Query 022812
Match_columns 291
No_of_seqs 237 out of 1543
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3752 Steroid 5-alpha reduct 100.0 1.2E-62 2.6E-67 435.8 27.0 251 8-264 14-271 (272)
2 PF06966 DUF1295: Protein of u 100.0 3.5E-62 7.6E-67 441.4 25.1 228 25-252 2-235 (235)
3 KOG4650 Predicted steroid redu 100.0 3.1E-52 6.6E-57 368.5 18.6 255 6-266 6-304 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.8 4.6E-20 1E-24 179.8 13.6 160 89-259 253-431 (432)
5 COG2020 STE14 Putative protein 99.8 3.5E-17 7.6E-22 143.3 16.5 117 135-260 67-186 (187)
6 KOG1435 Sterol reductase/lamin 99.7 3.2E-18 7E-23 163.1 8.6 183 57-259 227-427 (428)
7 PF04191 PEMT: Phospholipid me 99.6 2.9E-14 6.2E-19 112.9 10.6 99 138-245 3-106 (106)
8 KOG1638 Steroid reductase [Lip 99.5 3.9E-13 8.4E-18 119.8 11.3 110 136-259 147-256 (257)
9 KOG2628 Farnesyl cysteine-carb 99.4 9.7E-13 2.1E-17 113.8 8.6 111 140-260 85-201 (201)
10 PLN02392 probable steroid redu 99.3 5.8E-12 1.3E-16 115.1 11.0 109 136-259 150-259 (260)
11 PF02544 Steroid_dh: 3-oxo-5-a 99.3 2.5E-11 5.5E-16 102.7 10.9 111 135-259 39-149 (150)
12 PF04140 ICMT: Isoprenylcystei 99.2 7.7E-11 1.7E-15 92.2 9.3 58 143-200 3-63 (94)
13 PLN02560 enoyl-CoA reductase 99.1 1.3E-09 2.8E-14 102.5 14.6 114 136-258 192-307 (308)
14 PLN03164 3-oxo-5-alpha-steroid 99.0 2.9E-09 6.3E-14 99.6 11.5 113 135-259 208-322 (323)
15 COG1755 Uncharacterized protei 98.7 6.4E-07 1.4E-11 76.0 14.3 96 133-237 66-167 (172)
16 KOG1640 Predicted steroid redu 97.8 0.00084 1.8E-08 62.0 15.5 109 137-259 193-303 (304)
17 KOG1639 Steroid reductase requ 97.7 6.5E-05 1.4E-09 67.9 5.4 105 139-259 189-297 (297)
18 PF07298 NnrU: NnrU protein; 96.7 0.0057 1.2E-07 53.9 7.1 94 136-254 68-161 (191)
19 COG4094 Predicted membrane pro 79.6 2.1 4.5E-05 38.0 3.4 76 172-258 98-173 (219)
20 PLN02797 phosphatidyl-N-dimeth 75.3 8.3 0.00018 32.9 5.7 61 139-200 67-132 (164)
21 KOG4142 Phospholipid methyltra 48.1 1.2E+02 0.0026 26.3 7.8 64 137-200 97-165 (208)
22 TIGR00026 hi_GC_TIGR00026 deaz 38.4 23 0.0005 28.4 2.0 21 235-258 89-109 (113)
23 COG3162 Predicted membrane pro 34.8 2.3E+02 0.005 22.4 7.9 64 91-155 12-81 (102)
24 PF15113 TMEM117: TMEM117 prot 32.5 76 0.0017 30.8 4.7 80 32-116 38-119 (415)
25 PF03818 MadM: Malonate/sodium 31.1 1.3E+02 0.0028 21.6 4.5 52 3-57 6-57 (60)
26 COG1133 SbmA ABC-type long-cha 26.7 1.3E+02 0.0027 28.9 5.0 82 109-191 208-313 (405)
27 PF04075 DUF385: Domain of unk 25.8 60 0.0013 26.7 2.5 21 235-258 107-127 (132)
28 COG3462 Predicted membrane pro 25.6 2.4E+02 0.0052 22.8 5.7 12 229-240 88-99 (117)
29 PF09124 Endonuc-dimeris: T4 r 24.0 56 0.0012 23.0 1.7 12 183-194 2-13 (54)
30 PF05975 EcsB: Bacterial ABC t 22.3 1.8E+02 0.0039 28.1 5.5 20 180-199 275-294 (386)
31 KOG1582 UDP-galactose transpor 22.2 1.1E+02 0.0023 29.0 3.6 43 7-49 42-84 (367)
32 PF10176 DUF2370: Protein of u 21.6 1.4E+02 0.003 27.3 4.1 27 7-33 87-113 (233)
No 1
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=1.2e-62 Score=435.75 Aligned_cols=251 Identities=30% Similarity=0.570 Sum_probs=222.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCeEeecccchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhcC
Q 022812 8 HFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILN 87 (291)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~ 87 (291)
++....+++.++.+.+.|++|..+||.+++|..||.++++.|+..+..+.+...|+.+++.++++||+||+.|+++|..+
T Consensus 14 ~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR~~~ 93 (272)
T COG3752 14 MVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRRTRG 93 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44566677778888999999999999999999999999999998887776666799999999999999999999999999
Q ss_pred cCcchhhHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022812 88 WGEDRRFDEMRSNLGK-------LAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKL 160 (291)
Q Consensus 88 ~geD~Ry~~~r~~~~~-------~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~ie~~AD~Ql~ 160 (291)
+|||+||.++|+++++ ++.+|.+|+++.+++++|+++++.. .+.++.+.|++|++++++|+++|+++|.|+.
