-~~ 130 (291)
.+++.+....+..+||||||+|.++..+|+..|...++|+|+++.+++.+.+++...+++++.++++|+..+ ..+ ++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 444455555677999999999999999999999999999999999999999999999988999999999764 223 78
Q ss_pred ccEEEEccccccccc------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHMKN------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+|.|+++.+..+... ...+++.+.++|+|||.+.+.+-..
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 999999876654422 2679999999999999999976543
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=4.6e-14 Score=121.92 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
..++.++......++.+|||+|||+|.++..++...|..+++++|+|+.+++.+++++......++.++.+|+.+....+
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~ 174 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGG 174 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCC
Confidence 34444444445567789999999999999999999888999999999999999999987222347999999986643337
Q ss_pred CccEEEEccccccc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~--------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+||+|++++++... ..+..+++++.++|+|||.+++..
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 89999998765321 124567888889999999998854
No 80
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.58 E-value=1.2e-14 Score=125.38 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=100.4
Q ss_pred hHHHhhcCCChHHHHHhhCC--CCCcccccc----CC-----CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchH
Q 022810 9 KAKEQHYELPTSFFKLVLGK--YFKYSCCYF----SD-----ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSL 77 (291)
Q Consensus 9 ~~~~~~yd~~~~~y~~~~~~--~~~y~~~~~----~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~ 77 (291)
....|+||...+=|-.++-. ......+.. .. ...............+.+.+ ..++.+|||+|||+|.+
T Consensus 21 C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l-~~~~~~vLDiGcG~G~~ 99 (272)
T PRK11088 21 CPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERL-DEKATALLDIGCGEGYY 99 (272)
T ss_pred cCCCCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhc-CCCCCeEEEECCcCCHH
Confidence 34578899888777666631 111111111 10 01112222222222232222 23567899999999999
Q ss_pred HHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHH
Q 022810 78 SLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKI 153 (291)
Q Consensus 78 ~~~l~~~~p~---~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~ 153 (291)
+..+++..+. .+++|+|+|+.+++.|+++. +++.+..+|+.+++.+ ++||+|++... ...++++
T Consensus 100 ~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~ 167 (272)
T PRK11088 100 THALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEEL 167 (272)
T ss_pred HHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHH
Confidence 9999887642 47999999999999887542 3688999999988766 78999998653 2346789
Q ss_pred HhccccCeeEEEEeeccC
Q 022810 154 SKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 154 ~~~L~pgG~l~i~~~~~~ 171 (291)
.++|||||++++..+...
T Consensus 168 ~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 168 ARVVKPGGIVITVTPGPR 185 (272)
T ss_pred HhhccCCCEEEEEeCCCc
Confidence 999999999999876543
No 81
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.4e-14 Score=113.98 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
-.+...+++.+.++++.+|||||||+|..+..+++. ..+|+.+|..+...+.|+++++..|+.|+.++++|...--.+
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 356778889999999999999999999999999998 559999999999999999999999998899999999874334
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+||.|+.......++. .+.+.|+|||++++-.-
T Consensus 136 ~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 89999999988876652 35677999999988654
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.58 E-value=3e-14 Score=132.24 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|++++...++ +++.++++|+.+....++||+|+++++..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 35689999999999999999888889999999999999999999988887 47999999986533236899999987543
Q ss_pred cc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 142 HM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~--------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.. ..+..+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 21 113457788889999999998864
No 83
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.57 E-value=9.4e-14 Score=121.07 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCccCCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.+..+ ..++.+..+|+.++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 5789999999999999999986 7899999999999999999887642 23678889998664 3789999999
Q ss_pred cccccccc--HHHHHHHHHhccccCeeEE
Q 022810 138 EMFEHMKN--YQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~~~--~~~~l~~~~~~L~pgG~l~ 164 (291)
.+++|+++ ...+++.+.+ +.++|.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99988865 3356666665 45665543
No 84
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.57 E-value=5.5e-14 Score=117.75 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=92.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+..++.+...|+.+.+.. ++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999998876 568999999999999999988877654688999998776543 789999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+++.++..+++.+.+.|+|||.+++..+.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999887653
No 85
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.57 E-value=6.2e-15 Score=117.08 Aligned_cols=151 Identities=17% Similarity=0.258 Sum_probs=111.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~D~v~~~ 137 (291)
+.|+.+|||+|||.|.+..+|.+.. +++.+|+|++++.+..+.+ . .+.++++|+++-. ++ ++||.|+++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----r---Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----R---GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----c---CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 3589999999999999999998863 8999999999997665543 3 4678999998732 33 899999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhh-ccCCCCCCcHHHHHHhhcCcEEEEeee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY-FFTGGTMPSANLLLYFQDDVSVVDHWL 216 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
.+++++.++..+|+++.|+ |...+++.|+. ..|..+. +.-.|++|.... +.-.|.
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF------------g~W~~R~~l~~~GrmPvt~~---------lPy~WY 138 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF------------GHWRNRLQLLLRGRMPVTKA---------LPYEWY 138 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecCh------------HHHHHHHHHHhcCCCCCCCC---------CCCccc
Confidence 9999999999999998765 55666666543 3354432 233566665321 233465
Q ss_pred cCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022810 217 VNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 217 ~~~~~~~~t~~~w~~~l~~~~~~~~~~ 243 (291)
.+..-..-|+++..+...+.+.+|.+.
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 554433568888888888888887654
No 86
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.57 E-value=7.9e-14 Score=115.82 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
....+++.+...++.+|||+|||+|..+..+++. ..+++++|.++.+++.+++++...+++++.++.+|..+.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 4456666777888999999999999999988877 358999999999999999999988887899999998664333 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998776544 3567889999999988665
No 87
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.57 E-value=1.5e-13 Score=114.12 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=87.2
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEEccc
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVADI 122 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~i~~~~~d~ 122 (291)
.+..+...++.+|||+|||.|..+..|+++ |.+|+|||+|+.+++.+.+..... ...+|++.++|+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 333344556789999999999999999987 999999999999998764311100 013689999999
Q ss_pred cCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++... ..||.|+...++++++ ....+++.+.++|+|||++++.+.
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 987544 6899999999988884 456799999999999997665444
No 88
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.56 E-value=2.4e-14 Score=111.30 Aligned_cols=126 Identities=18% Similarity=0.281 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcC---CCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEE
Q 022810 45 EDAEKAMLELYCERSR---LEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIV 119 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~ 119 (291)
++++.++++.+.+... +.... +|||+|||.|.+...|++..-....+|+|.|+.+++.|+..++..+.++ |+|.+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 3455667777766554 33333 9999999999999999988323459999999999999999999888865 99999
Q ss_pred ccccCCccC-CCccEEEEcccccccc--------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 120 ADISTFEME-ASYDRIYSIEMFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~v~~~~~l~~~~--------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.|+.+.... ++||+|.--..+..+. .+...+..+.+.|+|||+++|...+.
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 999886444 8899998877766551 12457888999999999999976654
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.56 E-value=7e-14 Score=118.73 Aligned_cols=117 Identities=10% Similarity=0.112 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
..+++.++..+. ..++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.|++++..++ ++++++|+.+...
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~ 147 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcc
Confidence 344444444433 223468999999999999999988878899999999999999999988764 4788999876422
Q ss_pred ---CCCccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 128 ---EASYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ---~~~~D~v~~~~~l~~~~--------------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++||+|+++++..... -+..+++.+.++|+|||.+++...
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 25799999998753210 134677888899999999998654
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.56 E-value=8.6e-14 Score=123.11 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
..++.....+++.+|||+|||+|.++..++.. +.+++|+|+++.++..++.+++..+++++.+..+|+.+++.. ++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 34455556788999999999999999887765 789999999999999999999998886789999999988765 789
Q ss_pred cEEEEccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|++++++... ..+..+++.+.++|+|||.+++..+..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999875321 125789999999999999998877654
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.5e-14 Score=120.47 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc-
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK- 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~- 144 (291)
+|||+|||+|..++.++...|..+|+|+|+|+.+++.|++|+..+++.++.++.+|+..... ++||+|++|++.-.-+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC-CceeEEEeCCCCCCCcc
Confidence 89999999999999999999888999999999999999999999997677777778766432 5999999999752221
Q ss_pred ------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 145 ------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ------------------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-...++..+.+.|+|||.+++..-
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 146688889999999999888654
No 92
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.55 E-value=1.1e-13 Score=117.21 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~ 129 (291)
+.+.+...+..-.|.+|||||||.|.++..++... ...|+|+|++.......+...+-.+.+ .+.....-+++++..+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455555544578999999999999999999884 457999999998776654433334432 2344445666665558
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.||+|+|.++++|..++-..|..+++.|+|||.+++.+...+.
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 9999999999999999999999999999999999998876544
No 93
>PRK04266 fibrillarin; Provisional
Probab=99.55 E-value=1.5e-13 Score=114.63 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccCCCcc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----~~~~~~D 132 (291)
+.+++.++.+|||+|||+|..+..+++..+..+|+++|+++.|++.+.++++.. +++.++.+|+... ...++||
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCC
Confidence 357888999999999999999999998875568999999999999887776653 4789999998752 1236799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+|++.... ......+++++.++|||||.+++..+
T Consensus 144 ~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 144 VIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99965321 11123468999999999999999644
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=4.3e-14 Score=131.32 Aligned_cols=114 Identities=21% Similarity=0.351 Sum_probs=92.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccC-
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~--~~~~- 128 (291)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++... ..+++.++++|+.. .+.+
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCC
Confidence 345556666667789999999999999999987 5699999999999987655321 22479999999964 3344
Q ss_pred CCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++||+|+++.+++++++ ...+++++.++|||||++++....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999999999965 578999999999999999987654
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=111.89 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCccCCCccEEEEcc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~--i~~~~~d~~~~~~~~~~D~v~~~~ 138 (291)
..++.+|||+|||+|..+..+++. +.+++++|.|+.+++.+++++...+..+ +.++.+|+.+.....+||+|+++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 357889999999999999999987 7899999999999999999998877743 889999987643336899999987
Q ss_pred ccccc---------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEHM---------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~---------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++... .....+++++.++|+|||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 76431 1245689999999999999887654
No 96
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.53 E-value=2.6e-13 Score=118.51 Aligned_cols=149 Identities=10% Similarity=0.060 Sum_probs=100.1
Q ss_pred hhcC-CChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEE
Q 022810 13 QHYE-LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKI 90 (291)
Q Consensus 13 ~~yd-~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v 90 (291)
-+|| .+.+.|+.+......| .... =.+........+++.+ .++.+|||+|||+|..+..+++..+ +.+|
T Consensus 21 ~~yd~~G~~lf~~i~~~peYy-----~tr~--E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~ 91 (301)
T TIGR03438 21 YFYDARGSELFEQICELPEYY-----PTRT--EAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARY 91 (301)
T ss_pred hcccchHHHHHHHHHCCCccc-----cHHH--HHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeE
Confidence 4555 5678888776543333 2000 0011112223333333 4668999999999999999998865 5899
Q ss_pred EEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-ccCCC-----ccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022810 91 TGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-EMEAS-----YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~-~~~~~-----~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG 161 (291)
+++|+|++|++.+++++..... -++.++++|+.+. ..... ..++++..+++++ ++...+++++++.|+|||
T Consensus 92 ~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 92 VPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999988765432 2578899999863 33322 2344445567766 346679999999999999
Q ss_pred eEEEEeecc
Q 022810 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~i~~~~~ 170 (291)
.+++..-..
T Consensus 172 ~~lig~d~~ 180 (301)
T TIGR03438 172 GLLIGVDLV 180 (301)
T ss_pred EEEEeccCC
Confidence 998855433
No 97
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.53 E-value=3.1e-13 Score=117.23 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++..+++. ++.+...+.... ..++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH
Confidence 467899999999999998888653 468999999999999999999988774 466666663332 23789999998654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ....++.++.+.|+|||.++++.+
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3 346789999999999999998765
No 98
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.53 E-value=1.4e-13 Score=113.07 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
-.+...+++.+.++++.+|||||||+|..+..++... +...|+++|.++...+.|++++...+..++.++++|...-..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 4566778888899999999999999999999999875 334799999999999999999999999899999999876443
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. .+||.|++......++ ..+.+.|++||++++..-
T Consensus 138 ~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 3 7899999998875443 336677999999988544
No 99
>PRK06202 hypothetical protein; Provisional
Probab=99.52 E-value=1.6e-13 Score=115.59 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~----~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~ 135 (291)
..++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|+++.... ++.+...+...++.+ ++||+|+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEE
Confidence 356789999999999999888753 34569999999999999998765433 456666666555444 7899999
Q ss_pred EcccccccccH--HHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.+++|+++. ..+++++.++++ |.+++.+...
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 99999999764 579999999987 5666655543
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.6e-13 Score=115.69 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
++.+|||+|||+|.+++..++.. ..+++|+|++|.+++.+++|+..++++. ++....+....+..++||+|++|-.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-
Confidence 78999999999999999999873 4569999999999999999999998843 33444444443333699999998532
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEee
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.-...+...+.+.|||||+++++.+
T Consensus 240 --~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 240 --EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred --HHHHHHHHHHHHHcCCCceEEEEee
Confidence 2245788899999999999999764
No 101
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.50 E-value=8e-15 Score=117.96 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=111.8
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC
Q 022810 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 86 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p 86 (291)
+..-+...||..++-|+..+-+.+.|+. -.++..++.+++..+-.++||+|||||..+..+...
T Consensus 83 P~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-- 146 (287)
T COG4976 83 PSAYVETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-- 146 (287)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--
Confidence 3456677788888888887777677742 355677777777777889999999999999999887
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeE
Q 022810 87 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
..+++|||+|++|++.|.++ ++ .-...++|+..+. ..++||+|++..++.++.+...++..+...|+|||.+
T Consensus 147 a~~ltGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlf 221 (287)
T COG4976 147 ADRLTGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLF 221 (287)
T ss_pred HhhccCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceE
Confidence 67899999999999888763 22 1233455554433 2278999999999999999999999999999999999
Q ss_pred EEEee
Q 022810 164 FVHHF 168 (291)
Q Consensus 164 ~i~~~ 168 (291)
.++.-
T Consensus 222 aFSvE 226 (287)
T COG4976 222 AFSVE 226 (287)
T ss_pred EEEec
Confidence 98654
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=2.9e-13 Score=111.84 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=81.9
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022810 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--- 126 (291)
+..+.++.. ++++.+|||||||+|..+..+++.. +..+|++||+++. .+..++.++++|+.+..
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLK 107 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHH
Confidence 334444444 4678899999999999999999885 3469999999881 12346899999998853
Q ss_pred -----cC-CCccEEEEccccccccc-----------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 127 -----ME-ASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 -----~~-~~~D~v~~~~~l~~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.. ++||+|+|+.+.+...+ ...+++.+.++|+|||.+++..+..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 22 78999999875544321 1468899999999999999976644
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=6e-13 Score=116.26 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+...+++.+.++++.+|||||||+|..+..+++..+ ...|+++|+++.+++.|+++++..+.+++.++++|+......
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 3455667777788899999999999999999998763 247999999999999999999988887899999998765444
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+||+|++......+ ...+.+.|+|||.+++..
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 689999997655333 345678899999988754
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.50 E-value=3.9e-13 Score=114.42 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++..+++ +++.+..+| .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH
Confidence 468899999999999999877653 34699999999999999999988876 334433332 269999997543
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.....+++++.++|||||.++++.+
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2346788999999999999998754
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=7.3e-13 Score=109.24 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=102.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~ 129 (291)
...++..+++.++.+|||.|.|+|.++.+|+.. .|..+|+.+|..++..+.|++|++..++. ++++..+|+.+...++
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 345677789999999999999999999999974 46689999999999999999999999885 4999999999876668
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.||.|+. .++++.++++++.+.|+|||.+++..|+.+.
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 9999998 5689999999999999999999998776543
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=4.7e-13 Score=115.24 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~ 128 (291)
++.-.+++.+ ..++.+|||+|||+|.+++..++.. ..+|+++|+++.+++.|++|+..+++. ++.+ ....+.. .
T Consensus 149 ~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~-~ 223 (295)
T PF06325_consen 149 RLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV-E 223 (295)
T ss_dssp HHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC-C
T ss_pred HHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc-c
Confidence 3333344444 3567899999999999999999873 458999999999999999999999984 3433 2222222 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.+||+|++|-... -...++..+.++|+|||.++++.+-
T Consensus 224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEcccc
Confidence 7899999986542 3356788889999999999997653
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=8.9e-13 Score=120.55 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=93.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~~~ 130 (291)
.++..++..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++++..++ +++++++|+.+... .++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCC
Confidence 34445677889999999999999999999987667999999999999999999999887 57899999987532 267
Q ss_pred ccEEEEccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~----------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||.|+++.+.... .....++..+.+.|||||.+++++.+.
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999987653211 113468999999999999999877543
No 108
>PHA03411 putative methyltransferase; Provisional
Probab=99.47 E-value=2.1e-12 Score=109.01 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=99.5
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022810 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~ 92 (291)
..||.....|+.|-+..++-...+|.. . ..+..++ +...+..+|||+|||+|.++..++.+.++.+|++
T Consensus 25 ~~~~~~~~v~~~~~g~~~~~~G~FfTP--~-------~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~g 93 (279)
T PHA03411 25 LTYEEKEFCYNNYHGDGLGGSGAFFTP--E-------GLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVC 93 (279)
T ss_pred cccCcHHHHHHhcccccccCceeEcCC--H-------HHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEE
Confidence 346655666777776654443334431 1 1121221 1223456999999999999999988765689999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccccc--------------------HHHHHHH
Q 022810 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--------------------YQNLLKK 152 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~--------------------~~~~l~~ 152 (291)
+|+++.+++.++++. +++.++++|+.+.....+||+|++++++.+.+. ...++..
T Consensus 94 VDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~ 168 (279)
T PHA03411 94 VELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD 168 (279)
T ss_pred EECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhh
Confidence 999999999988753 368899999998765578999999999987521 2456677
Q ss_pred HHhccccCeeEEEEee
Q 022810 153 ISKWMKEDTLLFVHHF 168 (291)
Q Consensus 153 ~~~~L~pgG~l~i~~~ 168 (291)
...+|+|+|.+++...
T Consensus 169 v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 169 VGYFIVPTGSAGFAYS 184 (279)
T ss_pred hHheecCCceEEEEEe
Confidence 7889999998777633
No 109
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.46 E-value=5.7e-13 Score=122.43 Aligned_cols=114 Identities=19% Similarity=0.306 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-
Q 022810 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE- 126 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~- 126 (291)
...+++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++++++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 4556777777777778899999999999999999987 5799999999999999999999888878999999997532
Q ss_pred ---cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 ---ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ---~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.. ++||+|+++++-... ...++.+.+ ++|++++++++
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~---~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA---AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh---HHHHHHHHh-cCCCeEEEEEe
Confidence 22 579999999886543 355565555 68999988875
No 110
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.3e-12 Score=120.27 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=92.9
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCcc
Q 022810 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D 132 (291)
...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+++++++++|+.+... +++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 243 APALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 345567788999999999999999999875 567999999999999999999999998779999999987642 26899
Q ss_pred EEEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeec
Q 022810 133 RIYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~v~~~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+++.+.... + ....+++.+.++|||||.++.++.+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99997653211 1 1245899999999999999876543
No 111
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.45 E-value=1.3e-12 Score=111.87 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~ 135 (291)
.+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..++.++.++..|...+... ++||.|+
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 45677899999999999999999988753 358999999999999999999999887899999998776433 6799999
Q ss_pred Eccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~----------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.+.... .....+|+.+.+.|||||+++.++.+.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 87643221 123458999999999999998876543
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.45 E-value=1.1e-12 Score=95.11 Aligned_cols=100 Identities=27% Similarity=0.453 Sum_probs=85.5
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEcccccc-
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMFEH- 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D~v~~~~~l~~- 142 (291)
+|+|+|||.|..+..+++ .+..+++++|+++..++.+++........++.++..|+.+... ..++|+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999999987 4578999999999999988864444444578999999988764 378999999999988
Q ss_pred cccHHHHHHHHHhccccCeeEEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678889999999999999999875
No 113
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.9e-12 Score=118.97 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=92.9
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
..+...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.++++++..|+++++++++|+......++||+|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 445667889999999999999999887652 4699999999999999999999999878999999998875447899999
Q ss_pred Eccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~----------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+..+.... .....++..+.+.|+|||++++++.+.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 75432110 113468999999999999999987654
No 114
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.5e-12 Score=118.92 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~ 133 (291)
..++..++.+|||+|||+|..+.++++.. ++.+|+++|+++.+++.++++++..|+++++++.+|+..++ ..++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 34567889999999999999999999875 45799999999999999999999999877999999998765 2378999
Q ss_pred EEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+++.+.... + ...+++..+.+.|||||.++.++.+.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986644222 1 23567999999999999998887754
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=2.1e-12 Score=118.35 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=94.3
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-C
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-E 128 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~-~ 128 (291)
+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+++++++++|+.... . .
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 3445677889999999999999999999875 34699999999999999999999999878999999998764 2 2
Q ss_pred CCccEEEEccc------cccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 129 ASYDRIYSIEM------FEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++||.|++..+ +...++ ..+++.++.+.|||||+++.++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999998653 222222 4678999999999999998876543
No 116
>PRK04457 spermidine synthase; Provisional
Probab=99.43 E-value=9.6e-13 Score=112.43 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~D~v~~~~ 138 (291)
.++.+|||||||+|.++..+++..|+.+++++|+++.+++.|++++...+. ++++++.+|+.+... +++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456799999999999999999999999999999999999999998765443 579999999876432 26899999864
Q ss_pred cc-cccc---cHHHHHHHHHhccccCeeEEEEeec
Q 022810 139 MF-EHMK---NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l-~~~~---~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.- ...+ ....+++.+.+.|+|||++++..+.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 11 1111 2368999999999999999986543
No 117
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=3.7e-12 Score=103.96 Aligned_cols=107 Identities=14% Similarity=0.243 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--~~~~D~v~~~~~ 139 (291)
.++.+|||+|||+|.++..++.+. ..+|+++|.++.+++.++++++..++++++++++|+.+... ..+||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 457899999999999999765554 47999999999999999999999888789999999876432 257999999999
Q ss_pred ccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~--~L~pgG~l~i~~~~~ 170 (291)
+.. .-...+++.+.. +|+|+++++++....
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 532 224456666655 489999999986654
No 118
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=1.7e-12 Score=103.92 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=85.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 131 (291)
+.+++.+...++.+|||||||+|.++..++++ +.+++++|+++.+++.+++++.. .++++++.+|+.++..+ .+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 45667777788899999999999999999987 68999999999999999988754 34799999999998766 569
Q ss_pred cEEEEcccccccccHHHHHHHHHhc--cccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKW--MKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~--L~pgG~l~i~~ 167 (291)
|.|+++.+++.. ...+.++.+. +.++|.++++.
T Consensus 79 d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 999999887532 3444444432 44788887754
No 119
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.42 E-value=5e-12 Score=107.14 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D 132 (291)
..+.......+..+|||||+|.|.++..+++++|+.+++.+|+ |..++.+++ .++++++.+|+. .+.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc-cc
Confidence 4455666777788999999999999999999999999999999 888887776 348999999998 34445 99
Q ss_pred EEEEcccccccc--cHHHHHHHHHhccccC--eeEEEEeecc
Q 022810 133 RIYSIEMFEHMK--NYQNLLKKISKWMKED--TLLFVHHFCH 170 (291)
Q Consensus 133 ~v~~~~~l~~~~--~~~~~l~~~~~~L~pg--G~l~i~~~~~ 170 (291)
+++...++|..+ +...+|+++++.|+|| |+|+|.+...
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 999999999985 4567999999999999 9999977654
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.42 E-value=3.8e-12 Score=116.45 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=92.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---CC
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EA 129 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~---~~ 129 (291)
.+...++..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++++..|++ ++.+..+|...... .+
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 445556778899999999999999999998876689999999999999999999998874 23446677655432 26
Q ss_pred CccEEEEccc------cccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEM------FEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+||.|++..+ +...++ ...+|.++.++|||||.++.++.+.
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 7999997643 322222 3679999999999999999987754
No 121
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=6.3e-12 Score=104.17 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-h-----------CCCCeEEEE
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-L-----------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-~-----------~~~~i~~~~ 119 (291)
+..+++.+...++.+||..|||.|.....|+++ |.+|+|+|+|+.+++.+.+.... . ..++|++.+
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 334444456777889999999999999999988 89999999999998887433221 0 113689999
Q ss_pred ccccCCccC--CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 120 ADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+|+.++... ++||+|+=...++.+ .......+.+.++|+|||.+++.+..
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999998765 689999999999888 45678999999999999995554443
No 122
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.40 E-value=1.6e-11 Score=101.74 Aligned_cols=111 Identities=20% Similarity=0.221 Sum_probs=89.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH------------HhCCCCeEEEEccccC
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR------------VLELQNVEIIVADIST 124 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~i~~~~~d~~~ 124 (291)
..+...++.+||+.|||.|..+..|+++ |.+|+|+|+|+..++.+.+... .....++++.++|+.+
T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 3444556789999999999999999998 8999999999999988755210 0011379999999999
Q ss_pred Ccc--C--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022810 125 FEM--E--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~--~--~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.. . ++||+|+-...+++++ ...+..+.+.++|+|||.+++.+..
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 853 1 6899999999999994 3567999999999999998887664
No 123
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.40 E-value=3.2e-12 Score=107.44 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~ 126 (291)
...+..+++ ..++.+|||+|||+|..+..++...+ +.+++++|+++++++.|+++++..++ ++++++.+|+.+..
T Consensus 57 g~~L~~l~~---~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVK---IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHH---HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 334444443 34577999999999999999987754 57999999999999999999999998 47999999997642
Q ss_pred c-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .++||+|++...- +.+..+++.+.+.|+|||++++..
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 2589999987532 456788999999999999988754
No 124
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.39 E-value=3.1e-12 Score=104.77 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=79.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cC-C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-ME-A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~-~~-~ 129 (291)
+.+.+.+ +++.+|||+|||+|.++..+++.. +..++|+|+++.+++.+++ . +++++++|+.+ .+ .+ +
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccccCCC
Confidence 3444443 367899999999999999888654 6789999999999887753 1 46788888875 32 33 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+||+|+++.+++|++++..+++++.+.++ .+++..+
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 89999999999999999999999887654 4444433
No 125
>PTZ00146 fibrillarin; Provisional
Probab=99.39 E-value=5.9e-12 Score=107.38 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 131 (291)
+.+.+.++.+|||+|||+|..+..++... +...|++||+++.+.+.+.+.++.. +||.++.+|+.... ...++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 44567899999999999999999999886 3468999999998766555554432 47899999986521 12679
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|++... ...+...++.++.++|||||.+++.
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999874 2233345667899999999999984
No 126
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.38 E-value=5.3e-12 Score=110.99 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
..+++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++++++++++|+.++..
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh
Confidence 344444445444345689999999999999999986 78999999999999999999999988789999999987543
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 -~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++||+|+++++-..+. ..+++.+ ..++|++++++++-
T Consensus 237 ~~~~~D~Vv~dPPr~G~~--~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGIG--KELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred cCCCCeEEEECCCCCCcc--HHHHHHH-HHcCCCeEEEEECC
Confidence 25799999998753321 2333333 33678887777543
No 127
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.38 E-value=7.4e-12 Score=105.02 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc-
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~- 127 (291)
-+..++..+++.||.+|||.|.|+|.++..|++. .|..+|+.+|..++..+.|+++++..++ +++++.+.|+....+
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 3566778889999999999999999999999975 4778999999999999999999999999 479999999975322
Q ss_pred ---CCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeeccC
Q 022810 128 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~~~ 171 (291)
+..+|.|+. .++++...+..+.+.| +|||++++-.|+.+
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 267999988 4577888999999999 89999999877654
No 128
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=4.2e-12 Score=109.79 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCcc--CCCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEM--EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~i~~~~~d~~~~~~--~~~~D~ 133 (291)
.+.+.+||+||||.|..+..+++..+..+|++||+++.+++.|++.+...+ .++++++.+|+..+.. .++||+
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346789999999999999999876445689999999999999999886432 2479999999887532 278999
Q ss_pred EEEccccccccc----HHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++...-...+. ..++++.+++.|+|||++++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999754322211 36789999999999999887543
No 129
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=102.58 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=98.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 33 SCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..+.|-...++ +..++.+++.+ ....+..|||+|||+|..+..++...|.+.|+++|.|+.++..|.+|+..
T Consensus 120 ~pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr 194 (328)
T KOG2904|consen 120 KPGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR 194 (328)
T ss_pred cCCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH
Confidence 33555444443 34444444443 33456689999999999999999988999999999999999999999999
Q ss_pred hCC-CCeEEEEccccCC----c-cC-CCccEEEEccccccccc--------------------------HHHHHHHHHhc
Q 022810 110 LEL-QNVEIIVADISTF----E-ME-ASYDRIYSIEMFEHMKN--------------------------YQNLLKKISKW 156 (291)
Q Consensus 110 ~~~-~~i~~~~~d~~~~----~-~~-~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~ 156 (291)
.++ +++.+++.+++.. . .. +++|+++||++.-.-.| ...++.-+.++
T Consensus 195 ~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~ 274 (328)
T KOG2904|consen 195 LKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM 274 (328)
T ss_pred HhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh
Confidence 888 4677776555432 1 12 78999999997522211 34466677899
Q ss_pred cccCeeEEEEeeccCC
Q 022810 157 MKEDTLLFVHHFCHKT 172 (291)
Q Consensus 157 L~pgG~l~i~~~~~~~ 172 (291)
|+|||.+.+.....+.
T Consensus 275 Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 275 LQPGGFEQLELVERKE 290 (328)
T ss_pred cccCCeEEEEeccccc
Confidence 9999999998765443
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.36 E-value=8.9e-12 Score=101.68 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=85.2
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCccEEEEcccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~~~~D~v~~~~~l 140 (291)
..+||||||.|.+...+|+.+|+..++|+|+....+..+.+++...+++|+.++++|+..+. .++++|.|+.+.+=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999999999999999999999999999999998832 23789999998765
Q ss_pred ccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 141 EHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-+.+. ...+++.+.++|+|||.+.+.+-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 54421 36799999999999999988653
No 131
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.36 E-value=1.3e-11 Score=101.17 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEc
Q 022810 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~ 120 (291)
.....+...+..+++.. ...+||||||++|..+..+++..| +.+|+.+|.+++..+.|+++++..|+ ++|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34555566666666544 467999999999999999998775 68999999999999999999999998 58999999
Q ss_pred cccCCcc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 121 DISTFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 121 d~~~~~~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+.+... .++||+|+....- .++...++.+.+.|+|||++++...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 9976421 1479999998643 5678889999999999999988543
No 132
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.36 E-value=9.7e-12 Score=101.32 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cC-C
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME-A 129 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--------~~-~ 129 (291)
.+.++.+|||+|||+|.++..++++. +..+|+++|+|+.+ ...++.++++|+.+.. .+ +
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45688999999999999999998875 45689999999863 1236888889987642 22 6
Q ss_pred CccEEEEccccc--------cc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 130 SYDRIYSIEMFE--------HM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~v~~~~~l~--------~~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+||+|+++.+.+ +. .+...++..+.++|+|||++++..+.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 799999965321 11 12367899999999999999986543
No 133
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=1e-11 Score=122.56 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----------------CCeEEEEccccCCcc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----------------QNVEIIVADISTFEM 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~i~~~~~d~~~~~~ 127 (291)
+.+|||+|||+|.+++.+++++|..+|+|+|+|+.+++.|++|+..+++ ++++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5689999999999999999998878999999999999999999987542 369999999987543
Q ss_pred C--CCccEEEEccccccc----------------------------------c----cHHHHHHHHHhccccCeeEEEEe
Q 022810 128 E--ASYDRIYSIEMFEHM----------------------------------K----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~--~~~D~v~~~~~l~~~----------------------------------~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .+||+|++|++.-.- . -+..++..+.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 369999999864110 0 02567788889999999999876
Q ss_pred ec
Q 022810 168 FC 169 (291)
Q Consensus 168 ~~ 169 (291)
-.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 54
No 134
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=8.2e-12 Score=112.37 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~-----~~~~D~v~ 135 (291)
++.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++++..++++ +++++++|+.+... .++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876653 2459999999999999999999999874 79999999987531 25899999
Q ss_pred Eccccccc---------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 136 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 136 ~~~~l~~~---------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++++...- .++..++..+.++|+|||.++..+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99875322 23556677788999999998876543
No 135
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.34 E-value=1.6e-11 Score=110.34 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.....++..+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.+++++++++.+|+.+.
