Your job contains 1 sequence.
>022814
MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG
EIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQILGRTIRVDHVAKYKKKEEEDEETR
QRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKN
DSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFE
ARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022814
(291 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2075676 - symbol:AT3G47120 species:3702 "Arabi... 641 8.8e-63 1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein... 360 1.4e-44 2
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"... 363 1.6e-43 2
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-... 367 3.2e-43 2
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"... 368 2.8e-42 2
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei... 357 3.6e-42 2
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"... 358 5.2e-41 2
ZFIN|ZDB-GENE-050626-88 - symbol:rbmx2 "RNA binding motif... 360 6.6e-41 2
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot... 351 8.4e-41 2
ASPGD|ASPL0000074275 - symbol:AN4665 species:162425 "Emer... 327 2.8e-38 2
UNIPROTKB|Q9Y388 - symbol:RBMX2 "RNA-binding motif protei... 398 4.9e-37 1
UNIPROTKB|G4NKC1 - symbol:MGG_03086 "U2 snRNP component I... 282 1.2e-35 2
DICTYBASE|DDB_G0294559 - symbol:DDB_G0294559 "RNA-binding... 309 5.0e-35 2
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 370 4.6e-34 1
UNIPROTKB|I3LK87 - symbol:RBMX2 "Uncharacterized protein"... 369 5.8e-34 1
WB|WBGene00016245 - symbol:C30B5.4 species:6239 "Caenorha... 307 9.9e-31 2
POMBASE|SPBC887.05c - symbol:cwf29 "RNA-binding protein C... 285 8.6e-30 2
GENEDB_PFALCIPARUM|PFC0865w - symbol:PFC0865w "RNA-bindin... 256 4.7e-29 2
UNIPROTKB|O97318 - symbol:PFC0865w "RNA binding protein, ... 256 4.7e-29 2
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 308 1.7e-27 1
SGD|S000001444 - symbol:IST3 "Component of the U2 snRNP" ... 264 7.8e-23 1
CGD|CAL0001156 - symbol:orf19.1045 species:5476 "Candida ... 205 3.8e-21 2
UNIPROTKB|Q59VP9 - symbol:IST3 "Putative uncharacterized ... 205 3.8e-21 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 156 3.8e-11 1
UNIPROTKB|P08621 - symbol:SNRNP70 "U1 small nuclear ribon... 113 4.5e-11 2
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 168 6.0e-11 2
UNIPROTKB|E2QRU8 - symbol:SNRNP70 "Uncharacterized protei... 113 7.8e-11 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 153 1.0e-10 2
UNIPROTKB|I3LNE5 - symbol:SNRNP70 "Uncharacterized protei... 113 1.0e-10 2
UNIPROTKB|F6V5G7 - symbol:SNRNP70 "Uncharacterized protei... 113 1.2e-10 2
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 113 1.4e-10 2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 151 1.5e-10 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 168 1.5e-10 2
UNIPROTKB|Q1RMR2 - symbol:SNRNP70 "U1 small nuclear ribon... 113 1.9e-10 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 150 1.9e-10 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 149 2.5e-10 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 149 2.5e-10 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 148 3.2e-10 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 148 3.2e-10 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 148 3.2e-10 1
MGI|MGI:98341 - symbol:Snrnp70 "small nuclear ribonucleop... 113 3.2e-10 2
UNIPROTKB|Q66II8 - symbol:snrnp70 "U1 small nuclear ribon... 114 3.6e-10 2
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 165 3.8e-10 2
