BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022813
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
Length = 299
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 207/290 (71%), Positives = 247/290 (85%), Gaps = 2/290 (0%)
Query: 2 WIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSW 61
W R L+L QL+NG L WGKEGH+ +CKIAE Y E+ +AAVK+LLP SA+GDLA+VCSW
Sbjct: 8 WFARVLVLTQLINGALCWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSW 67
Query: 62 ADEVRFHM--RWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGY 119
DE++ H RW+SPLHYVDTPD+ CNY+YCRDCHD+ ++RCVTGAI+NYTMQL S
Sbjct: 68 PDEIKHHWQWRWTSPLHYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSAS 127
Query: 120 QDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTM 179
++S ++ YNLTEALMFLSHFIGD+HQPLHVGF+GD+GGNTITVRWYRRKTNLHHVWD M
Sbjct: 128 ENSDTIVHYNLTEALMFLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNM 187
Query: 180 IIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACK 239
II+SALKTYY+ + +MI+++Q N+T+ WSNDV WE+C NQT CPN YASES++LACK
Sbjct: 188 IIESALKTYYNKSLPLMIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACK 247
Query: 240 FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
+AYRNATPGTTL DDYFL+RLPIVEKRLAQ GIRLAATLNRIFSS+ K A
Sbjct: 248 YAYRNATPGTTLGDDYFLSRLPIVEKRLAQGGIRLAATLNRIFSSKPKHA 297
>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1
Length = 296
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/294 (62%), Positives = 236/294 (80%), Gaps = 3/294 (1%)
Query: 1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGD-LANVC 59
+WI L+L LV+G L WGK+GH+ +CK+AEG+ +D +AAVK+LLP+S +G LA+ C
Sbjct: 3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62
Query: 60 SWADEVR--FHMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKS 117
SW DE++ +W+S LHYV+TP++ CNY+YCRDCHD+ K+ CVTGAI+NYT QL S
Sbjct: 63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122
Query: 118 GYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWD 177
++S ++ YNLTEAL+FLSH++GDVHQPLH GF+GD GGNTI V WY K+NLHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182
Query: 178 TMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLA 237
MIIDSAL+TYY+S + MIQ++Q + +GWSNDV SW++C +Q CPN YASES+ LA
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLA 242
Query: 238 CKFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQL 291
CK+AYRNATPGTTL D+YFL+RLP+VEKRLAQ GIRLAATLNRIFS++ K+A L
Sbjct: 243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIFSAKPKLAGL 296
>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1
Length = 294
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/292 (63%), Positives = 225/292 (77%), Gaps = 7/292 (2%)
Query: 1 MWIWRALILLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCS 60
MWI L+L QLVNG L WG GH+A+CKIA+ Y ED + AVK+LLP+SA G+LA VCS
Sbjct: 7 MWIVSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCS 66
Query: 61 WADEVRF--HMRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSG 118
W DE++ RW+S LH+ DTPD+ CNY+Y RDC K+ CVTGAI+NYT QL S
Sbjct: 67 WPDEIKKLPQWRWTSALHFADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMST 121
Query: 119 YQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDT 178
++S S+ YNLTEALMFLSH++GD+HQPLH GFIGD GGN I V WY ++TNLH VWD
Sbjct: 122 SENSQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDD 181
Query: 179 MIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLAC 238
MII+SAL+TYY+S + MI +Q + +GWSNDV SWE+C NQT CPN YASES+ LAC
Sbjct: 182 MIIESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLAC 241
Query: 239 KFAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIAQ 290
K+AYRNAT GTTL D YF++RLP+VEKRLAQ GIRLA TLNRIFS++ K+A+
Sbjct: 242 KYAYRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIFSAKRKLAR 293
>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1
Length = 290
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/274 (58%), Positives = 199/274 (72%), Gaps = 2/274 (0%)
Query: 9 LLQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFH 68
LL + GWGKEGH ICKIA+ L E A AVKELLP+SAEGDL+++C WAD V+F
Sbjct: 18 LLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFR 77
Query: 69 MRWSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKY 128
WSSPLHY++TPD C+Y+Y RDC D G K RCV GAIYNYT QL S + S +Y
Sbjct: 78 YHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQY 136
Query: 129 NLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTY 188
NLTEAL+F+SHF+GD+HQPLHV + DKGGNTI V WY RK NLHH+WD+ II++A
Sbjct: 137 NLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADL 196
Query: 189 YDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPG 248
Y+S + M+ ++++NIT W++ V WE C +T CP+ YASE + AC +AY+ T G
Sbjct: 197 YNSALEGMVDALKKNITTEWADQVKRWETC-TKKTACPDIYASEGIQAACDWAYKGVTEG 255
Query: 249 TTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIF 282
TLED+YF +RLPIV +RLAQ G+RLAATLNRIF
Sbjct: 256 DTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIF 289
>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1
Length = 305
Score = 312 bits (799), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 5/280 (1%)
Query: 13 VNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVR--FHMR 70
V+ V W KEGH C+IA+ L V+ LLPD +GDL+ +C W D++R + R
Sbjct: 23 VSSVRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYR 82
