Query 022813
Match_columns 291
No_of_seqs 114 out of 520
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02265 S1-P1_nuclease: S1/P1 100.0 7.3E-68 1.6E-72 475.6 13.4 246 19-283 1-252 (252)
2 smart00770 Zn_dep_PLPC Zinc de 96.6 0.011 2.3E-07 52.8 8.0 113 22-151 38-154 (241)
3 KOG3189 Phosphomannomutase [Li 53.3 6.2 0.00013 34.4 0.9 40 126-175 190-236 (252)
4 PF00882 Zn_dep_PLPC: Zinc dep 38.1 61 0.0013 26.0 4.6 48 127-183 79-126 (163)
5 COG0158 Fbp Fructose-1,6-bisph 25.7 31 0.00066 32.0 0.8 40 105-150 210-249 (326)
6 PRK12750 cpxP periplasmic repr 21.8 1.1E+02 0.0024 25.8 3.4 25 24-48 42-66 (170)
7 KOG0095 GTPase Rab30, small G 21.4 2.3E+02 0.005 23.7 5.0 24 220-243 92-115 (213)
8 PF07438 DUF1514: Protein of u 21.1 53 0.0011 23.1 1.1 14 1-14 1-14 (66)
9 PHA01365 hypothetical protein 19.9 44 0.00094 24.6 0.5 10 136-145 81-90 (91)
10 COG3046 Uncharacterized protei 19.5 3.9E+02 0.0085 26.1 6.8 44 101-144 196-241 (505)
No 1
>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3.1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.
Probab=100.00 E-value=7.3e-68 Score=475.61 Aligned_cols=246 Identities=41% Similarity=0.766 Sum_probs=190.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHHHhCCCCCCCChhccccccccccc---cCCCCccccccCCCC--CCCCccccCCC
Q 022813 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF---HMRWSSPLHYVDTPD--FMCNYKYCRDC 93 (291)
Q Consensus 19 W~~~GH~~Va~IA~~~L~~~~~~~l~~lL~~~~~~~l~~~a~WaD~ir~---~~~~~~~wHy~d~p~--~~~~~~~~~dc 93 (291)
||..|||+||+||+++|+|+++++|+++|+.....+|+++|+|||+||. .++++++|||+|+|. .++++.+.++|
T Consensus 1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~ 80 (252)
T PF02265_consen 1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC 80 (252)
T ss_dssp --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence 9999999999999999999999999999987555699999999999995 579999999999998 45566555677
Q ss_pred CCcCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCc-cCCCCCCCCCeEEEecCCCcCCc
Q 022813 94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLH-VGFIGDKGGNTITVRWYRRKTNL 172 (291)
Q Consensus 94 ~~~~~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH-~~~~~D~GGN~~~v~~~g~~~nL 172 (291)
++++|++++|.+++++|++.+. +..+++++||||+||||||||||| ++++||+|||+++|+++|+++||
T Consensus 81 -----~~~~~~~~ai~~~~~~L~~~~~-----~~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL 150 (252)
T PF02265_consen 81 -----PNGGCVVSAIKNYTSRLKDTST-----SKAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL 150 (252)
T ss_dssp ------TT--HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred -----CCCCcHHHHHHHHHHHHhccCC-----CcHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence 4689999999999999999987 468899999999999999999999 67899999999999999999999
Q ss_pred hHHHhhhhHhhHhhhcCCchHHHHHHHHHHhhccCccchhhhhhhccCCCCCChhhhHHHHHHHHHHHcccCCCCCCCCC
Q 022813 173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDGWSNDVSSWENCANNQTVCPNGYASESVSLACKFAYRNATPGTTLE 252 (291)
Q Consensus 173 H~~WDs~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~Wa~ES~~~a~~~vY~~~~~~~~ls 252 (291)
|++||++|+++.....+..++.++++.+.+.+. .+....|.+. ||.+|+.||++++|+++|+..+++.+|+
T Consensus 151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~---~~~~~~~~~~------~~~~Wa~ES~~la~~~~y~~~~~~~~l~ 221 (252)
T PF02265_consen 151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKIT---KESFKSWQPG------DPEDWANESHELACNIVYPGIKNGTELS 221 (252)
T ss_dssp HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHH---H----HHHHH------HHHHHHHHHHHHHHHTTSTT-SGGGS-T
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHhhcc---chhhhhhhhh------hHHHHHHHHHHHHHHHHhccCCCCCccC
Confidence 999999999887654444556677777766653 2344555532 8999999999999999998888888899
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Q 022813 253 DDYFLTRLPIVEKRLAQSGIRLAATLNRIFS 283 (291)
Q Consensus 253 ~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~ 283 (291)
++|++++++++++||++||+|||.+||++|+
T Consensus 222 ~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~ 252 (252)
T PF02265_consen 222 DEYYTKARPVAEEQLAKAGYRLAAVLNEIFD 252 (252)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999985
No 2
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=96.55 E-value=0.011 Score=52.81 Aligned_cols=113 Identities=22% Similarity=0.204 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhccCCHH----HHHHHHHhCCCCCCCChhccccccccccccCCCCccccccCCCCCCCCccccCCCCCcC
Q 022813 22 EGHFAICKIAEGYLTED----ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSV 97 (291)
Q Consensus 22 ~GH~~Va~IA~~~L~~~----~~~~l~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~wHy~d~p~~~~~~~~~~dc~~~~ 97 (291)
.-|..|..=|...|... ....| ++|... ...+.+=..|||.-...+.- ..+||.| |....+|-+.