T Consensus 216 ~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~ 293 (374)
T TIGR02085 216 KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF 293 (374)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH
Confidence 333444555545444345679999999999999999965 679999999999999999999999888899999999765
Q ss_pred ccC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 EME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
... .+||+|+++++-..+ ...+++.+.+ ++|++++++++
T Consensus 294 ~~~~~~~~D~vi~DPPr~G~--~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 294 ATAQMSAPELVLVNPPRRGI--GKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred HHhcCCCCCEEEECCCCCCC--cHHHHHHHHh-cCCCeEEEEEe
Confidence 322 569999999986433 2455566654 78999988875
No 136
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=101.26 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEE-ccccCC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV-ADISTF 125 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~-~d~~~~ 125 (291)
-..+..+++ ..++.+|||||++.|..+..++...| ..+++.+|.++++.+.|++++++.|++ ++..+. +|+.+.
T Consensus 48 g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 344444443 45788999999999999999999987 779999999999999999999999995 588888 587664
Q ss_pred cc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 126 EM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. .++||+|+....= .+++.+++.+.++|+|||.+++...
T Consensus 125 l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 33 2899999997533 5678999999999999999988544
No 137
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.33 E-value=9.6e-12 Score=99.81 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC--CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc
Q 022810 44 LEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 121 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d 121 (291)
+...|..+....++.+.+++ ..-|||||||+|..+..+... +..++|+|+|+.|++.|.+.--+ -.++.+|
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil~D 101 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLILCD 101 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeeeee
Confidence 44455667777777777766 678999999999999998876 78999999999999999873222 2467788
Q ss_pred ccC-CccC-CCccEEEEcccccccc-------c----HHHHHHHHHhccccCeeEEEEee
Q 022810 122 IST-FEME-ASYDRIYSIEMFEHMK-------N----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 122 ~~~-~~~~-~~~D~v~~~~~l~~~~-------~----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+-+ +++. ++||.||+...++++- + ...++..+..+|++|+..+++..
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 764 4554 8999999998887761 1 34578889999999999888754
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.31 E-value=1e-11 Score=119.98 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc--CCCccEEEEcc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~~--~~~~D~v~~~~ 138 (291)
++.+|||+|||+|.++..++... ..+|++||+|+.+++.|++++..++++ +++++++|+.+... .++||+|++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999999762 347999999999999999999999884 69999999876432 36899999987
Q ss_pred cccc-----------cccHHHHHHHHHhccccCeeEEEEee
Q 022810 139 MFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+... ..++..++..+.++|+|||.+++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6421 23567788899999999999888654
No 139
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.30 E-value=2.7e-11 Score=97.79 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=86.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCcc---------CCCccE
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM---------EASYDR 133 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~---------~~~~D~ 133 (291)
+.+|||||||+|.++.++++.+|..+..-.|.++..+...+......+.+|+ .-+..|+....- .++||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 3369999999999999999999999999999999998888888877776553 344566655421 158999
Q ss_pred EEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++.+++|-+ .....+++.+.+.|+|||.|++..|
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 9999999777 4568899999999999999998654
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=99.30 E-value=2.4e-11 Score=100.32 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .++.++.+|+.......+||+|++|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 36799999999999999998764 2568999999999999998764 257899999987655578999999998
Q ss_pred ccccc--c----------HHHHHHHHHhccccCee
Q 022810 140 FEHMK--N----------YQNLLKKISKWMKEDTL 162 (291)
Q Consensus 140 l~~~~--~----------~~~~l~~~~~~L~pgG~ 162 (291)
+.-.. + ...+++++.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 86441 1 45588888886666664
No 141
>PLN02476 O-methyltransferase
Probab=99.28 E-value=5.2e-11 Score=101.48 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccC
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~ 124 (291)
.+...+..+++ ..++.+||||||++|..+..++...| +.+++++|.+++..+.|++++++.|+. +++++.+|+.+
T Consensus 105 ~~g~lL~~L~~---~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 105 DQAQLLAMLVQ---ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHHH---hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 33444444443 34578999999999999999998654 568999999999999999999999994 89999999876
Q ss_pred Ccc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 125 FEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ~~~-------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
... .++||+|+....- .++..+++.+.+.|+|||.+++..
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEec
Confidence 421 2589999998653 567889999999999999988854
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.28 E-value=6.4e-11 Score=108.73 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
....+++.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++++++++.+|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 34456666677777777889999999999999999987 5699999999999999999999998888999999997632
Q ss_pred ----c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 ----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ----~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. ..+||+|+++++-..+ ...+++.+.+ ++|++.+++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEcC
Confidence 1 1479999998874322 2556666554 78999887753
No 143
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=100.79 Aligned_cols=107 Identities=23% Similarity=0.325 Sum_probs=86.1
Q ss_pred CEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
.+||++|||.|.....+.+..|. ..++++|.|+.+++..+++..... +++.....|+.... .+ +++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999887765 899999999999988887654332 35666666665432 22 899999999
Q ss_pred cccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 138 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 138 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+|..+ ......++++.++|||||.+++.+.+.-.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 999888 45678999999999999999998776543
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.28 E-value=6.1e-11 Score=102.04 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--CCCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~--~~~~D~v 134 (291)
.+.+.+||+||||+|..+..+++..+..+++++|+++.+++.+++.+...+ .++++++.+|...... .++||+|
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 445669999999999999998876545789999999999999999875532 1468888888765321 2789999
Q ss_pred EEccccccc--cc--HHHHHHHHHhccccCeeEEEEe
Q 022810 135 YSIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~--~~--~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
++....... .+ ..++++.+++.|+|||++++..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 997653222 12 4678999999999999998863
No 145
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.28 E-value=1.6e-11 Score=97.22 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=70.8
Q ss_pred EEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 91 TGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~---~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+|+.|++.|+++.+..+ .++++++++|+.+++.+ ++||+|++..+++++++...++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 589999999999987765322 24699999999998876 78999999999999999999999999999999999998
Q ss_pred eeccC
Q 022810 167 HFCHK 171 (291)
Q Consensus 167 ~~~~~ 171 (291)
++..+
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 77654
No 146
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.26 E-value=1e-10 Score=93.81 Aligned_cols=126 Identities=15% Similarity=0.218 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHH------cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CC
Q 022810 44 LEDAEKAMLELYCER------SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L-QN 114 (291)
Q Consensus 44 l~~~~~~~~~~~~~~------~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~ 114 (291)
+.++...+...+.+. ....++.+|||||||+|..++.++...+..+|+..|.++ .++.++.+++.++ . .+
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence 334445555555552 334578899999999999999999875578999999998 9999999998876 2 47
Q ss_pred eEEEEccccCCc----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 115 VEIIVADISTFE----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 115 i~~~~~d~~~~~----~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.+...|+.+.. .. .+||+|++..+++.-...+.+++.+.++|+|+|.+++....+
T Consensus 99 v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 888898886632 12 589999999999988889999999999999999977766543
No 147
>PLN02366 spermidine synthase
Probab=99.25 E-value=7.8e-11 Score=102.51 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC--C--CCeEEEEccccCCcc---CCCccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L--QNVEIIVADISTFEM---EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~--~--~~i~~~~~d~~~~~~---~~~~D~ 133 (291)
.+++.+||+||||.|..+..+++..+..+|+.||+++.+++.+++.+...+ . ++++++.+|+..... .++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 456789999999999999999865334689999999999999999876532 2 479999999865421 368999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEe
Q 022810 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|++...-...+ -...+++.+++.|+|||++++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99975432222 13578999999999999987754
No 148
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.25 E-value=3.3e-11 Score=105.76 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------C---CCeEEEEccccCCc------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------L---QNVEIIVADISTFE------ 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-------~---~~i~~~~~d~~~~~------ 126 (291)
++.+|||||||-|+...-..... -..++|+|++...++.|+++.+... . -...++.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78899999999888666665542 5689999999999999999983311 1 13677888876432
Q ss_pred cC-CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 127 ME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 127 ~~-~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.. .+||+|-|..++|+. .....+|+++.+.|+|||+++.++++...
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 22 489999999999998 34566999999999999999999987543
No 149
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.25 E-value=3.8e-11 Score=97.39 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCC------CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022810 49 KAMLELYCERSRLE------DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~ 122 (291)
..--..++.++... ...+.||.|+|.|..+..+.... ..+|..||+++..++.|++.+......-.++.+..+
T Consensus 35 i~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 35 IQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH
Confidence 33344455554332 45689999999999999876544 569999999999999999766542222367888999
Q ss_pred cCCccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++.++ .+||+|++.+++.|+ .+..++|+++++.|+|+|++++-.-
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 988766 799999999999999 4578899999999999999999654
No 150
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.25 E-value=7.7e-11 Score=97.78 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=90.9
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEcccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D~v~~~~~l 140 (291)
..+||||||.|.+...+|++.|...++|||+....+..|.+.+.+.+++|+.+++.|+..+. .+ ++.|-|+.+.+=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999999999999999999999999999999999989999999998743 23 599999998876
Q ss_pred ccccc--------HHHHHHHHHhccccCeeEEEEe
Q 022810 141 EHMKN--------YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~--------~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
-+.+. ...+++.+.+.|+|||.+.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 55522 4679999999999999999865
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=99.22 E-value=6.3e-11 Score=103.82 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-----HHhC--CCCeEEEEccccCCccC--CCc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-----RVLE--LQNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-----~~~~--~~~i~~~~~d~~~~~~~--~~~ 131 (291)
...+.+||+||||.|..+..+.+..+..+|++||+++++++.|++.. .... .++++++.+|+.++... ++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45667999999999999998887644579999999999999999621 1111 25899999999875322 689
Q ss_pred cEEEEcccccc---c--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEH---M--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~---~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|++...-.. . --..++++.+++.|+|||++++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999853211 1 1125689999999999999888643
No 152
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.4e-10 Score=91.49 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=70.2
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
..+.-.+.+|+|+|||||.+++..+-.. ..+|+|+|+++++++.+++|+.+. ..++.|+.+|+.++. .++|.|+.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC--CccceEEEC
Confidence 4455578899999999999999988763 478999999999999999999884 348999999999875 678999999
Q ss_pred cccccc
Q 022810 138 EMFEHM 143 (291)
Q Consensus 138 ~~l~~~ 143 (291)
+++...
T Consensus 116 PPFG~~ 121 (198)
T COG2263 116 PPFGSQ 121 (198)
T ss_pred CCCccc
Confidence 998554
No 153
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.21 E-value=1.3e-10 Score=105.92 Aligned_cols=129 Identities=22% Similarity=0.330 Sum_probs=89.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHH
Q 022810 36 YFSDASKTLEDAEKAMLELYCERSRLE----DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~----p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
.|+.+....+..+.+....+.+..... .+..|||+|||+|.++...++.. ...+|++||.|+.++..+++.+
T Consensus 155 ~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v 234 (448)
T PF05185_consen 155 VFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRV 234 (448)
T ss_dssp HHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHH
Confidence 444444444455555555555554433 25789999999999987766542 2369999999999888887777
Q ss_pred HHhCC-CCeEEEEccccCCccCCCccEEEEccc--ccccccHHHHHHHHHhccccCeeEE
Q 022810 108 RVLEL-QNVEIIVADISTFEMEASYDRIYSIEM--FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 108 ~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~--l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+.++. ++|+++.+|++++..+.++|+|||-.+ +..-+-.++.|....+.|||||+++
T Consensus 235 ~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 235 NANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 77777 689999999999988899999998553 2222445677888899999999864
No 154
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.20 E-value=2.9e-11 Score=98.54 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=74.3
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~ 143 (291)
.++|+|||+|..++.++.. -.+|+|+|+|+.|++.|++.....-. ...+....+..++... ++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 8999999999888888887 46999999999999988765433222 1233444444444433 899999999999888
Q ss_pred ccHHHHHHHHHhccccCe-eEEE
Q 022810 144 KNYQNLLKKISKWMKEDT-LLFV 165 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG-~l~i 165 (291)
|.+.+++.+.++||++| .+.+
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEE
Confidence 67899999999999877 4444
No 155
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.20 E-value=5.1e-10 Score=90.11 Aligned_cols=113 Identities=24% Similarity=0.274 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
+.++.+.-.-.+.... +++|||+|.|..++.++-.+|..+++.+|.+..-+...+......+++|++++++.+++....
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~ 113 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYR 113 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTT
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccC
Confidence 4445443322233333 899999999999999999999999999999999999999999999999999999999993334
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+||+|++..+ .....+++-+...+++||.+++-
T Consensus 114 ~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 114 ESFDVVTARAV----APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp T-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEE
Confidence 89999999865 46778899999999999998773
No 156
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.19 E-value=1.6e-10 Score=97.84 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--C----CeEEEEccccC
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--Q----NVEIIVADIST 124 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~----~i~~~~~d~~~ 124 (291)
++..++-..-.+++..++|+|||-|+-++-.-+.. -..++|+|++...++.|+++.+.-.- + .+.|+.+|...
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 34443333334678899999999999877776552 35899999999999999988765321 1 36889998765
Q ss_pred C------ccCC-CccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 125 F------EMEA-SYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 125 ~------~~~~-~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
. +++. +||+|-|..++|+. .....+++++.++|+|||+++-+.|+..
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 2 2233 49999999999886 4456699999999999999998888753
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=3.8e-10 Score=94.99 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~ 124 (291)
.+...+..+++. .+..+|||||+++|..+..++... ++.+++.+|.+++..+.|++++.+.|+ ++|+++.+|+.+
T Consensus 66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 334455555543 346799999999999999999875 467999999999999999999999997 689999999877
Q ss_pred Ccc--------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 125 FEM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 ~~~--------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
... .++||+|+...-- ..+...++.+.+.|+|||++++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEc
Confidence 421 1589999998542 45677888899999999998874
No 158
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.18 E-value=5.4e-10 Score=90.07 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE---------EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEE
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK---------ITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 119 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~---------v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~ 119 (291)
.+...++......++..|||..||+|++.++.+...+... ++|+|+++.+++.+++|++..++. .+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3445566667778899999999999999999877654555 899999999999999999999884 689999
Q ss_pred ccccCCccC-CCccEEEEccccccc-c-------cHHHHHHHHHhcccc
Q 022810 120 ADISTFEME-ASYDRIYSIEMFEHM-K-------NYQNLLKKISKWMKE 159 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~v~~~~~l~~~-~-------~~~~~l~~~~~~L~p 159 (291)
.|+.+++.. +++|.|++++++..- . -+..+++.+.++|++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 999998844 899999999988543 1 135577888888998
No 159
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=103.59 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC-----CCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME-----ASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~~-----~~~D~v 134 (291)
.|.+|||+-|=||.++.+.+.. |+ +||.||.|...++.|++|++.+++ +++.|+++|+.++... .+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3899999999999999999976 66 999999999999999999999998 3689999999886422 489999
Q ss_pred EEcccccc---------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~---------~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++.++-.. ..++..++..+.++|+|||.+++.+...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99885422 2567889999999999999999876654
No 160
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.17 E-value=2.7e-10 Score=91.93 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc-----cCCCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-----MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~-----~~~~~D~v~ 135 (291)
-++.++||+.||+|.++...+++. ..+|+.||.++..+..+++|++..+.. ++.++.+|+.... ...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 368999999999999999999884 468999999999999999999999884 5899999965432 137899999
Q ss_pred EcccccccccHHHHHHHHH--hccccCeeEEEEeeccCC
Q 022810 136 SIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~~~ 172 (291)
+.+++..-.....++..+. .+|+++|.++++......
T Consensus 120 lDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 120 LDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp E--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred ECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 9999865433577888886 789999999998876533
No 161
>PRK03612 spermidine synthase; Provisional
Probab=99.17 E-value=1.3e-10 Score=108.56 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHH--HHHh---C--CCCeEEEEccccCCcc--CCC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQ--CRVL---E--LQNVEIIVADISTFEM--EAS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~--~~~~---~--~~~i~~~~~d~~~~~~--~~~ 130 (291)
.+++.+|||||||+|..+..+++. +. .+++++|+++++++.++++ +... . .++++++.+|..+... +++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 356789999999999999999864 45 7999999999999999983 2221 1 1479999999987532 278
Q ss_pred ccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
||+|+++......+. ..++++.+++.|+|||+++++..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 999999865433221 24689999999999999988653
No 162
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.16 E-value=5.3e-10 Score=90.87 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc--c--C-CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--M--E-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~--~--~-~~~D~v~~ 136 (291)
.+.+|||++||+|.++..++++. ..+|+++|.++.+++.+++++...+.. +++++.+|+.+.. . . ..+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999884 348999999999999999999998874 6899999995532 1 1 24899999
Q ss_pred cccccccccHHHHHHHHH--hccccCeeEEEEeecc
Q 022810 137 IEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~--~~L~pgG~l~i~~~~~ 170 (291)
.+++.. .....++..+. .+|+++|+++++....
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 888753 34455566553 4689999988876543
No 163
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.15 E-value=3.2e-10 Score=96.88 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+.+.+
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 456677788888888999999999999999999988 67999999999999999987754 34799999999887543
Q ss_pred CCccEEEEcccccc
Q 022810 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~v~~~~~l~~ 142 (291)
.+|.|+++.+++.
T Consensus 91 -~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 -EFNKVVSNLPYQI 103 (258)
T ss_pred -hceEEEEcCCccc
Confidence 5899999988753
No 164
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.15 E-value=2.5e-10 Score=98.36 Aligned_cols=103 Identities=28% Similarity=0.428 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~-~~~D~v~~~ 137 (291)
.+-.+..|||+|||+|.++...++.. ..+|++||.|.-+ +.|.+.+..++.++ |+++.+.+++...| ++.|+|++-
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence 45578999999999999999999885 5789999997654 99999999999854 89999999998888 999999998
Q ss_pred cccccc---ccHHHHHHHHHhccccCeeEE
Q 022810 138 EMFEHM---KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~ 164 (291)
++=+.+ .-...++-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 765443 223444545568899999875
No 165
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.14 E-value=2e-10 Score=93.52 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHC----C-CCEEEEEcCCHHHHHHHHHHH----
Q 022810 41 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKY----S-NCKITGICNSKTQKEFIEEQC---- 107 (291)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~----p-~~~v~~vD~s~~~~~~a~~~~---- 107 (291)
...++......+..+++.....+..+|+..||++|. +++.+.+.. + ..+++|+|+|+.+++.|++-.
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 344444445455444444333467899999999995 344444421 1 369999999999999998611
Q ss_pred ----------HH-----hC--------C-CCeEEEEccccC-CccCCCccEEEEcccccccc--cHHHHHHHHHhccccC
Q 022810 108 ----------RV-----LE--------L-QNVEIIVADIST-FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKED 160 (291)
Q Consensus 108 ----------~~-----~~--------~-~~i~~~~~d~~~-~~~~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pg 160 (291)
.+ .+ + ++|+|...|+.+ .+..+.||+|+|.+++.++. ....+++.+++.|+||
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 00 01 1 468999999998 33338999999999999993 4578999999999999
Q ss_pred eeEEEE
Q 022810 161 TLLFVH 166 (291)
Q Consensus 161 G~l~i~ 166 (291)
|+|++.
T Consensus 169 G~L~lG 174 (196)
T PF01739_consen 169 GYLFLG 174 (196)
T ss_dssp EEEEE-
T ss_pred CEEEEe
Confidence 999984
No 166
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.14 E-value=4.9e-10 Score=100.47 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=84.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 142 (291)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|++.++++++.+.++|+..+.. .++||+|++++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 5689999999999999998876445899999999999999999999988778899999977543 367999999763
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.....++..+.+.+++||+++++.
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 334678888778889999999983
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=5.7e-10 Score=96.66 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=95.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccC-CC
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~~~-~~ 130 (291)
..++......+|..|||--||||++++.+.-. |++++|+|++..|+.-|+.|++..++....+... |+..++++ .+
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 34445556789999999999999999998865 9999999999999999999999998866666666 99999887 56
Q ss_pred ccEEEEccccccc-----cc----HHHHHHHHHhccccCeeEEEEee
Q 022810 131 YDRIYSIEMFEHM-----KN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~v~~~~~l~~~-----~~----~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+|.|++.++..-. .. +.++++.+.++|++||++++..+
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999998876332 11 57789999999999999988765
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.14 E-value=1.9e-09 Score=94.00 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEE-ccccCCc-----cCCCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIV-ADISTFE-----MEASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~i~~~~-~d~~~~~-----~~~~~D~v 134 (291)
++.++||||||+|.+...++.+.++.+++|+|+++.+++.|++++..+ ++ ++|++.. .|..... ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999888888777899999999999999999999998 67 4687754 3332221 12689999
Q ss_pred EEccccccc
Q 022810 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+||++++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999998755
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.13 E-value=4.6e-10 Score=97.24 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+. ++++++++|+.+...
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 456777888888888999999999999999999987 67899999999999999999877663 589999999987654
Q ss_pred CCCccEEEEccccccc
Q 022810 128 EASYDRIYSIEMFEHM 143 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~ 143 (291)
..||.|+++.+++..
T Consensus 100 -~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 -PYFDVCVANVPYQIS 114 (294)
T ss_pred -cccCEEEecCCcccC
Confidence 478999998877433
No 170
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.11 E-value=9.1e-10 Score=98.15 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022810 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~ 127 (291)
...+++.+++.+...+ .+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++++++++.+|+.++..
T Consensus 183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 3455566666554333 47999999999999999987 45999999999999999999999998889999999876422
Q ss_pred C-----------------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 128 E-----------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-----------------~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..||+|+..++-..+ ...+++.+.+ |++++++++-
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL--DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred HHhhccccccccccccccCCCCEEEECCCCCCC--cHHHHHHHHc---CCcEEEEEcC
Confidence 1 137999999884322 3455555544 7888888653
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.11 E-value=4.2e-10 Score=96.89 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
..++.+++.+...++.+|||||||+|.++..++++. .+|+|+|+++.+++.+++++.. ++++++++|+.+.+.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 455677777788888999999999999999999984 4999999999999999887643 47999999999876542
Q ss_pred -CccEEEEccccc
Q 022810 130 -SYDRIYSIEMFE 141 (291)
Q Consensus 130 -~~D~v~~~~~l~ 141 (291)
.+|.|++|.++.
T Consensus 104 ~~~~~vv~NlPY~ 116 (272)
T PRK00274 104 LQPLKVVANLPYN 116 (272)
T ss_pred cCcceEEEeCCcc
Confidence 258999998763
No 172
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.09 E-value=1.8e-09 Score=96.58 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
....+++.+.+.+... +.+|||++||+|.++..+++. ..+|+++|.++.+++.+++++..+++++++++.+|+.+..
T Consensus 191 ~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 191 VNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3345566665555432 357999999999999999887 4599999999999999999999999888999999997642
Q ss_pred c-----------------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 M-----------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~-----------------~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ..+||+|+..++-..+ ...+++.+.+ |++++++++-
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEeC
Confidence 1 1158999999985322 3455566654 6788777653
No 173
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.3e-09 Score=98.86 Aligned_cols=120 Identities=24% Similarity=0.324 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022810 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~ 122 (291)
........++..+++.+...++.++||+-||.|.++..++++ ..+|+|+|+++.+++.|+++++.++++|++|..+++
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a 350 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA 350 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH
Confidence 344555678888888888888899999999999999999976 789999999999999999999999998899999999
Q ss_pred cCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 123 STFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 123 ~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++... ..+|.|+..++=..+. ..+++.+.+ ++|..++++++
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHHh-cCCCcEEEEeC
Confidence 987543 4789999998765443 345555554 67888888865
No 174
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.08 E-value=5.6e-10 Score=90.91 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
..++.+|||+.||.|.+++.+++..++..|+++|++|.+++.++++++.++++ ++..+++|+.++.....+|.|+++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46799999999999999999998655789999999999999999999999984 58999999998865688999999875
Q ss_pred ccccccHHHHHHHHHhccccCeeEE
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
-. ...++..+.+++++||++.
T Consensus 179 ~~----~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES----SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS----GGGGHHHHHHHEEEEEEEE
T ss_pred HH----HHHHHHHHHHHhcCCcEEE
Confidence 43 2357788889999999864
No 175
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.07 E-value=1e-09 Score=93.46 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..+..|||+|||+|.++...++.. ..+|++|+. .+|.+.|++..+.+.+ ++|.++.+.++++..+++.|+|++-++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 467899999999999999998874 568999998 4588999999888877 6899999999999999999999997654
Q ss_pred ccc--ccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~--~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.-+ +..-+..-..++.|+|+|.++=.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 333 22223333456999999997654
No 176
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.07 E-value=7.1e-10 Score=95.03 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----CCCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~----~~~~D~v~~ 136 (291)
.+.+|||+-|=+|.++.+.+... ..+|+.||.|..+++.+++|+..+++ ++++++..|+.+... .++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999999887651 34899999999999999999999987 479999999987421 278999999
Q ss_pred cccccc------cccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEH------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~------~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.++-.. ..++..++..+.++|+|||.+++.+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 886321 146788999999999999998776553
No 177
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.07 E-value=2.4e-09 Score=89.04 Aligned_cols=96 Identities=17% Similarity=0.303 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~l~ 141 (291)
...++||||+|.|..+..++..+ .+|++.|.|+.|. .+.++.|. +++ |..++.. +.+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr----~rL~~kg~---~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMR----WRLSKKGF---TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHH----HHHHhCCC---eEE--ehhhhhccCCceEEEeehhhhh
Confidence 45689999999999999999874 5899999999975 44444554 222 2223322 26899999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...++..+|+.+++.|+|+|++++...-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999887653
No 178
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.06 E-value=1.9e-09 Score=91.54 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=95.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCEEEEEcCCHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~p-----~~~v~~vD~s~~~~~~a~~ 105 (291)
.+|. .+..++......+..++..... ...+|+-.||++|. ++..+.+..+ ..+|+|+|+|..+++.|+.
T Consensus 70 ~FFR-~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 70 EFFR-DPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred hhcc-CcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4444 4456666666666666544332 47899999999995 5555666554 4799999999999999975
Q ss_pred HHHH-----h----------------C-------C-CCeEEEEccccCCc-cCCCccEEEEccccccc--ccHHHHHHHH
Q 022810 106 QCRV-----L----------------E-------L-QNVEIIVADISTFE-MEASYDRIYSIEMFEHM--KNYQNLLKKI 153 (291)
Q Consensus 106 ~~~~-----~----------------~-------~-~~i~~~~~d~~~~~-~~~~~D~v~~~~~l~~~--~~~~~~l~~~ 153 (291)
-.-. . + + +.|.|...|+.+.. ..+.||+|+|.+++.++ +...++++++
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f 227 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRF 227 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHH
Confidence 2100 0 1 1 34788888888766 55889999999999998 4567899999
Q ss_pred HhccccCeeEEEE
Q 022810 154 SKWMKEDTLLFVH 166 (291)
Q Consensus 154 ~~~L~pgG~l~i~ 166 (291)
+..|+|||+|++-
T Consensus 228 ~~~L~~gG~LflG 240 (268)
T COG1352 228 ADSLKPGGLLFLG 240 (268)
T ss_pred HHHhCCCCEEEEc
Confidence 9999999999984
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=7e-10 Score=90.46 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----C-----------------------
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----Q----------------------- 113 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-----~----------------------- 113 (291)
..+..+|||||.+|.++..+++.+....+.|+|+++..|..|+++++..-. .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 457789999999999999999998556799999999999999987643210 0
Q ss_pred -------CeEEEEc-------cccCCccCCCccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEE
Q 022810 114 -------NVEIIVA-------DISTFEMEASYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 114 -------~i~~~~~-------d~~~~~~~~~~D~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.+... |+.+. ....||+|+|..+--++ .....+++++.++|.|||+|+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111111 11111 11579999998765444 45788999999999999999884
No 180
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=96.18 Aligned_cols=158 Identities=21% Similarity=0.306 Sum_probs=121.7
Q ss_pred hHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCC
Q 022810 9 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 88 (291)
Q Consensus 9 ~~~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~ 88 (291)
..+..+|+...++|...|+..++.+ .+.+. ........+.-...+-.....++..++|+|||.|....+++.. ..+
T Consensus 59 e~~~~~y~~~~dl~~~~w~~~~h~~--~~~e~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~~~ 134 (364)
T KOG1269|consen 59 EQIAKYYNNSTDLYERNWGQSFHFG--RIPEG-NSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-KKA 134 (364)
T ss_pred hHHHHHhcccchhhhhhhccchhcc--Cccch-hHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh-ccC
Confidence 4577899999999999999888763 22211 1111111111111222345667889999999999999999865 378
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 89 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.++|+|.++..+..+........++ +..++.+|+-..+++ +.||.+.+..+.+|.++...+++++.++++|||+++..
T Consensus 135 ~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 135 GVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999888888777773 455688888887777 89999999999999999999999999999999999886
Q ss_pred eecc
Q 022810 167 HFCH 170 (291)
Q Consensus 167 ~~~~ 170 (291)
....
T Consensus 215 e~i~ 218 (364)
T KOG1269|consen 215 EWIK 218 (364)
T ss_pred HHHH
Confidence 6654
No 181
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=2.9e-09 Score=87.17 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=87.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC-ccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~-~D~v~~~~~l~~ 142 (291)
+.+++|||+|.|..++.++-.+|..+|+.+|....-+...+....+.+++|++++++.++++..... ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 6899999999999999999888999999999999999999999999999899999999999875444 999999865
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+...+.+-+...+++||.+++
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchh
Confidence 3567788889999999998654
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.02 E-value=4.7e-09 Score=89.53 Aligned_cols=99 Identities=18% Similarity=0.340 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..++++. .+++++|+++.+++.+++++.. .++++++.+|+...+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 3556777787888889999999999999999999984 5799999999999999877643 34799999999887654
Q ss_pred CCcc---EEEEcccccccccHHHHHHHHHh
Q 022810 129 ASYD---RIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 129 ~~~D---~v~~~~~l~~~~~~~~~l~~~~~ 155 (291)
.+| +|+++.+++ + ...++.++..
T Consensus 91 -~~d~~~~vvsNlPy~-i--~~~il~~ll~ 116 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYN-I--SSPLIFKLLE 116 (253)
T ss_pred -HcCCcceEEEcCChh-h--HHHHHHHHhc
Confidence 466 888887764 2 2344444443
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.02 E-value=2.9e-09 Score=82.09 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=110.5
Q ss_pred HHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCE
Q 022810 11 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCK 89 (291)
Q Consensus 11 ~~~~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~ 89 (291)
...-+|..-.|++.|+.......+ .-. ...-..+.|.+.++...|..|||+|.|+|-++..+.++. +...
T Consensus 5 ~~~~f~~e~~F~k~wi~~PrtVGa-I~P--------sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~ 75 (194)
T COG3963 5 LARKFDEEISFFKGWIDNPRTVGA-ILP--------SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPES 75 (194)
T ss_pred hhhhHHHHHHHHHHHhcCCceeee-ecC--------CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccc
Confidence 345566677899999887665532 111 113344566677788889999999999999999998873 4568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c---C-CCccEEEEcccccccc--cHHHHHHHHHhccccCe
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M---E-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDT 161 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~---~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG 161 (291)
++++|.|++......+.. +.+.++.+|+.++. . . ..||.|+|.-++-.++ ...++++.+...|.+||
T Consensus 76 L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg 150 (194)
T COG3963 76 LTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGG 150 (194)
T ss_pred eEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999987776654 24668899988865 1 2 6799999998887774 34679999999999999
Q ss_pred eEEEEeeccC
Q 022810 162 LLFVHHFCHK 171 (291)
Q Consensus 162 ~l~i~~~~~~ 171 (291)
.++-.+.++-
T Consensus 151 ~lvqftYgp~ 160 (194)
T COG3963 151 PLVQFTYGPL 160 (194)
T ss_pred eEEEEEecCC
Confidence 9888777643
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7.2e-09 Score=81.01 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
..-+||||||+|..+..+++.. |+..+.++|+|+.+++..++.++.++. ++..++.|+..-..+++.|+++.++++--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcCc
Confidence 6789999999999999998864 667899999999999999998888877 78999999987554589999999886522
Q ss_pred cc---------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 143 MK---------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 143 ~~---------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
-+ -.+.++..+-.+|.|.|++++.....
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 11 14567888889999999999876543
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.01 E-value=3e-09 Score=99.12 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHHHcCC-------CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe
Q 022810 43 TLEDAEKAMLELYCERSRL-------EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i 115 (291)
++.+.|.+.++.....+.+ ..+..+||||||.|.++..+|..+|...++|+|+....+..+.+.+...+++|+
T Consensus 320 ~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 320 SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 5666776666555433322 346689999999999999999999999999999999999999988888888899
Q ss_pred EEEEccccCCc--cC-CCccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 116 EIIVADISTFE--ME-ASYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 116 ~~~~~d~~~~~--~~-~~~D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+++.|+..+. .+ +++|.|+.+++=-|.+. .+.+++.+.+.|+|||.+.+.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 99988875432 23 78999999887655532 36799999999999999988653
No 186
>PRK04148 hypothetical protein; Provisional
Probab=99.01 E-value=1.2e-08 Score=77.20 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~ 129 (291)
+.+.+.+...++.+|||||||.|. ++..|++. |.+|+++|+++..++.++++ .+.++.+|+.+.... +
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHh
Confidence 344555555567899999999996 88888876 89999999999987776553 367899999987666 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
.+|+|.+..+- ++....+.++.+. -|.-++|...+.+.