T Consensus 94 ~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~-~~~~~~~~d~~g~~iwivg~~fE~lgD~QL~ 172 (272)
T COG3752 94 KGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALN-GPREFGWWDVIGLAIWIVGIVFEALGDAQLW 172 (272)
T ss_pred CCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999998763 5678899999999999999998765 3557899999999999999999999999999
Q ss_pred hcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcC
Q 022812 161 SFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFG 240 (291)
Q Consensus 161 ~f~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sg~~~~E~~~~~kyG 240 (291)
.||++|+||||+|++|+||+|||||||||.++|||+++++++-. ...+++.+|++|+.++.++||+|..||++.|.
T Consensus 173 ~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~--~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~-- 248 (272)
T COG3752 173 VFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW--LLLWAVASPLLMTWLLVHVSGVPPLEEKMLKS-- 248 (272)
T ss_pred HHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh--hHhhhcccHHHHHHHHHHhcCCChHHHHHhcc--
Confidence 99999999999999999999999999999999999999987422 12346689999999999999999555443332
Q ss_pred CchHHHHHHhhCCcccccCCCCCC
Q 022812 241 NMPAYRLYKKTTSPLIPLPPVVYG 264 (291)
Q Consensus 241 ~~~~Y~~Y~~~t~~fiP~~~~~~~ 264 (291)
+|+|++||+||++|+|++|++..
T Consensus 249 -r~~fr~Yq~rt~~F~P~~~k~~~ 271 (272)
T COG3752 249 -RPGFREYQRRTNAFFPRPPKKAL 271 (272)
T ss_pred -cHhHHHHHHHhcccCCCCCcccC
Confidence 39999999999999999998753
No 2
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=3.5e-62 Score=441.44 Aligned_cols=228 Identities=43% Similarity=0.932 Sum_probs=212.7
Q ss_pred HHHHHHhccCeEeecccchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHhhcCcCcchhhHHHHHhhh--
Q 022812 25 FVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLG-- 102 (291)
Q Consensus 25 ~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~~geD~Ry~~~r~~~~-- 102 (291)
|++|..++|+++||++||++++++++.++..+++.+.|++++++++++||+||+.|+++|..+++||+||+++|++++
T Consensus 2 w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~ 81 (235)
T PF06966_consen 2 WIISLATRNESIVDILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEW 81 (235)
T ss_pred eeehHhhCCCCEEECcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcc
Confidence 678999999999999999999999999988888889999999999999999999999999888899999999999863
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCcc
Q 022812 103 ----KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFW 178 (291)
Q Consensus 103 ----~~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~~~g~li~~Glw 178 (291)
+++.+|++|+++++++++|+++++..+.+++++..|++|++++++|+.+|++||.||.+||++|+|+||+|++|+|
T Consensus 82 ~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 82 FWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 5778899999999999999999887555567899999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhC
Q 022812 179 KYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTT 252 (291)
Q Consensus 179 ~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t 252 (291)
+||||||||||+++|+|+++++.+...+..++++++|+++++++++++|+|++|+++.||||++|+|+||||+|
T Consensus 162 ~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~~pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 162 RYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAIIGPLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred eeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 99999999999999999999988765444467899999999999999999999999999999999999999997
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=3.1e-52 Score=368.48 Aligned_cols=255 Identities=61% Similarity=1.076 Sum_probs=214.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhccCeEee-cccchHHHHHHHHHHHHh----------CC----------------
Q 022812 6 DSHFLALTAIVTVGYQLLFFVITALFKFDKVTD-FAGSTNFIIIALLTLILK----------GS---------------- 58 (291)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~w~~~~~~~a~~~~~~~----------~~---------------- 58 (291)
+.+......++...+|.++|.+-...|.++..| .+.+..|++.+++++..+ ..
T Consensus 6 ~s~~a~~~vav~~~l~~i~f~~t~l~~~~~~tD~~ant~~Fvi~~vLt~vlgl~~~s~w~~d~~W~ilp~~~~~~f~~~~ 85 (311)
T KOG4650|consen 6 ASDAAKWKVAVSVYLQFIFFVITALFKFDQVTDFFANTTNFVILAVLTLVLGLWGVSVWTKDRLWHILPTAFSLHFLFYG 85 (311)
T ss_pred cCchhceeeeeeccHHHHHHHHHHHhccchHHHHHcCCchHHHHHHHHHHHHhccccceecccceeechHHHHHHHhhcc
Confidence 344455556677788889999999999999999 777777888888776552 11
Q ss_pred ----chhHHHHHHHHHHHHHHHHhHHHHHh-hcCcC-cchhhHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhh
Q 022812 59 ----WHFRQVVLTFLAVVWGLRLALFLLMR-ILNWG-EDRRFDEMRSNLGK------LAIFWIFQAVWVWTVSLPVTVVN 126 (291)
Q Consensus 59 ----~~~r~~l~~~lv~~W~~RL~~~l~~R-~~~~g-eD~Ry~~~r~~~~~------~~~~~~~Q~~~~~l~~lP~~~~~ 126 (291)
.+.|+++++.++++|++|||++.++| ++.+| ||+||+++|++.+| ++.+|++|+++++.+++|+|+++
T Consensus 86 l~n~~~~R~mIl~~L~~vWs~RLt~ny~rr~~~~wG~ED~Rf~d~R~~~gK~~~~~~~f~~~ifQ~v~l~~v~lPlyiv~ 165 (311)
T KOG4650|consen 86 LYNIASRRQMILTFLVVVWSLRLTYNYLRRGILQWGAEDRRFDDVRQNIGKWIYLFHLFYFWIFQAVWLWTVSLPLYIVN 165 (311)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcchheee
Confidence 23599999999999999999999999 67888 99999999999998 77889999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCc-ccccCccccccCcchHHHHHHHHHHHHHhcC
Q 022812 127 ASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK---NSPENRGK-WCNVGFWKYSRHPNYFGEIFLWWGIFVASTP 202 (291)
Q Consensus 127 ~~~~~~~l~~~~~ig~~l~~~G~~ie~~AD~Ql~~f~---~~~~~~g~-li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~ 202 (291)
++..+..+++.|++|+.+++.|+++|+.||+||.+|+ .+++|.|| .|++|+|||||||||+||++.|||+++++.+
T Consensus 166 ~~d~~r~f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~ 245 (311)
T KOG4650|consen 166 ASDGGRAFGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP 245 (311)
T ss_pred ecCCccccChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence 8765556999999999999999999999999999998 56678888 9999999999999999999999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccc-cCCCCCCCC
Q 022812 203 VLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIP-LPPVVYGNL 266 (291)
Q Consensus 203 ~~~~~~~~~~~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP-~~~~~~~~~ 266 (291)
...|..|..+.++++.++++.+.+ ..|+...||| |.|+.|||+|++||| +.|......