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 167 4.1e-10 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 147 4.2e-10 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 153 4.3e-10 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 167 4.9e-10 1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 166 5.4e-10 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 5.5e-10 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 5.5e-10 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 5.5e-10 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 146 5.5e-10 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 167 5.5e-10 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 168 5.8e-10 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 168 5.8e-10 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 168 6.0e-10 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 168 6.1e-10 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 168 6.1e-10 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 167 6.3e-10 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 167 6.4e-10 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 167 6.8e-10 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 167 6.8e-10 1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 167 6.9e-10 1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 167 6.9e-10 1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 167 6.9e-10 1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 167 6.9e-10 1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 167 7.1e-10 1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 167 7.1e-10 1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 167 7.1e-10 1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 167 7.2e-10 1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 167 7.5e-10 1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 167 8.2e-10 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 144 9.1e-10 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 144 9.1e-10 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 144 9.1e-10 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 144 9.1e-10 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 144 9.1e-10 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 115 1.4e-09 2
ZFIN|ZDB-GENE-040825-2 - symbol:snrnp70 "small nuclear ri... 116 1.6e-09 2
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 141 2.0e-09 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 141 2.0e-09 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 140 2.6e-09 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 140 2.6e-09 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 140 2.6e-09 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 157 2.7e-09 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 139 3.4e-09 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 127 3.5e-09 2
UNIPROTKB|P09406 - symbol:snrnp70 "U1 small nuclear ribon... 109 3.6e-09 2
UNIPROTKB|B7ZMD9 - symbol:RBMY1D "RNA-binding motif prote... 116 4.3e-09 2
UNIPROTKB|J3KPK3 - symbol:RBMY1E "RNA-binding motif prote... 116 4.3e-09 2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 138 4.4e-09 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 136 7.4e-09 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 136 7.4e-09 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 136 7.4e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 136 7.4e-09 1
FB|FBgn0016978 - symbol:snRNP-U1-70K "small ribonucleopro... 104 7.4e-09 2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 123 1.0e-08 2
DICTYBASE|DDB_G0282873 - symbol:DDB_G0282873 "RNA-binding... 119 1.0e-08 2
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 117 1.0e-08 2
UNIPROTKB|J3KQ82 - symbol:RBMY1J "RNA-binding motif prote... 117 1.1e-08 2
WARNING: Descriptions of 564 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 144/298 (48%), Positives = 171/298 (57%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLTQVK +Q IN++E+DLGISD+ASWHAKYK+SAYVYVGGIPFDLTEGDLLAVF+Q G
Sbjct: 1 MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAXXXXXXX 114
EIVDVNL+RDKGTGK +GFAF+AYEDQR+ NLNGA +LGRTI+VDH
Sbjct: 61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120