T Consensus 77 ~a~liysirpp---~el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 77 NAKLIYSIRPP---RDLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred cCCEEEEeCCC---HHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 89999987543 3334444444442 35567776554443
No 187
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.01 E-value=1.6e-08 Score=85.22 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCcc----CCCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~----~~~~D~v 134 (291)
..+.+||||.||.|..........|. .+|...|.|+..++..++.+++.|+.++ +|.++|+.+... ...++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45779999999999998888888876 6899999999999999999999999765 999999987421 1457999
Q ss_pred EEccccccccc---HHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.++.++.++| ....+..+.+++.|||+++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999977 455788899999999998774
No 188
>PLN02823 spermine synthase
Probab=98.98 E-value=3.5e-09 Score=93.22 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~~~D~v 134 (291)
.+.+.+||.||+|.|..+..+.+..+..++++||+++.+++.+++.+...+ .++++++.+|...+... ++||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 345679999999999999999876556789999999999999998875431 25799999999885432 789999
Q ss_pred EEcccccc--c-c---cHHHHHH-HHHhccccCeeEEEEe
Q 022810 135 YSIEMFEH--M-K---NYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~--~-~---~~~~~l~-~~~~~L~pgG~l~i~~ 167 (291)
++...-.. . . -..++++ .+++.|+|||++++..
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99742110 0 0 1356887 8999999999988754
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.96 E-value=1.2e-08 Score=93.64 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=90.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~~ 136 (291)
+..++.+|||++||.|.=+.++++... ...++++|+++..++.+++++...|+.++.+...|...+. .+..||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 667899999999999999999998763 3589999999999999999999999988999999987653 2367999997
Q ss_pred ccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 137 IEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~------~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..+-... + -..++|..+.+.|||||+|+-++.+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 6543211 1 13668999999999999998877653
No 190
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.95 E-value=5.4e-09 Score=89.87 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCcch----HHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHH------------------HH-----hC
Q 022810 63 DGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC------------------RV-----LE 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~----~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~------------------~~-----~~ 111 (291)
+..+|+..||.+|. ++..+.+..+ ..+|+|+|+|+.+++.|++-. .. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999995 3444444322 368999999999999998741 00 01
Q ss_pred -------C-CCeEEEEccccCCcc--CCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEE
Q 022810 112 -------L-QNVEIIVADISTFEM--EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 112 -------~-~~i~~~~~d~~~~~~--~~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+ +.|+|...|+.+.+. .+.||+|+|.+++.|+ +....+++++.+.|+|||+|++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1 358899999987543 3789999999999998 45788999999999999998774
No 191
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.94 E-value=2.4e-08 Score=79.57 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=89.4
Q ss_pred HHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--c
Q 022810 53 ELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--M 127 (291)
Q Consensus 53 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~ 127 (291)
+.++..+.. -.+.++||+-+|+|.++...+++. ..+++.||.+...+..+++|.+..+. .+.+++..|+.... .
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 344454443 478999999999999999999985 56899999999999999999999885 47889999988542 2
Q ss_pred C--CCccEEEEccccccc-ccHHHHHHH--HHhccccCeeEEEEeecc
Q 022810 128 E--ASYDRIYSIEMFEHM-KNYQNLLKK--ISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 ~--~~~D~v~~~~~l~~~-~~~~~~l~~--~~~~L~pgG~l~i~~~~~ 170 (291)
. ++||+|+..++++.- -+....+.. -..+|+|+|.+++.....
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2 359999999999721 222233333 357899999999976544
No 192
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.93 E-value=5.3e-09 Score=91.99 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVA 120 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------~p~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~ 120 (291)
...+.++..+...++.+|||.+||+|.+...+.+. .+..+++|+|+++.++..++.++.-.+. .+..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44455666667778889999999999999888763 2578999999999999999888766665 23468888
Q ss_pred cccCCccC---CCccEEEEccccccc--c-------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 121 DISTFEME---ASYDRIYSIEMFEHM--K-------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 121 d~~~~~~~---~~~D~v~~~~~l~~~--~-------------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|....+.. ..||+|++++++... . ....++..+.+.|++||++.+..|..
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 87654332 589999999987543 0 01258899999999999988877653
No 193
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.8e-09 Score=80.17 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
..|+..+-.-.+.-.|++++|+|||.|.++...+. +....|.|+|+++++++.+.+|+.+..+ ++.+.++|+.+..+.
T Consensus 34 asM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~ 111 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELK 111 (185)
T ss_pred HHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhcc
Confidence 34444454555656799999999999999965553 3346799999999999999999998877 789999999998776
Q ss_pred -CCccEEEEccccccc
Q 022810 129 -ASYDRIYSIEMFEHM 143 (291)
Q Consensus 129 -~~~D~v~~~~~l~~~ 143 (291)
+.||.++.++++..-
T Consensus 112 ~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 112 GGIFDTAVINPPFGTK 127 (185)
T ss_pred CCeEeeEEecCCCCcc
Confidence 889999999988544
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=9.3e-09 Score=82.27 Aligned_cols=110 Identities=25% Similarity=0.253 Sum_probs=85.8
Q ss_pred HHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhC--------C--CCeE
Q 022810 51 MLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE--------L--QNVE 116 (291)
Q Consensus 51 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~--------~--~~i~ 116 (291)
+...+++.+. +.||.+.||+|+|+|.++..++... ++...+|||.-++.++.+++++.+.- + .++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3444455554 6799999999999999999888653 45556999999999999999887543 1 3588
Q ss_pred EEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 117 IIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 117 ~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.+|......+ .+||.|.+-... .+..+++...|+|||.+++-
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 999999887666 899999998543 44566777889999998884
No 195
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.91 E-value=5.2e-09 Score=84.24 Aligned_cols=101 Identities=16% Similarity=0.263 Sum_probs=65.9
Q ss_pred HHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
++.+++.+... ++..|-|+|||.+.++..+.+ +.+|...|+.+. +-.++.+|+...|.+ +
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccCcCCCC
Confidence 45566655543 457899999999999866542 468999998653 223678999999888 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+.|++|+..+|.. .+...++.++.|+|||||.|.|.....+
T Consensus 122 svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 122 SVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp -EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred ceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 9999999877744 4789999999999999999999877543
No 196
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.90 E-value=1.9e-08 Score=89.81 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
+.+|||+.||+|..++.++.+.++ .+|+++|+++.+++.+++|++.++++++.++++|+...... .+||+|...+ +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 468999999999999999987533 58999999999999999999998887789999999876433 6799999976 4
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
..+..++..+.+.+++||.++++..+
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEecc
Confidence 23457899999999999999997433
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.90 E-value=1.8e-08 Score=86.37 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~~~D~v~ 135 (291)
+...+||-||.|.|..++.+.+..+-.+++.||+++..++.+++.+.... .++++++..|..++... .+||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 33469999999999999999988766899999999999999999887654 35899999999886543 5799999
Q ss_pred Ecccccccc----cHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+...=..-+ ....+++.+++.|+++|+++...
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 876433101 23789999999999999998873
No 198
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.89 E-value=2.5e-08 Score=88.89 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022810 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~ 124 (291)
......+++.+++.++..++ +|||+-||.|.++..+++. ..+|+|||.++.+++.|+++++.++++|++|+.+++++
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 44556788888888887766 8999999999999999987 67999999999999999999999999999999987765
Q ss_pred Ccc----------------C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 125 FEM----------------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 ~~~----------------~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.. . ..+|+|+..++=..+. ..+++.+.+ +.-+++++
T Consensus 256 ~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~~~---~~~ivYvS 309 (352)
T PF05958_consen 256 FAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKVIELIKK---LKRIVYVS 309 (352)
T ss_dssp CCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHHHHHHHH---SSEEEEEE
T ss_pred hhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHHHHHHhc---CCeEEEEE
Confidence 321 1 2589999988766554 234444433 34455554
No 199
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=2.6e-09 Score=86.49 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
....++|||||.|....++.... -.+++-+|.|..|++.++.. ...++ .+....+|-+.+++. +++|+|+++.++|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 45689999999999999998874 45799999999998877642 22333 456677888888777 8999999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
++.+.+..+.+++..|||+|.++-+..+-.+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 9999999999999999999998887665544
No 200
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.86 E-value=5.8e-09 Score=81.77 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=56.6
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CC-ccEEEEcccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---AS-YDRIYSIEMF 140 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~---~~-~D~v~~~~~l 140 (291)
.|+|+.||.|..++.+|+. ..+|++||+++..++.|+.|++..|+ ++|.++++|+.+.... .. +|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6999999999999999988 56999999999999999999999997 5899999999886433 12 8999998864
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.3e-08 Score=84.03 Aligned_cols=89 Identities=19% Similarity=0.376 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.....++..|||||+|.|.++..|+++ +.+|+++|+++.+++..++... ..++++++.+|+.....+
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 345778888888888999999999999999999998 7889999999999998888765 234899999999998877
Q ss_pred C--CccEEEEccccc
Q 022810 129 A--SYDRIYSIEMFE 141 (291)
Q Consensus 129 ~--~~D~v~~~~~l~ 141 (291)
. .++.|++|.+.+
T Consensus 92 ~l~~~~~vVaNlPY~ 106 (259)
T COG0030 92 SLAQPYKVVANLPYN 106 (259)
T ss_pred hhcCCCEEEEcCCCc
Confidence 4 789999998774
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.85 E-value=1.3e-08 Score=86.19 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--C-CccE
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--A-SYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~~~i~~~~~d~~~~~~~--~-~~D~ 133 (291)
.+.+.+||-||.|.|..+..+.+..+..++++||+++..++.+++.+.... -++++++.+|...+... + +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 346789999999999999999876445799999999999999999776532 24899999999875433 5 8999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+....-...+ -..++++.+++.|+|||++++...++
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 99865432111 13689999999999999999876443
No 203
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=5.1e-08 Score=85.80 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------C-------E
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------C-------K 89 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--------------------------------~-------~ 89 (291)
..+...++...+..++..++|.-||+|++++..+...++ + .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 455666777778888889999999999999998877421 1 3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc-c-------cHHHHHHHHHhcccc
Q 022810 90 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM-K-------NYQNLLKKISKWMKE 159 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~-~-------~~~~~l~~~~~~L~p 159 (291)
++|+|+++.+++.|+.|+...|+ +.|+|.++|+..+..+ +.+|+||||++..-- . -+..+.+.+++.++-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 77999999999999999999999 5699999999998877 899999999987322 1 133455556666666
Q ss_pred CeeEEEEee
Q 022810 160 DTLLFVHHF 168 (291)
Q Consensus 160 gG~l~i~~~ 168 (291)
-+..++.+.
T Consensus 337 ws~~v~tt~ 345 (381)
T COG0116 337 WSRYVFTTS 345 (381)
T ss_pred CceEEEEcc
Confidence 677766543
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.84 E-value=2e-08 Score=83.44 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~ 128 (291)
..++.++++.+++++..|||+|.|||.++..+.+. +.+|+++|+++.|+....++.+.... .+.+++.+|+...+.
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 45677888899999999999999999999999998 89999999999999999998876655 469999999988654
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
..||.++++.+..
T Consensus 122 P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQ 134 (315)
T ss_pred cccceeeccCCcc
Confidence 3689999987664
No 205
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=2.1e-08 Score=87.66 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
.+|.+|||.-+|.|.+++.++... ...|+++|+||.+++.+++|++.+++.+ +..+++|..+.... ..+|-|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 459999999999999999999873 2349999999999999999999999954 89999999998776 88999999865
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
- +...++..+.+.+++||++.+....++..
T Consensus 266 ~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 3 55678888889999999998877766543
No 206
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.3e-08 Score=80.54 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=94.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~- 128 (291)
+..++..+.+.||.+|||-|+|+|.++.++++.. |..+++.+|......+.|++.+++.++ +++++.+-|+...-+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5566777889999999999999999999999874 678999999999999999999999999 5899999999875443
Q ss_pred --CCccEEEEcccccccccHHHHHHHHHhccccCe-eEEEEeecc
Q 022810 129 --ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHHFCH 170 (291)
Q Consensus 129 --~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG-~l~i~~~~~ 170 (291)
..+|.|+.. ++.+..++..+.++||.+| +++-..|+.
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 578888774 5667778888888999877 555545544
No 207
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.82 E-value=2e-08 Score=83.68 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---
Q 022810 50 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST--- 124 (291)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~--- 124 (291)
..+..+++..++ .++.+|||+|||+|.++..+++.. ..+|+++|+++.++... .+.. .++ .+...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~---l~~~--~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEK---LRQD--ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHH---HhcC--CCeeEeecCCcccCCH
Confidence 445666666654 467899999999999999999872 46899999999887651 1111 122 223334432
Q ss_pred --CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 125 --FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 --~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
...+ ..+|+++++. ...+..+.+.|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEE
Confidence 2212 3556555543 2358889999999 76544
No 208
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.81 E-value=1.8e-08 Score=86.93 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
.+++.+++.+...++..++|.+||.|.++..+++..+ ..+|+|+|.++.+++.+++++.. .++++++++|+.++...
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 4667888888888889999999999999999999874 58999999999999999988765 45899999999876321
Q ss_pred --C---CccEEEEcccc
Q 022810 129 --A---SYDRIYSIEMF 140 (291)
Q Consensus 129 --~---~~D~v~~~~~l 140 (291)
. ++|.|++..-.
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 2 79999987643
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.80 E-value=5.6e-08 Score=79.67 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------HhCC--CCeEEEE
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL--QNVEIIV 119 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~-------~~~~--~~i~~~~ 119 (291)
...+..+++.+++.++...+|||||.|......+...+-.+++|||+.+...+.|+.... ..+. .++.+..
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 345666778888999999999999999998888876644469999999998887765433 2233 3688889
Q ss_pred ccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 120 ADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 120 ~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+|+.+.... ...|+|++++... -++....+.+....||+|.+++-
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 998764321 4579999987652 24555666777778888887653
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.79 E-value=9.9e-08 Score=92.52 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC----C-------------------------------------
Q 022810 49 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY----S------------------------------------- 86 (291)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~----p------------------------------------- 86 (291)
..+...++...+. .++..++|.+||+|++.+..+... |
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3445556666665 567899999999999998887531 1
Q ss_pred -CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC---CCccEEEEccccccc----ccHHHHHHHHHhcc
Q 022810 87 -NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKISKWM 157 (291)
Q Consensus 87 -~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L 157 (291)
..+++|+|+++.+++.|+.|+...|+. .+.+.++|+.++..+ +++|+|++|+++..- .+...+.+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 136999999999999999999999984 589999999887543 469999999987433 23344555554444
Q ss_pred c---cCeeEEEEeecc
Q 022810 158 K---EDTLLFVHHFCH 170 (291)
Q Consensus 158 ~---pgG~l~i~~~~~ 170 (291)
+ +|+.+++.+...
T Consensus 335 k~~~~g~~~~llt~~~ 350 (702)
T PRK11783 335 KQQFGGWNAALFSSSP 350 (702)
T ss_pred HHhCCCCeEEEEeCCH
Confidence 4 888887766543
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.7e-07 Score=82.31 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=92.8
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CC
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----AS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p--~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 130 (291)
..++..+|.+|||++++.|+=+.++++..+ +..|+++|.++.-+...+++++..|+.++..+..|....... ++
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 456788999999999999999999998864 356799999999999999999999998888888887754322 35
Q ss_pred ccEEEEccccccc------cc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022810 131 YDRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~v~~~~~l~~~------~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
||.|++..+-... ++ +.++|..+.+.|||||.|+.++.+.
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 9999987643221 11 4679999999999999999887754
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.74 E-value=3.7e-08 Score=81.30 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=76.3
Q ss_pred HHHHHHHcCCC-CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022810 52 LELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~ 129 (291)
++.+++.+... ....|-|+|||.+.++. .. ...|+.+|+.+. +-+++.+|+.+.+.+ +
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---------------CCceeeccccCCcCccC
Confidence 45556655443 45678899999988776 22 457999998543 456788999998887 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+.|++++..++. ..+...++.++.|+|+|||.++|.....
T Consensus 228 svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 228 SVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred cccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh
Confidence 999999877663 3588999999999999999999987654
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.73 E-value=8.8e-08 Score=81.22 Aligned_cols=101 Identities=11% Similarity=0.006 Sum_probs=77.7
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCccCCCccEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+..+.+.+||=||.|.|..++.+.+. | .+|+.||+++.+++.+++.+... +. ++++++.. +.+. ..++||+|
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVI 143 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLI 143 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEE
Confidence 34567899999999999999999976 4 49999999999999999855432 12 46777652 2211 12689999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
++... ....+++.+++.|+|||+++.+.-
T Consensus 144 IvDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQE-----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCC-----CChHHHHHHHHhcCCCcEEEECCC
Confidence 99854 236888999999999999988644
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=3.8e-07 Score=74.39 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE- 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~- 126 (291)
..+..+++.+ .+.++||||.=+|..+..+|...| +.+|+++|+++...+.+.+..+..|. .+|+++++++.+..
T Consensus 63 ~fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 3445555443 477999999999999999998875 57999999999999999999999988 47999999887632
Q ss_pred -----c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 -----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 -----~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. .++||+++...- -.++...+.++.+++|+||++++..
T Consensus 140 ~l~~~~~~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDAD---KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEEccc---hHHHHHHHHHHHhhcccccEEEEec
Confidence 1 278999998642 2455688999999999999998854
No 215
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.67 E-value=2e-08 Score=81.67 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=83.2
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~~---~~~ 131 (291)
.+..+.+.+|||-+.|-|..++..+++ |+ +|+.++.++..++.|.-|==..++ .+++++.+|+.+.... ++|
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 345567999999999999999999988 66 999999999988877643222222 2579999999876433 789
Q ss_pred cEEEEcccccccc---cHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMK---NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+-.++-.... -..++.+++.++|||||.++--+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 9999877543331 24679999999999999986544
No 216
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.67 E-value=3.2e-07 Score=77.34 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=92.3
Q ss_pred hHHHHHhhCCCCCcccc---------ccCCCCCCHHHHHHHHHHHHHHHcCCC-CCCEEEEEcCCc--chHHHHHHHH-C
Q 022810 19 TSFFKLVLGKYFKYSCC---------YFSDASKTLEDAEKAMLELYCERSRLE-DGHTVLDVGCGW--GSLSLYIAQK-Y 85 (291)
Q Consensus 19 ~~~y~~~~~~~~~y~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~~-~ 85 (291)
+..|+.++|.+-+|... .+. ....+....+..+...++.+.-. .-...||||||. -.+...+++. .
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P-~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~ 93 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAP-EIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA 93 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHST-THHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC
Confidence 67899999987777331 000 11223344445555555554444 446899999993 3456666554 6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C---CCcc-----EEEEcccccccc---cHHHHH
Q 022810 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E---ASYD-----RIYSIEMFEHMK---NYQNLL 150 (291)
Q Consensus 86 p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~---~~~D-----~v~~~~~l~~~~---~~~~~l 150 (291)
|.++|+.||.++-.+..++..+....-....++++|+.+... + +-+| .|++..++|+++ ++..++
T Consensus 94 P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv 173 (267)
T PF04672_consen 94 PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIV 173 (267)
T ss_dssp TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHH
T ss_pred CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHH
Confidence 899999999999999999888766542238899999987421 1 2333 577888999984 588999
Q ss_pred HHHHhccccCeeEEEEeeccCC
Q 022810 151 KKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 151 ~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+.++..|.||++|.++..+...
T Consensus 174 ~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 174 ARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp HHHHCCS-TT-EEEEEEEB-TT
T ss_pred HHHHHhCCCCceEEEEecCCCC
Confidence 9999999999999998887654
No 217
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=9.7e-08 Score=86.14 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=98.7
Q ss_pred HHHHHhhCCCCCcccc-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHH
Q 022810 20 SFFKLVLGKYFKYSCC-YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT 98 (291)
Q Consensus 20 ~~y~~~~~~~~~y~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~ 98 (291)
-.++.+++-++.+|.+ +|. ......+.+...+-++++++++..+||+.||+|.++..+++. -.+|+||++++.
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ----~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 343 YITESLLGLTFRISPGAFFQ----TNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPD 416 (534)
T ss_pred EEEeecCCeEEEECCchhhc----cCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChh
Confidence 3445555656666664 443 223333445556667788889999999999999999999986 679999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEccccCCccC------CCcc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 99 QKEFIEEQCRVLELQNVEIIVADISTFEME------ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 99 ~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~------~~~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++.|+.++..+|+.|.+|+++-+++.-.. .+=+ +++...+=..+ ...+++.+.+.-++--.+++++-
T Consensus 417 aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl--h~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 417 AVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL--HMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred hcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcccc--cHHHHHHHHhccCccceEEEEcC
Confidence 999999999999999999999977664322 2334 44444433211 24566666665556666666543
No 218
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=3.5e-07 Score=79.25 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=79.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
-...+|+|.|.|..+..+..++| ++-+++.+...+..+..... . .|+.+.+|+.+. .| +-|+|++.+++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CC-CcCeEEEEeecccC
Confidence 36889999999999999999877 46777777776666555543 2 478889999886 33 34799999999999
Q ss_pred --ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 144 --KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 144 --~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
++..++|+++++.|+|||.+++.....
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 457789999999999999999877643
No 219
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=2.3e-07 Score=73.69 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=87.0
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022810 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
+...-..-.+++|||+|+|+|..++..++.. ...|+..|+.+.....++-|++.+++ ++.+...|.-. .+..+|++
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~ 146 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLL 146 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEE
Confidence 3333344578999999999999999988773 45799999999999999999998887 78999998877 34689999
Q ss_pred EEcccccccccHHHHHHHHHhcccc-CeeEEEEeeccCCc
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKE-DTLLFVHHFCHKTF 173 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~ 173 (291)
++..+++.-+....++. +...|+. |-.+++.++.+...
T Consensus 147 LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 147 LAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred EeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 99998877666677777 4444544 44566666655433
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.59 E-value=1.8e-06 Score=75.57 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=94.3
Q ss_pred hhcC-CChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----CC
Q 022810 13 QHYE-LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SN 87 (291)
Q Consensus 13 ~~yd-~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----p~ 87 (291)
-.|| .+.+.|+.+......| .... =.+........+++.+ .++..|+|+|||.|.-+..|.+.. ..
T Consensus 34 ~~YD~~Gs~LFe~It~lpEYY-----ptr~--E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~ 104 (319)
T TIGR03439 34 LLYDDEGLKLFEEITYSPEYY-----LTND--EIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKS 104 (319)
T ss_pred hhhcchHHHHHHHHHcCCccC-----ChHH--HHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCC
Confidence 4454 6677787776433323 2110 0111122233444433 467799999999999877766543 24
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCCeE--EEEccccCC----cc---CCCccEEEEcc-cccccc--cHHHHHHHHHh
Q 022810 88 CKITGICNSKTQKEFIEEQCRVLELQNVE--IIVADISTF----EM---EASYDRIYSIE-MFEHMK--NYQNLLKKISK 155 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~~i~--~~~~d~~~~----~~---~~~~D~v~~~~-~l~~~~--~~~~~l~~~~~ 155 (291)
..++++|+|..+++.+.+++.....+.+. -+++|+.+. +. .....+++..+ ++..++ ....+|+++++
T Consensus 105 ~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 105 VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 68999999999999999988744444444 488888653 11 13356666554 676663 34579999999
Q ss_pred -ccccCeeEEEEe
Q 022810 156 -WMKEDTLLFVHH 167 (291)
Q Consensus 156 -~L~pgG~l~i~~ 167 (291)
.|+|||.|++..
T Consensus 185 ~~l~~~d~lLiG~ 197 (319)
T TIGR03439 185 TALSPSDSFLIGL 197 (319)
T ss_pred hhCCCCCEEEEec
Confidence 999999988854
No 221
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.57 E-value=1e-06 Score=76.25 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=91.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~ 133 (291)
.+...++.+|||++++.|+=+.++++... ...++++|+++..+...+++++..|..++.....|....... ..||.
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 35677899999999999999999998874 579999999999999999999999998888888888776322 45999
Q ss_pred EEEccccccc------cc----------------HHHHHHHHHhcc----ccCeeEEEEeecc
Q 022810 134 IYSIEMFEHM------KN----------------YQNLLKKISKWM----KEDTLLFVHHFCH 170 (291)
Q Consensus 134 v~~~~~l~~~------~~----------------~~~~l~~~~~~L----~pgG~l~i~~~~~ 170 (291)
|+...+-... ++ ..++|+.+.+.+ ||||+++.++.+.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 9986643211 11 466999999999 9999998877654
No 222
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.56 E-value=1.2e-06 Score=75.47 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~ 127 (291)
+.+..+-..+....+.+|||+|||+|..+-.+...++ -.+++++|.|+.+++.++..+...... ...+......+...
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 3444554455445677999999999998877777665 347999999999999998877654321 11111111111111
Q ss_pred CCCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 128 EASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
-...|+|++.++|..+++ ...+++.+.+.+++ .|++..++.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 134599999999988865 33466666555555 7777776543
No 223
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.56 E-value=4.9e-08 Score=88.10 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCC----CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc---CCHHHHHHHHHHHHHhCCCCeEEEEcc
Q 022810 49 KAMLELYCERSRL----EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC---NSKTQKEFIEEQCRVLELQNVEIIVAD 121 (291)
Q Consensus 49 ~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD---~s~~~~~~a~~~~~~~~~~~i~~~~~d 121 (291)
...++.+.+.+.. ..-..+||+|||+|.++.+|.++ +..+..+- ..+.+++.|. +.|++ ..+-..-
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfal----eRGvp-a~~~~~~ 171 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFAL----ERGVP-AMIGVLG 171 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhh----hcCcc-hhhhhhc
Confidence 3444444444433 22346899999999999999987 55444433 3334444443 34442 1111122
Q ss_pred ccCCccC-CCccEEEEccccccc-ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 122 ISTFEME-ASYDRIYSIEMFEHM-KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 122 ~~~~~~~-~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
...++++ +.||+|.|..++... ++-.-+|-++.|+|+|||+++++.+..
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 3456766 899999998876544 333558889999999999999876643
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.54 E-value=1.3e-07 Score=76.49 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=69.2
Q ss_pred HHHHHHHHcC-CC--CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 51 MLELYCERSR-LE--DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
++..+.+..+ +. ++.+|||+||++|+++..+.++. +..+|+|+|+.+. ....++.++++|+.+..
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhh
Confidence 4556666666 33 35899999999999999999885 4579999999876 11235666666654421
Q ss_pred ---------cC--CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 ---------ME--ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ---------~~--~~~D~v~~~~~l~~~-----------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.. .++|+|+|....... .-....+.-+.+.|+|||.+++..+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 489999998833221 11233455556789999998887654
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.52 E-value=1.3e-06 Score=82.30 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----c-cC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----E-ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-----~-~~ 128 (291)
...+|||.|||+|.+...++...+ ...++|+|+++..+..++.++...+.-.+.+...|.... . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999998887643 157899999999999999888766521344555553321 1 11
Q ss_pred CCccEEEEccccccccc----------------------------------------------HHHHH-HHHHhccccCe
Q 022810 129 ASYDRIYSIEMFEHMKN----------------------------------------------YQNLL-KKISKWMKEDT 161 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~----------------------------------------------~~~~l-~~~~~~L~pgG 161 (291)
+.||+|++|+++.-... +..++ +.+.+.|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 58999999998764310 01133 56788999999
Q ss_pred eEEEEeecc
Q 022810 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~i~~~~~ 170 (291)
++.+..|..
T Consensus 191 ~~~~I~P~s 199 (524)
T TIGR02987 191 YVSIISPAS 199 (524)
T ss_pred EEEEEEChH
Confidence 998877754
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.51 E-value=1.6e-07 Score=73.89 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=81.0
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc--
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH-- 142 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~-- 142 (291)
..+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+|..-.|..+++++.+|+.+..+ +..|+|+|-..=..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988876 67999999999999999999888888899999999999877 56799988542111
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+.....+..+...|+-++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 14456688888889998888654
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.46 E-value=4.9e-06 Score=64.40 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHH-----HCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CCeEEEEccccCCccCCCcc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQ-----KYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~-----~~p~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~i~~~~~d~~~~~~~~~~D 132 (291)
..+..+|+|+|||.|.++..++. . ++.+|++||.++..++.+.++.++.+ . .++.+..++..+.......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 35788999999999999999998 4 58899999999999999999988877 3 45777777766543345667
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++....-..+ .+.+++...+ |+-..++.
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEEE
Confidence 77775443322 2445555544 55554443
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.45 E-value=3e-06 Score=72.63 Aligned_cols=100 Identities=17% Similarity=0.292 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~ 128 (291)
...++.+++.+...++..|||||+|.|.++..+.+. +.+++++|+++..++..++... ..++++++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccH
Confidence 456778888888888999999999999999999988 5899999999999888887665 224899999999987655
Q ss_pred C----CccEEEEcccccccccHHHHHHHHHh
Q 022810 129 A----SYDRIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 129 ~----~~D~v~~~~~l~~~~~~~~~l~~~~~ 155 (291)
. ....|+++.+. ++. ..++.++..
T Consensus 92 ~~~~~~~~~vv~NlPy-~is--~~il~~ll~ 119 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NIS--SPILRKLLE 119 (262)
T ss_dssp GHCSSSEEEEEEEETG-TGH--HHHHHHHHH
T ss_pred HhhcCCceEEEEEecc-cch--HHHHHHHhh
Confidence 3 55688888776 332 456666655
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.41 E-value=5.3e-06 Score=67.76 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~ 131 (291)
+.+.+.+|.+||-+|..+|....+++... +...|++|+.|+.........+++. +||-.+..|+..... -+..
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--E
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccc
Confidence 34567899999999999999999998874 4679999999998877776666555 389999999986431 1689
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+|++.-. .-.+..-++.++...||+||.+++..-
T Consensus 145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 99998643 223334567778889999999988653
No 230
>PRK10742 putative methyltransferase; Provisional
Probab=98.40 E-value=1.9e-06 Score=71.97 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=74.5
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------C--C-CCeEEEEcc
Q 022810 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------E--L-QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~i~~~~~d 121 (291)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......+.++... + + .+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 5667777888887 9999999999999999988 889999999999999998888764 2 2 468999999
Q ss_pred ccCCccC--CCccEEEEccccccc
Q 022810 122 ISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~~--~~~D~v~~~~~l~~~ 143 (291)
..++... .+||+|++.+++.+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 8775432 579999999988664
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.38 E-value=8.8e-06 Score=63.28 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccCC--CccEEEEccccc
Q 022810 67 VLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEA--SYDRIYSIEMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~--~~~~~--~~D~v~~~~~l~ 141 (291)
++|+|||+|... .+....+. ..++++|+++.++..++......+...+.+...|... .+... .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 44443222 4899999999999885544433211116788888776 44443 799994444444
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
+.. ....+..+.+.|+|+|.+++.......