T Consensus 246 ~~egl~wtvi~~lv~~~~l~~~t~---lie~~~v~~~---~aYR~Yqktts~~ip~~f~sh~d~~ 304 (311)
T KOG4650|consen 246 VLEGLEWTVIAGLVFLTLLLLFTS---LIELLEVEKY---PAYRVYQKTTSRFIPRLFPSHWDNV 304 (311)
T ss_pred hhccchHHHHHHHHHHHHHHHHHh---hhhhhhhhhh---HHHHHHHhcccccccccchhhHhcC
Confidence 877766766777777776666654 4555556788 899999999999999 555444333
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.83 E-value=4.6e-20 Score=179.83 Aligned_cols=160 Identities=24% Similarity=0.303 Sum_probs=114.7
Q ss_pred Ccc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022812 89 GED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV--DVIGWIMWSVGVSIEAIADQQKLSFK 163 (291)
Q Consensus 89 geD---~Ry~~~r~~~~~~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~l~~~--~~ig~~l~~~G~~ie~~AD~Ql~~f~ 163 (291)
.|| ..+|...++.|-...++-+-.+....++.+.|++.+ + .++++. ...-.++.++|+.+...||.||.+||
T Consensus 253 ~E~~~l~t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~-p--~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~FR 329 (432)
T PF01222_consen 253 NEEGYLTTMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDH-P--VELSWPTYAAAILALGLVGYYIFRGSNSQKNRFR 329 (432)
T ss_pred hhhhhheeeeeeEcCccceeehhhHhhhhHhhhcceeEEEeC-C--ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHhc
Confidence 565 456777777774433333222232333333344433 2 234444 22334567899999999999999999
Q ss_pred CCCC-------------CCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchH
Q 022812 164 NSPE-------------NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPL 230 (291)
Q Consensus 164 ~~~~-------------~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sg~~~ 230 (291)
++|+ +..|++.+|.|+++|||||+||+++.+++++.+.-. +.+....|+++++++++.+ ..
T Consensus 330 ~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~----~~~pyfy~~~~~~lL~hR~--~R 403 (432)
T PF01222_consen 330 RNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFS----SILPYFYPIFFTILLIHRA--RR 403 (432)
T ss_pred CCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHhhhH--HH
Confidence 7642 234799999999999999999999999988765321 2456678888888888774 88
Q ss_pred HHHHHHHHcCCchHHHHHHhhCC-cccccC
Q 022812 231 LEESADKKFGNMPAYRLYKKTTS-PLIPLP 259 (291)
Q Consensus 231 ~E~~~~~kyG~~~~Y~~Y~~~t~-~fiP~~ 259 (291)
+|++|.+||| ++|+||+++|| ++||++
T Consensus 404 D~~rC~~KYG--~~W~~Yc~~Vpy~~iP~i 431 (432)
T PF01222_consen 404 DEERCRKKYG--KDWDEYCKRVPYRIIPGI 431 (432)
T ss_pred HHHHHHHhhC--HHHHHHHHhCCEEEeCCc
Confidence 8999999999 99999999998 799874
No 5
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.5e-17 Score=143.31 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 022812 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (291)
Q Consensus 135 ~~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~---~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~ 211 (291)
.+...+|..+..+|..+...+..++.+... +++++++++++|+|+++|||.|+|.++..+|..+...+ ++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~------~~~ 140 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGS------LWA 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHh------HHH
Confidence 456788889999999999999999866532 23456789999999999999999999999998755322 323
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccCC
Q 022812 212 ILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 260 (291)
Q Consensus 212 ~~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~~ 260 (291)
+++.+.....+ +.-.+..||+.+.+++| ++|+||++||++++|++.