Query: 115 XXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEKFE 173
GVCRAFQRGECTRGD CKFSH+E+RAANTG G +DRSS+W H+K
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDK-- 178
Query: 174 GFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRH 233
+ G R G + D + HD + G ED+ S+
Sbjct: 179 ---------NREGRGVCRAFQRGECTRGDSCK----FSHDEKRAATTGWGHEEDRSSKWD 225
Query: 234 SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
D + R + +P E R D D G R D R R
Sbjct: 226 QDKLNGAKKGGTSFGNRGDFKPDVEEKSYRGRGDGDASYGRPKERERVDREDMGPRSR 283
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 72/174 (41%), Positives = 96/174 (55%)
Query: 128 GVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEKFEGF-----SWGKN- 180
GVCRAFQRGECTRGD CKFSH+E+RAA TG G +DRSS+W +K G S+G
Sbjct: 184 GVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRG 243
Query: 181 -------DSSSRATGSGRVALEGNPNQSDR--REEK--RSI-RHDHREKPREDHGRREDK 228
+ S R G G + G P + +R RE+ RS +D +E+ R GR ++
Sbjct: 244 DFKPDVEEKSYRGRGDGDASY-GRPKERERVDREDMGPRSRDAYDMKEQKRS--GRYDNA 300
Query: 229 RSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGD 282
SRRH+D ++ RED R + KR ++ES R+ DR D+ S R D
Sbjct: 301 YSRRHNDEIDYV---REDKGSRAQDWEKR-KAESR-RDRNDREEKDRDSLRRED 349
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 360 (131.8 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 65/113 (57%), Positives = 89/113 (78%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+++ SWH++YK SA+++VGG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
EIV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
Score = 126 (49.4 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 170 EKFEGFSWGKNDSSSR-ATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDK 228
EK EG + + S SR AT + + S + E R+ + +HRE ++ H D
Sbjct: 173 EKTEGQAQAEQPSCSRSATVKEKKDERASRKHSSKTSE-RAQKSEHRES-KKSHSGSPDG 230
Query: 229 RSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRE-DQDRRGGDKSSTGRGDSSSHR 287
RS H+ + E ++R++ + + K R E+E RE ++ R G S RG S
Sbjct: 231 RSSYHARAEDPECKARKEKPKHEHKSASRREAEEKSRERERGRSSGTHSGRHRGHSDGRS 290
Query: 288 HRER 291
HR R
Sbjct: 291 HRSR 294
Score = 91 (37.1 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 31/146 (21%), Positives = 54/146 (36%)
Query: 134 QRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFE----GFSWGKNDSSSRATGS 189
++ C+R K +E+ + +R+ + H + + G G++ +RA
Sbjct: 182 EQPSCSRSATVKEKKDERASRKHSSKTSERAQKSEHRESKKSHSGSPDGRSSYHARAEDP 241
Query: 190 GRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYR 249
A + P + +R RE+ R R R HSD +RSR
Sbjct: 242 ECKARKEKPKHEHKSASRREAEEKSRERERGRSSGTHSGRHRGHSDGRSHRSRSRS---- 297
Query: 250 RDEKRPKRHESESYLREDQDRRGGDK 275
R + RH+ + RE G D+
Sbjct: 298 RSPDKSHRHKKYRHSRERDSYHGSDR 323
Score = 87 (35.7 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 29/118 (24%), Positives = 47/118 (39%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPRED-HGRREDK--RSRRHSD 235
K RA+ +S+ RE K+S H R H R ED ++R+
Sbjct: 193 KEKKDERASRKHSSKTSERAQKSEHRESKKS--HSGSPDGRSSYHARAEDPECKARKEKP 250
Query: 236 NNEFEARSREDHYRRDEKRPKRHESESYL---REDQDRRGGDKSSTGRGDSSSHRHRE 290
+E ++ SR + + +R + S ++ R D R S R SHRH++
Sbjct: 251 KHEHKSASRREAEEKSRERERGRSSGTHSGRHRGHSDGRSHRSRSRSRSPDKSHRHKK 308
Score = 75 (31.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 205 EEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYL 264
+E + H++ +E R+++K + +RS ++DE+ ++H S++
Sbjct: 151 DEDAKLTKKHKKDKKEKKKRKKEKTEGQAQAEQPSCSRSATVKEKKDERASRKHSSKTSE 210
Query: 265 R-EDQDRRGGDKSSTGRGDSSSHRH 288
R + + R KS +G D S H
Sbjct: 211 RAQKSEHRESKKSHSGSPDGRSSYH 235
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 363 (132.8 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 65/113 (57%), Positives = 90/113 (79%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E +LG+++ SWH +YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVELGVAEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