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 788999999999999999887776543
No 232
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.2e-07 Score=71.34 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccC
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---LQNVEIIVADIST 124 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~---~~~i~~~~~d~~~ 124 (291)
+.+...+++..+...+.+||++|.| +|..+..+|...|...|...|-++.++...++....+. ++++....-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 4444455554444567899999999 56666667777788899999999998887776554332 2233333333322
Q ss_pred Cc--cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 125 FE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 125 ~~--~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
-. .. ..||+|++...+..-+....+++.++..|+|.|..++..|
T Consensus 95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 21 12 5899999999886666678899999999999999777554
No 233
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.33 E-value=1e-05 Score=68.81 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---hC---------------------------
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LE--------------------------- 111 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~---~~--------------------------- 111 (291)
....+||--|||.|.++..++.+ |..+.|.|.|--|+-...-.+.. .+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34679999999999999999988 89999999999987554432211 00
Q ss_pred ----------CCCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeE
Q 022810 112 ----------LQNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 112 ----------~~~i~~~~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
..++....+|+.+.-.+ ++||+|+...-+...++....++.+.++|||||+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 02456666777664332 58999999988877788999999999999999954
No 234
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.33 E-value=1.3e-06 Score=73.67 Aligned_cols=106 Identities=24% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC---------------------------C-C
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------------L-Q 113 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~---------------------------~-~ 113 (291)
..+.++||||||+-..-..-+..+ ..+++..|.++..++..++.+++.+ + .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 357799999999854433323222 3479999999998887766443321 1 1
Q ss_pred Ce-EEEEccccCCccC-------CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 114 NV-EIIVADISTFEME-------ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 114 ~i-~~~~~d~~~~~~~-------~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.| .++.+|+.+.++- .+||+|++..+++.. +.+...++++.++|||||.|++...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 13 3777888774321 359999999988776 4467799999999999999998765
No 235
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.33 E-value=2.3e-06 Score=66.25 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=53.4
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~ 125 (291)
.+||+|||.|..+..+++..|..+++++|+++.+.+.++++++.++.+++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999999887779999999999999999999888876788888877653
No 236
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.31 E-value=2e-06 Score=69.91 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~~~~ 139 (291)
..++|||||=+..+...- .+-..|+.||+++. .-.+.+.|+.+.+.+ ++||+|.++.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 369999999765544432 23457999999874 233567888776543 78999999999
Q ss_pred ccccccHH---HHHHHHHhccccCee-----EEEEeeccC
Q 022810 140 FEHMKNYQ---NLLKKISKWMKEDTL-----LFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~---~~l~~~~~~L~pgG~-----l~i~~~~~~ 171 (291)
+.+++++. +.++++.+.|+|+|. |++..|.+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99998764 599999999999999 888877554
No 237
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.31 E-value=1.6e-05 Score=67.91 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCEEEEEcCCcchHHHH-HHHH-CCCCEEEEEcCCHHHHHHHHHHHH-HhCC-CCeEEEEccccCCccC-CCccEEEEcc
Q 022810 64 GHTVLDVGCGWGSLSLY-IAQK-YSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~-l~~~-~p~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
+.+|+=||||.=-++.. ++++ .++..|+++|+++.+++.+++... ..++ .+++|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 45999999997665544 4443 356789999999999999998877 3444 4799999999876655 7899998876
Q ss_pred ccc-ccccHHHHHHHHHhccccCeeEEEE
Q 022810 139 MFE-HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~-~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
... .-++..+++.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 543 2257889999999999999998885
No 238
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.31 E-value=7.5e-07 Score=71.97 Aligned_cols=99 Identities=12% Similarity=0.188 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-----CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-----ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-----~~~D~v~~ 136 (291)
....|+|.-||.|+.++.++.+ +..|++||+++..+..|+.|++-.|+ ++|+|+++|+.++... ..+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 3568999999999999999988 67999999999999999999999999 5899999999875422 34667777
Q ss_pred cccccccccHHHHHHHHHhccccCeeE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l 163 (291)
.++...-.-...-+-.+...++|.|.-
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~~~ 198 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMGTK 198 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhHHH
Confidence 776544444444555566666666543
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.21 E-value=9.5e-07 Score=64.79 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred EEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEcccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEMF 140 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~-~~~D~v~~~~~l 140 (291)
||||+..|..+..+++..+. .+++++|..+. .+.+++..++.++ ++++++.++..+.. .. +++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999988876532 37999999995 3334444444445 47999999987642 22 68999999763
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|..+.....++.+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222456678888999999999998864
No 240
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.20 E-value=1.3e-06 Score=69.90 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=94.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
.+.++||+|+|.|..+..++..+ .+|++.++|..|....++ .+. ++- -..++.+ ..-++|+|.|.+.+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y-nVl-~~~ew~~--t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY-NVL-TEIEWLQ--TDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC-cee-eehhhhh--cCceeehHHHHHHHHh
Confidence 45799999999999999998773 579999999998766543 333 211 1112221 1247999999999988
Q ss_pred cccHHHHHHHHHhcccc-CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCc
Q 022810 143 MKNYQNLLKKISKWMKE-DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKH 221 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (291)
.-++-.+++.++.+|+| +|.+++.-.-+- .++ .. ..++|.....+-+ .+..|..
T Consensus 182 c~~p~kLL~Di~~vl~psngrvivaLVLP~-~hY--VE----------~N~~g~~~rPdn~------------Le~~Gr~ 236 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIVALVLPY-MHY--VE----------TNTSGLPLRPDNL------------LENNGRS 236 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEEEEEecc-cce--ee----------cCCCCCcCCchHH------------HHhcCcc
Confidence 88899999999999999 898777544221 111 00 0122211111111 1233556
Q ss_pred HHHHHHHHHHHHHhcHHhHhhh
Q 022810 222 YAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 222 ~~~t~~~w~~~l~~~~~~~~~~ 243 (291)
|..-.....+.|...|+.+...
T Consensus 237 ~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 237 FEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred HHHHHHHHHHHHHhcCchhhhh
Confidence 6666667777788888887654
No 241
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.20 E-value=8.6e-06 Score=70.12 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=48.3
Q ss_pred CCEEEEEcCCcchH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEEccccCC-----ccC-CCccEE
Q 022810 64 GHTVLDVGCGWGSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIVADISTF-----EME-ASYDRI 134 (291)
Q Consensus 64 ~~~vLDiGcG~G~~-~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~i~~~~~d~~~~-----~~~-~~~D~v 134 (291)
..++||||||...+ .+..++.+ +.+++|.|+++..++.|++++..+ ++ ++|+++...-... ..+ +.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999997755 34444444 899999999999999999999998 77 4788876642221 111 689999
Q ss_pred EEcccccccc
Q 022810 135 YSIEMFEHMK 144 (291)
Q Consensus 135 ~~~~~l~~~~ 144 (291)
+|+++++.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999998663
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.19 E-value=1.5e-05 Score=69.45 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=66.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccc
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~ 139 (291)
..++.++|||||++|..+..+.++ +.+|++||..+- ...+... ++|.....|.....+ .+.+|.++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhhCC--CCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 358999999999999999999988 789999996552 1222222 378989998877665 478999999765
Q ss_pred ccccccHHHHHHHHHhccccC
Q 022810 140 FEHMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pg 160 (291)
..+..+.+-+.+.|..|
T Consensus 280 ----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ----cCHHHHHHHHHHHHhcC
Confidence 35667777777777555
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.18 E-value=2.3e-05 Score=68.10 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHH--HHhC---C--CCeEEEEccccCCccC--CCc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQC--RVLE---L--QNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~--~~~~---~--~~i~~~~~d~~~~~~~--~~~ 131 (291)
+...+||-+|.|.|.-++++.+ +| -.+++-||++|+|++.++.+. ++.+ . ++++++..|+.++... +.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4567999999999999999984 67 468999999999999999443 2221 1 4799999999887544 789
Q ss_pred cEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|.||....=..-+. ..++..-+++.|+++|.++++..++
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 99998653211111 2568888999999999999975543
No 244
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=2.1e-06 Score=72.25 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
..+..++|+|||.|..+. ..|.+.++|.|.+...+..+++. +. ....+|+..++.. .+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 357899999999987653 23678899999998866655431 23 5778999988877 89999999999
Q ss_pred cccccc---HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 140 FEHMKN---YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+||+.. ...+++++.+.|+|||..++..+...
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999943 46799999999999999888666543
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.16 E-value=1.4e-05 Score=69.27 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-- 127 (291)
.+++.+++.+...++..++|.-+|.|+++..+++..+..+|+|+|.++.+++.+++++...+ +++.+++++..++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHL 85 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHH
Confidence 46778888888888899999999999999999998766899999999999999999876543 479999999887531
Q ss_pred ---C-CCccEEEEcccc
Q 022810 128 ---E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ---~-~~~D~v~~~~~l 140 (291)
. .++|.|+.+.-+
T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305)
T ss_pred HhcCCCcccEEEEeccC
Confidence 2 468999887644
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.1e-05 Score=62.01 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=82.6
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----CCCcc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~~~~D 132 (291)
+.+++.++.+||=+|.-+|+...+++...+...+++|+.|+.........+.+. +|+-.+..|+..... -+..|
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhccccc
Confidence 345678999999999999999999998876678999999999988777777665 378889999987431 16789
Q ss_pred EEEEcccccccccHHH-HHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQN-LLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~-~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+..-+ -+++.+ +..++...||+||.+++..
T Consensus 148 viy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 148 VIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 8887522 144444 6667899999999877754
No 247
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.14 E-value=0.00016 Score=60.01 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v~~~~ 138 (291)
-.|++||-+|-.--. ++.++...+..+|+.+|+++..++..++.+++.|+ +|+.+..|+.+..++ ++||+++..+
T Consensus 43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEeCC
Confidence 458899999966443 33444444578999999999999999999999999 599999999884333 8999999988
Q ss_pred cccccccHHHHHHHHHhccccCe-eEEEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDT-LLFVH 166 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG-~l~i~ 166 (291)
+. .++....++.+....||..| ..++.
T Consensus 121 Py-T~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 121 PY-TPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -S-SHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred CC-CHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 75 55677889999999998766 44443
No 248
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.10 E-value=2.9e-05 Score=62.73 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEc
Q 022810 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVA 120 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~ 120 (291)
|.......++...+.+. .+|.+||++|-|-|.....+.+.- ..+=+.++..+..++..+ +.|. .|+....+
T Consensus 83 Mm~WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~-p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAP-PDEHWIIEAHPDVLKRMR----DWGWREKENVIILEG 156 (271)
T ss_pred hhhhhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcC-CcceEEEecCHHHHHHHH----hcccccccceEEEec
Confidence 33333444444444443 568899999999999988887664 455667899999665544 4444 47888888
Q ss_pred cccCCcc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 121 DISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 121 d~~~~~~---~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
-+++... .+.||-|+-..--++-++...+.+.+-++|||+|++-+
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred chHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 8777432 27799999876556678888999999999999998754
No 249
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.05 E-value=6.1e-05 Score=66.79 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=90.5
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEE
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v 134 (291)
+..++|.+|||.++-.|.=+.++|.... ...|++.|.+...+...+.++...|+++..+...|...++.. ++||.|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 4567999999999999998888887642 357999999999999999999999998888888898776522 589999
Q ss_pred EEcccccc--c----------c----------cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 135 YSIEMFEH--M----------K----------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~--~----------~----------~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
....+-.. + + -..++|..+.+++++||+|+-++.+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 98665433 1 0 14668888899999999999887764
No 250
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.04 E-value=1.8e-05 Score=63.31 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------CCCeEEEEccccCCccC----CCc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------LQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~i~~~~~d~~~~~~~----~~~ 131 (291)
....+.|||||-|.+...|+.++|..-+.|.++--..-++.++++...+ ..|+.+...+...+.+. ++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4467999999999999999999999999999999999999988887765 45677777776664322 222
Q ss_pred cEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022810 132 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+-.+...+--|... ...++.+..=+|++||.++..+-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222222222211 24577788888999999887543
No 251
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=9.2e-05 Score=60.15 Aligned_cols=108 Identities=21% Similarity=0.171 Sum_probs=75.7
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
++..+.++..+ .++.+|+|||+-.|+.+..++++. ++..|+++|+.|- ....++.++++|+.....
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHH
Confidence 34455555443 578999999999999999999886 2345999999774 123469999999987431
Q ss_pred -------C-CCccEEEEcccc--------ccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 128 -------E-ASYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 -------~-~~~D~v~~~~~l--------~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
. .++|+|+|...= .|. .-...++.-+..+|+|||.+++..+.
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 2 457999986532 111 11234566667899999999987663
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.00014 Score=62.13 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~- 127 (291)
.+++.+++.+...++...+|.--|.|+++..+.+++|. .+++|+|-++.+++.|++.....+ +++.+++.++.++..
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH
Confidence 56778888889999999999999999999999999864 569999999999999999887765 389999988766431
Q ss_pred ----C-CCccEEEEc
Q 022810 128 ----E-ASYDRIYSI 137 (291)
Q Consensus 128 ----~-~~~D~v~~~ 137 (291)
. .++|.|+..
T Consensus 89 l~~~~i~~vDGiL~D 103 (314)
T COG0275 89 LKELGIGKVDGILLD 103 (314)
T ss_pred HHhcCCCceeEEEEe
Confidence 1 466766653
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.98 E-value=8.3e-05 Score=61.07 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=67.9
Q ss_pred EEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022810 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~ 144 (291)
|.||||--|.+..+|.+.....+++++|+++..++.|+++....++ +++++..+|..+...+ +..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999985445899999999999999999999997 5799999997654333 44798888765321
Q ss_pred cHHHHHHHHHhccccCeeEEEE
Q 022810 145 NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-...++++....++....|+++
T Consensus 79 lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEe
Confidence 2345666665656555566554
No 254
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.89 E-value=0.00013 Score=60.88 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+..+|+|||||.=-++.......|+..++|+|++..+++.........+. +.++...|...-+.+...|+.+..=+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 457899999999988888887777788999999999999999999888877 6778888988776667899999877776
Q ss_pred ccc
Q 022810 142 HMK 144 (291)
Q Consensus 142 ~~~ 144 (291)
-++
T Consensus 183 ~le 185 (251)
T PF07091_consen 183 CLE 185 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00015 Score=59.81 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-
Q 022810 52 LELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~~~- 128 (291)
+...++...+ .++..+||+|+.||.++..+.++. ..+|+++|....++..-.+ .. ++ +.....|+..+...
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---~d--~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---ND--PRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---cC--CcEEEEecCChhhCCHHH
Confidence 3444444444 468899999999999999999884 5689999998877654322 11 24 44555677665433
Q ss_pred --CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 129 --ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 129 --~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+..|++++.-++. ....+|..+..+++|++-++.
T Consensus 141 ~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 141 FTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred cccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE
Confidence 5789999988774 447889999999999998655
No 256
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.80 E-value=7.6e-05 Score=59.42 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=76.1
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHH------HHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQK------EFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~------~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
.++...+++++.+|+|+=.|.|.++..++... |...|+++-+.+... ...+...++....|++.+..+...+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 34455678899999999999999999998764 445777765544311 11111222222345666666665555
Q ss_pred cCCCccEEEEccccccc-------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 MEASYDRIYSIEMFEHM-------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++..|+++.+...|.+ .....+.+.+.+.|||||++++.+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 44777888775544433 2356788899999999999988653
No 257
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00018 Score=65.49 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=97.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHH
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSRLED---GHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~----~p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
..|+.+....+..+.+....+.++..... ...|+-+|+|-|-+.....+. ....++++|+-+|.++-..+...
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n 415 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN 415 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc
Confidence 56777778888888888888888764432 456889999999876655432 23568999999999887776533
Q ss_pred HHhCCCCeEEEEccccCCccC-CCccEEEEcc--cccccccHHHHHHHHHhccccCeeEEE
Q 022810 108 RVLELQNVEIIVADISTFEME-ASYDRIYSIE--MFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 108 ~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~--~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+.-.++++++..|++.+..+ .+.|++++-. ++..-+-.++.|..+.+.|||+|+.+=
T Consensus 416 ~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 416 FECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 222225799999999999887 8899988732 333334457899999999999987543
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.62 E-value=0.00041 Score=52.93 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=58.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--C-CccEEEEcccccc-----c----ccHHHHHHHHHh
Q 022810 89 KITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--A-SYDRIYSIEMFEH-----M----KNYQNLLKKISK 155 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~--~-~~D~v~~~~~l~~-----~----~~~~~~l~~~~~ 155 (291)
+|+|+|+.+++++.+++++.+.+. ++++++..+=+.+..- . ++|+++.|.-.-- + ...-..++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 689999999999999999999988 4799999877665432 3 7999888753211 1 224568888899
Q ss_pred ccccCeeEEEEee
Q 022810 156 WMKEDTLLFVHHF 168 (291)
Q Consensus 156 ~L~pgG~l~i~~~ 168 (291)
.|+|||.+.+...
T Consensus 81 lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 81 LLKPGGIITIVVY 93 (140)
T ss_dssp HEEEEEEEEEEE-
T ss_pred hhccCCEEEEEEe
Confidence 9999999877643
No 259
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00055 Score=52.13 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~ 127 (291)
.+.++.+++.+...+..+.+|+|+|.|......++.. -...+|+++++-.+.+++-.+-..+. +..+|..-|+-....
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 4556667777777777799999999999999988873 36789999999999999888777777 468888888877654
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. .|..|+...+=.-++ .+-.++..-|..|..++..
T Consensus 137 ~-dy~~vviFgaes~m~---dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 137 R-DYRNVVIFGAESVMP---DLEDKLRTELPANTRVVAC 171 (199)
T ss_pred c-ccceEEEeehHHHHh---hhHHHHHhhCcCCCeEEEE
Confidence 3 344444433222222 3344555556666666553
No 260
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.58 E-value=0.00075 Score=56.64 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----C-CCeEEEEccccCCcc----CCC-c
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEIIVADISTFEM----EAS-Y 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~i~~~~~d~~~~~~----~~~-~ 131 (291)
...+||++|+|+|..++.++... +.+|+..|... .+...+.+...++ + ..+.+...++..... ... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35679999999998888887654 78999888744 3444444432222 1 145555555554321 144 8
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
|+|++..+++.......++.-+...|..+|++++...-+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999998888888889999999989887777665443
No 261
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00055 Score=55.85 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.+.++.||||--+.+..++.+..+...+++.|+++..++.|.+++.+.++ ++++..++|....-.. ..+|.|+..++=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 45669999999999999999998888999999999999999999999988 5799999998553323 579999887653
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.. -...++++-.+.|+.--.+++
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEE
Confidence 21 134556665665554334444
No 262
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00037 Score=60.51 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc----CCccCCCccEE
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS----TFEMEASYDRI 134 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~----~~~~~~~~D~v 134 (291)
......+|||+|.|.|.-+.++-..+|.. .++.++.|+..-+...............+...|+. .++....|++|
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence 33456789999999999888888788764 58888999886666555444333222222233332 23322567777
Q ss_pred EEccccccccc---HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+...-+-+... ....++.+..++.|||.++|..++.+
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 66554444422 34488899999999999999877643
No 263
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.56 E-value=0.0011 Score=61.88 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=100.1
Q ss_pred hcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC----CCE
Q 022810 14 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----NCK 89 (291)
Q Consensus 14 ~yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p----~~~ 89 (291)
..|...+.|+.+++....-. =....+-.+. ......+++.+...+..+|+|..||+|.+.....+... ...
T Consensus 142 ~~d~~G~~yE~ll~~fa~~~---~k~~GEfyTP--~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~ 216 (489)
T COG0286 142 DRDLFGDAYEYLLRKFAEAE---GKEAGEFYTP--REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIF 216 (489)
T ss_pred cccchhHHHHHHHHHHHHhc---CCCCCccCCh--HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhcccee
Confidence 45677788888775311110 0000111111 33445555556666777999999999998877766541 267
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----C-CCccEEEEccccccc-------------------
Q 022810 90 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----E-ASYDRIYSIEMFEHM------------------- 143 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~-----~-~~~D~v~~~~~l~~~------------------- 143 (291)
++|.|+++.....++.++--++++ ++....+|....+. . .+||+|++++++...
T Consensus 217 ~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
T COG0286 217 IYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYG 296 (489)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccC
Confidence 999999999999999999888875 35555665544321 2 679999999987400
Q ss_pred ------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 144 ------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 144 ------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.....++..+...|+|||+..+..+..
T Consensus 297 ~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 297 VFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 012678999999999999766655543
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.52 E-value=0.00053 Score=57.06 Aligned_cols=89 Identities=24% Similarity=0.407 Sum_probs=54.3
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhC-C-----CCeEEEEcc
Q 022810 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-L-----QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~---~~~~-~-----~~i~~~~~d 121 (291)
+.+++.++++++. +|||.-+|.|.-+..++.. |++|+++|-|+-.....+.-+ .... . .+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 4566667777664 8999999999999999976 889999999997665555332 2211 1 379999999
Q ss_pred ccCCcc--CCCccEEEEccccccc
Q 022810 122 ISTFEM--EASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~--~~~~D~v~~~~~l~~~ 143 (291)
..++.. ..+||+|+..+++.+-
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S----
T ss_pred HHHHHhhcCCCCCEEEECCCCCCc
Confidence 988532 2799999999998653
No 265
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00059 Score=61.99 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=81.3
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~ 143 (291)
.++|-+|||.-.+...+-+-. ...|+.+|+|+-.++.+...-. ....-+.+...|+....++ ++||+|+..+.++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 399999999998888887653 4579999999998887776543 2223588999999998888 999999999988777
Q ss_pred -cc---------HHHHHHHHHhccccCeeEEEEee
Q 022810 144 -KN---------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 144 -~~---------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+ ....+.+++++|+|||+++..+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 21 24567889999999999777665
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.48 E-value=0.00015 Score=62.95 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-- 127 (291)
.+++.+++.+...++..++|.--|.|+++..+.+++|+.+++|+|-++.+++.+++++.... +++.++.+++.++..
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHH
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHH
Confidence 45677788888888999999999999999999999888999999999999988877665432 478888888877531
Q ss_pred ----C-CCccEEEEccc
Q 022810 128 ----E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ----~-~~~D~v~~~~~ 139 (291)
. .++|.|+...-
T Consensus 86 ~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 86 KELNGINKVDGILFDLG 102 (310)
T ss_dssp HHTTTTS-EEEEEEE-S
T ss_pred HHccCCCccCEEEEccc
Confidence 1 46777777553
No 267
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.47 E-value=0.0025 Score=51.77 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=69.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHH---------------------
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRV--------------------- 109 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~--------------------- 109 (291)
+..+..+.-..+.++.|-+||+|.+.-.+.-.++. ..|++.|+++.+++.|++|+.-
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 33334444456779999999999988877766533 4799999999999999986521
Q ss_pred --------------------h-CCCCeEEEEccccCCc------cCCCccEEEEccccccccc---------HHHHHHHH
Q 022810 110 --------------------L-ELQNVEIIVADISTFE------MEASYDRIYSIEMFEHMKN---------YQNLLKKI 153 (291)
Q Consensus 110 --------------------~-~~~~i~~~~~d~~~~~------~~~~~D~v~~~~~l~~~~~---------~~~~l~~~ 153 (291)
. +.......+.|+.+.. .....|+|+...+...+.+ ...+|..+
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence 1 1224667888888732 2244699999887765522 46799999
Q ss_pred HhccccCeeEEEE
Q 022810 154 SKWMKEDTLLFVH 166 (291)
Q Consensus 154 ~~~L~pgG~l~i~ 166 (291)
..+|.+++++.++
T Consensus 201 ~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 201 APVLPERSVVAVS 213 (246)
T ss_dssp HCCS-TT-EEEEE
T ss_pred HhhCCCCcEEEEe
Confidence 9999666666663
No 268
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0016 Score=51.78 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCc--------cC-C
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE--------ME-A 129 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~~--------~~-~ 129 (291)
+.|+.+|||+||-.|..+....++. |...|.|||+-.- ..+..+.++++ |+.+.. .+ .
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3689999999999999999888876 8889999997432 12234556666 666532 12 6
Q ss_pred CccEEEEccccc----ccccHHHHHH-------HHHhccccCeeEEEEeecc
Q 022810 130 SYDRIYSIEMFE----HMKNYQNLLK-------KISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~v~~~~~l~----~~~~~~~~l~-------~~~~~L~pgG~l~i~~~~~ 170 (291)
+.|+|++...-. .+.|....++ -....++|+|.++...+..
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 789999864321 1234433333 3345678999998876644
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.35 E-value=0.00049 Score=56.07 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~---~-p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~--------- 128 (291)
.+..|+|+|.-.|+.+..+|.. + +..+|+|||++...... ......+. ++|+++++|..+...-
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 3679999999999998887754 2 56899999996543211 12222222 4899999998764311
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
....+|+ ..+-|...+..+.|+....++++|+++++.+.
T Consensus 110 ~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 1223333 34444456778888889999999999988554
No 270
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.27 E-value=0.0011 Score=54.79 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=75.8
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022810 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 131 (291)
+.+.++|+.+||-||+++|....++.... |..-|++|+.|...=......+++. .||-.+.-|+.....- ...
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeE
Confidence 55678899999999999999888887654 6678999999887654444333332 3788888888764211 467
Q ss_pred cEEEEcccccccccHHHH-HHHHHhccccCeeEEEEeec
Q 022810 132 DRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i~~~~ 169 (291)
|+|++.-.- +++..+ .-++...||+||-++++.-.
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 777775321 444443 34678899999999886543
No 271
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.0024 Score=54.79 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhC-------------------------C--
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-------------------------L-- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~---~~~~-------------------------~-- 112 (291)
...+||--|||.|.++..++.. |..+-|-+.|--|+-...-.+ +..+ +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3568999999999999999988 667777788877764433222 1100 0
Q ss_pred ----------CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 113 ----------QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 113 ----------~~i~~~~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.+...-.||+.+.-.. +.||+|+...-+..-.+.-..++.+.++|||||+.+=
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 0111122444432211 4699999887777777888999999999999998654
No 272
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.25 E-value=0.074 Score=47.24 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=64.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH--------C--------CCCEEEEEcCCHHHHHHHHHHHHHh-----C
Q 022810 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--------Y--------SNCKITGICNSKTQKEFIEEQCRVL-----E 111 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~--------p~~~v~~vD~s~~~~~~a~~~~~~~-----~ 111 (291)
..++.........+|+|+||..|..+..+.+. + |..+|+.-|+-.+-....-+.+... .
T Consensus 6 ~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~ 85 (334)
T PF03492_consen 6 KELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK 85 (334)
T ss_dssp HHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC
Confidence 33433334556779999999999998877542 1 1247888885443222222222111 0
Q ss_pred CCC--eEEEEccccCCccC-CCccEEEEccccccccc---------------------------------------HHHH
Q 022810 112 LQN--VEIIVADISTFEME-ASYDRIYSIEMFEHMKN---------------------------------------YQNL 149 (291)
Q Consensus 112 ~~~--i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~---------------------------------------~~~~ 149 (291)
..+ +.-+.+.+-.-..| ++.|++++..++||+.. ...+
T Consensus 86 ~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~F 165 (334)
T PF03492_consen 86 FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSF 165 (334)
T ss_dssp TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 112 34445666554445 89999999999988721 1123
Q ss_pred HHHHHhccccCeeEEEEeeccCC
Q 022810 150 LKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 150 l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
|+.=.+-|+|||++++..++...
T Consensus 166 L~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 166 LKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHhhheeccCcEEEEEEeeccc
Confidence 33334557899999999988876
No 273
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.21 E-value=0.0021 Score=57.84 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc--cCCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE--MEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~~--~~~~~D~v~~~ 137 (291)
.+.+|||.=+|+|.=++..+...++ .+|+.-|+|+++++.+++|++.++++ ++++.+.|+..+. ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999998888887444 58999999999999999999999984 4889999998865 34889988765
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+- ..+..++..+.+.++.||.|+++...
T Consensus 129 Pf----GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 PF----GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -S----S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CC----CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 32 35678999999999999999997554
No 274
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0024 Score=56.18 Aligned_cols=103 Identities=21% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
..+|||-=||+|.=++..+...+..+++.-|+||.+++.+++|++.+...+...+..|+..+... ..||+|=..+ +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP-F- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP-F- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC-C-
Confidence 67999999999999999988876569999999999999999999988444666677888776544 7788775543 2
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..+..+++.+.+.++.||++.++....
T Consensus 131 --GSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 131 --GSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 345678888888888999999865543
No 275
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0006 Score=57.95 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCcc---CCCcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEM---EASYD 132 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~i~~~~~d~~~~~~---~~~~D 132 (291)
.+....++|-||.|.|...+..+++-.-.++..+|++...++..++..... +. +++.+..+|...+.. .++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 355778999999999999999887622347899999999999988877653 23 479999998776532 28899
Q ss_pred EEEEcccccccc----cHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+....=.-.+ -...++..+.+.||+||+++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 998754211111 13568888999999999988854
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.13 E-value=0.0044 Score=54.53 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=68.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-ccCCccC-CCccE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFEME-ASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-~~~~~~~-~~~D~ 133 (291)
...+..|+.+|+=+|+| .|..+..+++.. +++|+++|.+++-.+.|++. |.+ .++... ......- +.+|+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHhHhhCcE
Confidence 44567899999999987 567888888866 79999999999977766653 332 223322 2111111 44899
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|+..-+ ...+....+.|++||.+++.-.
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 887543 4567778889999999888644
No 277
>PHA01634 hypothetical protein
Probab=97.07 E-value=0.0042 Score=46.18 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~D~v~~ 136 (291)
.+.+|+|||.+.|..+++++-+. ...|+++++++...+..+++++...+ ++.. ...+ ++.. ++||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~e---W~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGE---WNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeecee-eccc---ccccCCCcceEEE
Confidence 47899999999999999999773 45899999999999999888876644 2211 1222 2223 67887665
No 278
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0096 Score=52.43 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=80.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCC----CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSN----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------ 127 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~----~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~------ 127 (291)
.++++|+.+|||+++-.|.-+..+.+..-. ..|++-|.++..+.......+.....++.+...|+...+.
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 356789999999999999988888776322 2799999999988888877755444455555555544321
Q ss_pred ---C-CCccEEEEccccc------cccc-----------------HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 128 ---E-ASYDRIYSIEMFE------HMKN-----------------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ---~-~~~D~v~~~~~l~------~~~~-----------------~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
. ..||-|++.-+-. ..++ ...++.+..++||+||.++-++.+..
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1 5799998854221 1111 34588888999999999998877543
No 279
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.0045 Score=53.52 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=74.6
Q ss_pred HHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCC---c---
Q 022810 56 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTF---E--- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d--~~~~---~--- 126 (291)
+++...+.+.+||-+|+| .|..+...++.+...+|+.+|+++..++.|++ + |.+.+...... ..++ .
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhh
Confidence 455677899999999999 57788888888756789999999999998887 3 33222111111 1111 0
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 127 ~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
.. ..+|+.+...-+ +..++.....+++||.+++...+.+...
T Consensus 238 ~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred ccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCccc
Confidence 11 348888765433 4567777888999999888777665443
No 280
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.94 E-value=0.022 Score=51.24 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred CCEEEEEcCCcchHHHHHHHH---------------CCCCEEEEEcCCHHHHHHHHHHHHH--------------hCCCC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQK---------------YSNCKITGICNSKTQKEFIEEQCRV--------------LELQN 114 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~---------------~p~~~v~~vD~s~~~~~~a~~~~~~--------------~~~~~ 114 (291)
..+|+|+|||+|.++..+... .|..+|..-|+-.+-....-+.+.. .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999887665321 1346777777544332222222211 01011
Q ss_pred --eEEEEccccCCccC-CCccEEEEccccccccc--------------------------------------HHHHHHHH
Q 022810 115 --VEIIVADISTFEME-ASYDRIYSIEMFEHMKN--------------------------------------YQNLLKKI 153 (291)
Q Consensus 115 --i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~ 153 (291)
+.-+.+.+-.-.+| ++.+++++..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333332344 88999999999988842 11233333
Q ss_pred HhccccCeeEEEEeeccCC
Q 022810 154 SKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 154 ~~~L~pgG~l~i~~~~~~~ 172 (291)
.+-|.|||.+++...+++.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHhccCcEEEEEEecCCC
Confidence 4568899999999988764
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.84 E-value=0.013 Score=54.78 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----------C--c
Q 022810 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----------F--E 126 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-----------~--~ 126 (291)
..++.+|+=+|||. |..+...++.. |++|+++|.+++.++.+++ .|. +++..|..+ . .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA---~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGA---EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEEeccccccccccchhhhcchh
Confidence 35789999999994 77777888776 7899999999997766654 343 222111110 0 0
Q ss_pred ---------cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 127 ---------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ---------~~--~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+ ..+|+|+.......-+.+..+.+.+.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 3589998876543322333345999999999999776543
No 282
>PTZ00357 methyltransferase; Provisional
Probab=96.83 E-value=0.0086 Score=56.72 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=82.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcC-------------------------C----CCCCEEEEEcCCcchHHHHHHHHC
Q 022810 35 CYFSDASKTLEDAEKAMLELYCERSR-------------------------L----EDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------~----~~~~~vLDiGcG~G~~~~~l~~~~ 85 (291)
..|+.+....+..+.++...+.++.. . .....|+-+|+|-|-+.....+..
T Consensus 643 EVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAa 722 (1072)
T PTZ00357 643 EVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAV 722 (1072)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHH
Confidence 56776666677776766666644321 0 011358999999998765544331
Q ss_pred ----CCCEEEEEcCCHHHHHHHHHHHHH-hCC--------CCeEEEEccccCCccC------------CCccEEEE--cc
Q 022810 86 ----SNCKITGICNSKTQKEFIEEQCRV-LEL--------QNVEIIVADISTFEME------------ASYDRIYS--IE 138 (291)
Q Consensus 86 ----p~~~v~~vD~s~~~~~~a~~~~~~-~~~--------~~i~~~~~d~~~~~~~------------~~~D~v~~--~~ 138 (291)
-..+|++||.++........+..+ ... ++|+++..|+..+..+ +++|+||+ .+
T Consensus 723 k~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLG 802 (1072)
T PTZ00357 723 SALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLG 802 (1072)
T ss_pred HHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhc
Confidence 135899999996654444443221 112 2489999999987432 37999998 44
Q ss_pred cccccccHHHHHHHHHhcccc----Cee
Q 022810 139 MFEHMKNYQNLLKKISKWMKE----DTL 162 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~p----gG~ 162 (291)
+|..-+-.++-|..+.+.||+ +|+
T Consensus 803 SFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 803 SLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccCCHHHHHHHHHhhhhhcccccc
Confidence 554444456788888888876 776
No 283
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.00043 Score=53.13 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=40.0
Q ss_pred ccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022810 126 EME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 126 ~~~-~~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 173 (291)
.+. ++.|+|.+..+++|+ ..-..+++.++++|||||+|.+..|.....
