BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022811
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 196/288 (68%), Gaps = 1/288 (0%)
Query: 1 MSNMRLKDFPSLMRVTDANDILFNYMKTEVQNCLESSAIIFNTFDEHEGKVLEAIASKSP 60
+ N RLKD +R T+ NDI+ + + + I+ NTF+E E V+ A++S P
Sbjct: 191 LKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIP 250
Query: 61 NIYTVGPLHLLCRHLPE-SEFKSFRSNLWKEDPECLKWLNEKEPNSVAYVNYGSITVMTD 119
+IY +GPL L + P+ + S SNLWKED ECL WL KEP SV YVN+GS TVMT
Sbjct: 251 SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTP 310
Query: 120 EQMKEFAWGLANSGHPFLWIVRPDMVTGDSAILSQEFYEEIKDRGMIANWCPQDKVLSHP 179
EQ+ EFAWGLAN FLWI+RPD+V G S I S EF EI DRG+IA+WCPQDKVL+HP
Sbjct: 311 EQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHP 370
Query: 180 SVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGMEVNRDASREDIA 239
S+ FLTH GWNS ES+C GVP++CWPFFA+Q T+CR+ W IGME++ + RE++A
Sbjct: 371 SIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELA 430
Query: 240 ALVKEIMEGDKGKLIRQNVQDWRKKAEAATDVGGASFNNFNKCIKEVL 287
L+ E++ GDKGK ++Q + +KKAE T GG S+ N NK IK+VL
Sbjct: 431 KLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 143/279 (51%), Gaps = 32/279 (11%)
Query: 7 KDFPSLMRVTDANDILFNYMKTEVQNCLESSAIIFNTFDEHEGKVLEAIASKS---PNIY 63
KDF L D D + ++ + E+ I+ NTF E E ++A+ P +Y
Sbjct: 180 KDF--LDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVY 237
Query: 64 TVGPLHLLCRHLPESEFKSFRSNLWKEDPECLKWLNEKEPNSVAYVNYGSITVMTDEQMK 123
VGPL ++ + E K E+ ECLKWL+ + SV YV++GS +T EQ+
Sbjct: 238 PVGPL----VNIGKQEAKQ------TEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLN 287
Query: 124 EFAWGLANSGHPFLWIVR-PDMVTGDS-----------AILSQEFYEEIKDRG-MIANWC 170
E A GLA+S FLW++R P + S L F E K RG +I W
Sbjct: 288 ELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWA 347
Query: 171 PQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGMEVN 230
PQ +VL+HPS FLTH GWNS LESV G+P+I WP +AEQ+ N S +
Sbjct: 348 PQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPR 407
Query: 231 RD----ASREDIAALVKEIMEGDKGKLIRQNVQDWRKKA 265
RE++A +VK +MEG++GK +R +++ ++ A
Sbjct: 408 AGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAA 446
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 145/289 (50%), Gaps = 20/289 (6%)
Query: 1 MSNMRLKDFPSLMRVTDANDILFNYMKTEVQNCLESSAIIFNTFDEHEGKVLEAIASKSP 60
MS +R +D + + N + + Q +++A+ N+F+E + + + SK
Sbjct: 179 MSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLK 238
Query: 61 NIYTVGPLHLLCRHLPESEFKSFRSNLWKEDPECLKWLNEKEPNSVAYVNYGSITVMTDE 120
+GP +L+ + CL+WL E++P SV Y+++G++T
Sbjct: 239 TYLNIGPFNLITP-----------PPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPA 287
Query: 121 QMKEFAWGLANSGHPFLWIVRPDMVTGDSAI--LSQEFYEEIKDRGMIANWCPQDKVLSH 178
++ + L S PF+W +R D A L + F E+ + GM+ W PQ +VL+H
Sbjct: 288 EVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAH 341
Query: 179 PSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGMEVNRDA-SRED 237
+V F+TH GWNS+ ESV GGVP+IC PFF +Q+ N R IG+ + ++
Sbjct: 342 EAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSG 401
Query: 238 IAALVKEIMEGDKGKLIRQNVQDWRKKAEAATDVGGASFNNFNKCIKEV 286
+ + +I+ +KGK +R+N++ R+ A+ A G+S NF + V
Sbjct: 402 LMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 23/263 (8%)
Query: 35 ESSAIIFNTFDEHEGKVLEAIAS---KSPNIYTVGPLHLLCRHLPESEFKSFRSNLWKED 91
++ II NTF + E ++A+ K P IY VGPL L + P + + +L
Sbjct: 211 DTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPL-LDLKGQPNPKLDQAQHDL---- 265
Query: 92 PECLKWLNEKEPNSVAYVNYGSITV-MTDEQMKEFAWGLANSGHPFLWIVRPDMVTGDSA 150
LKWL+E+ SV ++ +GS+ V Q++E A GL +SG FLW + +
Sbjct: 266 --ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----SNSAEKK 318
Query: 151 ILSQEFYE--EIKDRGMIANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPF 208
+ + F E E++ +GMI W PQ +VL+H ++ F++H GWNSILES+ GVPI+ WP
Sbjct: 319 VFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPI 378
