Query 022812
Match_columns 291
No_of_seqs 237 out of 1543
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 11:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022812.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022812hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 33.9 9.4 0.00068 24.0 1.8 12 183-194 2-13 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 28.1 6.8 0.0005 22.4 0.3 12 181-192 1-12 (34)
3 d1vk5a_ a.220.1.1 (A:) Hypothe 9.9 56 0.0041 23.3 1.6 11 243-253 8-18 (121)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 8.9 1.4E+02 0.01 15.4 2.6 8 243-250 16-23 (27)
5 d1tzyc_ a.22.1.1 (C:) Histone 7.1 41 0.003 23.4 -0.2 17 244-260 10-26 (95)
6 d3ctda1 a.80.1.2 (A:258-420) U 6.8 94 0.0069 23.5 1.8 18 79-96 22-39 (163)
7 d2e74f1 f.23.25.1 (F:1-32) Pet 6.6 2.1E+02 0.015 15.2 3.9 21 10-30 5-25 (32)
8 d1utga_ a.101.1.1 (A:) Uterogl 5.9 2.6E+02 0.019 17.9 3.5 41 214-254 3-43 (70)
9 d1ytqa2 b.11.1.1 (A:104-194) b 5.5 35 0.0026 23.2 -1.4 19 172-190 41-59 (91)
10 d1okia2 b.11.1.1 (A:145-236) b 5.1 36 0.0026 23.2 -1.6 19 172-190 42-60 (92)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=33.87 E-value=9.4 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=10.8
Q ss_pred CcchHHHHHHHH
Q 022812 183 HPNYFGEIFLWW 194 (291)
Q Consensus 183 HPNYfGe~l~w~ 194 (291)
||||.++..=|+
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999998875
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.07 E-value=6.8 Score=22.40 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=8.6
Q ss_pred ccCcchHHHHHH
Q 022812 181 SRHPNYFGEIFL 192 (291)
Q Consensus 181 sRHPNYfGe~l~ 192 (291)
+|||.|--++.-
T Consensus 1 ~rhpkyKT~lC~ 12 (34)
T d1rgoa2 1 TRHPKYKTELCR 12 (34)
T ss_dssp CCCTTTTCSBCH
T ss_pred CCCCCccchhcc
Confidence 689988766544
No 3
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.85 E-value=56 Score=23.33 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.6
Q ss_pred hHHHHHHhhCC
Q 022812 243 PAYRLYKKTTS 253 (291)
Q Consensus 243 ~~Y~~Y~~~t~ 253 (291)
+.|++|+|+.|
T Consensus 8 emYQ~yMk~iP 18 (121)
T d1vk5a_ 8 EMYQDYMKQVP 18 (121)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 67999999976
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.92 E-value=1.4e+02 Score=15.35 Aligned_cols=8 Identities=50% Similarity=1.003 Sum_probs=4.9
Q ss_pred hHHHHHHh
Q 022812 243 PAYRLYKK 250 (291)
Q Consensus 243 ~~Y~~Y~~ 250 (291)
.+|++|++
T Consensus 16 aayqqykr 23 (27)
T d2e74g1 16 AAYQQYKR 23 (27)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhcC
Confidence 45667664
No 5
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=7.11 E-value=41 Score=23.39 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=13.9
Q ss_pred HHHHHHhhCCcccccCC
Q 022812 244 AYRLYKKTTSPLIPLPP 260 (291)
Q Consensus 244 ~Y~~Y~~~t~~fiP~~~ 260 (291)
|=+.||+.|..+||..|
T Consensus 10 EIRk~Qkst~lLIpk~p 26 (95)
T d1tzyc_ 10 EIRRYQKSTELLIRKLP 26 (95)
T ss_dssp HHHHHHHCCSCCSCHHH
T ss_pred HHHHHhCCccccccccc
Confidence 44689999999999766
No 6
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=6.78 E-value=94 Score=23.50 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=12.9
Q ss_pred HHHHHhhcCcCcchhhHH
Q 022812 79 LFLLMRILNWGEDRRFDE 96 (291)
Q Consensus 79 ~~l~~R~~~~geD~Ry~~ 96 (291)
.|++.|.+..|||.+|-.
T Consensus 22 ly~larml~~Gedp~~i~ 39 (163)
T d3ctda1 22 LYWLANMVEAGEDPNFIF 39 (163)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCchHHHH
Confidence 455667777899998843
No 7
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.59 E-value=2.1e+02 Score=15.21 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022812 10 LALTAIVTVGYQLLFFVITAL 30 (291)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~ 30 (291)
.+-++++.|++..++|.++..
T Consensus 5 il~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHH
Confidence 456777888888888887654
No 8
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.91 E-value=2.6e+02 Score=17.88 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHHcCCchHHHHHHhhCCc
Q 022812 214 GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSP 254 (291)
Q Consensus 214 ~pl~~~~ll~~~sg~~~~E~~~~~kyG~~~~Y~~Y~~~t~~ 254 (291)
+|.+.-.+=.++.|++-+-....++|-++++=.+=..+-+.
T Consensus 3 CPa~~~~v~~fl~GT~eeY~~~vk~y~~~~~~le~~~~lK~ 43 (70)
T d1utga_ 3 CPRFAHVIENLLLGTPSSYETSLKEFEPDDTMKDAGMQMKK 43 (70)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 35454455556678887756677888777766555444433
No 9
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.46 E-value=35 Score=23.24 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.5
Q ss_pred ccccCccccccCcchHHHH
Q 022812 172 WCNVGFWKYSRHPNYFGEI 190 (291)
Q Consensus 172 li~~Glw~~sRHPNYfGe~ 190 (291)
-+.+|.|-.--||||-|..
T Consensus 41 ~V~~G~Wv~Ye~~nf~G~~ 59 (91)
T d1ytqa2 41 RVQSGTWVGYQYPGYRGLQ 59 (91)
T ss_dssp EECSSCEEEEEETTTEEEE
T ss_pred EecCCCEEEEecCCcEEEE
Confidence 3678999999999999875
No 10
>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.07 E-value=36 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.5
Q ss_pred ccccCccccccCcchHHHH
Q 022812 172 WCNVGFWKYSRHPNYFGEI 190 (291)
Q Consensus 172 li~~Glw~~sRHPNYfGe~ 190 (291)
-+..|.|-..-||||-|..
T Consensus 42 ~V~~G~Wv~ye~~nf~G~~ 60 (92)
T d1okia2 42 KVSSGTWVGYQYPGYRGYQ 60 (92)
T ss_dssp EEEESEEEEEEETTTEEEE
T ss_pred EEeCCCEEEEECCCCEEEE
Confidence 4688999999999998864
Done!