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 344 889999999999998 445678999999999999999988765543
No 284
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.79 E-value=0.003 Score=54.91 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.1
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHH-------HHHHHHHHhCC-C-CeEEEEccccCCccC-
Q 022810 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE-------FIEEQCRVLEL-Q-NVEIIVADISTFEME- 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~-------~a~~~~~~~~~-~-~i~~~~~d~~~~~~~- 128 (291)
....+|.-|+|---|||.+....+.- |+.|.|.|++-.++. ..+.|+++.|. + -+.++.+|....+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 34678999999999999999988854 899999999988876 34567888775 2 367888888775544
Q ss_pred -CCccEEEEccccc------------------------cccc---------HHHHHHHHHhccccCeeEEEEee
Q 022810 129 -ASYDRIYSIEMFE------------------------HMKN---------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~v~~~~~l~------------------------~~~~---------~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..||.|+|.++.. |.+. ...++.-..+.|..||++++-.|
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 6899999988651 1110 23355666788899999887554
No 285
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.69 E-value=0.0036 Score=56.09 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=55.4
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--CCccEEEE
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--ASYDRIYS 136 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~--~~~D~v~~ 136 (291)
.-|||||+|+|.++...++.. +-.|++++.-..|.+.|++...++|. ++|.++.---.+.... ...|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 358999999999999888774 55799999999999999999999998 5788877655544322 23565554
No 286
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.68 E-value=0.014 Score=48.13 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCcchHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHHHh-CCC-CeEEEEccccC-C----cc-CCCccE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADIST-F----EM-EASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~-~~p~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~i~~~~~d~~~-~----~~-~~~~D~ 133 (291)
++.++||||.|.-..=-.+-. .+ +.+.+|.|+++.+++.|+.....+ ++. .|+.....=.+ + .- .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 567899999885443222222 23 678999999999999999988877 443 35555442222 1 11 168999
Q ss_pred EEEccccccc
Q 022810 134 IYSIEMFEHM 143 (291)
Q Consensus 134 v~~~~~l~~~ 143 (291)
+.|++++|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999999755
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=96.61 E-value=0.0088 Score=51.90 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..+++.++.... .+|..|||.-||+|..+....+. +-+++|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 556667766543 67899999999999999988877 88999999999999999998754
No 288
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.48 E-value=0.0055 Score=56.09 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cCCCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~D~v~~~~~l 140 (291)
.-..|+|..+|.|+++.+|... .. ......+..-......+-..|+ | -+..|+.+ ++ .+.+||+|.++..|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~--~V--WVMNVVP~~~~ntL~vIydRGL--I-G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD--PV--WVMNVVPVSGPNTLPVIYDRGL--I-GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ceeeeeeecccccHHHHHhccC--Cc--eEEEecccCCCCcchhhhhccc--c-hhccchhhccCCCCcchhheehhhhh
Confidence 3457999999999999999865 33 3332222211111122233343 1 13345544 22 33899999999988
Q ss_pred cccc---cHHHHHHHHHhccccCeeEEEEe
Q 022810 141 EHMK---NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.... +...++-++-|+|+|+|.++|.+
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 7663 46778999999999999999854
No 289
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.43 E-value=0.0097 Score=49.39 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
..+++.++... ..+|..|||.-||+|+.+.+..+. +.+.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 45666666554 357899999999999999998877 8899999999999988864
No 290
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.004 Score=52.89 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------HHHH--HhCC-CC
Q 022810 48 EKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE-------EQCR--VLEL-QN 114 (291)
Q Consensus 48 ~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~-------~~~~--~~~~-~~ 114 (291)
....+..+...+ -...+++|||+|||.|...+....+. ...+...|.|...++... ..+. .... .-
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~ 176 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKV 176 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhcccc
Confidence 344445554332 13468999999999999999888773 378888888887662111 0111 0000 01
Q ss_pred eEEEEc---cccCCccC-CCccEEEEcccccccccHHHH-HHHHHhccccCeeEEE
Q 022810 115 VEIIVA---DISTFEME-ASYDRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFV 165 (291)
Q Consensus 115 i~~~~~---d~~~~~~~-~~~D~v~~~~~l~~~~~~~~~-l~~~~~~L~pgG~l~i 165 (291)
...... |....... ..||+|.+..++........+ .......++++|++++
T Consensus 177 ~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 177 DEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred eeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 222233 22111111 279999999999888776666 5566677889998776
No 291
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.33 E-value=0.0028 Score=56.58 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCC
Q 022810 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~~~~ 125 (291)
.++|..|.|+.||.|.++..++++ +++|++.|++++++++.+.+++.+.++ +++.+..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 468899999999999999999988 799999999999999999999887773 488888887654
No 292
>PRK13699 putative methylase; Provisional
Probab=96.31 E-value=0.02 Score=47.92 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
..++..++... ..+|..|||.-||+|..+....+. +.+++|+|+++...+.+.+++.+.
T Consensus 150 ~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555555543 357889999999999999988876 889999999999999999888654
No 293
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.24 E-value=0.021 Score=48.68 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHcCCCC-CCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhC-----C-CCeEEE
Q 022810 54 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEII 118 (291)
Q Consensus 54 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~p--------~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~i~~~ 118 (291)
...+.++.+. ..+|+|+|+|.|.++..+.+... ..+++.||+|+.+.+.-++++.... . .++.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 3344443332 47999999999999998877532 3589999999998877776665421 1 25666
Q ss_pred EccccCCccCCCccEEEEcccccccc
Q 022810 119 VADISTFEMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 119 ~~d~~~~~~~~~~D~v~~~~~l~~~~ 144 (291)
..++.+.+ ..-+|+++..+..++
T Consensus 87 ~~~l~~~p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 87 LDDLEEVP---FPGFIIANELFDALP 109 (252)
T ss_dssp ESSGGCS----CCEEEEEESSGGGS-
T ss_pred hhhhhccc---CCEEEEEeeehhcCc
Confidence 34544443 456788888887765
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.22 E-value=0.034 Score=50.44 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-cc----CCccCC
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-~~----~~~~~~ 129 (291)
....+.++.+||.+|||. |..+..+++.. +. ++++++.+++..+.+++.. +...+.....+ .. +.....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCC
Confidence 345567889999999987 88888898887 55 6999999998877776542 21111111111 11 111113
Q ss_pred CccEEEEcccc---------------cccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMF---------------EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l---------------~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+|+-.-.- ....+....+..+.+.|+|+|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 68988774211 111344667888999999999987753
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.21 E-value=0.077 Score=47.50 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-ccc----CCccCCCccEE
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DIS----TFEMEASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~----~~~~~~~~D~v 134 (291)
..++.+|+=+||| .|.++..+++.....+|+++|.++..++.|++..... .+..... +.. .......+|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEE
Confidence 3445599999999 4888888888876679999999999988887643211 1111111 110 11111368998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+-..- ....+..+.+.++|||.+.+....
T Consensus 243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 243 IEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 85433 355888999999999998876543
No 296
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.06 E-value=0.0041 Score=45.13 Aligned_cols=37 Identities=14% Similarity=0.437 Sum_probs=30.3
Q ss_pred CccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+||+|+|..+.-++ .....+++++.+.|+|||.++++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998887665 34678999999999999999985
No 297
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.29 Score=40.99 Aligned_cols=107 Identities=7% Similarity=0.028 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC--CCcc
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME--ASYD 132 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~--~~--~~~D 132 (291)
..+...+|+|+|+..-+..+...+. -.+++.+|+|...+....+.+...-. -.+.-+++|.+... ++ +.-=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 4578999999999887777665432 26899999999987655444433211 14566677765421 12 2222
Q ss_pred EEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022810 133 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~v~~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.++...++..+ .+...++..+...|+||-++++-.-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 23344455555 3456799999999999999988543
No 298
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.00 E-value=0.0036 Score=53.38 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCcchHHH-HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022810 63 DGHTVLDVGCGWGSLSL-YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~-~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
.+..|.|+-+|.|.++. .+... ....|.++|.+|..++..++++..+++ ++...+.+|-....+....|-|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL-- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL-- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc--
Confidence 45789999999999998 45444 256899999999999999999988877 45677778877765557778777642
Q ss_pred cccccHHHHHHHHHhccccCe--eEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDT--LLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG--~l~i~ 166 (291)
++..++-...+.++|+|.| ++-|.
T Consensus 271 --lPSse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 271 --LPSSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred --ccccccchHHHHHHhhhcCCcEEEEe
Confidence 2444444555666777744 44443
No 299
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.99 E-value=0.049 Score=46.20 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEccc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v~~~~~ 139 (291)
.|..|+-+| -.-..+++++-..-..+|..||+++..++...+.+.+.|+++++.+.-|+.+.-+. .+||+.+..++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 467899998 33334444443322568999999999999999999999998899999999885333 79998877654
Q ss_pred ccccccHHHHHHHHHhccccC---eeEEEE
Q 022810 140 FEHMKNYQNLLKKISKWMKED---TLLFVH 166 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pg---G~l~i~ 166 (291)
+.++....++.+=...||.- |++.++
T Consensus 231 -eTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 231 -ETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred -hhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 35566677777767777765 566554
No 300
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.054 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CC----CCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YS----NCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~p----~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
+-.+.+.++.+.+..++|||.|.|.++.-+.+. .| ..++..||+|++..+.=+++++..
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 334445566667789999999999998877654 33 579999999999776655555443
No 301
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.84 E-value=0.1 Score=46.42 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=62.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-CCcc
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~~-~~~D 132 (291)
......++.+||=.||| .|..+..+++.. +. +|+++|.+++.++.+++ .|.+.+ .....++.+.... +.+|
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCC
Confidence 34445578899999987 466777777765 66 69999999987766654 343211 1111122111111 3588
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+-... ....+..+.+.|++||.+++..
T Consensus 238 ~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEVSG------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 8875422 1346777888999999987754
No 302
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.80 E-value=0.056 Score=50.52 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----------------
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---------------- 124 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~---------------- 124 (291)
.++.+|+=+|+|. |..+..+++.. ++.|+++|.++..++.++. .|. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa---~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGA---EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccccceeecCHHH
Confidence 3678999999994 66677777665 7889999999986655543 332 222222211
Q ss_pred -------Ccc-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 125 -------FEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 -------~~~-~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+.. ...+|+|+....+..-+.+.-+.+++.+.+|||++++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111 14699998776554444444577788899999988653
No 303
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.80 E-value=0.022 Score=49.23 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=52.0
Q ss_pred EEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFE 141 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---~~~~D~v~~~~~l~ 141 (291)
+++|+.||.|.++..+.+. +. .+.++|+++.+++..+.+... .++++|+.++.. ...+|+++...+-.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999999888876 45 478899999988877766532 156677777543 25699999987654
Q ss_pred c
Q 022810 142 H 142 (291)
Q Consensus 142 ~ 142 (291)
.
T Consensus 74 ~ 74 (275)
T cd00315 74 P 74 (275)
T ss_pred h
Confidence 3
No 304
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.0085 Score=54.60 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-----CCccEE
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-----ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~~~~~~~-----~~~D~v 134 (291)
.++.+|||.=|++|.-++..+...|+. +|++.|.++..++..+++++.++.. .++....|+..+... ..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 356789999999999999999888775 7999999999999999999888773 467778887664322 679988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
=..+- .....+|+.+.+.++.||.|+++..+
T Consensus 188 DLDPy----Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDPY----GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCCC----CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 76532 34467888899999999999997544
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.62 E-value=0.29 Score=40.14 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCcc----hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccc-cCCccC-CCccEEE
Q 022810 63 DGHTVLDVGCGWG----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADI-STFEME-ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G----~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~-~i~~~~~d~-~~~~~~-~~~D~v~ 135 (291)
....|++..|+.| .++...|.+..+.++++|-+++..+...++.+...+.. .++|+.++. ++.... ...|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4567889976644 33444455556889999999999888888888877773 469988885 333333 6789988
Q ss_pred EcccccccccHH-HHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~-~~l~~~~~~L~pgG~l~i~~ 167 (291)
...-. .+.. .+|+.+. +.|.|.+++..
T Consensus 121 VDc~~---~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 121 VDCKR---EDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred EeCCc---hhHHHHHHHHhc--cCCCceEEEEe
Confidence 86543 3444 4555433 55677766643
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.57 E-value=0.15 Score=45.55 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcC---CHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICN---SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~---s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~ 136 (291)
..++.+||-+|+| .|.++..+++.. +++|++++. ++...+.++ +.|.+.+.....+..+......+|+|+-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 4578899999987 466777777776 779999986 566544443 3443211111111111011146888876
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
... ....+....+.|+++|.+++..
T Consensus 245 ~~g------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 245 ATG------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CcC------CHHHHHHHHHHccCCcEEEEEe
Confidence 432 1346778889999999987643
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.55 E-value=0.23 Score=43.67 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=63.2
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccCCC
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEMEAS 130 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-------~~~~~~ 130 (291)
..+.++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++ .+.+. +..+-.. ......
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcCCC
Confidence 346778899998887 478888888876 7889999999987766543 34321 1111111 111256
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+.... ....++.+.+.|+++|.++...
T Consensus 233 ~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 233 FDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ceEEEECCC------CHHHHHHHHHHhhcCCEEEEEC
Confidence 898875421 1356788889999999987753
No 308
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.52 E-value=0.08 Score=47.14 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH-------HHHHhCC--
Q 022810 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-------QCRVLEL-- 112 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~-------~~~~~~~-- 112 (291)
.++.+.+.+.+..+++.+.+.++....|+|+|.|.+...++....-..-.|+++....-+.+.. ..+..|-
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566666777888888899999999999999999999888876433355677655443333322 2222333
Q ss_pred CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 113 QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 113 ~~i~~~~~d~~~~~~~----~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+..+++++.+...- ...++|+++++... ++...-+.++..-+++|-.++-.
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecc
Confidence 3578888887664321 56788888876633 33334444777778888886553
No 309
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.27 E-value=0.44 Score=40.75 Aligned_cols=119 Identities=9% Similarity=0.057 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCC-
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTF- 125 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~- 125 (291)
+.++..+..........|+.||||-=.-...+... ++.+++=+|. |+.++.-++.+.+.+. .+..++.+|+.+.
T Consensus 68 r~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w 145 (260)
T TIGR00027 68 RFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDW 145 (260)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhH
Confidence 34555554432233457999999876665555321 2466777776 5556665566665432 3678888998621
Q ss_pred c-------cC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 126 E-------ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ~-------~~-~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
. +. ...-++++-+++.+++ ...++++.+.+...||+.+++....+
T Consensus 146 ~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 146 PAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred HHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 0 11 2345788888888883 56779999988888999988876544
No 310
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.27 E-value=0.014 Score=42.08 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 97 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~ 97 (291)
+....+|||||.|.+...|.+. |..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence 5668999999999999999887 78888999744
No 311
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.18 E-value=0.4 Score=42.40 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
.....+++.+||=.|+| .|..+..+++.. +++|++++.+++..+.++ +.|.+.+ + |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~----~~Ga~~v--i--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLAL----ALGAASA--G--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HhCCcee--c--ccccc-CcccceEEE
Confidence 34567789999999976 455667777765 788999999988665554 3454221 1 11111 124578765
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 346788889999999987754
No 312
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.15 E-value=0.016 Score=45.00 Aligned_cols=100 Identities=23% Similarity=0.257 Sum_probs=62.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-C-ccCCCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F-EMEASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~~D~v~~~~~l 140 (291)
+++.+-+|+..=..-....+.. ..+|..||.++--++ +.++ +++ .+...|+.. + ...++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~---~~~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQ---EEFR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccC---cccc----cccccccHHHHHHHHHHhhccchhhheechh
Confidence 5678888888665555444442 557888887652111 1110 121 122233322 1 122789999999999
Q ss_pred cccc-----c------HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 141 EHMK-----N------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~-----~------~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
+|.. | -...+.++.++|||||.|++..|.-+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8871 1 24578888999999999999887543
No 313
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.14 E-value=0.052 Score=47.04 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--------------------CCCEEEEEcCCHHH--HHHHHHHHHHh-----------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--------------------SNCKITGICNSKTQ--KEFIEEQCRVL----------- 110 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--------------------p~~~v~~vD~s~~~--~~~a~~~~~~~----------- 110 (291)
..+||.||.|-|.-...++..+ +...++.||+.+-. ++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999988766666543 11489999987642 33333222222
Q ss_pred --CC--C--CeEEEEccccCCccC--------CCccEEEEccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022810 111 --EL--Q--NVEIIVADISTFEME--------ASYDRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 111 --~~--~--~i~~~~~d~~~~~~~--------~~~D~v~~~~~l~~~-----~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.. + ++.|.+.|+.....+ ...++|...+++..+ ....++|.++-..++||..|+|.+.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 11 1 578999998876532 136777766655433 5567899999999999999888653
No 314
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.08 E-value=0.13 Score=41.32 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------C-CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------E-AS 130 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~---~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-------~-~~ 130 (291)
.+..|+|+|.-.|..++.+|.. . ...+|.++|++-..++-+... .++|.++.++-.+... . +.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 4568999999999988888764 2 237999999987654333221 4589999998776431 1 22
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 174 (291)
--+.++..+-|+....-+.++....+|..|-++++.+...+..+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 24455666777777777888888899999999999877666554
No 315
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.05 E-value=0.099 Score=44.22 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHH---C--CCCEEEEEcCCH------------------------
Q 022810 48 EKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK---Y--SNCKITGICNSK------------------------ 97 (291)
Q Consensus 48 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~--p~~~v~~vD~s~------------------------ 97 (291)
....+..+++.+. ..-+..|+|+||-.|..+..++.. + ++.+++++|.=+
T Consensus 58 Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~ 137 (248)
T PF05711_consen 58 RLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGY 137 (248)
T ss_dssp HHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccc
Confidence 3344455555442 122348999999999877665432 2 345788887211
Q ss_pred --HHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 98 --TQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 98 --~~~~~a~~~~~~~~~--~~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
..++..++++...++ +++.++.+.+.+..+. .++-++....-+ -+.....|+.+...|.|||++++.+.+.
T Consensus 138 ~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 138 LAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 133444444444454 4799999998774332 333333332211 1446778999999999999999976544
No 316
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.86 E-value=0.064 Score=44.25 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHC----C--CC---EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY----S--NC---KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~----p--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------- 126 (291)
-.+++|++.-.|..+..+.++. + +. .+++||+.+- ..++.+.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4689999999999999998873 1 12 3999998653 24456778899988742
Q ss_pred cC-CCccEEEEccc-----ccccccH------HHHHHHHHhccccCeeEEEEeec
Q 022810 127 ME-ASYDRIYSIEM-----FEHMKNY------QNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~-~~~D~v~~~~~-----l~~~~~~------~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+. ++.|+|+|.+. +|.+..+ ...|.-...+|+|||.++...+-
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 23 58999999874 4444322 23455556789999998875543
No 317
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.71 E-value=0.17 Score=45.69 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=52.4
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc
Q 022810 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94 (291)
Q Consensus 15 yd~~~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD 94 (291)
||+....|..+++ .+.|+ ..|+++. .-.+.+.+.++.+||-|.+|......++.+. ..+|++||
T Consensus 1 ~~~~~~~~~~~f~-~lvY~-~~WEDp~------------vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVD 64 (380)
T PF11899_consen 1 YGLLERLFTQFFR-GLVYA-QCWEDPR------------VDMEALNIGPDDRVLTITSAGCNALDYLLAG--PKRIHAVD 64 (380)
T ss_pred CchHHHHHHHhcc-ceeec-cccCCcH------------HHHHHhCCCCCCeEEEEccCCchHHHHHhcC--CceEEEEe
Confidence 5666667776666 46675 3454321 1234567889999999988766665555543 58999999
Q ss_pred CCHHHHHHHHHHH
Q 022810 95 NSKTQKEFIEEQC 107 (291)
Q Consensus 95 ~s~~~~~~a~~~~ 107 (291)
+|+.++...+-+.
T Consensus 65 lNp~Q~aLleLKl 77 (380)
T PF11899_consen 65 LNPAQNALLELKL 77 (380)
T ss_pred CCHHHHHHHHHHH
Confidence 9999887776443
No 318
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.12 Score=44.80 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred CCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022810 64 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~ 141 (291)
+.+|.-||.| .|..+.-++.-. ++.|+.+|.|...+......+ + .++.....+...+... .+.|+|+..-.+-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f---~-~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF---G-GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh---C-ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4578888888 577777777655 899999999988766555443 2 2567776666655444 6789999866555
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.-..+.-..+++.+.||||++++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 556777788999999999998754
No 319
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.58 E-value=0.16 Score=45.08 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 46 DAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
..+.+.+..++..+. ..+-..|+|+|.|.|.++..++-.+ +..|.+||-|....+.|++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 344444555554443 3456789999999999999999877 8999999999877766654
No 320
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.49 E-value=0.17 Score=43.68 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc----cCCccCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADI----STFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~----~~~~~~~~ 130 (291)
......++.+||=+|+| .|..+..+++.. +.+ |+++|.++...+.+++ .|.+.+ +...+. ........
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCC
Confidence 34455688899999886 455666677665 665 9999998886665544 343211 100111 01111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... ....++.+.+.|+|+|.+++..
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 888875321 1346777888999999987754
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.46 E-value=0.38 Score=42.79 Aligned_cols=95 Identities=9% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022810 60 RLEDGHTVLDVGCG-WGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
..+++.+||-+||| .|..+..++++ ..+.+|+++|.+++.++.+++ .+. . .... +......+|+|+-.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~---~~~~~~g~d~viD~ 229 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLID---DIPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehh---hhhhccCCcEEEEC
Confidence 45678999999987 35555666664 435689999999887777653 221 1 1111 11111247888743
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
--- ......+....+.|+++|++++..
T Consensus 230 ~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 230 VGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 210 113457888889999999987754
No 322
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.42 E-value=0.048 Score=49.87 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-------cC-CCccEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------ME-ASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------~~-~~~D~v 134 (291)
.+.++|-+|-|.|.+...+...+|..++++|+++|.+++.|+..+.-..-++..+...|..+.. .. ..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4568899999999999999888888999999999999999998764322122333344433221 12 568988
Q ss_pred EEcc---ccccccc------HHHHHHHHHhccccCeeEEEEeeccC
Q 022810 135 YSIE---MFEHMKN------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~---~l~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~ 171 (291)
...- -.+.+.. .+.++..++..|.|.|.+++...++.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 7632 1222211 25588889999999999988766554
No 323
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.26 E-value=0.12 Score=44.78 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCCCCCE--EEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC-
Q 022810 49 KAMLELYCERSRLEDGHT--VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST- 124 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~--vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~- 124 (291)
.+.++.++..-...++.. =+|||.|.-.+--.+.....+....++|++...+..|+++..++++ +.+.+++....+
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt 165 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT 165 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence 344555544332222322 3788887665544443332356789999999999999999999888 457766664322
Q ss_pred -------CccCCCccEEEEccccc
Q 022810 125 -------FEMEASYDRIYSIEMFE 141 (291)
Q Consensus 125 -------~~~~~~~D~v~~~~~l~ 141 (291)
...+..||++.|++++.
T Consensus 166 ll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 166 LLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred cchhhhccCccceeeEEecCCchh
Confidence 11124599999999873
No 324
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.13 E-value=0.35 Score=38.35 Aligned_cols=101 Identities=19% Similarity=0.123 Sum_probs=61.4
Q ss_pred EEcCCcchHHHHHHHHCC-CCEEEEE--cCCHHHHHHHH---HHHHHhCCCCeE-EEEccccCCcc----C-CCccEEEE
Q 022810 69 DVGCGWGSLSLYIAQKYS-NCKITGI--CNSKTQKEFIE---EQCRVLELQNVE-IIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 69 DiGcG~G~~~~~l~~~~p-~~~v~~v--D~s~~~~~~a~---~~~~~~~~~~i~-~~~~d~~~~~~----~-~~~D~v~~ 136 (291)
=+|=|.-.++..|++.+. +..+++. |...+..+... .++....-.++. ....|+..+.. . .+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777778888988875 5566554 44433332222 333322111222 34456666531 2 78999999
Q ss_pred ccccccc-------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022810 137 IEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
+.+-..- .-...+++.+..+|+++|.+.|+...
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9875441 11356888899999999999886543
No 325
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.09 E-value=0.22 Score=42.49 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC
Q 022810 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 125 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~ 125 (291)
+..+.+.-.+.+...++|+|||.|.++.++++.. +...++.||-..... .+-...+.... ..+.=+..|+.++
T Consensus 7 i~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 7 IGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence 3344333334677899999999999999999886 456899999755432 22333333321 1455666777776
Q ss_pred ccC---C---CccEEEEccccccc--ccHHHHHHHHHhccc-------cCeeEEEEeeccC
Q 022810 126 EME---A---SYDRIYSIEMFEHM--KNYQNLLKKISKWMK-------EDTLLFVHHFCHK 171 (291)
Q Consensus 126 ~~~---~---~~D~v~~~~~l~~~--~~~~~~l~~~~~~L~-------pgG~l~i~~~~~~ 171 (291)
... . ...-|+.. --|+ ...+-.|+.+.+..+ +.|.++.....+.
T Consensus 86 ~l~~~~~~~~~~~~vv~i--sKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH~ 144 (259)
T PF05206_consen 86 DLSKLPELQNDEKPVVAI--SKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCCHHR 144 (259)
T ss_pred chhhcccccCCCCcEEEE--EccccccchhHHHHhhccCccccccCCccCeEEEEeCCCCc
Confidence 432 1 11212211 1133 234566776665543 5677665544443
No 326
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.06 E-value=0.84 Score=43.01 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccC-Ccc--CCCccE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADIST-FEM--EASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p----~~~v~~vD~s~~~~~~a~~~~~~~~~--~~i~~~~~d~~~-~~~--~~~~D~ 133 (291)
++..|.|..||+|.+.....+... ...++|.+....+...++.++.-.+. +......+|-.. ... ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 567999999999998876544321 24699999999999999888765554 223333344322 111 156899
Q ss_pred EEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++++++... ..-..++..+...|++||...+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 9988854221 0123477778889999998665444
No 327
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.01 E-value=0.28 Score=43.10 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=51.3
Q ss_pred EEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C-CccEEEEccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A-SYDRIYSIEMFE 141 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~-~~D~v~~~~~l~ 141 (291)
+++|+-||.|.+..-+.+. +. .+.++|+++.+.+..+.|+. ....+|+.++... . .+|+++..++-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCc
Confidence 7999999999999999877 54 57899999998888777763 6788999887633 3 599999877654
Q ss_pred cc
Q 022810 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 73 ~f 74 (335)
T PF00145_consen 73 GF 74 (335)
T ss_dssp TT
T ss_pred eE
Confidence 43
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.85 E-value=0.22 Score=44.05 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=60.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---CccCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST---FEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~---~~~~~~ 130 (291)
..+.+.++.+||=+|+| .|..+..+++.. +.+ |++++.+++..+.+++ .|.+.+ .....+... ......
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCC
Confidence 45567789999999886 355666677665 677 9999999887666543 343211 111111111 111136
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 232 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSG------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 898885422 1345566778899999987643
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.69 E-value=0.24 Score=44.60 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-Cc--cCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-FE--MEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~-~~--~~~~ 130 (291)
....++++.+||=.|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|.+.+ .....|..+ +. ..+.
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCC
Confidence 44567788999999986 366677777765 66 69999999987766643 343211 111111111 00 0135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 260 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAG------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCC------ChHHHHHHHHHHhcCCEEEEEc
Confidence 788875321 1346677788899999987643
No 330
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.55 E-value=0.89 Score=41.58 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=61.4
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
++.+.+..+. .++.+|+=+|+|. |......++.. |++|+++|.++...+.|+. .|. ... +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGY---EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCC---EEc--cHHHH--Hc
Confidence 3444444443 4789999999995 55555555555 7899999999886555543 333 221 12111 14
Q ss_pred CccEEEEcccccccccHHHHHHH-HHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 167 (291)
..|+|+... .....+.. ..+.+++||+++...
T Consensus 257 ~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 579988642 12345554 488999999987654
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.51 E-value=0.85 Score=40.77 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=60.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEAS 130 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~----~~~~~~ 130 (291)
.....++.+||-.||| .|..+..+++.. +. +|+++|.++...+.+++ .|.+. +.....+..+ ......
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 3456789999999986 366677777776 66 59999999987766643 34321 1111111111 111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+|+|+-... . ...+....+.+++||++++..
T Consensus 246 ~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEC
Confidence 888875321 1 245677778899999987753
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.42 E-value=0.42 Score=35.73 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=56.9
Q ss_pred CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCccEEEEccccccccc
Q 022810 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYDRIYSIEMFEHMKN 145 (291)
Q Consensus 73 G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~-~~~D~v~~~~~l~~~~~ 145 (291)
|.|..+..+++.. +.+|+++|.++..++.+++ .|.+ .++..+-.++. .+ ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecC------
Confidence 5688899999887 6999999999997766654 3431 12222211111 11 36898886533
Q ss_pred HHHHHHHHHhccccCeeEEEEeec
Q 022810 146 YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 146 ~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
....++...++|+|+|.+++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 256888899999999999886543
No 333
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.37 E-value=0.42 Score=40.27 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC---CccCCCccEEEE
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST---FEMEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~---~~~~~~~D~v~~ 136 (291)
.++.+||..|+|. |..+..+++.. +.++++++.++...+.+++ .+... +.....+... ......+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 6789999999985 66677777665 7899999999876665543 22211 1100001100 011256899886
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...- ...+..+.+.|+++|.++...
T Consensus 208 ~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 208 AVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 4321 145677788899999987643
No 334
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.36 E-value=0.37 Score=37.02 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+|+..++..++.+...+| -|||+|=|.|..=.+|.+.+|+.+++++|-.-..- ...-.+.-.++.+|+.+..
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~~P~~~~~ilGdi~~tl 84 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSSTPPEEDLILGDIRETL 84 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---GGGEEES-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCCCCchHheeeccHHHHh
Confidence 466677777777766654 79999999999999999999999999999533211 1111112346788877642
Q ss_pred cC-----CCccEEEEcccccccccH---HH-HHHHHHhccccCeeEEEE
Q 022810 127 ME-----ASYDRIYSIEMFEHMKNY---QN-LLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ~~-----~~~D~v~~~~~l~~~~~~---~~-~l~~~~~~L~pgG~l~i~ 166 (291)
.. .+.-++.+..-.+.-+.- .. +-.-+..+|.|||+++-.
T Consensus 85 ~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 85 PALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 11 233333333222221111 11 223456789999987653
No 335
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.36 E-value=0.31 Score=47.58 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC-------C-----CCEEEEEcCCH---HHHHHHH-----------HHHHH-----h
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY-------S-----NCKITGICNSK---TQKEFIE-----------EQCRV-----L 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~-------p-----~~~v~~vD~s~---~~~~~a~-----------~~~~~-----~ 110 (291)
.+.-+|+|+|-|+|.+.....+.+ | ..+++++|..+ +.+..+. +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345799999999999777665443 2 24789999644 2222221 11111 1
Q ss_pred CC-------C--CeEEEEccccCCccC--CCccEEEEccccc-cccc--HHHHHHHHHhccccCeeEEEE
Q 022810 111 EL-------Q--NVEIIVADISTFEME--ASYDRIYSIEMFE-HMKN--YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 111 ~~-------~--~i~~~~~d~~~~~~~--~~~D~v~~~~~l~-~~~~--~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|. . .+++..+|+.+.... ..+|+++...--- .-++ ...+++.+.++++|||++.-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 11 1 345677888764322 5699999875221 1122 267999999999999998743
No 336
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.30 E-value=0.47 Score=40.16 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022810 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
.+.+++...|+|.-.|+.+-.|.++ +..|++||..+- | +.+-..| .|+....|-..+.+. .+.|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a-~sL~dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----A-QSLMDTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchh----h-hhhhccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 4568999999999999999999988 889999998663 2 2222333 588888898888764 7889888864
Q ss_pred cccccccHHHHHHHHHhcc
Q 022810 139 MFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L 157 (291)
+ +.+..+-..+...|
T Consensus 279 V----EkP~rv~~li~~Wl 293 (358)
T COG2933 279 V----EKPARVAALIAKWL 293 (358)
T ss_pred h----cCcHHHHHHHHHHH
Confidence 3 44455555555543
No 337
>PRK11524 putative methyltransferase; Provisional
Probab=93.12 E-value=0.084 Score=45.82 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred CeEEEEccccCCc--cC-CCccEEEEccccccc----------------ccHHHHHHHHHhccccCeeEEEEe
Q 022810 114 NVEIIVADISTFE--ME-ASYDRIYSIEMFEHM----------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 114 ~i~~~~~d~~~~~--~~-~~~D~v~~~~~l~~~----------------~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+.+++++|+.+.. .+ +++|+|++++++... .-...++..+.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4568889988742 23 789999999876321 112468899999999999998853
No 338
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.93 E-value=0.26 Score=40.48 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+..+.++...+.-.+.-|.+||.|.|+.++.+.+.. ..+...|+.++..+.-.+........ +..+..+|+..+.