T Consensus 141 l~~~~~~~~~~-~~~~i~~EEr~L~~~fg--~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 141 LLIFVVLVALL-FLFRIREEERYLRAEFG--DEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHHhh--HHHHHHHHhCCccCCCCC
Confidence 22222222222 11236888888999999 899999999999999864
No 6
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.74 E-value=3.2e-18 Score=163.05 Aligned_cols=183 Identities=21% Similarity=0.328 Sum_probs=123.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHhhcCcCcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 022812 57 GSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPS 133 (291)
Q Consensus 57 ~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~~geD---~Ry~~~r~~~~~~~~~~~~Q~~~~~l~~lP~~~~~~~~~~~~ 133 (291)
+..++..+++..+..++..- .-++|| .-+|.-+++.|-+..++-+-.+.....+...|+..+ +.+
T Consensus 227 G~vs~amvlv~~~qllYv~d---------~~w~E~~~l~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~h---pv~ 294 (428)
T KOG1435|consen 227 GKVSPAMVLVNSFQLLYVFD---------ALWNEELVLTTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSH---PVE 294 (428)
T ss_pred CcCChHHHHHHHHHHHHHHH---------HHhhhhhhcchhhhhccCcceeeeehhhcccceeeecceeeEEEC---ccc
Confidence 34455555555554444322 224565 445666777664444443322222222222233332 234
Q ss_pred CcHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC-------------CCCCcccccCccccccCcchHHHHHHHHHHHHH
Q 022812 134 VQAVDVIGW-IMWSVGVSIEAIADQQKLSFKNSP-------------ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVA 199 (291)
Q Consensus 134 l~~~~~ig~-~l~~~G~~ie~~AD~Ql~~f~~~~-------------~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~ 199 (291)
+++.-..++ ++.+.|+.+...||.||..||+++ .+.+++.++|.|+++|||||+||++..+++++.
T Consensus 295 l~~~~a~~i~~l~l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp 374 (428)
T KOG1435|consen 295 LGWPMAVGILVLLLLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLP 374 (428)
T ss_pred cchHHHHHHHHHHHhheeEeeccchhHHHHhcCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHh
Confidence 555444444 667889999999999999999863 235789999999999999999999999888876
Q ss_pred hcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCC-cccccC
Q 022812 200 STPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTS-PLIPLP 259 (291)
Q Consensus 200 ~~~~~~~~~~~~~~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~-~fiP~~ 259 (291)
+.- + +.++.+.+++++++|++. ...+|.+|.+||| ++|+||++++| +++|..
T Consensus 375 ~gf---~-s~lpyfy~iyf~~LLvhR--~~RDe~rC~~KYG--~~W~~Yc~~VpyriiP~V 427 (428)
T KOG1435|consen 375 CGF---N-SPLPYFYPIYFTLLLVHR--AARDEHRCRSKYG--EDWEEYCRKVPYRILPYV 427 (428)
T ss_pred ccC---C-CCcchHHHHHHHHHHHHH--HhhhHHHHHHHHh--hhHHHHHhhCCcccCCCC
Confidence 531 1 123556788888888876 4788999999999 99999999997 788864
No 7
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.56 E-value=2.9e-14 Score=112.89 Aligned_cols=99 Identities=25% Similarity=0.451 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---C--CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHH
Q 022812 138 DVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 212 (291)
Q Consensus 138 ~~ig~~l~~~G~~ie~~AD~Ql~~f~~~---~--~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~ 212 (291)
..+|..+.++|..+...+-.++...... + +++++++++|+|+++|||.|+|.++.++|+++...+ ++.+
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s------~~~l 76 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGS------WLGL 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCc------HHHH
Confidence 5789999999999999998888765532 1 345679999999999999999999999999987532 2222
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchHH
Q 022812 213 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAY 245 (291)
Q Consensus 213 ~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y 245 (291)
+..+...+ +.....+..||+.+.++|| ++|
T Consensus 77 ~~~~~~~~-~~~~~~~~~EE~~L~~~fG--~~Y 106 (106)
T PF04191_consen 77 LLAVLAFL-LYYIFIIRFEERFLERRFG--EEY 106 (106)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHhC--cCC
Confidence 22222222 2222224578888999999 665
No 8
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.47 E-value=3.9e-13 Score=119.77 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022812 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (291)
Q Consensus 136 ~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (291)
+...+|..+++.|.+++..+|.-+.+.|++.+++-|+.+.|+|.|+-+||||||++.|+|+++.+.+ +-++...
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws------~p~~aFa 220 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWS------LPALAFA 220 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhh------HHHHHHH
Confidence 4678999999999999999999999999987777899999999999999999999999999987643 2122222
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 216 l~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
++ + +.+..+..+... +.|- +.++||.|..+.+||++
T Consensus 221 ~f-t--~~~l~pRA~ahH---~WY~--~kFe~YPk~RkAlIPfv 256 (257)
T KOG1638|consen 221 FF-T--ICNLGPRAYAHH---KWYL--KKFEDYPKNRKALIPFV 256 (257)
T ss_pred HH-H--HHHhhHHHHHHH---HHHH--HhhccCCccceeecccc
Confidence 22 2 223333333322 3342 44589999999999985
No 9
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=9.7e-13 Score=113.80 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022812 140 IGWIMWSVGVSIEAIADQQKLSF-----KNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (291)
Q Consensus 140 ig~~l~~~G~~ie~~AD~Ql~~f-----~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (291)
.|+.+..+|-+...+|..+.... ++++..+++++++|+|+|+|||-|.|-++-|.|..++-.+ .++++
T Consensus 85 ~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~n------pis~v- 157 (201)
T KOG2628|consen 85 LGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCN------PISLV- 157 (201)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhC------HHHHH-
Confidence 45555555655555555554321 2234556789999999999999999988777776654322 22222
Q ss_pred HHHHHHHHHHHh-CchHHHHHHHHHcCCchHHHHHHhhCCcccccCC
Q 022812 215 PIFLTLLLLFIS-GIPLLEESADKKFGNMPAYRLYKKTTSPLIPLPP 260 (291)
Q Consensus 215 pl~~~~ll~~~s-g~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~~ 260 (291)
++..++..+++ .++.+|+.+.+-+| ++|.||+|+|+.=||+.+
T Consensus 158 -~f~~V~w~ff~~Ri~~EE~~Li~fFg--~~Y~eY~kkV~sGiPfi~ 201 (201)
T KOG2628|consen 158 -AFLLVVWRFFADRIKEEEKYLISFFG--SSYVEYAKKVPSGIPFIK 201 (201)
T ss_pred -HHHHHHHHHHhhhhhHHHHHHHHHhh--HHHHHHHHhCCcCCCCCC
Confidence 22334455554 35666677889999 999999999987799764
No 10
>PLN02392 probable steroid reductase DET2
Probab=99.35 E-value=5.8e-12 Score=115.07 Aligned_cols=109 Identities=24% Similarity=0.294 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022812 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (291)
Q Consensus 136 ~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (291)
+..++|++++++|..++..+|.++.+.|+++ ++.++.+.|+|+++.+|||+||++.|.|+++++.+ +.+....