Query: 71 WSSPLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNL 130
W+S LHY+DTPD C+Y+Y RDCHD G K+ CV GAI N+T QL+ Y + S +YN+
Sbjct: 83 WTSHLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQH-YGEGTSDRRYNM 141
Query: 131 TEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYD 190
TEAL+FLSHF+GD+HQP+HVGF D+GGNTI +RWY+ K+NLHHVWD II +ALK YD
Sbjct: 142 TEALLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYD 201
Query: 191 SDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
++ ++ + +++NIT+G W +D+SSW C N+ CP+ YASES+ LACK+ Y+ G
Sbjct: 202 KNLDLLQEDLEKNITNGLWHDDLSSWTEC-NDLIACPHKYASESIKLACKWGYKGVKSGE 260
Query: 250 TLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
TL ++YF TRLPIV KR+ Q G+RLA LNR+FS IA
Sbjct: 261 TLSEEYFNTRLPIVMKRIVQGGVRLAMILNRVFSDDHAIA 300
>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=nucS PE=1 SV=2
Length = 287
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 137/291 (47%), Gaps = 35/291 (12%)
Query: 10 LQLVNGVLGWGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF-- 67
L L GWG GH + IA+ ++ + + +L D + LANV +WAD ++
Sbjct: 12 LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71
Query: 68 HMRWSSPLHYVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSIS 124
+S P H++D P C Y RDC S G C AI NYT +I
Sbjct: 72 AGEFSKPYHFIDAQDNPPQSCGVDYDRDC-GSAG----CSISAIQNYT---------NIL 117
Query: 125 VEKYNLTE---ALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMII 181
+E N +E AL F+ H IGD+HQPLH + + GGN I V + TNLHH+WDT +
Sbjct: 118 LESPNGSEALNALKFVVHIIGDIHQPLHDENL-EAGGNGIDVTYDGETTNLHHIWDTNMP 176
Query: 182 DSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNG--YASESVSLAC 238
+ A Y S + I G +S+ SW + + + +A+++ + C
Sbjct: 177 EEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVC 236
Query: 239 K------FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFS 283
AY N+ T L +Y+ P+ E+ +A++G RLAA L+ I S
Sbjct: 237 STVLDDGLAYINS---TDLSGEYYDKSQPVFEELIAKAGYRLAAWLDLIAS 284
>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1
Length = 270
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 24/280 (8%)
Query: 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
WG GH + +A+ Y++ +A + + +L S+ LA++ SWADE R +WS+ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77 YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
++D P CN Y RDC S C AI NYT ++ S+ N EA
Sbjct: 61 FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
L FL HFIGD+ QPLH GGN I V + NLH WDT + + + SD
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG-WSNDVSSW---ENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
+++ +NI G ++ + W +N + T +AS++ +L C +
Sbjct: 170 ESWAKTLVQNIESGNYTAQATGWIKGDNISEPITTATR-WASDANALVCTVVMPHGAAAL 228
Query: 250 TLED---DYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI 286
D Y+ + + +E ++A+ G RLA +N I S+I
Sbjct: 229 QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEI 268
>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1
Length = 270
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 24/280 (8%)
Query: 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRFHM--RWSSPLH 76
WG GH + +A+ Y++ +A + + +L S+ LA++ SWADE R +WS+ LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 77 YVDT---PDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
++D P CN Y RDC S C AI NYT ++ S+ N EA
Sbjct: 61 FIDAEDNPPTNCNVDYERDCGSS-----GCSISAIANYTQRVSDS-----SLSSENHAEA 110
Query: 134 LMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDI 193
L FL HFIGD+ QPLH GGN I V + NLH WDT + + + SD
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 194 AVMIQSIQRNITDG-WSNDVSSW---ENCANNQTVCPNGYASESVSLACKFAYRNATPGT 249
+++ +NI G ++ W +N + T +AS++ +L C +
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATR-WASDANALVCTVVMPHGAAAL 228
Query: 250 TLED---DYFLTRLPIVEKRLAQSGIRLAATLNRIFSSQI 286
D Y+ + + +E ++A+ G RLA +N I S+I
Sbjct: 229 QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEI 268
>sp|B0D5R2|COQ4_LACBS Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Laccaria
bicolor (strain S238N-H82 / ATCC MYA-4686) GN=COQ4 PE=3
SV=1
Length = 297
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 74 PLHYVDTPDFMCNYKYCRDCHDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEA 133
P+HY+D P+ + R+CHD C+ N +L Y E NL
Sbjct: 158 PVHYIDDPELAYVMQRYRECHDFY----HCICNLPVNVESELALKY-----FEFANLGLP 208
Query: 134 LMFLSHFIGDV------HQPLHVGFI------GDKGGNTITVRWYRR 168
+ LS +G V Q L F+ G + ITV W R
Sbjct: 209 MTLLSALVGPVRLTPQKRQRLFAEFVPWALKCGGSSRSLITVYWEER 255
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3
SV=1
Length = 335
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASE 232
+H + +IID + T Y+S A+ I QR I S S N A N T+C E
Sbjct: 199 NHTPEIIIIDE-IGTEYESQAAISIS--QRGIRLIGSAHSSDLFNLAKNPTLCKLVGGIE 255
Query: 233 SVSLACKFAYRNATPGTTLEDDY---FLTRLPIVEKRLAQSGIRLAATLNRIFSSQIKIA 289
SV+L+ A T T LE F + I +KR + + +++ I ++ +
Sbjct: 256 SVTLSDTQAILRKTKKTILERKGCSCFNATIEINKKRTVKVYTSVEQSIDAILEGRVNNS 315
Query: 290 QL 291
Q+
Sbjct: 316 QI 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,669,373
Number of Sequences: 539616
Number of extensions: 4414305
Number of successful extensions: 8641
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8611
Number of HSP's gapped (non-prelim): 13
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)