T Consensus 38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFyd-p~~~~~yL~~------- 106 (241)
T smart00770 38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYD-PDTGKNYLPG------- 106 (241)
T ss_pred cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcccccc-ccccccC-CCCCCCCCCC-------
Confidence 56999999999999554 22211 233221 13577788899985533321 2569999 4433443211
Q ss_pred CCCCCcHHHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCccC
Q 022813 98 GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG 151 (291)
Q Consensus 98 ~~~~~~v~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~~ 151 (291)
..........+...-...-... ....--+.|..-.|+++|+-||+|++
T Consensus 107 ---~~~A~~~~~ky~~~A~~~~~~g---~~~~A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 107 ---FSNAKDTGRKYFKLALNEWKKG---NYKKAFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCccccc
Confidence 1122223333333222111100 12334577899999999999999986
No 3
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=53.33 E-value=6.2 Score=34.39 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHH-------HHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCchHH
Q 022813 126 EKYNLTEALMFL-------SHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHV 175 (291)
Q Consensus 126 ~~~~~~~aL~~L-------iHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nLH~~ 175 (291)
.-|++.++|+.| |||.||.- --|||++.+ |..+.+-=|+|
T Consensus 190 ~GWDKtyCLqhle~dgf~~IhFFGDkT---------~~GGNDyEI-f~dprtiGhsV 236 (252)
T KOG3189|consen 190 KGWDKTYCLQHLEKDGFDTIHFFGDKT---------MPGGNDYEI-FADPRTIGHSV 236 (252)
T ss_pred CCcchhHHHHHhhhcCCceEEEecccc---------CCCCCccee-eeCCccccccc
Confidence 468899999876 35555543 459999998 44444444544
No 4
>PF00882 Zn_dep_PLPC: Zinc dependent phospholipase C; InterPro: IPR001531 Bacillus cereus contains a monomeric phospholipase C 3.1.4.3 from EC (PLC) of 245 amino-acid residues that binds three zinc ions []. Although PLC prefers to act on phosphatidylcholine, it also shows weak catalytic activity with sphingomyelin and phosphatidylinositol []. Sequence studies have shown the PLC protein to be similar to the following: Alpha toxin from Clostridium perfringens and Clostridium bifermentans, which are zinc-dependent phospholipases C involved in haemolysis and cell rupture []. Lecithinase C from Listeria monocytogenes, which aids cell-to-cell spread by breaking down the 2-membrane vacuoles that surround the bacterium during transfer []. Each of these proteins is a zinc-dependent enzyme, binding 3 zinc ions per molecule []. The enzymes catalyse the conversion of phosphatidylcholine and water to 1,2-diacylglycerol and choline phosphate [, , ]. In B. cereus, there are nine residues known to be involved in binding the zinc ions: 5 His, 2 Asp, 1 Glu and 1 Trp. These residues are all conserved in the Clostridium alpha-toxin [].; GO: 0004629 phospholipase C activity, 0008270 zinc ion binding; PDB: 2WXU_A 1QMD_A 2WY6_C 1QM6_B 2WXT_A 1KHO_B 1P6E_A 2HUC_A 1P5X_A 2FFZ_A ....
Probab=38.05 E-value=61 Score=26.04 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCccCCCCCCCCCeEEEecCCCcCCchHHHhhhhHhh
Q 022813 127 KYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDS 183 (291)
Q Consensus 127 ~~~~~~aL~~LiHlvGDiHQPLH~~~~~D~GGN~~~v~~~g~~~nLH~~WDs~l~~~ 183 (291)
....++.|.++.|++.|.-. |..+. +.+ ...+....-|...|+.+...