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s------~~~~~F~ 222 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWS------WAGFGFF 222 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 4568999999999999999999999999754 45579999999999999999999999999987632 2111111
Q ss_pred HHHHHHHHHHhC-chHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 216 IFLTLLLLFISG-IPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 216 l~~~~ll~~~sg-~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
+. + ...... .....+...|||| +||.++.+++||++
T Consensus 223 ~~-~--~~nl~~rA~~~hkwY~~kFg-----~~ypk~RkaiIPfi 259 (260)
T PLN02392 223 LY-T--CSNLVPRACANHKWYLEKFG-----EDYPKGRKAVIPFL 259 (260)
T ss_pred HH-H--HHHHHHHHHHHHHHHHHHcc-----ccccCCCeEecCcc
Confidence 11 1 111110 1222333455554 37888889999985
No 11
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.29 E-value=2.5e-11 Score=102.70 Aligned_cols=111 Identities=20% Similarity=0.400 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022812 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (291)
Q Consensus 135 ~~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (291)
....++|++++++|...+..+|.++.+.|++.+++.++.+.|+|+++.+|||++|++.|.|+++++.+ +.+...
T Consensus 39 ~~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~------~~~~~f 112 (150)
T PF02544_consen 39 SPRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGS------WPSYAF 112 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhh------hhhHHH
Confidence 35678999999999999999999999888776666779999999999999999999999999987632 111111
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 215 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 215 pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
.++. ....+ +... ...+.|- +.++||.++..++||++
T Consensus 113 ~~~~---~~~l~--~~A~-~~h~wY~--~~F~~yp~~R~~lIPfi 149 (150)
T PF02544_consen 113 ALFV---VVNLS--PRAV-QTHRWYK--KKFKEYPKNRKALIPFI 149 (150)
T ss_pred HHHH---HHHHH--HHHH-HHHHHHH--HHCccccCCCeEecCcc
Confidence 1111 11111 1111 1223452 56689999999999985
No 12
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.21 E-value=7.7e-11 Score=92.24 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC---CCCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 022812 143 IMWSVGVSIEAIADQQKLSFKNS---PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (291)
Q Consensus 143 ~l~~~G~~ie~~AD~Ql~~f~~~---~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~ 200 (291)
+++++|..+...|-.++.++-+. ..++++++|+|+||++|||||+|.++...|.....
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll 63 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLL 63 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHH
Confidence 45788999999999998654332 23466899999999999999999766556554443
No 13
>PLN02560 enoyl-CoA reductase
Probab=99.12 E-value=1.3e-09 Score=102.45 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022812 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (291)
Q Consensus 136 ~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~-~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (291)
...++|++++++|...+..+|.++++.|++ .+++.++...|+++++-+|||++|++.|+|+++++.+ +.+++.
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~------~~~~~F 265 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQT------VAGYLF 265 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHcc------HHHHHH
Confidence 345899999999999999999999999976 4445579999999999999999999999999998632 111111
Q ss_pred HHHHHHHHHHHhC-chHHHHHHHHHcCCchHHHHHHhhCCccccc
Q 022812 215 PIFLTLLLLFISG-IPLLEESADKKFGNMPAYRLYKKTTSPLIPL 258 (291)
Q Consensus 215 pl~~~~ll~~~sg-~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~ 258 (291)
.++. ...... ....++...++|+|.....+|.+|..+++|+
T Consensus 266 ~~~~---~~~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~ 307 (308)
T PLN02560 266 LAVA---AAIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPF 307 (308)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHhccCccccccCCCceEeCCCc
Confidence 1111 111111 1223455666665322234587766666665
No 14
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=99.01 E-value=2.9e-09 Score=99.60 Aligned_cols=113 Identities=14% Similarity=0.223 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHH
Q 022812 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVI 212 (291)
Q Consensus 135 ~~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~--~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~ 212 (291)
++.+++|++++++|...+..+|..+.+.|+++ +++.++.+.|+|+++-+|||++|++.|.|+++++.+. ...++.+
T Consensus 208 ~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~--~~~~~l~ 285 (323)
T PLN03164 208 GWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGT--DLTIWLL 285 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCc--hHHHHHH
Confidence 34568999999999999999999999998543 2345699999999999999999999999999876321 0111111
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 213 LGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 213 ~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
+ +++ ....+ ..-.| ..+.|. ++++||.++...+||++
T Consensus 286 ~--~~v---~~nL~-~~A~~--tHkWY~--kkF~dYPk~RkAIIPfI 322 (323)
T PLN03164 286 F--GFV---VANLT-FAAAE--THRWYL--QKFENYPRNRYAIIPFV 322 (323)
T ss_pred H--HHH---HHHHH-HHHHH--HHHHHH--HhccccccCceEecCcc
Confidence 1 111 11111 11112 223442 45567999999999985
No 15
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=6.4e-07 Score=75.98 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=66.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccccCccccccCcchHH-HHHHHHHHHHHhcCccCchh
Q 022812 133 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EIFLWWGIFVASTPVLDGAE 208 (291)
Q Consensus 133 ~l~~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~---~~~g~li~~Glw~~sRHPNYfG-e~l~w~G~~l~~~~~~~~~~ 208 (291)
..++...+|+++.++...+...+-.++.++-+.+ -+.++.+++|+||+.||||||- .+.-=.|+.+.+- .