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAPG-KLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCCc-ceEEeccccceeh
Confidence 445566666666677899999999999999998763 45788999999888877665554433 6777888876543
No 339
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.82 E-value=1.2 Score=39.28 Aligned_cols=95 Identities=12% Similarity=0.175 Sum_probs=59.6
Q ss_pred cCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---ccCCccC-CCcc
Q 022810 59 SRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTFEME-ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---~~~~~~~-~~~D 132 (291)
+...++.+||-.|||. |..+..+++.. +. ++++++.++...+.+++ .+.+. ++..+ ....... ..+|
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhccCCCcc
Confidence 3434788999998875 66777777765 66 79999998887664433 33321 11111 1111111 4589
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+..... ...++.+.+.|+++|.++..
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 98864321 23567888999999998764
No 340
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.79 E-value=0.28 Score=44.78 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccC--CccC--CCccEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADIST--FEME--ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~--~~v~~vD~s~~~~~~a~~~~~~-~~~~~i~~~~~d~~~--~~~~--~~~D~v~ 135 (291)
....+.|+|.|.|.-.-.+....++ ..++.||.+..|........+. .....+.+...-+.. .+.. ..||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4567899999987765555555433 4799999999999988877765 111111111101111 1222 5699999
Q ss_pred EcccccccccH----HHHHHHHHhccccCeeEEEEeecc
Q 022810 136 SIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~~----~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
+...++++.+. ...-....+..++|+.+++...+.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999888442 223334566778999888866554
No 341
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.78 E-value=2.8 Score=33.09 Aligned_cols=95 Identities=8% Similarity=-0.012 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---c--cCCCccEEEEc
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---E--MEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~---~--~~~~~D~v~~~ 137 (291)
++.+|+-|||=+-.....- ...++.+++..|.+... ...+- + .|+.=|.... + ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-c-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 5689999999764433322 13357899999998763 22222 2 4555565542 1 12789999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+++-.-+-.......++.++++++.+++.+.
T Consensus 94 PPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 9993333344566667777789898887654
No 342
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.45 E-value=0.82 Score=40.00 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~ 139 (291)
.++.+||=+||| .|.++..+++.. +++ |.++|.++..++.+... . ++ |..+. ....+|+|+-...
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCC
Confidence 356789999987 577778888776 665 77788888765554321 1 11 11110 1246888875422
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
....+..+.+.|+++|++++...
T Consensus 210 ------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------CHHHHHHHHHhhhcCcEEEEEee
Confidence 23467788889999999887543
No 343
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.34 E-value=2.9 Score=34.59 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||-.|++ |.++..+++.+ .+.+|++++.++...+.+.+..... .++.++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35789999886 44444444332 3789999999887665544433332 257888899876421 03
Q ss_pred CccEEEEccccccc---c--------------cHHHHHHHHHhccccCeeEEEEee
Q 022810 130 SYDRIYSIEMFEHM---K--------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~v~~~~~l~~~---~--------------~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..|.++.+...... . ....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877766532111 0 112335555666677887666543
No 344
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.24 E-value=0.26 Score=43.47 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=49.1
Q ss_pred EEEEcCCcchHHHHHHHHCCCCEE-EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 67 VLDVGCGWGSLSLYIAQKYSNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~l~~~~p~~~v-~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
|+|+.||.|.++.-+.+. |.++ .++|+++.+++..+.++. . .+..+|+.++... ..+|+++...+-.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence 689999999999998866 6664 579999998877776652 2 3456787776532 4689998876543
No 345
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.06 E-value=0.86 Score=40.66 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=62.5
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccC-Cc--cCC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~-d~~~-~~--~~~ 129 (291)
....+.++.+||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++ ..|.+.+ ..... +..+ .. .++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 3355678999999997 3778888888876 8899999988876555542 2343211 11101 1111 00 113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-.. . ...+..+.+.|+++|.+++.
T Consensus 228 gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCCEEEEE
Confidence 578887532 1 23667788899999998764
No 346
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.05 E-value=0.94 Score=33.12 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=53.5
Q ss_pred CCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcccccccc
Q 022810 72 CGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 72 cG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----~-~~~D~v~~~~~l~~~~ 144 (291)
||.|..+..+++.. .+..|+.+|.+++.++.+++ . .+.++.+|..+... . ...|.|++...- .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~---d 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDD---D 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSS---H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCC---H
Confidence 56667777766543 24589999999997655543 3 36789999987531 2 577877775331 1
Q ss_pred cHHHHHHHHHhccccCeeEEEEee
Q 022810 145 NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.....+....+.+.|...++....
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 122234445566778887776544
No 347
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.02 E-value=0.6 Score=41.49 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---CccCCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST---FEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~---~~~~~~ 130 (291)
......++.+||=.|+| .|..+..+++.. +.+ |++++.+++..+.++ +.|.+.+ .....+... ......
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCC
Confidence 34456688899999986 455666677766 665 789999888766553 2343211 111111111 111135
Q ss_pred cc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 131 YD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D-~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+| +|+-.. . ....+....+.|++||.+++..
T Consensus 229 ~d~~v~d~~-----G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETA-----G-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECC-----C-CHHHHHHHHHHhhcCCEEEEEc
Confidence 67 444321 1 1356788889999999987753
No 348
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.93 E-value=2.6 Score=36.93 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEE
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~--~~~~~D~v~ 135 (291)
....++.+||-.|+| .|..+..+++.. +.+|++++.+++..+.+++ .+.+. ++...-.... ..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADE--VVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcE--EeccCCcchHHhccCCCCEEE
Confidence 556788899999987 677777777765 7899999999887666532 23211 1111100000 114588887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.... ....+..+.+.|+++|.++...
T Consensus 231 ~~~~------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVV------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence 6421 1245677788999999887643
No 349
>PLN02740 Alcohol dehydrogenase-like
Probab=91.84 E-value=2 Score=38.81 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=60.4
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-----ccC-Cc--
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-----IST-FE-- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-----~~~-~~-- 126 (291)
+...+.++.+||=+|+| .|..+..+++.. +. +|+++|.+++.++.+++ .|.+. ++... ..+ ..
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH
Confidence 34567789999999987 456667777766 66 69999999987766643 34321 22111 111 00
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
..+.+|+|+-... ....+....+.+++| |.+++.
T Consensus 265 ~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 265 TGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEE
Confidence 0125888876432 134667777788886 887664
No 350
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.81 E-value=2.5 Score=36.00 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=59.9
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccCCCccEE
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~-~~~i~~~~~d~~~~~~~~~~D~v 134 (291)
.....++.+||-.|||. |..+..+++.. +.+ |++++.+++..+.+++ .+ .+.+..... .......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccch---hhhcCCCCCEE
Confidence 45667889999998874 66777777766 667 9999998887665543 23 111110000 11112468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC------hHHHHHHHHHhcCCcEEEEE
Confidence 754211 23567778889999998764
No 351
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.79 E-value=2.7 Score=37.41 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=59.4
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcc---ccC----CccC
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVAD---IST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d---~~~----~~~~ 128 (291)
...+.++.+||-+|||. |..+..+++.. +.+|+++|.+++.++.+++ .|.+. +.....+ +.+ ....
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhccc
Confidence 45667899999999964 66777777776 7789999999987766643 34321 1111111 100 0001
Q ss_pred CCcc----EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYD----RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D----~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+| +|+-. . .....+..+.+.|++||++++..
T Consensus 236 ~g~d~~~d~v~d~-----~-g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFEC-----S-GSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEEC-----C-CChHHHHHHHHHHhcCCeEEEEC
Confidence 2344 44421 1 12346667778899999987753
No 352
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.66 E-value=2 Score=37.67 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccCC---ccC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTF---EME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~~~~---~~~ 128 (291)
+...+.++.+||=.|. |.|..+..+++.. +.++++++.+++..+.++ ..|.+.+ +... +..+. ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~v-i~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVA-FNYKTVKSLEETLKKASP 205 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEE-EeccccccHHHHHHHhCC
Confidence 4456778999999884 4778888888776 889999998888666554 3444221 1111 11110 011
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.+|+|+-.. . ...+....++|+++|.++..
T Consensus 206 ~gvdvv~d~~-----G--~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 206 DGYDCYFDNV-----G--GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCeEEEEECC-----C--HHHHHHHHHHhCcCcEEEEe
Confidence 4588877532 1 12457788899999998864
No 353
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.58 E-value=0.68 Score=41.02 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=64.8
Q ss_pred HHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCc----cC
Q 022810 56 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFE----ME 128 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~~~----~~ 128 (291)
.+...++++.+||=.|+ |.|.+++.|++.. +..++++-.+++..+ .+++.|.+. +.+...|+.+-. ..
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCC
Confidence 34456788999999994 5678999999987 657667666665443 334445432 333333333321 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+|+|+..-- ...+.+..+.|+++|.++....
T Consensus 210 ~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 36999987432 4566778888999999877543
No 354
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=91.52 E-value=1.3 Score=31.56 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=48.6
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~ 143 (291)
.+|| +-||+|..+..++++ .++.+++.|+ ++++...+..+.... ..+|+|+..+-+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi--- 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQV--- 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchH---
Confidence 4566 679999777766654 4566677777 577777777665333 578999987544
Q ss_pred ccHHHHHHHHHhccccCeeEE
Q 022810 144 KNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l~ 164 (291)
...+.++.+.+.+-|+=+
T Consensus 61 ---~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 61 ---AYMLPDLKKETDKKGIPV 78 (95)
T ss_pred ---HHHHHHHHHHhhhcCCCE
Confidence 445666666666655433
No 355
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.44 E-value=0.65 Score=41.95 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=54.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
++.+|+=+|+| .|..+...+... +++|+++|.++...+.+.... +. .+.....+...+... ..+|+|+.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~---g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEF---GG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhc---Cc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45679999998 566666666665 789999999887554433221 21 122111111111111 568999975422
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+.+.-+-++..+.++|+++++-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 11111111235555668999876543
No 356
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.38 E-value=4 Score=35.73 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----ccCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 129 (291)
....+.++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCC
Confidence 45566788999999876 366667777765 666 8899998887665532 3332 2222211111 1125
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+++.... ....+..+.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6899986421 1356777788899999987643
No 357
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=91.22 E-value=1.4 Score=37.88 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=49.1
Q ss_pred hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHH
Q 022810 19 TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT 98 (291)
Q Consensus 19 ~~~y~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~ 98 (291)
..++..+++. +.|+ ..|+.+...++ .+.+..+.+|.-||+|.-....++++. ..+|.+||+++.
T Consensus 33 erlf~vlFsg-LvYp-qiwEDp~Vdme------------am~~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~a 96 (414)
T COG5379 33 ERLFGVLFSG-LVYP-QIWEDPSVDME------------AMQLGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPA 96 (414)
T ss_pred HHHHHHHhcc-cccc-cccCCccccHH------------HHhcCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHH
Confidence 4555555544 5564 45554433322 123457889999999977677777755 689999999999
Q ss_pred HHHHHHHHHH
Q 022810 99 QKEFIEEQCR 108 (291)
Q Consensus 99 ~~~~a~~~~~ 108 (291)
.+...+-+..
T Consensus 97 hiAln~lkla 106 (414)
T COG5379 97 HIALNRLKLA 106 (414)
T ss_pred HHHHHHHHHH
Confidence 9877655443
No 358
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=91.17 E-value=3.6 Score=35.83 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
....+.++.+||=.|+| .|..+..+++.. |.++++++.+++..+.+++ .|.+.+. +.........+|+|+
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~vi 219 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVVV 219 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEEE
Confidence 45567788999998865 344555556555 7889999999887766654 3432111 111111225689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
-... ....+..+.+.|+++|.++.
T Consensus 220 d~~g------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EATG------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECCC------ChHHHHHHHHHhhcCCEEEE
Confidence 6421 13456777888999999876
No 359
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.08 E-value=2.4 Score=31.80 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022810 64 GHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l 140 (291)
..+|+|+|-|.=. .+..|++. |..|+++|+++. .+. . .+.++.-|+.+.... ...|+|.|..+-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 4499999998654 56666666 799999999887 121 2 467889999886555 788999987654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 172 (291)
. +....+-++.+ +-|.-++|...+.+.
T Consensus 81 ~---El~~~il~lA~--~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 81 P---ELQPPILELAK--KVGADLIIRPLGGES 107 (127)
T ss_dssp T---TSHHHHHHHHH--HHT-EEEEE-BTTB-
T ss_pred h---HHhHHHHHHHH--HhCCCEEEECCCCCC
Confidence 2 33334444444 245667776655443
No 360
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.95 E-value=2.1 Score=37.02 Aligned_cols=75 Identities=24% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~~- 128 (291)
.|..||==|.|.|. .+..++++ ++++...|++++..+...+..++.| ++....+|+.+.. .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57788888888773 56667776 7899999999999888888887765 6888899988753 12
Q ss_pred CCccEEEEccccc
Q 022810 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~v~~~~~l~ 141 (291)
+..|+++.+..+-
T Consensus 113 G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 113 GDVDILVNNAGIV 125 (300)
T ss_pred CCceEEEeccccc
Confidence 6789999887543
No 361
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=90.92 E-value=0.18 Score=41.33 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~ 107 (291)
.+++.+++.+...++...+|.--|.|.++..+.+++|..++++.|-+|-+.+.|....
T Consensus 30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 4678888888888999999999999999999999998899999999998777666544
No 362
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.87 E-value=1.3 Score=38.34 Aligned_cols=89 Identities=21% Similarity=0.153 Sum_probs=53.2
Q ss_pred CEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022810 65 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~ 142 (291)
.+|+=+|.| .|.++..+.+......+++.|.+...++.+.+ .++ .....+..........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHH-
Confidence 567778877 46677777777555678999998876554432 222 11111111011114579998876653
Q ss_pred cccHHHHHHHHHhccccCeeE
Q 022810 143 MKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l 163 (291)
....+++++...|++|..+
T Consensus 76 --~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred --HHHHHHHHhcccCCCCCEE
Confidence 3456777777777776543
No 363
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.67 E-value=2 Score=37.55 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~~ 128 (291)
......++.+||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++ .|.+. ++...-.++. ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDA--VFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCccHHHHHHHHCC
Confidence 4456778899998884 5677888888876 8899999988886665543 34422 1111111110 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+-.. . ...+....+.|+++|.++..
T Consensus 210 ~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEE
Confidence 4588877532 1 24567888899999998764
No 364
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.63 E-value=2.8 Score=37.59 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEcc
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~ 138 (291)
..++.+||-.|+| .|..+..+++.. +.++++++.++..... .+++.|.+.+ +...+...... .+.+|+|+-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~---~~~~~Ga~~v-i~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDE---AINRLGADSF-LVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhh---HHHhCCCcEE-EcCCCHHHHHhhcCCCCEEEECC
Confidence 4578899999987 466777777776 7888888877653222 2223343211 10111111110 13478777532
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
. ....+....+.|+++|.++...
T Consensus 256 g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 S------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred C------CHHHHHHHHHHhcCCcEEEEeC
Confidence 1 1335777888999999987643
No 365
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.52 E-value=0.84 Score=40.49 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=54.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---C-CccEEEEcc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---A-SYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~-~~D~v~~~~ 138 (291)
..+++|+-||.|.+..-+... +.+ +.++|+++..++.-+.+... ..++..|+...... . .+|+++..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 468999999999999888876 554 67899999987776665532 45667777765433 2 789999987
Q ss_pred ccccc
Q 022810 139 MFEHM 143 (291)
Q Consensus 139 ~l~~~ 143 (291)
+-+.+
T Consensus 76 PCQ~F 80 (328)
T COG0270 76 PCQDF 80 (328)
T ss_pred CCcch
Confidence 66554
No 366
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.12 E-value=1.9 Score=39.00 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=47.3
Q ss_pred CEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022810 65 HTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----~~~D~v~~~~~ 139 (291)
++||=|||| .|........+....+|+..|-|.+.++.+.... ..+++....|+.+.+.- ..+|+|++..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 579999996 3443333322222379999999988665554432 23788999999886321 56799987654
Q ss_pred c
Q 022810 140 F 140 (291)
Q Consensus 140 l 140 (291)
.
T Consensus 78 ~ 78 (389)
T COG1748 78 P 78 (389)
T ss_pred c
Confidence 3
No 367
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=90.05 E-value=1.4 Score=31.44 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred EcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHH
Q 022810 70 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQN 148 (291)
Q Consensus 70 iGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~~~~~ 148 (291)
+-||+|..+..++++ +++.+++.++ .+++...+..+.... ..+|+|++.+- ...
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~Pq------v~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQ------VRY 58 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhcCCCCEEEEChh------HHH
Confidence 458888877666554 5667777777 577888887665433 67999998743 344
Q ss_pred HHHHHHhccccCee
Q 022810 149 LLKKISKWMKEDTL 162 (291)
Q Consensus 149 ~l~~~~~~L~pgG~ 162 (291)
.+.++.+.+.+.++
T Consensus 59 ~~~~i~~~~~~~~~ 72 (96)
T cd05564 59 MLDEVKKKAAEYGI 72 (96)
T ss_pred HHHHHHHHhccCCC
Confidence 56666665555454
No 368
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.99 E-value=3 Score=30.62 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=56.9
Q ss_pred CEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022810 65 HTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~-~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~--~~~D~v~~~~~l~ 141 (291)
.+|.|+|-|-=. .+..|+++ |+.++++|+++. ++. ..++++..|+.+.... ...|+|.|.-+-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~----~g~~~v~DDitnP~~~iY~~A~lIYSiRpp- 80 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP----EGLRFVVDDITNPNISIYEGADLIYSIRPP- 80 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc----ccceEEEccCCCccHHHhhCccceeecCCC-
Confidence 499999988543 56666666 899999999886 111 2578999999886655 678888886432
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
++....+-++.+. -|..+++...+
T Consensus 81 --pEl~~~ildva~a--Vga~l~I~pL~ 104 (129)
T COG1255 81 --PELQSAILDVAKA--VGAPLYIKPLT 104 (129)
T ss_pred --HHHHHHHHHHHHh--hCCCEEEEecC
Confidence 3333444444443 34456665443
No 369
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.85 E-value=1.2 Score=39.33 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCCC
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~----~~~~~~~ 130 (291)
....+.++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++ .+.+.+ .....+.. .......
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCC
Confidence 345667888999998874 77777788776 8899999888887665533 232211 11111111 1111245
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+++.... -...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 898886521 134567788899999997754
No 370
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.84 E-value=1.5 Score=38.86 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc-------ccCCc
Q 022810 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD-------ISTFE 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d-------~~~~~ 126 (291)
....+.++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++ .+.+.+ .....+ +....
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455677899999888764 66777778776 666 8999888876665543 233211 111111 11111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+|+|+..... ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 11458988864321 235777888999999977543
No 371
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.79 E-value=1.5 Score=40.81 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=49.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------------
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------------- 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--------------- 127 (291)
..+++|+-||.|.+..-+... |. .|.++|+++.+.+.-+.|.... +....+.+|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhh
Confidence 569999999999999998766 54 5678999999777666654211 123344556655431
Q ss_pred --C-CCccEEEEccccc
Q 022810 128 --E-ASYDRIYSIEMFE 141 (291)
Q Consensus 128 --~-~~~D~v~~~~~l~ 141 (291)
. ..+|+++..++-+
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 1 2578888766543
No 372
>PLN02827 Alcohol dehydrogenase-like
Probab=89.73 E-value=3 Score=37.63 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=58.3
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cccC-Cc--cC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DIST-FE--ME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~----d~~~-~~--~~ 128 (291)
...+.++.+||-.|+| .|..+..+++.. +. .|+++|.++...+.+++ .|.+.+ +-.. ++.. +. ..
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~----lGa~~~-i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKT----FGVTDF-INPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCcEE-EcccccchHHHHHHHHHhC
Confidence 3456789999999886 455666677665 66 58899988886665543 344211 1111 1111 00 01
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~ 166 (291)
+.+|+|+-... ....+....+.|++| |++++.
T Consensus 262 ~g~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVG------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCC------ChHHHHHHHHhhccCCCEEEEE
Confidence 35788775321 133567778888998 998764
No 373
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.73 E-value=3.4 Score=37.72 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
..+.+|+=+|+|. |......++.+ +++|+++|.++.....+. ..|. .+ .+.++. -...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~----~~G~---~v--~~leea--l~~aDVVItaT-- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAA----MDGF---RV--MTMEEA--AKIGDIFITAT-- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHH----hcCC---Ee--CCHHHH--HhcCCEEEECC--
Confidence 4789999999995 55555555555 889999998886432222 2232 22 222221 14579987642
Q ss_pred cccccHHHHHH-HHHhccccCeeEEEEe
Q 022810 141 EHMKNYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~-~~~~~L~pgG~l~i~~ 167 (291)
....++. .....+|+|++++...
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEEC
Confidence 2244554 4778899999887653
No 374
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.60 E-value=1.1 Score=34.75 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=31.9
Q ss_pred EEcCCcc--hHHHHHH--HHCCCCEEEEEcCCHHHHHHHHHH--HHHhCC-CCeEEEEccc
Q 022810 69 DVGCGWG--SLSLYIA--QKYSNCKITGICNSKTQKEFIEEQ--CRVLEL-QNVEIIVADI 122 (291)
Q Consensus 69 DiGcG~G--~~~~~l~--~~~p~~~v~~vD~s~~~~~~a~~~--~~~~~~-~~i~~~~~d~ 122 (291)
|||++.| .....+. ...++.+|+++|+++..++..+.+ +..+.. ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6666553 345678999999999999988888 444322 1355554443
No 375
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=89.46 E-value=1.4 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=51.6
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l~~~~ 144 (291)
+|| +-||.|..+..++++ .++.+++.|+ .+++......+.+.. ..+|+|+..+
T Consensus 2 ~Il-l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~~~~Dvill~P------ 55 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILAP------ 55 (99)
T ss_pred EEE-EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHHHHhccCCCEEEEcC------
Confidence 344 567888766666655 5666777787 577777777665544 6789888874
Q ss_pred cHHHHHHHHHhccccCeeEEEE
Q 022810 145 NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 145 ~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...-.+.++.+.+.+.|+-+..
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEE
Confidence 3455677788888888775443
No 376
>PRK13699 putative methylase; Provisional
Probab=89.34 E-value=0.38 Score=40.24 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred EEEEccccCC--ccC-CCccEEEEcccccc---------c------ccHHHHHHHHHhccccCeeEEEE
Q 022810 116 EIIVADISTF--EME-ASYDRIYSIEMFEH---------M------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 116 ~~~~~d~~~~--~~~-~~~D~v~~~~~l~~---------~------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++++|+.+. ..+ +++|+|+..++..- + .-....+.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677787664 233 78999999887631 0 01246789999999999988763
No 377
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.23 E-value=0.81 Score=41.38 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=50.1
Q ss_pred hCCCCeEEEEccccCCcc---CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022810 110 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 110 ~~~~~i~~~~~d~~~~~~---~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
.++++++++.+++.+... ++++|.++......+++ ...+.++.+.+.++|||++++-....
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 345789999999988542 38999999999999984 56779999999999999999865543
No 378
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.16 E-value=3.9 Score=36.71 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc----ccCCc---c
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----ISTFE---M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d----~~~~~---~ 127 (291)
+...++++.+||=+|+| .|..+..+++.. +. +|+++|.+++.++.+++ .|.+. .+...+ ..... .
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK----FGATD-CVNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCE-EEcccccchHHHHHHHHHh
Confidence 44566789999999876 455666677766 67 79999999987766543 34321 111111 11100 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
.+.+|+|+-... ....+....+.|+++ |.++...
T Consensus 254 ~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 254 DGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence 135888875321 134667778889887 8877643
No 379
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.10 E-value=2.4 Score=37.42 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccC-Cc--cCC
Q 022810 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~-d~~~-~~--~~~ 129 (291)
+...+.++.+||=.|+ |.|..+..+++.. |.++++++.+++..+.+++. .|.+.+ ..... +..+ .. ...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 3456778999999986 4677888888876 88999999888766555432 343221 11111 1111 00 114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+-.. . ...+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNV-----G--GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCcEEEEe
Confidence 578887531 1 24577888999999998764
No 380
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.06 E-value=5.2 Score=35.64 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc-------cCCccCCCc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI-------STFEMEASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~-------~~~~~~~~~ 131 (291)
.++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.++ +.+.+.+ .....+. ........+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 378889888875 355666677666 67 8999998887655443 3344221 1111111 111112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+-... ....+....+.|+++|.++...
T Consensus 251 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 98885421 1245677788999999987643
No 381
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.87 E-value=1.4 Score=39.35 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=65.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~ 133 (291)
.++..+|.+|+|..|-.|.-+.+++...+ ..++.++|.+....+..++..+..|.+.+....+|+...+.+ .....
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 35567889999999999999999887653 578999999999999999999999887788889998875333 34455
Q ss_pred EEEcccc
Q 022810 134 IYSIEMF 140 (291)
Q Consensus 134 v~~~~~l 140 (291)
|++.++.
T Consensus 288 iL~Dpsc 294 (413)
T KOG2360|consen 288 ILVDPSC 294 (413)
T ss_pred EEeCCCC
Confidence 6665543
No 382
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.76 E-value=0.5 Score=37.46 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=53.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc---------------cC--
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI---------------ST-- 124 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~---------------~~-- 124 (291)
++.+|+=+|.| .|.-+..++... +++++.+|..+..++... ......+.+...+- ..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLE----SLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHH----HTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhh----cccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 56899999999 467777777777 899999999887554433 22221222211000 00
Q ss_pred --CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 125 --FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 125 --~~~~-~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
+... ..+|+|+.+..+..-..+.-+-++..+.|+||..++
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 0001 458998887665333334445556677788776543
No 383
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.73 E-value=2 Score=37.59 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=59.3
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEE-EccccCCccCCCccEE
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEII-VADISTFEMEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~-~~d~~~~~~~~~~D~v 134 (291)
..++.||.+|-=+|.| .|.++..+++.. +.+|+++|-+...-+. .++..|.+. +.+. ..|.-.- ..+..|.+
T Consensus 176 ~~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkee---a~~~LGAd~fv~~~~d~d~~~~-~~~~~dg~ 250 (360)
T KOG0023|consen 176 RSGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEE---AIKSLGADVFVDSTEDPDIMKA-IMKTTDGG 250 (360)
T ss_pred HcCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHH---HHHhcCcceeEEecCCHHHHHH-HHHhhcCc
Confidence 3456688888777754 799999999988 8999999998754333 333344422 1111 1111110 01334443
Q ss_pred EEccc-ccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEM-FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~-l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+-.-+ + ....+..+.+.||++|.+++...
T Consensus 251 ~~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 251 IDTVSNL-----AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred ceeeeec-----cccchHHHHHHhhcCCEEEEEeC
Confidence 32111 1 13346667788999999877544
No 384
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.64 E-value=3 Score=38.11 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEEc-CC-cchHHHHHHHHCC-C-CEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEc----cccC--
Q 022810 59 SRLEDGHTVLDVG-CG-WGSLSLYIAQKYS-N-CKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVA----DIST-- 124 (291)
Q Consensus 59 ~~~~~~~~vLDiG-cG-~G~~~~~l~~~~p-~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~i~~~~~----d~~~-- 124 (291)
..++++.+||=+| +| .|..+..+++... + .+|+++|.++..++.+++..... |. ...++.. +...
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHH
Confidence 4567788999887 34 6777887887641 2 37999999999888877642111 21 1111211 1111
Q ss_pred --CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 125 --FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 125 --~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
......+|+|+.... ....+....+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 111135888876321 135677788889988876553
No 385
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.59 E-value=3.4 Score=36.09 Aligned_cols=117 Identities=8% Similarity=0.051 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCc
Q 022810 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~ 126 (291)
+.++..+...-...-..|+-||||--.-+-.+-.. ++.+|.=+|. |+.++.=++.+++.+. ...+.+..|+.+..
T Consensus 79 r~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~d 156 (297)
T COG3315 79 RYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDD 156 (297)
T ss_pred HHHHHHHHHHHHhcccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccc
Confidence 34455544332223578999999854433333221 1467888887 6677776667776664 25889999998432
Q ss_pred c----------CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022810 127 M----------EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~----------~~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
. ....-++++-+++.+++ ...+++..+.....||..+++...
T Consensus 157 w~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 157 WPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred hHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 1 13345788888888883 467799999999989988877654
No 386
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.58 E-value=6.8 Score=35.07 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc--ccC-Cc--cC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD--IST-FE--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d--~~~-~~--~~ 128 (291)
+...+.++.+||=+|+| .|..+..+++.. +. +|+++|.++...+.+++ .+.+.+ .....+ ..+ .. ..
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC
Confidence 34566789999999886 455666677766 66 79999999887666643 343211 111100 000 00 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
..+|+|+-... ....+....+.|+++ |.+++..
T Consensus 253 ~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTG------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCC------ChHHHHHHHHhcccCCCEEEEEc
Confidence 35888875321 134567778888885 8877653
No 387
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.21 E-value=2.8 Score=36.74 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=55.2
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccccCCccCCCccEEEEc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~D~v~~~ 137 (291)
++|+=+|+|. | .++..|++. +..|+.++-+.+.++..++. .|+ ................+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 5799999983 4 456666654 78899999877655544431 122 0101111111111111578988764
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
-=- .+....++.+...+.++..++...
T Consensus 78 vK~---~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 78 CKA---YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred CCH---HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 322 135678888999999988766543
No 388
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.10 E-value=2.5 Score=36.59 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022810 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
...+..++.. ...++..|||.-+|+|..+....+. +..++|+|+++..++.+.++....
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 4455566655 5568999999999999999988876 889999999999999999988754
No 389
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.03 E-value=2.9 Score=33.56 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=53.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc----------CCC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM----------EAS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~---~~i~~~~~d~~~~~~----------~~~ 130 (291)
...|+.||||-=.....+....++.+++-+|. |+.++.-++.+.+.+. .+.+++.+|+.+... +..
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34899999998888888877555678888887 5566665666555432 135678999886321 134
Q ss_pred ccEEEEcccccccc--cHHHHHHH
Q 022810 131 YDRIYSIEMFEHMK--NYQNLLKK 152 (291)
Q Consensus 131 ~D~v~~~~~l~~~~--~~~~~l~~ 152 (291)
.-++++-+++.+++ ....+++.
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHH
Confidence 55788888888884 33444443
No 390
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.97 E-value=11 Score=32.97 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~l 140 (291)
.+.+|+=+|+|. |......++.. +++|+++|.++...+.+ ...+. +++ +..++... ..+|+|+..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~----~~~G~---~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARI----TEMGL---SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH----HHcCC---eee--cHHHHHHHhCCCCEEEECCCh
Confidence 588999999984 44444444444 78999999998754333 33333 222 12222111 578999985322
Q ss_pred cccccHHHHHHHHHhccccCeeEE
Q 022810 141 EHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.-+-+.+.+.++||++++
T Consensus 221 ------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 ------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred ------hhhhHHHHHcCCCCcEEE
Confidence 123345667788887654
No 391
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.92 E-value=6.4 Score=35.80 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=61.6
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccC----CccC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~~~----~~~~ 128 (291)
...+.++.+||=.|+| .|..+..+++.. +.+ ++.+|.++..++.+++ .|.+ .+... +..+ ....
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCC
Confidence 3556788888888886 466666777765 555 6667888876666554 3442 12111 1111 1111
Q ss_pred CCccEEEEcccccc-------c-ccHHHHHHHHHhccccCeeEEEEee
Q 022810 129 ASYDRIYSIEMFEH-------M-KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~v~~~~~l~~-------~-~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
..+|+|+-.--... . .+....++...+.+++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 45888875332110 0 1223578888899999999887554
No 392
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.86 E-value=13 Score=32.46 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~ 135 (291)
....+.++.+||=.||| .|..+..+++.. +.++++++.+++..+.++ ..|.+ .++.. ... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~----~~g~~--~~~~~--~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAR----ELGAD--WAGDS--DDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHH----HhCCc--EEecc--Ccc-CCCcccEEE
Confidence 44556778888888876 234445555554 789999998887555553 23431 11111 111 124588877
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.... ....+..+.+.|+++|.++...
T Consensus 231 ~~~~------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAP------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence 5321 1246888899999999988643
No 393
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.79 E-value=7.8 Score=32.21 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
++.++|=.|+ +|.++..+++.+ .+.++++++.++.......+.....+ .++.++.+|+.+...- +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678887775 455555554432 27899999988776665555544433 2688889998764310 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
+.|.|+.+..
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6798887653
No 394
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.78 E-value=4.1 Score=35.35 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=61.1
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~i~~~~~d~~~~ 125 (291)
.+|-=||+|+ +..+..++.. |.+|+.+|.+++.++.+++++.+. +. .+++ ...|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 4788899984 3344455544 899999999999998877654321 11 1122 12333221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeec
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~ 169 (291)
...|+|+-. +.+..+-...++..+.+.+ +|+.++.-.+..