T Consensus 79 ~~~~a~~lG~~~H~~~D~~~--H~~~~---~~~----~~~~~~~~~H~~~E~~ld~~ 126 (163)
T PF00882_consen 79 SKEAAFLLGYLCHYIADSFC--HPVPA---NHN----KIFSGNLLQHRYYETYLDSY 126 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--H---H---TTT----TTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcccc---ccc----cccccchHHHHHHHHHHHHH
Confidence 46789999999999999999 81000 000 02334567899999987543
No 5
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=25.70 E-value=31 Score=32.01 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHccCCCCchhhhhhhHHHHHHHHHHHHhhcCCCCcc
Q 022813 105 TGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHV 150 (291)
Q Consensus 105 ~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~~LiHlvGDiHQPLH~ 150 (291)
..+++.|++.+...... +. |.+.+||..-+|+|+|+=|==
T Consensus 210 ~~~v~~yI~~~~~~~~~-----~~-r~y~~RyigSmVADvHRiL~~ 249 (326)
T COG0158 210 EEGVKKYIKDCFAEDKG-----TR-RPYNMRYIGSMVADVHRILLK 249 (326)
T ss_pred cHHHHHHHHHHhccCCC-----cC-CCcchhhHHHHHHHHHHHHHc
Confidence 36788898888876652 23 889999999999999998853
No 6
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=21.78 E-value=1.1e+02 Score=25.82 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC
Q 022813 24 HFAICKIAEGYLTEDALAAVKELLP 48 (291)
Q Consensus 24 H~~Va~IA~~~L~~~~~~~l~~lL~ 48 (291)
|..-..+..-.||++.+++|+.|..
T Consensus 42 ~~~~~m~~~L~LTdeQk~qik~i~~ 66 (170)
T PRK12750 42 GMDRGIMRQLDLTDAQKEQLKEMRE 66 (170)
T ss_pred cchhhhHhhCCCCHHHHHHHHHHHH
Confidence 3445667788899999999999874
No 7
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.39 E-value=2.3e+02 Score=23.69 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=18.5
Q ss_pred CCCCCChhhhHHHHHHHHHHHccc
Q 022813 220 NNQTVCPNGYASESVSLACKFAYR 243 (291)
Q Consensus 220 ~~~~~~~~~Wa~ES~~~a~~~vY~ 243 (291)
.+...|.-+|..|--++|.+.|..
T Consensus 92 qpsfdclpewlreie~yan~kvlk 115 (213)
T KOG0095|consen 92 QPSFDCLPEWLREIEQYANNKVLK 115 (213)
T ss_pred CcchhhhHHHHHHHHHHhhcceEE
Confidence 345578899999988888776664
No 8
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=21.12 E-value=53 Score=23.10 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=9.4
Q ss_pred ChHHHHHHHHHhhh
Q 022813 1 MWIWRALILLQLVN 14 (291)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (291)
|||++..++.+++.
T Consensus 1 MWIiiSIvLai~lL 14 (66)
T PF07438_consen 1 MWIIISIVLAIALL 14 (66)
T ss_pred ChhhHHHHHHHHHH
Confidence 89887766655443
No 9
>PHA01365 hypothetical protein
Probab=19.93 E-value=44 Score=24.57 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=8.2
Q ss_pred HHHHHHhhcC
Q 022813 136 FLSHFIGDVH 145 (291)
Q Consensus 136 ~LiHlvGDiH 145 (291)
+|.|||||+.
T Consensus 81 YLahLVGeLN 90 (91)
T PHA01365 81 YLALLVGDLN 90 (91)
T ss_pred eHHhhhhhcc
Confidence 6789999974
No 10
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=19.53 E-value=3.9e+02 Score=26.14 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHHHHccCCCCchhh--hhhhHHHHHHHHHHHHhhc
Q 022813 101 NRCVTGAIYNYTMQLKSGYQDSISV--EKYNLTEALMFLSHFIGDV 144 (291)
Q Consensus 101 ~~~v~~aI~~~~~~L~~~~~~~~~~--~~~~~~~aL~~LiHlvGDi 144 (291)
.+..+..+.+..+++..+.....+. =+.++.+|++.|-|||.|.
T Consensus 196 pd~~vq~v~e~Ve~~f~~~~G~~e~F~wpvtr~~A~~~L~~Fi~~~ 241 (505)
T COG3046 196 PDEIVQEVKERVERLFPDNFGQVEGFGWPVTRTQALRALKHFIADR 241 (505)
T ss_pred CcchhHHHHHHHHhhCCCCCCccccCCCCCCHHHHHHHHHHHHHHh
Confidence 4677899999999998775543221 2457899999999999885
Done!