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~------A 139 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQ------A 139 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHH------H
Confidence 4567778899999999999999999998876543 3567899999999999999999 4444556666652 2
Q ss_pred HHH--HHHHHHHHHHHHHHhCchHHHHHHHH
Q 022812 209 WLV--ILGPIFLTLLLLFISGIPLLEESADK 237 (291)
Q Consensus 209 ~~~--~~~pl~~~~ll~~~sg~~~~E~~~~~ 237 (291)
|.+ +.+|+. .+++++ .++-||+.+.+
T Consensus 140 ~~Ta~l~~p~y--a~~L~v-RIr~EekaL~~ 167 (172)
T COG1755 140 WYTALLFSPIY--ALLLYV-RIRQEEKALAE 167 (172)
T ss_pred HHHHHHHHHHH--HHHHhh-hhhHHHHHHHH
Confidence 433 345543 333433 24555554543
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=97.84 E-value=0.00084 Score=62.01 Aligned_cols=109 Identities=17% Similarity=0.341 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHH
Q 022812 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILG 214 (291)
Q Consensus 137 ~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~--~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~ 214 (291)
.+++|.+++..|-.=+.-++.++.+-|++|. .+..+++.|+++++-.|||++|+++..|++..... ..++.+++
T Consensus 193 ~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~----~~iwLv~~ 268 (304)
T KOG1640|consen 193 LQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPD----LTIWLVFG 268 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCc----hHHHHHHH
Confidence 6788999999998888888888887777654 23457899999999999999999999996654321 12223333
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 215 PIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 215 pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
-++ ...+ ..-.|.+ +-| .+.+++|.+....+||++
T Consensus 269 ~V~-----~N~t-~aA~~Th--~wY--~~kF~~yp~~R~AiiPfl 303 (304)
T KOG1640|consen 269 WVA-----ANLT-YAALETH--RWY--LKKFENYPKNRHAIIPFL 303 (304)
T ss_pred HHH-----HHHH-HHHHHHH--HHH--HHhhccCccccccccccc
Confidence 222 1111 1222322 223 245689999999999974
No 17
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.67 E-value=6.5e-05 Score=67.87 Aligned_cols=105 Identities=12% Similarity=0.207 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cccC-ccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHH
Q 022812 139 VIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKW-CNVG-FWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPI 216 (291)
Q Consensus 139 ~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~~~g~l-i~~G-lw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~pl 216 (291)
.+|++.+++..+.+.-.+.-+++.|....++.++ ..+| ++.++-+|||+-|+..|+|+.++.-+ + .+.+
T Consensus 189 ~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~------l---~a~l 259 (297)
T KOG1639|consen 189 KLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQC------L---AAYL 259 (297)
T ss_pred hhhhHHHhhhhhcceeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHH------H---HHHH
Confidence 5666666665555555555566666543434444 3556 89999999999999999999887521 1 1111
Q ss_pred HHHHHHHHHhCchHHH--HHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 217 FLTLLLLFISGIPLLE--ESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 217 ~~~~ll~~~sg~~~~E--~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
+. .++...|.- +.-.++|- +|+.+|.++...+||+.
T Consensus 260 Fl-----~vg~aqMtiWA~~Kh~~yl--KeFp~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 260 FL-----TVGAAQMTIWAKGKHRRYL--KEFPDYPRRRKIIIPFV 297 (297)
T ss_pred HH-----HHHHHHHHHHHHhhhHhHh--hhcccCCccccccCCCC
Confidence 11 111112221 11224563 78899999999999974
No 18
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=96.68 E-value=0.0057 Score=53.89 Aligned_cols=94 Identities=20% Similarity=0.342 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHH
Q 022812 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGP 215 (291)
Q Consensus 136 ~~~~ig~~l~~~G~~ie~~AD~Ql~~f~~~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~p 215 (291)
+...+...++..++++-..+..+...|. +++++|||++.|..+ |..-=+.. +.. .... .+++.
T Consensus 68 ~~~~l~~~lm~~a~il~~~a~~~~~~~~-------------i~r~~RHP~l~g~~l-WA~aHLl~-nGd-~~~~-lLFg~ 130 (191)
T PF07298_consen 68 WLRHLANLLMLLAFILLVAALFPPNPFS-------------IYRITRHPMLLGVLL-WALAHLLA-NGD-LASL-LLFGG 130 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCcchH-------------HHHHhcCchHHHHHH-HHHHHhhh-cCc-HHHH-HHHHH
Confidence 4455666777777776665554221111 999999999999754 53211221 111 1112 23333
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCc
Q 022812 216 IFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSP 254 (291)
Q Consensus 216 l~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~ 254 (291)
.. ...+-+....|++ .+ +| ++|++|+++|+.