EIV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
Score = 113 (44.8 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 30/101 (29%), Positives = 45/101 (44%)
Query: 191 RVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHYR 249
R + +P+ + R RS D +PR++ + E K S R + E R RE D R
Sbjct: 223 REVRKSHPSSPEVRMTCRSGTEDQEREPRKEKSKHEHKSSSRREER---EDRHRERDRGR 279
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
+ +RH+ S R D+ G S R SHRH++
Sbjct: 280 SSDIHSRRHDRRSEGRHDRGSEGRSHRSRSRSRDKSHRHKK 320
Score = 93 (37.8 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 26/78 (33%), Positives = 35/78 (44%)
Query: 199 NQSDRREEKRSIRHDHREKPRED--HGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK 256
++S R E+R RH R++ R H RR D+RS D E RS H R R K
Sbjct: 259 HKSSSRREEREDRHRERDRGRSSDIHSRRHDRRSEGRHDRGS-EGRS---HRSRSRSRDK 314
Query: 257 RHESESYLREDQDRRGGD 274
H + R +DR +
Sbjct: 315 SHRHKKS-RHSRDRESSN 331
Score = 79 (32.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 25/94 (26%), Positives = 39/94 (41%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARS-REDHYRRDEKRPKRH 258
+ D +K S +H + + RE ++S S RS ED R K +H
Sbjct: 198 KDDPGSKKHSGKHSETGEKGQKSESREVRKSHPSSPEVRMTCRSGTEDQEREPRKEKSKH 257
Query: 259 ESESYLR-EDQDRRGGDKSSTGRGDSSSHRHRER 291
E +S R E+++ R ++ D S RH R
Sbjct: 258 EHKSSSRREEREDRHRERDRGRSSDIHSRRHDRR 291
Score = 60 (26.2 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 26/99 (26%), Positives = 38/99 (38%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSS---RATGSGRVALEGNPNQSDRREEKRSIRH 212
+G Q+R R K E S + + R GR + + + + DRR E R H
Sbjct: 241 SGTEDQEREPRKEKSKHEHKSSSRREEREDRHRERDRGRSS-DIHSRRHDRRSEGR---H 296
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRD 251
D + R H R R + H +R RE R+
Sbjct: 297 DRGSEGRS-HRSRSRSRDKSHRHKKSRHSRDRESSNPRE 334
Score = 57 (25.1 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 23/106 (21%), Positives = 45/106 (42%)
Query: 198 PNQSDRREE-KRSIRH----DHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRD- 251
P S+ +E R ++ H P G +DK +++H + + + + ++D +
Sbjct: 118 PEDSEEMDEVTRELQERGCGTHTPPPSSSEGSEDDKPTKKHKKDKKEKKKKKKDKEKTGR 177
Query: 252 EKRPKRHESESY-----LREDQD----RRGGDKSSTG-RGDSSSHR 287
E + ++ S S ++E D + G S TG +G S R
Sbjct: 178 EVQAEQPASSSLPRSKMIKEKDDPGSKKHSGKHSETGEKGQKSESR 223
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 367 (134.2 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 66/113 (58%), Positives = 90/113 (79%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+++ SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
EIV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHVA
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVA 113
Score = 106 (42.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 37/141 (26%), Positives = 56/141 (39%)
Query: 138 CTRGDGCKFSHNEQRAANTGGGPQDRSSRWG-HEKFEGFSWGKNDSSSRATGSGRVALEG 196
C+R K + +EQ A P +R+ + E+ + S G D + G
Sbjct: 187 CSRSKTVKET-DEQSAKKHSSKPSERAQKSECRERKKSHS-GSPDGRTSCRGRAEEPEWE 244
Query: 197 NPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEA-RSREDHYRRDEKR 254
+ + E K S R + EK R+ D GR S RH ++E + RSR R R
Sbjct: 245 AKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDR 304
Query: 255 PKRHESESYLREDQDRRGGDK 275
RH+ Y E + D+
Sbjct: 305 SHRHKKHRYSHERESFHASDR 325
Score = 95 (38.5 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS-RRHSDNNEFEARSREDHYRRDEK 253
E + + + +R+ + + RE+ + G + + S R ++ E+EA+ +E H + + K
Sbjct: 198 EQSAKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAK-KEKH-KHEHK 255
Query: 254 RPKRHESESYLRE-DQDRRGGDKSSTGRGDSSSHRHRER 291
R E E R+ D+ R G SS G S HR R
Sbjct: 256 PSSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSR 294
Score = 73 (30.8 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 25/97 (25%), Positives = 40/97 (41%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHYRRDEK 253
E + S + + S R E+P + + + K + S E E +SR+ D R