Query: 209 FAEQQTNCRYASTTWGIGMEVNRDASREDIAALVKEIMEG-----DKGKLIRQNVQDWRK 263
+AEQQ N WG+G+ + D + +EI +G DK ++ + VQ+ ++
Sbjct: 379 YAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKE 438
Query: 264 KAEAATDVGGASFNNFNKCIKEV 286
+ A GG+S + K I ++
Sbjct: 439 MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 23/263 (8%)
Query: 35 ESSAIIFNTFDEHEGKVLEAIAS---KSPNIYTVGPLHLLCRHLPESEFKSFRSNLWKED 91
++ II NTF + E ++A+ K P IY VGPL L + P + + +L
Sbjct: 211 DTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPL-LDLKGQPNPKLDQAQHDL---- 265
Query: 92 PECLKWLNEKEPNSVAYVNYGSITV-MTDEQMKEFAWGLANSGHPFLWIVRPDMVTGDSA 150
LKWL+E+ SV ++ +GS+ V Q++E A GL +SG FLW + +
Sbjct: 266 --ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----SNSAEKK 318
Query: 151 ILSQEFYE--EIKDRGMIANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPF 208
+ + F E E++ +GMI W PQ +VL+H ++ F++H GWNSILES+ GVPI+ WP
Sbjct: 319 VFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPI 378
Query: 209 FAEQQTNCRYASTTWGIGMEVNRDASREDIAALVKEIMEG-----DKGKLIRQNVQDWRK 263
+AEQQ N WG+G+ + D + +EI +G DK ++ + VQ+ ++
Sbjct: 379 YAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKE 438
Query: 264 KAEAATDVGGASFNNFNKCIKEV 286
+ A GG+S + K I ++
Sbjct: 439 MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 16/252 (6%)
Query: 36 SSAIIFNTFDEHEGKVLEAIASKSPNIYTVGPLHLLCRHLPESEFKSFRSNLWKEDPECL 95
++A+ N+F + + SK + VGP +L P+ + ++ CL
Sbjct: 216 ANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTT---PQRKVS--------DEHGCL 264
Query: 96 KWLNEKEPNSVAYVNYGSITVMTDEQMKEFAWGLANSGHPFLWIVRPDMVTGDSAILSQE 155
+WL++ E +SV Y+++GS+ ++ A L G PF+W R D L +
Sbjct: 265 EWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKG 320
Query: 156 FYEEIKDRGMIANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTN 215
F E K +G I W PQ ++L H SV VFLTH GWNS+LE + GGVP+I PFF +Q N
Sbjct: 321 FLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN 380
Query: 216 CRYASTTWGIGMEVNRDA-SREDIAALVKEIMEGDKGKLIRQNVQDWRKKAEAATDVGGA 274
+ IG+ V+ ++E I ++ M +KG ++RQ + ++ A A + G
Sbjct: 381 TILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGT 440
Query: 275 SFNNFNKCIKEV 286
S +F I+ V
Sbjct: 441 SAMDFTTLIQIV 452
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 85 SNLWKEDP-ECLKWLNEKEPNSVAYVNYGS-ITVMTDEQMKEFAWGLANSGHPFLWIVRP 142
SN K P E ++ N V + GS ++ T+E+ A LA LW R
Sbjct: 1 SNAAKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW--RF 58
Query: 143 DMVTGDSAILSQEFYEEIKDRGMIANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVP 202
D D+ L+ Y+ W PQ+ +L HP F+THGG N I E++ G+P
Sbjct: 59 DGNKPDTLGLNTRLYK----------WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIP 108
Query: 203 IICWPFFAEQQTNCRYASTTW-GIGMEVNRDASREDIAALVKEI 245
+ P FA+Q N + + ++ N +S + + AL + I
Sbjct: 109 XVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVI 152
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 166 IANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGI 225
+ W PQ +L+ S F+TH G S +E++ VP++ P AEQ N G+
Sbjct: 309 VHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-VELGL 365
Query: 226 GMEVNRDAS-----REDIAALVKEIMEGDKGKLIRQNV 258
G + RD RE + A+ + ++ +RQ +
Sbjct: 366 GRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEI 403
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 75 LPESEFKS------FRSNLWKEDPECLKWLNEKE-PNSVAYVNYGSITVMTDEQMKEFAW 127
L E EF++ R + E + WL+ ++ + Y+ G+ + T E ++
Sbjct: 206 LQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAID 265
Query: 128 GLANSGHPFLWIVRPDMVTGDSAILSQEFYEEIKDRGMIANWCPQDKVLSHPSVSVFLTH 187
GLA + D++ L E+ + +W PQ +L H V + + H
Sbjct: 266 GLAG--------LDADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHH 315
Query: 188 GGWNSILESVCGGVPIICWP 207
GG + L ++ GVP + +P
Sbjct: 316 GGSGTTLGALGAGVPQLSFP 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 168 NWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGM 227
W P VL+H LTHG ++LE+ GVP++ P FA + G+G