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 457888765 4444455567888888888 677766554443
No 395
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.65 E-value=3.6 Score=36.35 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hCC------CCeEEEEccccCCccC
Q 022810 64 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL------QNVEIIVADISTFEME 128 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~-------~~~------~~i~~~~~d~~~~~~~ 128 (291)
-.+|-=||+|+ ...+..++.. |.+|+..|.+++.++.++..+.. .+. .++++. .++.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a--v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC--V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH--h
Confidence 35788999984 2344455544 89999999999987766554331 111 122221 122111 1
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...|+|+-. +.+.+.-...+++++.+.++|+.++.-.+
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 456887764 33444445678899999999987544433
No 396
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.59 E-value=2.3 Score=37.50 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---cc---CCccCC
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---IS---TFEMEA 129 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---~~---~~~~~~ 129 (291)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.++ ..+.. .++..+ .. ......
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~--~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGAD--DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCC--EEecCccccHHHHHHHhCCC
Confidence 44567888999998764 66777777765 676 999998887655543 23331 111111 11 111113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+... .....+..+.+.|+++|.++..
T Consensus 227 ~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 227 GADLVIEAA------GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCEEEECC------CCHHHHHHHHHHhhcCCEEEEE
Confidence 589888641 1134667788899999997664
No 397
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.55 E-value=6.8 Score=31.38 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=60.0
Q ss_pred EEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccCCc
Q 022810 66 TVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~i~~~~~d~~~~~ 126 (291)
+|.=||+|+=+ ++..++.. |.+|+.+|.+++.++.+++.+... + ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 46668887532 33344443 899999999999998888766541 1 12344 34555443
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...|+|+=. +.+.++-..++++++.+.+.|+-+|.-.+.+
T Consensus 77 --~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 --VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 256877754 2445566788999999999999987765544
No 398
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=87.54 E-value=4.1 Score=36.80 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHH-HHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEcc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~-~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~ 138 (291)
.++.+||-.|+| .|..+..+++.. +.++++++.+++. .+. +++.|.+.+ +...+...... ...+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~----a~~lGa~~~-i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREA----IDRLGADSF-LVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHH----HHhCCCcEE-EcCcCHHHHHHhhCCCcEEEECC
Confidence 478899999886 466777777776 7889999877543 222 233444211 11111111100 03478777532
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEE
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
. ....+....+.++++|.++..
T Consensus 251 G------~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 251 S------AEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C------cHHHHHHHHHhhcCCCEEEEE
Confidence 1 234567778889999998764
No 399
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.46 E-value=3.1 Score=36.08 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=57.3
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CC--------------CCeEEEEccccCCc
Q 022810 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---EL--------------QNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~---~~--------------~~i~~~~~d~~~~~ 126 (291)
+|.=||+|. +..+..+++. +.+|+.+|.+++.++.+.+..... +. .++++ ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh-
Confidence 678888873 2344455544 789999999999988876543211 10 01221 2222211
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
-...|+|+..-+ ....-...++.++.+.++|+.++.+.+.+
T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 145798886533 22222356778888888888766554443
No 400
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.42 E-value=9.7 Score=33.74 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
++.+||=.|++. .++..+++.+ .+.+|+.++.++..++...+.+...+. ++.++.+|+.+... . +
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 356788887654 4444443322 278999999988877766666655554 67888899876421 0 4
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68998877643
No 401
>PLN02494 adenosylhomocysteinase
Probab=87.34 E-value=3.2 Score=38.56 Aligned_cols=99 Identities=7% Similarity=-0.010 Sum_probs=58.2
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022810 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~ 129 (291)
++.+++..+. ..+.+|+-+|+|. |......++.+ +.+|+++|.++.....+ ...|. .+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA----~~~G~---~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQA----LMEGY---QVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHH----HhcCC---eec--cHHHHH--h
Confidence 3444444333 4689999999984 54444444445 78999999988643222 22232 221 222211 4
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..|+|+....- ..-+.....+.||+||+++...
T Consensus 309 ~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 309 EADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred hCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcC
Confidence 57999873221 2223467778899999987753
No 402
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=87.16 E-value=14 Score=33.49 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=62.0
Q ss_pred HHcCCCCCCEEEEEcCCcch----HHHHHHHHC---CCCEEEEEcC----CHHHHHHHHHHHH----HhCCCCeEEEEc-
Q 022810 57 ERSRLEDGHTVLDVGCGWGS----LSLYIAQKY---SNCKITGICN----SKTQKEFIEEQCR----VLELQNVEIIVA- 120 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~---p~~~v~~vD~----s~~~~~~a~~~~~----~~~~~~i~~~~~- 120 (291)
+.+.-.+...|+|+|.|.|. +...|+.+- |..++|+|+. +...++.+.+++. ..|+ ..+|...
T Consensus 104 eA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~v~ 182 (374)
T PF03514_consen 104 EAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHPVV 182 (374)
T ss_pred HHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEecc
Confidence 33444566789999999995 334444432 4469999999 7777777666543 3455 4555442
Q ss_pred --cccCCccC----CCccEEE--Eccccccccc--------HHHHHHHHHhccccCeeEEEE
Q 022810 121 --DISTFEME----ASYDRIY--SIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 121 --d~~~~~~~----~~~D~v~--~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+++++... .+=+.++ |...++++.+ ...+|+.++ .|+|.-++++.
T Consensus 183 ~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~vvv~~E 243 (374)
T PF03514_consen 183 VESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKVVVLVE 243 (374)
T ss_pred cCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCEEEEEe
Confidence 33333211 2222333 3445576631 234665555 58999766654
No 403
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.15 E-value=2.7 Score=37.16 Aligned_cols=95 Identities=18% Similarity=0.356 Sum_probs=58.8
Q ss_pred cCCCCC--CEEEEEcC--CcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------c
Q 022810 59 SRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 127 (291)
Q Consensus 59 ~~~~~~--~~vLDiGc--G~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------~ 127 (291)
..+.++ .+||=.|+ |.|..+..+++.. +. +|++++.+++..+.+++. .|.+. ++..+-.++. .
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~--vi~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDA--AINYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcE--EEECCCCCHHHHHHHHC
Confidence 345554 89998885 5778888888876 77 799999988766555442 34322 1111111110 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..+|+|+.... . ..+..+.+.|+++|.++..
T Consensus 222 ~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVG-----G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEE
Confidence 145888875321 1 2357778899999998764
No 404
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.09 E-value=13 Score=30.91 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCH-HHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK-TQKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~-~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.+.++|-.|+. |.++..+++.+ .+.+|++++.+. ...+......+..+. ++.++.+|+.+...-
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35688988864 34444444332 377888887653 223333333333332 577888998764310
Q ss_pred CCccEEEEccccccc-------------ccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~-------------~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|.|+.+...... .....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357888866532110 11345667777776666665553
No 405
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.06 E-value=8.3 Score=36.89 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=50.3
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHh-----CC---CCeEEEEccccCCcc
Q 022810 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM 127 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~i~~~~~d~~~~~~ 127 (291)
..+.+.+.+||-.|+. |.++..+++.+ .|.+|++++.+..........+... +. .++.++.+|+.+...
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3445577788887764 55555554432 3789999998877655443333221 11 257889999987431
Q ss_pred ---C-CCccEEEEccc
Q 022810 128 ---E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ---~-~~~D~v~~~~~ 139 (291)
. +..|+||++..
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 1 56899887653
No 406
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.01 E-value=1.9 Score=38.10 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCCc
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~~----~~~~~~~ 131 (291)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ .+.+. +.....+..+ ......+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 345678899998876 466777778776 64 78888887776555443 23211 1111111111 1111468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+++....- ...+....+.|+++|.++..
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988753211 24677888899999997654
No 407
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.92 E-value=5.2 Score=36.80 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+.+|+=+|+|. |......++.. +.+|+.+|.++.....+. ..|. .+ .++.+.. ...|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~----~~G~---~v--~~l~eal--~~aDVVI~aT--- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAA----MDGF---RV--MTMEEAA--ELGDIFVTAT--- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHH----hcCC---Ee--cCHHHHH--hCCCEEEECC---
Confidence 789999999984 44444444444 789999999886432221 2232 22 2222211 4689998742
Q ss_pred ccccHHHHHH-HHHhccccCeeEEEE
Q 022810 142 HMKNYQNLLK-KISKWMKEDTLLFVH 166 (291)
Q Consensus 142 ~~~~~~~~l~-~~~~~L~pgG~l~i~ 166 (291)
.....+. .....+|+|++++..
T Consensus 276 ---G~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 276 ---GNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred ---CCHHHHHHHHHhcCCCCCEEEEc
Confidence 2234555 677889999987664
No 408
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.67 E-value=13 Score=33.19 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccc
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-~~~~D~v~~~~~ 139 (291)
.++.+||-.|+| .|..+..+++.. +.++++++.+++....+. +..|.+. .+...+...+.. ...+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~---~~~Ga~~-~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEAL---EHLGADD-YLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH---HhcCCcE-EecCCChHHHHHhcCCCcEEEECCC
Confidence 578889888875 466677777766 788888888776443332 2234321 111111111110 134787765321
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....+..+.+.|+++|+++...
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEEC
Confidence 1346677788999999977643
No 409
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=86.54 E-value=6.1 Score=34.76 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCcc
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYD 132 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~D 132 (291)
.+...++.+||=.||| .|..+..+++.. +.++++++.+++..+.+++ .|.+. ++...-.+.. .. ..+|
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~--~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK----LGAHH--YIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----cCCcE--EecCCCccHHHHHHhcCCCC
Confidence 3466788899999975 455666667665 7899999998876665533 34321 1111111110 01 3478
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
+++.... ....+..+.+.|+++|.++...
T Consensus 231 ~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 231 LILATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEEECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 8875311 1346777888999999977643
No 410
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=86.51 E-value=5.3 Score=33.63 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
++.++|=.|+ +|.++..+++.+ .+.+|+.++.+....+.........+. ++.++.+|+.+...- +
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678898885 455555555442 278999999988776666555544433 677889998874211 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 67998887643
No 411
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.35 E-value=12 Score=32.38 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~-~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~----------- 128 (291)
.++++|-.|++.| ++..+++.+ .+.+|+.++.++. ..+.........+. ++.++.+|+.+...-
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888887543 333333322 2788988877642 23333333333332 678888998763210
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
...|+|+.+..
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 35798886653
No 412
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=86.30 E-value=2.8 Score=37.18 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC----CccCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~----~~~~~ 129 (291)
......++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .+.+.+ .....++.+ .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCC
Confidence 44566788899988865 355666667665 66 89999988887666543 343211 111111111 11113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+|+-.... ...++.+.+.|+++|.++...
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 48988864321 245677888999999976643
No 413
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=86.30 E-value=6.9 Score=33.24 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=52.3
Q ss_pred cCCCCCCEEEEEcCCcch----HHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccE
Q 022810 59 SRLEDGHTVLDVGCGWGS----LSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~----~~~~l~~~~p-~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~ 133 (291)
+..+.+++||-+|.|+-. -+..|.+-+| ++-++-.|+..-. . +--..+.+|...+..+.++|+
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v--------S----Da~~~~~~Dc~t~~~~~k~Dl 124 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV--------S----DADQSIVGDCRTYMPPDKFDL 124 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEESS-EEE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc--------c----ccCCceeccccccCCCCcccE
Confidence 345678999999998532 3444555565 4566677775431 1 123457899999888899999
Q ss_pred EEEccc---cccc-------cc-HHHHHHHHHhccccCeeEEEEee
Q 022810 134 IYSIEM---FEHM-------KN-YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 v~~~~~---l~~~-------~~-~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
|++..- ...+ .. ...+..-++..|+-||.+++...
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 999753 1111 11 23345556778999999988654
No 414
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.29 E-value=3.8 Score=33.12 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=61.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCc
Q 022810 53 ELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (291)
+.+........+.+||-+|.- +|.....+..+ ..+|+.+|+.|.+..... ++++|... .. ..++.+
T Consensus 34 ~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp--------~~v~Fr~~--~~-~~~G~~ 100 (254)
T COG4017 34 QAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP--------NNVKFRNL--LK-FIRGEV 100 (254)
T ss_pred HHhhhhhcccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC--------CCccHhhh--cC-CCCCce
Confidence 333333344578899999986 78887777766 789999999997532221 24555443 11 223789
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
|+|+-.--+..+. +++|++ ++| +++++.+|..
T Consensus 101 DlivDlTGlGG~~--Pe~L~~----fnp-~vfiVEdP~g 132 (254)
T COG4017 101 DLIVDLTGLGGIE--PEFLAK----FNP-KVFIVEDPKG 132 (254)
T ss_pred eEEEeccccCCCC--HHHHhc----cCC-ceEEEECCCC
Confidence 9999876665553 334433 445 4667776654
No 415
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.26 E-value=6.8 Score=33.77 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=57.9
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-------HHhCC-C---------CeEEEEccccCC
Q 022810 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL-Q---------NVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~-------~~~~~-~---------~i~~~~~d~~~~ 125 (291)
.+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++.+ .+.+. + ++++ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3678889983 4455556554 779999999999887655332 22221 1 2221 233222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
....|+|+..- -..+.-...+++++.+.++|+..+...+
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 14578888752 2222234578999999999888764433
No 416
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.24 E-value=7.5 Score=33.63 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=56.9
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--------CC----------CCeEEEEccccC
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------EL----------QNVEIIVADIST 124 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~i~~~~~d~~~ 124 (291)
.+|.=||+|.-. ++..+++. +.+|+.+|.+++.++.+++..... .. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 478888998533 34444443 789999999999888887653211 00 12222 233322
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
. -...|+|+..-+ ....-...+++++...++++.++..
T Consensus 81 a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 145688887533 2223356778888888877765544
No 417
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.13 E-value=7.8 Score=34.32 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~----~~~~~~ 129 (291)
....++++.+||-.|+| .|..+..+++.. +. .++++|.+++..+.+++ .|.+.+ .....+.. ......
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCC
Confidence 34566788999999876 456667777766 66 69999998876655543 343211 11111110 111114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+.... ....+..+.+.|+++|.++..
T Consensus 235 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 5888875321 134678888899999997754
No 418
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=85.64 E-value=5.6 Score=33.52 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=77.2
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCCCccEEEEcccccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~D~v~~~~~l~~ 142 (291)
|..=||+-.++..+.+. .-++.++|+.++-....++++. +..++++..+|-.. ++++++=-+|+..++++.
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 88899998888888766 6789999999998888887775 33479999998654 333466688999999988
Q ss_pred cccHHHHHHHHHhccc--cCeeEEEEeec
Q 022810 143 MKNYQNLLKKISKWMK--EDTLLFVHHFC 169 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~--pgG~l~i~~~~ 169 (291)
-.+++.+++.+.+.++ ++|+..|=.|.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 8888888888887776 68887774443
No 419
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.53 E-value=13 Score=32.73 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~~ 139 (291)
.++.+|+-+|+|. |.............+|+.++.++.... +.+...+. .... ..+.... ..+|+|++.-.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~---~la~~~g~---~~~~--~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE---ELAKELGG---NAVP--LDELLELLNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHcCC---eEEe--HHHHHHHHhcCCEEEECCC
Confidence 4688999999973 433333332322468999999876432 22223332 2222 1121111 46899998765
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022810 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 170 (291)
-.+. ...+..+....+.++.+++....+
T Consensus 248 ~~~~---~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 248 APHY---AKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred CCch---HHHHHHHHhhCCCCCeEEEEeCCC
Confidence 4332 333444433333356666654433
No 420
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=85.42 E-value=3.2 Score=35.44 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhc
Q 022810 77 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKW 156 (291)
Q Consensus 77 ~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~ 156 (291)
++..|.+..+..+|+|+|.++..++.++ +.|+ +.-...+.+.. ..+|+|+..-++. ....+++++...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~----~~g~--~~~~~~~~~~~---~~~DlvvlavP~~---~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL----ELGI--IDEASTDIEAV---EDADLVVLAVPVS---AIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH----HTTS--SSEEESHHHHG---GCCSEEEE-S-HH---HHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH----HCCC--eeeccCCHhHh---cCCCEEEEcCCHH---HHHHHHHHhhhh
Confidence 3567777766789999999999766554 3344 11112221111 4579998876653 345667777776
Q ss_pred cccCeeE
Q 022810 157 MKEDTLL 163 (291)
Q Consensus 157 L~pgG~l 163 (291)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 6666543
No 421
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.38 E-value=14 Score=30.62 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.++|=.|+ +|.++..+++.+ .+.+|++++.++...+.........+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3567887774 455555554432 27899999988765555444443322 256778888876531 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999986653
No 422
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.05 E-value=7 Score=33.87 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----------CC----------CCeEEEEccc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------EL----------QNVEIIVADI 122 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~i~~~~~d~ 122 (291)
.+|.=||+|. | .++..++.. +.+|+.+|.+++.++.+++...+. +. .++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4788899984 3 345555544 789999999999988766543321 11 01111 1222
Q ss_pred cCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022810 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 123 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
.. -...|+|+..- .........+++++.+.++|+.+++
T Consensus 81 ~~---~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ES---LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH---hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 14568887753 2222234678888888888887654
No 423
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=84.74 E-value=13 Score=33.54 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=57.8
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-----cc----cCCcc
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA-----DI----STFEM 127 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-----d~----~~~~~ 127 (291)
..+.++.+||=.|+| .|..+..+++.. +. ++++++.++...+.++ +.|.+.+ +... +. .....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~----~~g~~~~-v~~~~~~~~~~~~~v~~~~~ 272 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAK----EMGADYV-FNPTKMRDCLSGEKVMEVTK 272 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEE-EcccccccccHHHHHHHhcC
Confidence 356788899888876 345556666665 66 7999998887544443 3444221 1111 11 11111
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+... .+....+..+.+.|+++|.++..
T Consensus 273 g~gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 273 GWGADIQVEAA-----GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEE
Confidence 24589887542 22245677788889999998764
No 424
>PRK08324 short chain dehydrogenase; Validated
Probab=84.61 E-value=7.8 Score=38.10 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 129 (291)
++.+||-.|++ |.++..+++.+ .+.+|+++|.++...+.+....... .++.++.+|+.+... -+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45788888864 33333333321 2789999999987766554443322 367888888876321 03
Q ss_pred CccEEEEcccccccc-------------------cHHHHHHHHHhcccc---CeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMK-------------------NYQNLLKKISKWMKE---DTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~-------------------~~~~~l~~~~~~L~p---gG~l~i~~ 167 (291)
.+|+|+.+....... ....+++.+.+.+++ +|.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 689998876432210 023455666666665 57666543
No 425
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.45 E-value=16 Score=30.87 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.++++|-.|++. +.++..+++.+ .|.+|+.++.+....+.+++...+..-.++.++.+|+.+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999762 55555554432 378888886543222222222222211357788899876421 1
Q ss_pred CCccEEEEccc
Q 022810 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~v~~~~~ 139 (291)
++.|+++.+..
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56898887653
No 426
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.15 E-value=15 Score=31.03 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.++|-.|++. .++..+++.+ .|.+|+.++.++...+...+ ..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356888888644 4444443332 27899999988764443322 222 257888899876421 0 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887654
No 427
>PRK08703 short chain dehydrogenase; Provisional
Probab=83.98 E-value=8.4 Score=31.93 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------------
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------------- 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~-------------- 126 (291)
++.++|-.||+ |.++..+++.+ .+.+|++++.++...+.....+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 35789999864 44444444332 37899999998876665555544433224556667764321
Q ss_pred cCCCccEEEEccc
Q 022810 127 MEASYDRIYSIEM 139 (291)
Q Consensus 127 ~~~~~D~v~~~~~ 139 (291)
.....|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0035688887654
No 428
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.89 E-value=20 Score=30.60 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred EEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C-CCccEE
Q 022810 66 TVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-ASYDRI 134 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~-p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~-~~~D~v 134 (291)
.+|=-|+ |.++..+++.+ .+.+|++++.++..++.+.+.....+. ++.++.+|+.+... . +..|++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 45666666553 368899999887766555554444333 67788888876421 1 468998
Q ss_pred EEccccccc-cc-----------HHHHHHHHHhccccCeeEEE
Q 022810 135 YSIEMFEHM-KN-----------YQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 135 ~~~~~l~~~-~~-----------~~~~l~~~~~~L~pgG~l~i 165 (291)
+.+..+... .+ .-.+++.+.+.++++|..++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 887654321 11 12244555555666665433
No 429
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=83.65 E-value=12 Score=32.87 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=57.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC--ccCCCccE
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EMEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~--~~~~~~D~ 133 (291)
..+...++.+||=.||| .|..+..+++.. +.++++++.+++..+.+++ .+.+. ++...-.+. .....+|+
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALK----LGADE--FIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcE--EecCcchhhhhhccCCceE
Confidence 33456778888878874 455566666665 7899999998876665532 33321 111110010 11256888
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+....- ...+..+.+.|+++|.++...
T Consensus 236 v~~~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence 8753221 124567778889999877643
No 430
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.62 E-value=8.1 Score=32.12 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C--C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~--~ 129 (291)
++.++|-.|++ |.++..+++.+ .+.+|+.++.++..++.+.+.....+. ++.++.+|+.+... . +
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46789988864 44444443322 278999999988766665555544433 67788888765321 0 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
+.|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5799988654
No 431
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.59 E-value=6.6 Score=32.75 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~------------~ 127 (291)
.++.+||=.|+ +|.++..+++.+ .+.+|++++.++...+...+.+...+..++.++.+|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 36778998886 455554444332 27899999998876665555554444345677777775321 1
Q ss_pred C-CCccEEEEccc
Q 022810 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~v~~~~~ 139 (291)
. ++.|.|+.+..
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1 46899887653
No 432
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.55 E-value=2.2 Score=36.14 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022810 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
++..+++.++..+..+++|+-||+|..+..+... +.+|+.-|+++..+...+..++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHHHHHhc
Confidence 3455666555436789999999999999988764 78999999999988877755544
No 433
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=83.47 E-value=3.6 Score=36.89 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccC
Q 022810 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-------~~~~ 128 (291)
...+.++.+||-.|+|. |..+..+++.. +. .+++++.++...+.+++ .+.+ .++..+-.. .. .
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREIT-G 252 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHh-C
Confidence 34566788999988763 66677777776 66 69999999886655543 3331 111111111 11 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
..+|+|+-... ....+..+.+.|+++|.++..
T Consensus 253 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDTTG------VPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEECCC------CcHHHHHHHHHhccCCEEEEe
Confidence 45888875321 124577888889999997764
No 434
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.22 E-value=4.9 Score=38.89 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=55.8
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
.+|+=+|+| ..+..+++.. .+.+++.+|.+++.++.+++ . ...++.+|..+.. .. ++.|.+++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 356666655 4544444321 27799999999998776653 2 3568899998753 12 577887774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
..- -. ....+-...+.+.|...++...-+
T Consensus 472 ~~d--~~-~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 472 CNE--PE-DTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred eCC--HH-HHHHHHHHHHHHCCCCeEEEEeCC
Confidence 321 11 122233334557788887775443
No 435
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.10 E-value=15 Score=30.94 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=46.2
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-CCc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-ASY 131 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~~~ 131 (291)
.+||-.|+ +|.++..+++.+ .+.+|++++.++...+.+.+.....+. ++.++.+|+.+... . +..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46776665 445555554332 378999999987766655554444432 67888899877431 0 367
Q ss_pred cEEEEccc
Q 022810 132 DRIYSIEM 139 (291)
Q Consensus 132 D~v~~~~~ 139 (291)
|.|+.+..
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 99887754
No 436
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.01 E-value=6.7 Score=30.56 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=54.7
Q ss_pred EEEEEcCCcchHHHH--HHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----C---CCeEEEEccccCCccCCCccEEEE
Q 022810 66 TVLDVGCGWGSLSLY--IAQKYSNCKITGICNSKTQKEFIEEQCRVLE----L---QNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~--l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~----~---~~i~~~~~d~~~~~~~~~~D~v~~ 136 (291)
+|.=||+|.+..+.. ++.+ +.+|+....+++.++..++.-.... . +++.+ ..|..+.. ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEe
Confidence 466789987665443 3433 7899999999987777665432111 1 12332 33332211 55788887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEE
Q 022810 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
.-+-. ..+.+++++...++++-.+++
T Consensus 76 avPs~---~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 76 AVPSQ---AHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -S-GG---GHHHHHHHHTTTSHTT-EEEE
T ss_pred cccHH---HHHHHHHHHhhccCCCCEEEE
Confidence 55443 347889999999977776665
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.65 E-value=6.3 Score=33.97 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=50.0
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022810 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~~~ 143 (291)
+|.=||+|. |.++..+.+. +.+|+++|.++..++.+.+ .+. +.....+.. .....|+|+..-+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~~---~~~~aDlVilavp~~~- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE----RGL--VDEASTDLS---LLKDCDLVILALPIGL- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CCC--cccccCCHh---HhcCCCEEEEcCCHHH-
Confidence 567788873 4456666554 7799999999987655543 232 111111211 1146799888765432
Q ss_pred ccHHHHHHHHHhccccCeeE
Q 022810 144 KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 144 ~~~~~~l~~~~~~L~pgG~l 163 (291)
...+++++...++|+.++
T Consensus 70 --~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 --LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHhCCCCcEE
Confidence 345677777777776433
No 438
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=82.57 E-value=18 Score=31.90 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=57.5
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccc----cCCccCCC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI----STFEMEAS 130 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~----~~~~~~~~ 130 (291)
.....++.+||=.|+| .|..+..+++.. + .++++++.++...+.+++ .+.+. +.....+. ........
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence 3455678888888775 344555666665 6 789999988876555442 34321 11111111 11111146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+... .. ...+..+.+.|+++|.++..
T Consensus 236 ~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 236 VDVVIEAV-----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCEEEECC-----CC-HHHHHHHHHhccCCcEEEEe
Confidence 89887532 11 33577788999999997654
No 439
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.55 E-value=19 Score=33.06 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=52.9
Q ss_pred CEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---------------HHHhCCCCeEEEEccccCCcc
Q 022810 65 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---------------CRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 65 ~~vLDiGcG~G--~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~i~~~~~d~~~~~~ 127 (291)
++|.=||.|.- .++..|++. |.+|+++|.++..++..+.. ....| ..... .+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~~----- 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TTP----- 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-ccc-----
Confidence 46888888843 344455555 78999999999977653210 00011 11111 111
Q ss_pred CCCccEEEEccccc-------ccccHHHHHHHHHhccccCeeEEEEe
Q 022810 128 EASYDRIYSIEMFE-------HMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~-------~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
...|+|+..-+-. .+......++.+...|++|.++++.+
T Consensus 74 -~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 74 -EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred -ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 2468887654431 22344566778888888877665543
No 440
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.14 E-value=20 Score=31.26 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC----CCccEEE
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME----ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~-~~i~~~~~d~~~~~~~----~~~D~v~ 135 (291)
.+++||-.| |+|.++..+++.+ .+.+|+++..++.............+. .++.++.+|+.+...- ...|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 357888887 4566666665543 367887776555433222222111122 3688899999875311 4579888
Q ss_pred Ecccc
Q 022810 136 SIEMF 140 (291)
Q Consensus 136 ~~~~l 140 (291)
.+...
T Consensus 83 h~A~~ 87 (325)
T PLN02989 83 HTASP 87 (325)
T ss_pred EeCCC
Confidence 76643
No 441
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.75 E-value=11 Score=32.66 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=51.9
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE---E-EEcc-ccCCccCCCccEEEEc
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE---I-IVAD-ISTFEMEASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~---~-~~~d-~~~~~~~~~~D~v~~~ 137 (291)
++|+=+|+|. | .++..|++. +.+|+.++.+++.++..++ .+. ++. . .... ..+......+|+|+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vila 73 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGL-RLEDGEITVPVLAADDPAELGPQDLVILA 73 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCC-cccCCceeecccCCCChhHcCCCCEEEEe
Confidence 3688899984 2 244445543 6799999987766554432 233 110 0 0000 1111111578988876
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-.-. +...+++.+...+.++..++..
T Consensus 74 ~k~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 74 VKAY---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cccc---cHHHHHHHHhhhcCCCCEEEEe
Confidence 4432 4567888888888777665543
No 442
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=81.73 E-value=5.5 Score=35.26 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred HHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cccCCc--
Q 022810 54 LYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DISTFE-- 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~----d~~~~~-- 126 (291)
.++...+.+++.+|.-+||| .|..++.-++.....+++++|+++.-++.|++ .|. ..++.. |+-+..
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGA--T~~vn~~~~~~vv~~i~~ 249 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGA--THFVNPKEVDDVVEAIVE 249 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCC--ceeecchhhhhHHHHHHH
Confidence 34455667899999999998 46666666666645689999999998777765 333 112211 111110
Q ss_pred -cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 127 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
.+...|.++- ...+ ...++.....+.++|..++.-..
T Consensus 250 ~T~gG~d~~~e-----~~G~-~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 250 LTDGGADYAFE-----CVGN-VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred hcCCCCCEEEE-----ccCC-HHHHHHHHHHHhcCCeEEEEecC
Confidence 1124555532 2222 23667777777779987775443
No 443
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=81.62 E-value=7.2 Score=28.25 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=48.0
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEcccccc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~---~~~D~v~~~~~l~~ 142 (291)
+|| +-||+|..+..++++ .++.+++.|+ .+.+...+..+.... ..+|+|++.+
T Consensus 3 kIL-lvCg~G~STSlla~k------------------~k~~~~e~gi-~~~i~a~~~~e~~~~~~~~~~DvIll~P---- 58 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK------------------TTEYLKEQGK-DIEVDAITATEGEKAIAAAEYDLYLVSP---- 58 (104)
T ss_pred EEE-EECCCchHHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhhccCCCCEEEECh----
Confidence 455 669999877766655 4556666777 577777776654321 4689999874
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022810 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
+..-.+.++...+.+.|+-+.
T Consensus 59 --Qi~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 59 --QTKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred --HHHHHHHHHHHHhhhcCCCEE
Confidence 334456677777766665333
No 444
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.54 E-value=25 Score=30.41 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=57.6
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~i~~~~~d~~~~ 125 (291)
.+|.=||+|.-. ++..++.. +.+|+.+|.+++.++.+.+..... +. .++++ ..|....
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHHh
Confidence 578889998433 44445544 789999999999888765433221 21 12332 2233221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
...|+|+..-+ ....-...+++.+...++|+.+++..+.
T Consensus 82 ---~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 82 ---ADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred ---cCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 45788877522 1112245678888888999887654333
No 445
>PRK06128 oxidoreductase; Provisional
Probab=81.36 E-value=31 Score=29.79 Aligned_cols=102 Identities=11% Similarity=0.074 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH--HHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~--~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++ |.++..+++.+ .+.+|+.+..+.. ..+...+.....+. ++.++.+|+.+... .
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 46788888864 44444444332 2778877665432 22223333333333 57788899876421 0
Q ss_pred -CCccEEEEcccccc----cc-----c-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEH----MK-----N-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~----~~-----~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|+++.+..... +. + .-.+++.+.+.++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 46899998765421 11 1 123555666677778876654
No 446
>PRK07454 short chain dehydrogenase; Provisional
Probab=81.31 E-value=13 Score=30.87 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~------~ 129 (291)
...++|-.|+ +|.++..+++.+ .+.+|++++.++...+...+..+..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567888885 455555554432 27799999998876655544444333 268888999877431 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|.++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876643
No 447
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=81.30 E-value=5.8 Score=35.42 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cc----cCCccC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DI----STFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~---d~----~~~~~~ 128 (291)
...+.++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.++ ..+.+ .++.. +. ......
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~~~ 249 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLTDG 249 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHcCC
Confidence 3456778899988875 466677777765 665 999988888665543 23331 11211 11 111112
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|+++....- ...+..+.+.|+++|.++...
T Consensus 250 ~~vd~vld~~~~------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVGR------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCCC------hHHHHHHHHHhhcCCeEEEEe
Confidence 458988753211 245677888899999987643
No 448
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.30 E-value=20 Score=27.38 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=50.3
Q ss_pred EEEEcCCc-chH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---------ccCCc--cCCCccE
Q 022810 67 VLDVGCGW-GSL-SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---------ISTFE--MEASYDR 133 (291)
Q Consensus 67 vLDiGcG~-G~~-~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d---------~~~~~--~~~~~D~ 133 (291)
|+=+|+|. |.+ +..|++ .+.+|+.+.-++ ..+. .++.++ ++...+ ..... ....+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~----~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEA----IKEQGL---TITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHH----HHHHCE---EEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHh----hhheeE---EEEecccceecccccccCcchhccCCCcE
Confidence 45577762 433 333433 388999999877 4433 233332 222221 11111 1278999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+..--- .+....++.+...+.|+..+++.