T Consensus 131 ~~----~~al~~~~~~~rr-~~-~g--~~~~~~~~~~s~ 161 (191)
T PF07298_consen 131 FL----AWALIGIILIDRR-RR-FG--DAWRAYPRRTSI 161 (191)
T ss_pred HH----HHHHHHHHHHHHh-hc-cc--cccccccCCCCC
Confidence 22 2223356777888 55 87 789999999874
No 19
>COG4094 Predicted membrane protein [Function unknown]
Probab=79.55 E-value=2.1 Score=38.00 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=43.2
Q ss_pred ccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHHHHHHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhh
Q 022812 172 WCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLVILGPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKT 251 (291)
Q Consensus 172 li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~~~~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~ 251 (291)
.-.+++=+.+|||.-.|..+ |. ++=.-.+. ...+.++ .+. +++..+.++...|++..+||| +++..=+++
T Consensus 98 ~~~g~Ii~itRHP~l~g~~i-Wa-laHll~nG-d~~Svll-fgg----f~l~~~~~~~~~~rR~r~r~g--~a~~~~~~~ 167 (219)
T COG4094 98 LYEGRIIRITRHPQLLGVVI-WA-LAHLLANG-DTFSVLL-FGG----FLLWAVVGVWSGDRRARKRYG--EAFVAPVQV 167 (219)
T ss_pred ccCCceEEEecCchhHHHHH-HH-HHHhhccC-ceeeHHH-HHH----HHHHHHHHhhhhhhhhhcccC--cceeeeecc
Confidence 44556778999999888753 32 21111111 1111222 222 222334457888999999999 777776666
Q ss_pred CCccccc
Q 022812 252 TSPLIPL 258 (291)
Q Consensus 252 t~~fiP~ 258 (291)
|++ +|+
T Consensus 168 ts~-~pf 173 (219)
T COG4094 168 TSR-IPF 173 (219)
T ss_pred ccc-cch
Confidence 664 453
No 20
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=75.35 E-value=8.3 Score=32.85 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---C--CCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 022812 139 VIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (291)
Q Consensus 139 ~ig~~l~~~G~~ie~~AD~Ql~~f~~~---~--~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~ 200 (291)
..+..++.+|-++...+-+++..=.+. . ... .-+|+=++++.+||+|-|..+..+|.++.-
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~ 132 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWV 132 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHh
Confidence 578888999999988888887542221 0 011 256777899999999999999999988763
No 21
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=48.06 E-value=1.2e+02 Score=26.29 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC--CCCCcccccCccccccCcchHHHHHHHHHHHHHh
Q 022812 137 VDVIGWIMWSVGVSIEAIADQQKLS---FKNSP--ENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVAS 200 (291)
Q Consensus 137 ~~~ig~~l~~~G~~ie~~AD~Ql~~---f~~~~--~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~ 200 (291)
..-+|.+++..|.++...+...+.- |-.|- --+..=++.=++..+-+|+|-|..+..+|+++.-
T Consensus 97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~ 165 (208)
T KOG4142|consen 97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMH 165 (208)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHc
Confidence 3456777777777766555544421 11110 0011234445799999999999999999999975
No 22
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=38.44 E-value=23 Score=28.43 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=16.7
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022812 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (291)
Q Consensus 235 ~~~kyG~~~~Y~~Y~~~t~~fiP~ 258 (291)
..++| |.|++||++|.+=||-
T Consensus 89 ~~~~~---p~~~~yq~~t~R~ipv 109 (113)
T TIGR00026 89 VVRLY---PRYGRYQSRTDRPIPV 109 (113)
T ss_pred HHHHC---cCHHHHHhhCCCcccE
Confidence 34566 7899999999987774
No 23
>COG3162 Predicted membrane protein [Function unknown]
Probab=34.80 E-value=2.3e+02 Score=22.45 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=32.7
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCC-CCcHHHHHHHHHHHHHHHHHHHH
Q 022812 91 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNAS-----DRDP-SVQAVDVIGWIMWSVGVSIEAIA 155 (291)
Q Consensus 91 D~Ry~~~r~~~~~~~~~~~~Q~~~~~l~~lP~~~~~~~-----~~~~-~l~~~~~ig~~l~~~G~~ie~~A 155 (291)
..||.+++++..+|... +.-..+++.++.|++.+... +..+ ..++...+|...++.++++..+-
T Consensus 12 ~p~f~eLv~kr~~Fa~~-ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~IY 81 (102)
T COG3162 12 NPRFRELVRKRRRFAVP-LTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGIY 81 (102)
T ss_pred CHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHHH
Confidence 47899998876554211 11122333344444443211 1111 24455567777777777765553
No 24
>PF15113 TMEM117: TMEM117 protein family
Probab=32.50 E-value=76 Score=30.80 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=49.5
Q ss_pred ccCeEeecccchHHHHHHHHH-HHH-hCCchhHHHHHHHHHHHHHHHHhHHHHHhhcCcCcchhhHHHHHhhhhHHHHHH
Q 022812 32 KFDKVTDFAGSTNFIIIALLT-LIL-KGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWI 109 (291)
Q Consensus 32 ~~~~~~D~~w~~~~~~~a~~~-~~~-~~~~~~r~~l~~~lv~~W~~RL~~~l~~R~~~~geD~Ry~~~r~~~~~~~~~~~ 109 (291)
++|+-+++.|-.-- .++ -+- ++++..-+.++-++.+++|++.+.|++.|.+ -|.|-|-+.+|++.|.+...|+
T Consensus 38 ~tEa~v~vvGn~fs----F~~~kyP~~~gw~~LKv~lwllai~~GL~~GKfl~H~~L-fg~~~rlkmf~ed~Gswm~mF~ 112 (415)
T PF15113_consen 38 QTEANVIVVGNCFS----FVCNKYPPGGGWRALKVLLWLLAIFTGLIAGKFLFHQRL-FGQLLRLKMFREDHGSWMTMFL 112 (415)
T ss_pred ccceeEEEEccEEE----EEEecCCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhcccCCceehHHH
