Query 022812
Match_columns 291
No_of_seqs 237 out of 1543
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 2.6E-24 8.8E-29 188.1 19.6 115 135-259 75-193 (194)
2 3r5y_A Putative uncharacterize 68.1 2.8 9.5E-05 34.2 2.5 21 235-258 121-141 (147)
3 3r5z_A Putative uncharacterize 61.5 4.5 0.00015 32.9 2.6 21 235-258 119-139 (145)
4 3h96_A F420-H2 dependent reduc 61.3 4.6 0.00016 32.8 2.6 21 235-258 115-137 (143)
5 3r5l_A Deazaflavin-dependent n 58.8 1.5 5E-05 34.7 -0.8 21 235-258 97-117 (122)
6 1vk5_A Expressed protein; stru 12.6 55 0.0019 26.2 0.6 19 232-253 35-53 (157)
7 2l9u_A Receptor tyrosine-prote 8.6 3.4E+02 0.012 16.5 3.0 23 65-87 12-34 (40)
8 2jz3_A Suppressor of cytokine 8.5 1.7E+02 0.0056 18.1 1.6 16 264-279 23-38 (40)
9 2ket_A Cathelicidin-6; antimic 7.9 2E+02 0.0069 15.9 1.6 13 93-105 2-14 (27)
10 2jp3_A FXYD domain-containing 7.0 4.7E+02 0.016 18.2 3.5 10 142-151 26-35 (67)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.93 E-value=2.6e-24 Score=188.09 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--CCCCCCcccccCccccccCcchHHHHHHHHHHHHHhcCccCchhHHH
Q 022812 135 QAVDVIGWIMWSVGVSIEAIADQQKLS-FKN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWLV 211 (291)
Q Consensus 135 ~~~~~ig~~l~~~G~~ie~~AD~Ql~~-f~~--~~~~~g~li~~Glw~~sRHPNYfGe~l~w~G~~l~~~~~~~~~~~~~ 211 (291)
.+...+|.+++++|+.++..||.|+.+ |+. +++++++++++|+|++||||||+|+++.|+|+++...+ +++
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s------~~~ 148 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSN------WVV 148 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTC------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhcc------HHH
Confidence 567899999999999999999999855 443 34577889999999999999999999999999887532 333
Q ss_pred HH-HHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCcccccC
Q 022812 212 IL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 259 (291)
Q Consensus 212 ~~-~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~fiP~~ 259 (291)
++ ++++++++ +..+++.||+.+.++|| ++|++|+++|+++||++
T Consensus 149 ~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 149 LIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 33 33333332 23568999999999999 99999999999999975
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=68.13 E-value=2.8 Score=34.24 Aligned_cols=21 Identities=38% Similarity=0.804 Sum_probs=17.8
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022812 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (291)
Q Consensus 235 ~~~kyG~~~~Y~~Y~~~t~~fiP~ 258 (291)
+.++| |.|.+||++|.+-||-
T Consensus 121 ~~~~~---P~y~~Yq~~t~R~IPv 141 (147)
T 3r5y_A 121 AVRAY---PTYQEYQDNTRRLIPV 141 (147)
T ss_dssp HHHHC---THHHHHHHTCSSCCCE
T ss_pred HHHHC---CCHHHHHhhcCCcCcE
Confidence 45677 8999999999998884
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=61.48 E-value=4.5 Score=32.91 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=17.5
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022812 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (291)
Q Consensus 235 ~~~kyG~~~~Y~~Y~~~t~~fiP~ 258 (291)
+.++| |.|++||++|.+-||-
T Consensus 119 ~~~~~---p~y~~Yq~~t~R~iPv 139 (145)
T 3r5z_A 119 AVEVW---PDYAEYQTKTTREIPV 139 (145)
T ss_dssp HHHHC---THHHHHGGGCSSCCCE
T ss_pred HHHHC---cCHHHHHHhcCCcCce
Confidence 44667 8999999999988884
No 4
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=61.32 E-value=4.6 Score=32.78 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=17.5
Q ss_pred HHHHcCCchHHHHHHhhCC--ccccc
Q 022812 235 ADKKFGNMPAYRLYKKTTS--PLIPL 258 (291)
Q Consensus 235 ~~~kyG~~~~Y~~Y~~~t~--~fiP~ 258 (291)
..++| |.|++||++|. +-||-
T Consensus 115 ~~~~~---P~y~~Yq~~t~~~R~iPv 137 (143)
T 3h96_A 115 QARRY---PGFADYEKKTAGIRTIPV 137 (143)
T ss_dssp HHHHC---THHHHHHHHTTTTCCCCE
T ss_pred HHHHC---cCHHHHHHhcCCCCcccE
Confidence 44667 89999999999 88884
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=58.76 E-value=1.5 Score=34.74 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=17.9
Q ss_pred HHHHcCCchHHHHHHhhCCccccc
Q 022812 235 ADKKFGNMPAYRLYKKTTSPLIPL 258 (291)
Q Consensus 235 ~~~kyG~~~~Y~~Y~~~t~~fiP~ 258 (291)
+.++| |.|++||++|.+-||-
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv 117 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPI 117 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCE
T ss_pred HHHHC---cCHHHHHhhcCCcccE
Confidence 45778 8899999999988884
No 6
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=12.58 E-value=55 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHcCCchHHHHHHhhCC
Q 022812 232 EESADKKFGNMPAYRLYKKTTS 253 (291)
Q Consensus 232 E~~~~~kyG~~~~Y~~Y~~~t~ 253 (291)
|..+.+|= +.|++|+|+.|
T Consensus 35 e~~liRrA---EmYQ~YMK~iP 53 (157)
T 1vk5_A 35 EGSLLRRA---EMYQDYMKQVP 53 (157)
T ss_dssp -CTTHHHH---HHHHHHHHTSC
T ss_pred chhhhhHH---HHHHHHHHhCC
Confidence 44455552 88999999976
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.59 E-value=3.4e+02 Score=16.47 Aligned_cols=23 Identities=26% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcC
Q 022812 65 VLTFLAVVWGLRLALFLLMRILN 87 (291)
Q Consensus 65 l~~~lv~~W~~RL~~~l~~R~~~ 87 (291)
++.+++++.-.==+.|++||..+
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34445555444445788888654
No 8
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=8.53 E-value=1.7e+02 Score=18.08 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=12.9
Q ss_pred CCCcHHHHHHhhhccc
Q 022812 264 GNLPWWLKTILFELPL 279 (291)
Q Consensus 264 ~~~~~~~k~~~~~~p~ 279 (291)
-.+|..+|+++.|+|-
T Consensus 23 LpLP~~Lk~yL~ey~y 38 (40)
T 2jz3_A 23 TQLPGPIREFLDQYDA 38 (40)
T ss_pred CCCCHHHHHHHHHCCC
Confidence 3688999999988873
No 9
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=7.91 E-value=2e+02 Score=15.92 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=8.9
Q ss_pred hhHHHHHhhhhHH
Q 022812 93 RFDEMRSNLGKLA 105 (291)
Q Consensus 93 Ry~~~r~~~~~~~ 105 (291)
||..+|+++.+++
T Consensus 2 rfkrfrkkfkklf 14 (27)
T 2ket_A 2 RFKRFRKKFKKLF 14 (27)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6777787766543
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.04 E-value=4.7e+02 Score=18.16 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 022812 142 WIMWSVGVSI 151 (291)
Q Consensus 142 ~~l~~~G~~i 151 (291)
.+++++|+++
T Consensus 26 ~vLfi~GI~i 35 (67)
T 2jp3_A 26 GLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455666654
Done!