T Consensus 71 viv~vKa---~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 71 VIVAVKA---YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EEE-SSG---GGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEEEecc---cchHHHHHHHhhccCCCcEEEEE
Confidence 9876422 24577899999999999877664
No 449
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=80.87 E-value=2 Score=34.39 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
.+.+|.=+|+| .|......++.+ +.+|+++|.+..... ..... .+ ...++.++. ...|+|+...++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~----~~~~~---~~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEE----GADEF---GV--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHH----HHHHT---TE--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhh----hcccc---cc--eeeehhhhc--chhhhhhhhhccc
Confidence 58899999997 355444455556 899999999987443 12221 12 233444432 4579988876652
Q ss_pred ccccHHH-HHHHHHhccccCeeEE
Q 022810 142 HMKNYQN-LLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~-~l~~~~~~L~pgG~l~ 164 (291)
. .... +=++..+.||+|.+|+
T Consensus 103 ~--~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 103 P--ETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp T--TTTTSBSHHHHHTSTTTEEEE
T ss_pred c--ccceeeeeeeeeccccceEEE
Confidence 1 1111 1234456778877654
No 450
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=80.83 E-value=16 Score=32.24 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEE-ccccC-Cc--cCCCc
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIV-ADIST-FE--MEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~-~~~-~d~~~-~~--~~~~~ 131 (291)
...+.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.++ +.|.+.+- ... .+... +. ..+.+
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELAR----ELGAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchhHHHHHHHHhCCCC
Confidence 3456678899988875 455666677665 889999999888766653 23432111 111 11111 00 01268
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+|+..-. . ...+....+.|+++|.++..
T Consensus 235 d~vi~~~g-----~-~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 235 HVSVDALG-----I-PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Confidence 88876421 1 34567788889999987653
No 451
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=80.63 E-value=18 Score=31.38 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=55.7
Q ss_pred CEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------HhCC----------CCeEEEEccccCC
Q 022810 65 HTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~-------~~~~----------~~i~~~~~d~~~~ 125 (291)
.+|.=||+|. | .++..++.. +.+|+++|.+++.++.+++.+. +.+. .++. ...+.+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHHh
Confidence 4688889883 2 344445544 7899999999998876655432 1111 0111 12222111
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 165 (291)
...|+|+..- .+.......++.++.+.++|+.+++.
T Consensus 82 ---~~aD~Vieav-~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 82 ---RDADFIIEAI-VESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ---CCCCEEEEcC-ccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 4568888752 22233456678888888888876553
No 452
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=6.9 Score=34.91 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEE---EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITG---ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~p~~~v~~---vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~ 126 (291)
+..++|+|||-|.++.+++...+...++. +|-....+..=+.....+.. .+.-+..|++++.
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~-vi~R~riDI~dLk 247 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSL-VIKRIRIDIEDLK 247 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcc-hhheeEeeHHhcC
Confidence 36899999999999999998876666665 77655544433333222212 3444556666643
No 453
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.36 E-value=30 Score=29.35 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCcc-hH----HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------c
Q 022810 63 DGHTVLDVGCGWG-SL----SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G-~~----~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----------~ 127 (291)
.+.++|=.|++.| .+ +..+++. |.+|+.++.+....+.+.+..... +.+.++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence 4678899998652 44 4444444 788888887643223333322221 24567788887632 1
Q ss_pred C-CCccEEEEcccc
Q 022810 128 E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~-~~~D~v~~~~~l 140 (291)
. +++|+++.+..+
T Consensus 81 ~~g~iD~linnAg~ 94 (262)
T PRK07984 81 VWPKFDGFVHSIGF 94 (262)
T ss_pred hcCCCCEEEECCcc
Confidence 1 468999987743
No 454
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.35 E-value=7.9 Score=34.12 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc---cCCccCCCccEE
Q 022810 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI---STFEMEASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~---~~~~~~~~~D~v 134 (291)
..++.+||-.|+|. |..+..+++.. +. ++++++.++...+.+++ .+.+.+ .....+. ......+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEE
Confidence 35778888877753 56677777766 66 78888777765544432 333111 1111111 111112468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..-. ....+..+.+.|+++|.++..
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 86421 134567778889999998654
No 455
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.28 E-value=7.8 Score=34.78 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc----ccC-Cc--c
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----IST-FE--M 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d----~~~-~~--~ 127 (291)
+...++++.+||=.|+| .|..+..+++.. +. +|+++|.+++..+.+++ .|.+. .+...+ +.+ .. .
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~----~Ga~~-~i~~~~~~~~~~~~v~~~~ 252 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKK----LGATD-CVNPNDYDKPIQEVIVEIT 252 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCCe-EEcccccchhHHHHHHHHh
Confidence 44567789999999986 466777777776 66 79999999987766643 34321 111111 101 00 0
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~ 167 (291)
.+.+|+|+-... ....+....+.++++ |.+++..
T Consensus 253 ~~g~d~vid~~G------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 253 DGGVDYSFECIG------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCCEEEECCC------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 135787775321 134567777888886 9877643
No 456
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=80.17 E-value=29 Score=31.63 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=26.0
Q ss_pred EEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022810 66 TVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 66 ~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~ 105 (291)
+|-=+|.| .|.....+... +.+|+++|.+++.++.+++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHc
Confidence 56667887 34333333333 7899999999998877765
No 457
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=79.73 E-value=12 Score=31.30 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.+||=.|+ +|.++..+++.+ .|.+|++++.++..++......+..+. ++.++.+|+.+... . +
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678998885 455555555432 378999999988776665555554443 57788888876321 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|.++.+...
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 57988887643
No 458
>PRK10083 putative oxidoreductase; Provisional
Probab=79.46 E-value=19 Score=31.63 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=55.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHH-CCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC--CC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQK-YSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME--AS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~~~~~~~--~~ 130 (291)
......++.+||=.|+| .|..+..+++. . +. .+++++.+++..+.+++ .|.+.+ .....+..+.... ..
T Consensus 154 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~-G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 154 GRTGPTEQDVALIYGAGPVGLTIVQVLKGVY-NVKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEEKGIK 228 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhcCCCC
Confidence 34566788899999975 34455556653 3 55 58889998886655543 343211 1111111110011 22
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+|+|+.... . ...+....+.|+++|.++..
T Consensus 229 ~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 229 PTLIIDAAC-----H-PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 456654221 1 34577788899999998764
No 459
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.41 E-value=22 Score=32.25 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccc
Q 022810 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADI 122 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~--~i~~~~~d~ 122 (291)
+.+-+-+++.+.+.. . . .+||-++-.-|.++..++...| . ...|. --.-...+.|+..++++ .+++. +.
T Consensus 29 daade~ll~~~~~~~-~-~-~~~~i~nd~fGal~~~l~~~~~--~-~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~ 99 (378)
T PRK15001 29 EAADEYLLQQLDDTE-I-R-GPVLILNDAFGALSCALAEHKP--Y-SIGDS-YISELATRENLRLNGIDESSVKFL--DS 99 (378)
T ss_pred ccHHHHHHHHHhhcc-c-C-CCEEEEcCchhHHHHHHHhCCC--C-eeehH-HHHHHHHHHHHHHcCCCcccceee--cc
Confidence 334444455554321 1 1 2899999999999999996432 1 12342 22333455677777763 24443 32
Q ss_pred cCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 123 ~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
.+ ++++.+|+|+...+- ...-....+..+.++|.||+.+++..-
T Consensus 100 ~~-~~~~~~d~vl~~~PK-~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 100 TA-DYPQQPGVVLIKVPK-TLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred cc-cccCCCCEEEEEeCC-CHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 22 234668998886543 123345677888899999999776443
No 460
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.29 E-value=13 Score=31.15 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=46.8
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~D~v~~~ 137 (291)
.+||-.|++ |.++..+++.+ .+.+|++++.++...+.........+. ++.++.+|+.+... ....|+|+.+
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 468888775 44444444332 378999998887766555554444443 57888899876421 1378999886
Q ss_pred cc
Q 022810 138 EM 139 (291)
Q Consensus 138 ~~ 139 (291)
..
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
No 461
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.10 E-value=5.2 Score=37.24 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l 140 (291)
-.|.+|+=+|+|. |......++.+ +.+|+++|.++.....+. ..|. ++ .++.+.. ...|+|++...
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~----~~G~---~~--~~leell--~~ADIVI~atG- 318 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF-GARVVVTEIDPICALQAA----MEGY---QV--VTLEDVV--ETADIFVTATG- 318 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHH----hcCc---ee--ccHHHHH--hcCCEEEECCC-
Confidence 3688999999985 44333334344 789999988876432221 1232 22 2332221 46799987532
Q ss_pred cccccHHHHH-HHHHhccccCeeEEEEe
Q 022810 141 EHMKNYQNLL-KKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l-~~~~~~L~pgG~l~i~~ 167 (291)
...++ ......||||++++-..
T Consensus 319 -----t~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 319 -----NKDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred -----cccccCHHHHhccCCCcEEEEcC
Confidence 23344 36778899999887643
No 462
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=79.00 E-value=16 Score=31.96 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc----ccCCccCCCccEEE
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----ISTFEMEASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d----~~~~~~~~~~D~v~ 135 (291)
..++.+||=.|+| .|..+..+++...+.++++++.+++..+.++ +.+.+.+--...+ +........+|+|+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvl 240 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGADHVLNASDDVVEEVRELTGGRGADAVI 240 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCcEEEcCCccHHHHHHHHhCCCCCCEEE
Confidence 5578889988865 3444555565542278999988887655443 3343211111111 11111114689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.... . ...+..+.+.|+++|.++..
T Consensus 241 d~~g-----~-~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 241 DFVG-----S-DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EcCC-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 6321 1 34577788889999998764
No 463
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=78.98 E-value=5.7 Score=28.14 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=27.3
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022810 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-~~~D~v~~~~ 138 (291)
+|| +-||+|..+..++.. ..++.+++.|+ .+++...++.+.... ..+|+|++..
T Consensus 4 kIL-vvCgsG~~TS~m~~~-----------------ki~~~l~~~gi-~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 4 KII-VACGGAVATSTMAAE-----------------EIKELCQSHNI-PVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred eEE-EECCCchhHHHHHHH-----------------HHHHHHHHCCC-eEEEEEecHHHHhhhcCCCCEEEECC
Confidence 344 458888766665322 03344444555 355555555443321 4456665554
No 464
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.90 E-value=14 Score=30.88 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
++.++|-.|++ |.++..+++.+ .+.+|+.++.+++.++.+.+..+..+. ++.++.+|+.+... . +
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 47788888864 44444444332 278999999988776665555554443 57888999876421 1 4
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
+.|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 5788887654
No 465
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.84 E-value=14 Score=35.98 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=55.4
Q ss_pred CEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEcc
Q 022810 65 HTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSIE 138 (291)
Q Consensus 65 ~~vLDiGcG~-G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~~ 138 (291)
.+|+=+|||. |.......... +..++.+|.+++.++.+++ . ...++.+|..+.. .. ++.|.+++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh----c---CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 5788888873 44332222222 7799999999998877654 2 3568899998853 12 5788877643
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.- ++....+-...+.+.|+-.++...
T Consensus 473 ~d---~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 473 DD---PQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CC---HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 11 111223333444567777666544
No 466
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.63 E-value=16 Score=31.95 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022810 64 GHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~-G-~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~~~~D~v~~~~~l~ 141 (291)
..+|.=||+|. | .++..+.+.....+|+++|.++...+.++ ..+. ... ...+..+. ....|+|+..-+..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~-~~~-~~~~~~~~--~~~aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGL-GDR-VTTSAAEA--VKGADLVILCVPVG 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCC-Cce-ecCCHHHH--hcCCCEEEECCCHH
Confidence 35788999885 2 34444544321248999999998665543 2332 111 11221111 14579888765542
Q ss_pred ccccHHHHHHHHHhccccCeeEE
Q 022810 142 HMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~L~pgG~l~ 164 (291)
. ...+++.+...++++..++
T Consensus 78 ~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 A---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred H---HHHHHHHHHhhCCCCCEEE
Confidence 2 2455666667777776543
No 467
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.60 E-value=26 Score=30.68 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=60.1
Q ss_pred cCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccC----CccCCCc
Q 022810 59 SRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DIST----FEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~----~~~~~~~ 131 (291)
+.+.++.+||=.|++ .|..+..+++.. +.+++++..+++..+.++ ..+.+.+--... +..+ ......+
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHhcCCCC
Confidence 466788899988876 577777788776 789999998887655442 233321110111 1100 1112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+|+....- ...+..+.+.|+++|.++...
T Consensus 236 d~vl~~~~~------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc------hHHHHHHHHHhhcCCEEEEec
Confidence 988852211 345677788899999987643
No 468
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=78.57 E-value=10 Score=30.99 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCC
Q 022810 63 DGHTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNS 96 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~-~~~~l~~~~p~~~v~~vD~s 96 (291)
...+||=+|||. |. .+..|+.. .-.+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 367999999983 44 44445544 13489999977
No 469
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.40 E-value=13 Score=33.28 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=58.4
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEc--ccc----CCcc
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVA--DIS----TFEM 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~--d~~----~~~~ 127 (291)
....+.++.+||=.|+| .|..+..+++.. +. .+++++.++...+.+++ .|.+. +..... +.. +..
T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~- 250 (365)
T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT- 250 (365)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-
Confidence 34456788899988875 355566667665 55 58889988886666533 33311 111111 110 111
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccc-cCeeEEEEe
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMK-EDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~ 167 (291)
.+.+|+|+.... . ...+....+.|+ ++|.++...
T Consensus 251 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 DGGVDYAFEVIG-----S-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCCcEEEECCC-----C-HHHHHHHHHHhccCCCEEEEEe
Confidence 245888875321 1 345677788888 999987653
No 470
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.34 E-value=15 Score=31.04 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C-C
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~---------~-~ 129 (291)
.+.++|-.|++.|. ++..+++. |.+|+.++.++..++.+.+......-.++.++.+|+.+... . +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARA--GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46688888876542 33444444 78999999988776665555443211267888899877421 1 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
..|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 5888887654
No 471
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.20 E-value=16 Score=30.54 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
++.+||=.|++. .++..+++.+ .+.+|++++.++...+.+.......+. ++.++.+|+.+... . +
T Consensus 4 ~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 457888777654 4444333321 278999999988766655555544343 67889999876321 1 4
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
..|.|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 67998887643
No 472
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=78.15 E-value=36 Score=29.86 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcccc----CCccCCCccE
Q 022810 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS----TFEMEASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-i~~~~~d~~----~~~~~~~~D~ 133 (291)
..++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.+++ .+.+. +.....+.. .......+|+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence 3567788877765 455666677765 675 8888887765544432 33311 111111111 1111246888
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
|+.... ....+..+.+.|+++|.++...
T Consensus 234 vld~~g------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSG------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCC------CHHHHHHHHHhhcCCCEEEEEc
Confidence 876421 1345778888899999976643
No 473
>PRK06949 short chain dehydrogenase; Provisional
Probab=78.12 E-value=15 Score=30.62 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||-.|+ +|.++..+++.+ .+.+|++++.+++.++.........+. ++.++.+|+.+... .+
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678888884 445555544432 378999999988876666555444332 57888888876321 03
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
..|+++.+..
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 5798888664
No 474
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.81 E-value=14 Score=30.69 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=46.0
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--------CCCccEE
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------EASYDRI 134 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~D~v 134 (291)
++++-.|+. |.++..+++.+ .+.+|++++.++...+...+.....+..++.++.+|+.+... ...+|++
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 467877754 55555444432 278999999988766554444443333478899999887431 1357888
Q ss_pred EEcc
Q 022810 135 YSIE 138 (291)
Q Consensus 135 ~~~~ 138 (291)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8754
No 475
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=77.77 E-value=4.5 Score=34.21 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=58.6
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCCCccEEEEcccccc
Q 022810 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 68 LDiGcG~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~D~v~~~~~l~~ 142 (291)
|..=+|+=.++..+.+. .-+.+.+|+.+.-.+..++++... .++++...|..+ +++..+=-+|+..++++.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 55666666666666654 779999999999888887776542 379999999765 233355678999999988
Q ss_pred cccHHHHHHHHHhccc--cCeeEEEEee
Q 022810 143 MKNYQNLLKKISKWMK--EDTLLFVHHF 168 (291)
Q Consensus 143 ~~~~~~~l~~~~~~L~--pgG~l~i~~~ 168 (291)
-.++..+...+.+.+| |.|++++=.|
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 8888888888877776 7888766443
No 476
>PRK07904 short chain dehydrogenase; Provisional
Probab=77.61 E-value=14 Score=31.15 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHH-HHHHHHHHHHhCCCCeEEEEccccCCcc-----C----
Q 022810 62 EDGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM-----E---- 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~l~~~~---p~~~v~~vD~s~~~-~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 128 (291)
..+.+||-.|++ |.++..+++.+ .+.+|+.++.++.. ++.+.+.....+..++.++.+|+.+... .
T Consensus 6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 356788988885 45555555432 14799999877664 5554444544443368889999876431 1
Q ss_pred -CCccEEEEcc
Q 022810 129 -ASYDRIYSIE 138 (291)
Q Consensus 129 -~~~D~v~~~~ 138 (291)
+..|+++.+.
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 3689887654
No 477
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.53 E-value=15 Score=30.74 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022810 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~- 128 (291)
.+.++|-.|++.|. .+..|+++ +.+|++++.+++.++...+.....+ .++.++.+|+.+... .
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789988876542 33344443 7899999998877766655555444 267788888876421 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+...
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999877643
No 478
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.48 E-value=10 Score=36.29 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=52.0
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022810 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~----~~-~~~D~v~~~ 137 (291)
.+++=+||| ..+..+++.. .+.+++.+|.+++.++.+++ . ....+.+|..+.. .. +++|.+++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 456666665 4444444432 26789999999997766653 2 4678999998742 12 678866653
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
-.- -.+.......+ +.+.|+..++..
T Consensus 489 ~~~--~~~~~~iv~~~-~~~~~~~~iiar 514 (558)
T PRK10669 489 IPN--GYEAGEIVASA-REKRPDIEIIAR 514 (558)
T ss_pred cCC--hHHHHHHHHHH-HHHCCCCeEEEE
Confidence 211 01111233333 445677666553
No 479
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.44 E-value=33 Score=28.22 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=47.5
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~v-D~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
+.++|=.|+ +|.++..+++.+ .+.+++.+ +.++...+.........+ .++.++.+|+.+...- +
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457777775 455555554432 27788888 887776655554444433 2688899998774310 2
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
.+|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 68999986643
No 480
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=77.37 E-value=24 Score=30.82 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=59.0
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCC----c-cCC
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTF----E-MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~-d~~~~----~-~~~ 129 (291)
......++.+||=.|+| .|..+..+++...+.++++++.+++..+.+++ .+.+.+ +.. +..+. . ..+
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~----~g~~~v--~~~~~~~~~~~~v~~~~~ 229 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE----VGADLT--INSKRVEDVAKIIQEKTG 229 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH----cCCcEE--ecccccccHHHHHHHhcC
Confidence 34566788999999865 35566666765237899999999987766643 343221 111 10110 0 012
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|.++.... ....+..+.+.|+++|.++...
T Consensus 230 ~~d~vi~~~~------~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 230 GAHAAVVTAV------AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred CCcEEEEeCC------CHHHHHHHHHhccCCCEEEEEe
Confidence 4674443211 1356788888999999977643
No 481
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.34 E-value=14 Score=30.41 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.+||-+|+ +|.++..+++.+ .+.+|++++.++.......+..... .++.++.+|+.+... . +
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3568888885 555555554432 2789999998887655554443322 367888899876421 0 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
.+|.|+.+..
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 6788887653
No 482
>PLN02702 L-idonate 5-dehydrogenase
Probab=77.33 E-value=42 Score=29.84 Aligned_cols=100 Identities=12% Similarity=0.206 Sum_probs=58.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE---ccccC----C--
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIV---ADIST----F-- 125 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~---~d~~~----~-- 125 (291)
....+.++.+||=+|+| .|..+..+++.. +. .+++++.++...+.++ ..+.+.+.... .+... +
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAF-GAPRIVIVDVDDERLSVAK----QLGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCEEEecCcccccHHHHHHHHhh
Confidence 34556788899999875 456667777765 55 5889998877555443 33442211111 11111 1
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.....+|+|+.... . ...+..+.+.|+++|.++...
T Consensus 250 ~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 250 AMGGGIDVSFDCVG-----F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hcCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 01145788876421 1 245788888999999976543
No 483
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.31 E-value=16 Score=30.74 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~ 129 (291)
++.++|=.|+ +|.++..+++.+ .+.+|++++.+++..+...+.....+. ++.++.+|+.+...- +
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888886 455555544432 378999999988766655555443332 678888998764310 3
Q ss_pred CccEEEEccc
Q 022810 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~v~~~~~ 139 (291)
++|+|+.+..
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899887653
No 484
>PRK07985 oxidoreductase; Provisional
Probab=77.20 E-value=43 Score=28.89 Aligned_cols=102 Identities=8% Similarity=0.057 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCH--HHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK--TQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~--~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~ 128 (291)
.+.++|-.|++ |.++..+++.+ .|.+|+.++.+. ...+...+.....+. ++.++.+|+.+... .
T Consensus 48 ~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789988865 33333333321 278888876542 333333333333332 57788889876420 1
Q ss_pred -CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEE
Q 022810 129 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~v~~~~~l~~----~-----~~-----------~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..|.++.+..... + .+ .-.+++.+.+.++.+|.+++.
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 46798887654311 1 11 123555566666677876553
No 485
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.19 E-value=17 Score=30.35 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022810 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~----------~-~ 129 (291)
.+.++|-.|++. .++..+++.+ .+.+|+.++-++..++.+.+.....+. ++.++.+|+.+... . +
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 367888888754 4444443322 278999999988776666555544443 68888999876421 0 3
Q ss_pred CccEEEEcccc
Q 022810 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~v~~~~~l 140 (291)
+.|+|+.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999887643
No 486
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=77.11 E-value=9.2 Score=33.61 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=59.0
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc-------CCcc
Q 022810 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-------TFEM 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~-------~~~~ 127 (291)
..+.+.++.+||=.|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-. ....
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~-g~~~v~~~~~s~~~~~~~~~----~g~~--~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKAS-GARKVIVSDLNEFRLEFAKK----LGAD--YTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCc--EEecCCccCHHHHHHHHhC
Confidence 33466788899988875 566666677665 777 8888888886665532 3331 11111111 1111
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
...+|+|+....- ...+..+.+.|+++|.++..
T Consensus 232 ~~~vd~vld~~~~------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 232 GRGADVVIVATGS------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CcCCCEEEECCCC------hHHHHHHHHHhhcCCEEEEE
Confidence 1358988854221 24567777889999998763
No 487
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.02 E-value=19 Score=31.58 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=51.3
Q ss_pred CCEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-------ccCCc-cCCCccE
Q 022810 64 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------ISTFE-MEASYDR 133 (291)
Q Consensus 64 ~~~vLDiGcG~--G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-------~~~~~-~~~~~D~ 133 (291)
.++|+=+|+|. |.++..|++. +.+|+.+.-++. + .....++ .+.-..++ +.... ....+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~----~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--E----AVRENGL-QVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--H----HHHhCCe-EEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 46899999983 3456566654 678888876642 2 1223332 11111111 11111 1157898
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
|+..--.. +...+++.+...+++++.++..
T Consensus 76 vilavK~~---~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 76 VLVGLKTT---ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEEEecCC---ChHhHHHHHhhhcCCCCEEEEe
Confidence 88754332 3356778888888899876553
No 488
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.00 E-value=23 Score=35.13 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=65.4
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccCC
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~i~~~~~d~~~~ 125 (291)
.+|--||+|+=. ++..++.. |.+|+.+|.+++.++.+++++... + +.+++.. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 478899999533 44445544 899999999999998877655321 1 1123321 222111
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...|+|+=. +.+.++-..++++++.++++|+.+|.-.+.+
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 391 ---DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred ---cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 467887754 5666666788999999999999887665444
No 489
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=76.98 E-value=52 Score=28.99 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----c--cCCCccE
Q 022810 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----E--MEASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~----~--~~~~~D~ 133 (291)
.++.+||-.|+| .|..+..+++.. +. +|++++.++...+.+++ .|.+ .++...-... . .++.+|+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKAL-GPANIIVVDIDEAKLEAAKA----AGAD--VVVNGSDPDAAKRIIKAAGGGVDA 246 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----hCCc--EEecCCCccHHHHHHHHhCCCCcE
Confidence 367889888876 456666677665 66 78999988886665532 3431 1111111010 0 0125788
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 134 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
++.... ....+..+.+.|+++|.++..
T Consensus 247 vid~~g------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 247 VIDFVN------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEECCC------CHHHHHHHHHHhhcCCeEEEE
Confidence 875321 134578888899999997753
No 490
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.94 E-value=22 Score=31.27 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc----cCCccCCCccEE
Q 022810 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI----STFEMEASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i-~~~~~d~----~~~~~~~~~D~v 134 (291)
.++.+||-.|+|. |..+..+++.. +. ++++++.++...+.+++ .|.+.+ .....+. ........+|+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v 236 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHV-GARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFDVG 236 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcCCCCCCEE
Confidence 4678888888763 66667777765 66 68888887776554433 343211 0111111 011112468888
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 168 (291)
+.... ....+..+.+.|+++|.++....
T Consensus 237 ~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 237 LEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 76321 13467778889999999877543
No 491
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.85 E-value=43 Score=28.02 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---------c-C-
Q 022810 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---------M-E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~---------~-~- 128 (291)
.++++|-.|.++ +.++..+++.+ .|.+|+.++.+....+.+ .+....++.++.+|+.+.. . .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL----QKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH----HhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888763 34444444432 378999888764322222 2211125778889987642 0 1
Q ss_pred CCccEEEEcccc
Q 022810 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~v~~~~~l 140 (291)
++.|+++.+..+
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 568999887643
No 492
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=76.75 E-value=51 Score=28.83 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-------ccCC
Q 022810 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-------EMEA 129 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~-~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~-------~~~~ 129 (291)
....++.+||=.|+| .|..+..+++.. +. ++++++.++...+.+++ .|. ..+..+-.++ ....
T Consensus 163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~-g~~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~l~~~~~~~ 234 (344)
T cd08284 163 AQVRPGDTVAVIGCGPVGLCAVLSAQVL-GAARVFAVDPVPERLERAAA----LGA---EPINFEDAEPVERVREATEGR 234 (344)
T ss_pred cCCccCCEEEEECCcHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHH----hCC---eEEecCCcCHHHHHHHHhCCC
Confidence 455678888888765 344555566665 65 79999887765544432 332 1122211111 1114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
.+|+|+.... . ...+....+.|+++|.++..
T Consensus 235 ~~dvvid~~~-----~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 235 GADVVLEAVG-----G-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHhcccCCEEEEE
Confidence 6898876421 1 34677788889999987654
No 493
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.68 E-value=40 Score=27.52 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=49.0
Q ss_pred CCEEEEEcCCc-ch-HHHHHHHHCCCC-EEEEEcCC---HHHHH---------------HHHHHHHHhCC-CCeEEEEcc
Q 022810 64 GHTVLDVGCGW-GS-LSLYIAQKYSNC-KITGICNS---KTQKE---------------FIEEQCRVLEL-QNVEIIVAD 121 (291)
Q Consensus 64 ~~~vLDiGcG~-G~-~~~~l~~~~p~~-~v~~vD~s---~~~~~---------------~a~~~~~~~~~-~~i~~~~~d 121 (291)
..+|+=+|||. |. .+..+++. |. +++.+|.+ +..+. .+++.+..... -++..+..+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA--GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 57899999983 43 44455544 55 79999987 22221 12223322222 134444444
Q ss_pred ccCCccC---CCccEEEEcccccccccHHHHHHHHHhcccc
Q 022810 122 ISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKE 159 (291)
Q Consensus 122 ~~~~~~~---~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~p 159 (291)
+...... ..+|+|+.. .........+++.+.+.+++
T Consensus 99 i~~~~~~~~~~~~DlVi~a--~Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEA--FDNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred CCHhHHHHHhcCCCEEEEC--CCCHHHHHHHHHHHHHHcCC
Confidence 4322111 568999976 33333344556677666554
No 494
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=76.61 E-value=9.6 Score=33.12 Aligned_cols=97 Identities=23% Similarity=0.210 Sum_probs=57.6
Q ss_pred HcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--cc----CCccCC
Q 022810 58 RSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--IS----TFEMEA 129 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d--~~----~~~~~~ 129 (291)
.....++.+||-.|++ .|..+..++... +.+++.++.++...+.++. .+.+ ..+...+ .. ......
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERAKE----LGAD-YVIDYRKEDFVREVRELTGKR 234 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-eEEecCChHHHHHHHHHhCCC
Confidence 3456678899988875 556666666665 7899999988876655432 2321 1111111 00 001114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
.+|+++....- ..+..+.+.|+++|.++...
T Consensus 235 ~~d~~i~~~g~-------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 235 GVDVVVEHVGA-------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCcEEEECCcH-------HHHHHHHHHhhcCCEEEEEe
Confidence 68888865331 34566777889999876643
No 495
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.60 E-value=19 Score=29.77 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------CC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------AS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~-----~------~~ 130 (291)
+.++|-.|+ +|.++..+++.+ .+.+|++++.++...+.........+. ++.++.+|+.+... . +.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567888885 566666655442 378999999887765554444443332 68888999876421 0 36
Q ss_pred ccEEEEcccc
Q 022810 131 YDRIYSIEMF 140 (291)
Q Consensus 131 ~D~v~~~~~l 140 (291)
.|.|+.+...
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 7998876543
No 496
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.48 E-value=29 Score=29.78 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=59.2
Q ss_pred cCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cCCCccEE
Q 022810 59 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~D~v 134 (291)
....++.+||=.|+ +.|..+..+++.. +.+|+++..+++..+.++ ..|.+.+-....+... +. ....+|++
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLK----ELGADEVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCcEEEecCccHHHHHHHhCCCceEE
Confidence 34667889998886 4677788888776 789999998887655543 3343222111111100 00 02468888
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+.... ...+..+.+.|+++|.++..
T Consensus 213 l~~~~-------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 213 LELVG-------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EECCC-------hHHHHHHHHHhccCCEEEEE
Confidence 75321 23577778899999997654
No 497
>PRK06194 hypothetical protein; Provisional
Probab=76.44 E-value=16 Score=31.27 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=47.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------CC
Q 022810 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------AS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~l~~~~--p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~~~~~-----------~~ 130 (291)
+.++|=.|++ |.++..+++.+ .+.+|+.+|.+...++...+.....+. ++.++.+|+.+...- +.
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5678866654 54454444332 278999999887766555444443333 578889998764210 35
Q ss_pred ccEEEEcccc
Q 022810 131 YDRIYSIEMF 140 (291)
Q Consensus 131 ~D~v~~~~~l 140 (291)
.|+|+.+...
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 7999987754
No 498
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.36 E-value=27 Score=30.28 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=50.1
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-------ccCCccC-CCccEE
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------ISTFEME-ASYDRI 134 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d-------~~~~~~~-~~~D~v 134 (291)
++|+=+|+|.-. ++..|++. +.+|+.++. ++.++..+ +.++ .+....++ ..+.... ..+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~----~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALR----ERGL-VIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHH----hCCe-EEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 368888998533 44445544 678999988 55544333 2332 11111001 1111111 568988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022810 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 166 (291)
+..-.- .....+++.+...+.++..++..
T Consensus 73 ilavk~---~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 73 ILAVKA---YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred EEEecc---cCHHHHHHHHHhhcCCCCEEEEe
Confidence 765433 24567788888888877665543
No 499
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.34 E-value=26 Score=34.73 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=64.9
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccCC
Q 022810 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~l~~~~p~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~i~~~~~d~~~~ 125 (291)
.+|.-||+|+=. ++..++.. |..|+.+|.+++.++.+...+... + +.++++. .|....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 479999999733 44444544 899999999999988776654321 1 1233322 233221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022810 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 169 (291)
...|+|+=. +.+.++-..++++++.+.++|+.+|.-.+.+
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ---ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ---cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 467877754 5556666788999999999999887665444
No 500
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=76.18 E-value=35 Score=29.28 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=57.0
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccC
Q 022810 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~p~~~-v~~vD~s~~~~~~a~~~~~~~~~~~i~~~~~d~~~-------~~~~ 128 (291)
.....++.+||=.|+| .|..+..+++.. +.+ ++++..+++..+.+ +..+.+ .++...-.. ....
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~-g~~~v~~~~~~~~~~~~~----~~~g~~--~~~~~~~~~~~~~l~~~~~~ 196 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAA-GARRVIAIDRRPARLALA----RELGAT--EVVTDDSEAIVERVRELTGG 196 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHH----HHhCCc--eEecCCCcCHHHHHHHHcCC
Confidence 4456678888888754 345555566665 777 99998887765533 333431 111111111 1111
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022810 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 167 (291)
..+|+++..... ...+....+.|+++|.++...
T Consensus 197 ~~vd~vld~~g~------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 197 AGADVVIEAVGH------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEc
Confidence 458888764211 345677788899999987643
Done!