Confidence 45666776663311 110 111 3455556667777999999999999997754 2556777888888776555554
Q ss_pred HHHHHHH
Q 022812 110 FQAVWVW 116 (291)
Q Consensus 110 ~Q~~~~~ 116 (291)
.-.+..+
T Consensus 113 stil~lF 119 (415)
T PF15113_consen 113 STILFLF 119 (415)
T ss_pred HHHHHHH
Confidence 4433333
No 25
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=31.13 E-value=1.3e+02 Score=21.63 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=36.2
Q ss_pred CcCChhhHHHHHHHHHHHHHHHHHHHHHhccCeEeecccchHHHHHHHHHHHHhC
Q 022812 3 TVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKG 57 (291)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a~~~~~~~~ 57 (291)
+|+..|-|..++++...++++.+.+|...-+-++= +|.--++.++..++.++
T Consensus 6 ~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Grih---GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 6 KVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGRIH---GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHcc
Confidence 45677788888999999999999999776666654 44444455555555444
No 26
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=26.75 E-value=1.3e+02 Score=28.91 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCC-C-C----CCcHHHHHHHHHHHHHHHHHHHHHH---------HH--HhcCCC----CC
Q 022812 109 IFQAVWVWTVSLPVTVVNASDR-D-P----SVQAVDVIGWIMWSVGVSIEAIADQ---------QK--LSFKNS----PE 167 (291)
Q Consensus 109 ~~Q~~~~~l~~lP~~~~~~~~~-~-~----~l~~~~~ig~~l~~~G~~ie~~AD~---------Ql--~~f~~~----~~ 167 (291)
+.+++.-.+..+|++...+..- + | --+.+.++.++..+.|.++-...-. |+ ..+|++ ++
T Consensus 208 fi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgED 287 (405)
T COG1133 208 FINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGED 287 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCC
Confidence 4566666666788887654321 1 1 1134555665555666655444432 32 234431 11
Q ss_pred CC--Cc-ccccCccccccCcchHHHHH
Q 022812 168 NR--GK-WCNVGFWKYSRHPNYFGEIF 191 (291)
Q Consensus 168 ~~--g~-li~~Glw~~sRHPNYfGe~l 191 (291)
|+ .+ --..-+++=+|| |||-.-.
T Consensus 288 h~drA~p~T~~ELf~nvr~-NYfRLyf 313 (405)
T COG1133 288 HADRATPPTVRELFSNVRK-NYFRLYF 313 (405)
T ss_pred chhhcCCchHHHHHHHHHH-HHHHHHH
Confidence 11 11 233458888898 8876543
No 27
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=25.77 E-value=60 Score=26.72 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.3
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022812 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (291)
Q Consensus 235 ~~~kyG~~~~Y~~Y~~~t~~fiP~ 258 (291)
..++| |.|++|+++|.+=||-
T Consensus 107 ~~~~~---p~~~~y~~~t~R~ipv 127 (132)
T PF04075_consen 107 LVAAY---PGYADYQARTGRRIPV 127 (132)
T ss_dssp HHHHS---THHHHHHHHCSSTS-E
T ss_pred HHHHC---cChHHhcccCCCEeeE
Confidence 34667 8999999999987873
No 28
>COG3462 Predicted membrane protein [Function unknown]
Probab=25.58 E-value=2.4e+02 Score=22.79 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=8.4
Q ss_pred hHHHHHHHHHcC
Q 022812 229 PLLEESADKKFG 240 (291)
Q Consensus 229 ~~~E~~~~~kyG 240 (291)
-..|+.+.|||.
T Consensus 88 sRA~eIlkER~A 99 (117)
T COG3462 88 SRAEEILKERYA 99 (117)
T ss_pred cHHHHHHHHHHh
Confidence 345677888884
No 29
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=23.95 E-value=56 Score=22.95 Aligned_cols=12 Identities=25% Similarity=0.952 Sum_probs=9.9
Q ss_pred CcchHHHHHHHH
Q 022812 183 HPNYFGEIFLWW 194 (291)
Q Consensus 183 HPNYfGe~l~w~ 194 (291)
||||.++..=|+
T Consensus 2 HP~fv~D~~K~F 13 (54)
T PF09124_consen 2 HPQFVPDKVKWF 13 (54)
T ss_dssp -THHHHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999999998875
No 30
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=22.30 E-value=1.8e+02 Score=28.06 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=14.5
Q ss_pred cccCcchHHHHHHHHHHHHH
Q 022812 180 YSRHPNYFGEIFLWWGIFVA 199 (291)
Q Consensus 180 ~sRHPNYfGe~l~w~G~~l~ 199 (291)
+.|++.|+|-.+-=.++...
T Consensus 275 flR~~ey~gl~lRL~~i~~l 294 (386)
T PF05975_consen 275 FLRSGEYLGLYLRLTLIGAL 294 (386)
T ss_pred HHhCccHHHHHHHHHHHHHH
Confidence 56999999988665555444
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=22.22 E-value=1.1e+02 Score=29.01 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCeEeecccchHHHHHH
Q 022812 7 SHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIA 49 (291)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~a 49 (291)
.+++..++.+-+++-.-++.=..+.+.+++--..|-++++=-.
T Consensus 42 ~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~ 84 (367)
T KOG1582|consen 42 TQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFL 84 (367)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHH
Confidence 3567777777777777777777888889998889988876433
No 32
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=21.58 E-value=1.4e+02 Score=27.30 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 022812 7 SHFLALTAIVTVGYQLLFFVITALFKF 33 (291)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~ 33 (291)
+..+...++|++..|+++|++.+++.+
T Consensus 87 ~~~F~~n~~vs~~Fq~iGFllty~l~t 113 (233)
T PF10176_consen 87 DFSFVWNFLVSFSFQWIGFLLTYCLHT 113 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344788899999999999998876544
Done!