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 228 EVNRD 232
+ D
Sbjct: 345 VLRPD 349
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 159 EIKDRGMIANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRY 218
E+ D + +W PQ +L +F+TH G E + P+I P +Q N
Sbjct: 280 ELPDNVEVHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGN--- 334
Query: 219 ASTTWGIGMEVNRDASREDIAALVKE 244
A G+G+ + A+ E A L++E
Sbjct: 335 ADMLQGLGV-ARKLATEEATADLLRE 359
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 166 IANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGI 225
+ W P +L + + HGG ++L ++ GVP P + Q TN R T GI
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTGLGI 348
Query: 226 GMEVNRDA-SREDIAALVKEIMEGDKGKLIRQNVQDWRKKAEAAT 269
G + + E L+ + + +RQ + + AE A
Sbjct: 349 GFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 166 IANWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGI 225
+ W P +L + + HGG ++L ++ GVP P + Q TN R T GI
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTGLGI 348
Query: 226 GMEVNRDA-SREDIAALVKEIMEGDKGKLIRQNVQDWRKKAEAAT 269
G + + E L+ + + +RQ + + AE A
Sbjct: 349 GFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 168 NWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCR 217
W P KVL +V V THGG ++ E++ G P++ P + Q R
Sbjct: 303 RWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQSFDVQPXAR 350
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 168 NWCPQDKVLSHPSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCR 217
W P KVL +V V THGG ++ E++ G P++ P + Q R
Sbjct: 303 RWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQSFDVQPXAR 350
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 91 DPECLKWLNEKEPNSVAYVNYGSITVMTDEQMKEFAWGLANSGHPFLWIVRPDMVTGDSA 150
DPE KE + + + G VMTDE+ E A LW + + V GD++
Sbjct: 224 DPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMA-----RKRILLWH-KKNAVAGDAS 277
Query: 151 ILSQEFYEEIKD 162
+L+ E +E KD
Sbjct: 278 LLADERRKEGKD 289
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 35/237 (14%)
Query: 29 EVQNCLESSAIIFNTFDEHEGKVLEAIASKSPNIYTVGP-----LHLLCRHLPESEFKSF 83
E ++ L ++A IF +G L +AS+ + VG ++ + P+ K+F
Sbjct: 102 ERKDLLSANAEIFTV----QGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNF 157
Query: 84 RSNLWKEDPECLKWLNEKEPNSVAYVNYGSITVMTDEQM-KEFAWGLANSGHPFLWIVRP 142
+ L + L L K VA + ++ M +F + A G L ++
Sbjct: 158 TAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYPDFRFATAE-GESLLKLIND 216
Query: 143 DMVTGDSAI--LSQEFYEEIKDRGMIANWCPQDKVLSHPSVSVFLTHGGWNS-------- 192
D+ D+ I + + I+ RG+ + + + H V T+G W +
Sbjct: 217 DVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGTNGKWVTMGIPSDGS 276
Query: 193 --ILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGMEVNRDASREDIAALVKEIME 247
I E + GVP+IC N Y G+E++ SRE + + E++E
Sbjct: 277 YGIPEDIIYGVPVIC--------ENGEYKRVE---GLEIDA-FSREKMDGTLAELLE 321
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 91 DPECLKWLNEKEPNSVAYVNYGSITVMTDEQMKEFAWGLANSGHPFLWIVRPDMVTGDSA 150
DPE KE + + + G VMTDE+ E A LW + + V GD++
Sbjct: 212 DPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMA-----RKRILLWH-KKNAVAGDAS 265
Query: 151 ILSQEFYEEIKD 162
+L+ E +E KD
Sbjct: 266 LLADERRKEGKD 277
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 179 PSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGMEV 229
P+ V + HGG + L + GVP + P AE + R G G+EV
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEV 347
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 179 PSVSVFLTHGGWNSILESVCGGVPIICWPFFAEQQTNCRYASTTWGIGMEV 229
P+ V + HGG + L + GVP + P AE + R G G+EV
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEV 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,128,518
Number of Sequences: 62578
Number of extensions: 370275
Number of successful extensions: 1133
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 34
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)