Sbjct: 219 ERKKSHSGSPDGRTSCR-GRAEEPEWEAKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGT 277
Query: 254 RPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
RH S E + R +S + R SHRH++
Sbjct: 278 HSSRHHGHS---EGRSHRSRSRSRS-RSPDRSHRHKK 310
Score = 62 (26.9 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 164 SSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKP-REDH 222
S R G EK G++ + + G EG ++S R RS HR K R H
Sbjct: 258 SRREGEEKSRDKDRGRSSGTHSSRHHGHS--EGRSHRSRSRSRSRSPDRSHRHKKHRYSH 315
Query: 223 GRREDKRS-RRH 233
R S RRH
Sbjct: 316 ERESFHASDRRH 327
Score = 56 (24.8 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 216 EKPREDHGRREDKRSRRHSDNN---EFEARSREDHYRR-DEKRPKRHESESYLREDQDR- 270
+KP++D ++ K+ + ++ E + SR + DE+ K+H S+ R +
Sbjct: 158 KKPKKDKKEKKKKKEKEKTERPVQAELPSCSRSKTVKETDEQSAKKHSSKPSERAQKSEC 217
Query: 271 RGGDKSSTGRGDS-SSHRHR 289
R KS +G D +S R R
Sbjct: 218 RERKKSHSGSPDGRTSCRGR 237
Score = 49 (22.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 16/83 (19%), Positives = 33/83 (39%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ D++E+K+ + E+P + E R E + +S + H + +R ++ E
Sbjct: 161 KKDKKEKKKKKEKEKTERPVQ----AELPSCSRSKTVKETDEQSAKKHSSKPSERAQKSE 216
Query: 260 SESYLREDQDRRGGDKSSTGRGD 282
+ G S GR +
Sbjct: 217 CRERKKSHSGSPDGRTSCRGRAE 239
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 368 (134.6 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 66/113 (58%), Positives = 90/113 (79%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG++D SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
EIV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
Score = 96 (38.9 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 28/88 (31%), Positives = 34/88 (38%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESY 263
R E R R +EKPR H RR R + N R RE RD R + S+ +
Sbjct: 239 RAEDRE-REPRKEKPR--HERRSSSRREEREEKNRERERQRERERDRDRDRARGRSSDRH 295
Query: 264 LREDQDRRGGDKSSTGRGDSSSHRHRER 291
R G S GR S HR +
Sbjct: 296 SSRHNGRSEGH-SRRGRSRSRERSHRRK 322
Score = 95 (38.5 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 30/105 (28%), Positives = 43/105 (40%)
Query: 197 NPNQSDRREEKRSIRHDHREKPRED---HGRREDKRSRRHSDNNEFEARSREDHYRRDEK 253
NP + ++ E R +R H P R ED+ + E RS R+EK
Sbjct: 210 NPERG-QKSEPREVRKHHHSSPEVKTTCRSRAEDREREPRKEKPRHERRSSSRREEREEK 268
Query: 254 RPKRHESESYLRE-DQDR---RGGDKSST---GRGDSSSHRHRER 291
+R R+ D+DR R D+ S+ GR + S R R R
Sbjct: 269 NRERERQRERERDRDRDRARGRSSDRHSSRHNGRSEGHSRRGRSR 313
Score = 92 (37.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 33/100 (33%), Positives = 42/100 (42%)
Query: 195 EGNPNQSDRREEKRSI--RHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDE 252
E P + R E+RS R + EK RE +RE +R R D + RS + H R
Sbjct: 244 EREPRKEKPRHERRSSSRREEREEKNRERERQRERERDR---DRDRARGRSSDRHSSRHN 300
Query: 253 KRPKRHE--SESYLREDQDRRGGDKSSTGRGDS--SSHRH 288
R + H S RE RR + S R S S RH
Sbjct: 301 GRSEGHSRRGRSRSRERSHRRKRARHSRDRDSSNPSDRRH 340
Score = 88 (36.0 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 29/89 (32%), Positives = 39/89 (43%)
Query: 199 NQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR 257
++ + REEK R RE+ R+ D R + S RHS + RS E H RR R R
Sbjct: 260 SRREEREEKNRERERQRERERDRDRDRARGRSSDRHSSRHN--GRS-EGHSRRGRSR-SR 315
Query: 258 HESESYLREDQDRRGGDKSSTGRGDSSSH 286
S R + R D+ S+ D H
Sbjct: 316 ERSH---RRKRARHSRDRDSSNPSDRRHH 341
Score = 64 (27.6 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 195 EGNPNQSDRREEKRSIRHDH---REKPREDHGR-REDKRSRRHSDNN-----EFEARS-R 244
E + D+ + ++ +H PR + ++D S++HS N + E R R
Sbjct: 164 EKKRRKKDKENTDQEVQTEHPVSSSSPRNQMEKEKDDPGSKKHSTKNPERGQKSEPREVR 223
Query: 245 EDHYRRDE-KRPKRHESESYLREDQ-DRRGGDKSSTGRGDSSSHRHRER 291
+ H+ E K R +E RE + ++ ++ S+ R + ++RER
Sbjct: 224 KHHHSSPEVKTTCRSRAEDREREPRKEKPRHERRSSSRREEREEKNRER 272
Score = 55 (24.4 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 214 HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESES-----YLREDQ 268
H G +DK +++ + + + R ++D D++ H S + +++
Sbjct: 139 HTPSVSSSEGSEDDKPPKKYKKDKKEKKRRKKDKENTDQEVQTEHPVSSSSPRNQMEKEK 198
Query: 269 DRRGGDKSSTG---RGDSSSHR 287
D G K ST RG S R
Sbjct: 199 DDPGSKKHSTKNPERGQKSEPR 220
Score = 44 (20.5 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 201 SDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHES 260
S+ R K S D K ++ G S S+ +E + ++ Y++D+K KR +
Sbjct: 113 SNYRAPKDSEEMDDVTKELQEKGCGAHTPSVSSSEGSEDDKPPKK--YKKDKKEKKRRKK 170
Query: 261 ESYLREDQD 269
+ DQ+
Sbjct: 171 DKE-NTDQE 178
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 357 (130.7 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 64/112 (57%), Positives = 89/112 (79%)
Query: 2 NPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE 61
+PLT+VK I +N +E LG+++ SWH++YKDSA++++GG+P++LTEGD++ VF+Q GE
Sbjct: 1 SPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGE 60
Query: 62 IVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
IV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHVA
Sbjct: 61 IVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVA 112
Score = 106 (42.4 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 37/141 (26%), Positives = 56/141 (39%)
Query: 138 CTRGDGCKFSHNEQRAANTGGGPQDRSSRWG-HEKFEGFSWGKNDSSSRATGSGRVALEG 196
C+R K + +EQ A P +R+ + E+ + S G D + G
Sbjct: 186 CSRSKTVKET-DEQSAKKHSSKPSERAQKSECRERKKSHS-GSPDGRTSCRGRAEEPEWE 243
Query: 197 NPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEA-RSREDHYRRDEKR 254
+ + E K S R + EK R+ D GR S RH ++E + RSR R R
Sbjct: 244 AKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDR 303
Query: 255 PKRHESESYLREDQDRRGGDK 275
RH+ Y E + D+
Sbjct: 304 SHRHKKHRYSHERESFHASDR 324
Score = 95 (38.5 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS-RRHSDNNEFEARSREDHYRRDEK 253
E + + + +R+ + + RE+ + G + + S R ++ E+EA+ +E H + + K
Sbjct: 197 EQSAKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAK-KEKH-KHEHK 254
Query: 254 RPKRHESESYLRE-DQDRRGGDKSSTGRGDSSSHRHRER 291
R E E R+ D+ R G SS G S HR R
Sbjct: 255 PSSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSR 293
Score = 73 (30.8 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 25/97 (25%), Positives = 40/97 (41%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHYRRDEK 253
E + S + + S R E+P + + + K + S E E +SR+ D R
Sbjct: 218 ERKKSHSGSPDGRTSCR-GRAEEPEWEAKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGT 276
Query: 254 RPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
RH S E + R +S + R SHRH++
Sbjct: 277 HSSRHHGHS---EGRSHRSRSRSRS-RSPDRSHRHKK 309
Score = 62 (26.9 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 164 SSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKP-REDH 222
S R G EK G++ + + G EG ++S R RS HR K R H
Sbjct: 257 SRREGEEKSRDKDRGRSSGTHSSRHHGHS--EGRSHRSRSRSRSRSPDRSHRHKKHRYSH 314
Query: 223 GRREDKRS-RRH 233
R S RRH
Sbjct: 315 ERESFHASDRRH 326
Score = 56 (24.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 216 EKPREDHGRREDKRSRRHSDNN---EFEARSREDHYRR-DEKRPKRHESESYLREDQDR- 270
+KP++D ++ K+ + ++ E + SR + DE+ K+H S+ R +
Sbjct: 157 KKPKKDKKEKKKKKEKEKTERPVQAELPSCSRSKTVKETDEQSAKKHSSKPSERAQKSEC 216
Query: 271 RGGDKSSTGRGDS-SSHRHR 289
R KS +G D +S R R
Sbjct: 217 RERKKSHSGSPDGRTSCRGR 236
Score = 49 (22.3 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 16/83 (19%), Positives = 33/83 (39%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ D++E+K+ + E+P + E R E + +S + H + +R ++ E
Sbjct: 160 KKDKKEKKKKKEKEKTERPVQ----AELPSCSRSKTVKETDEQSAKKHSSKPSERAQKSE 215
Query: 260 SESYLREDQDRRGGDKSSTGRGD 282
+ G S GR +
Sbjct: 216 CRERKKSHSGSPDGRTSCRGRAE 238
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 358 (131.1 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 64/112 (57%), Positives = 89/112 (79%)
Query: 2 NPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE 61
+PLT+VK I +N +E LG++D SWH++YKDSA++++GG+P++LTEGD++ VF+Q GE
Sbjct: 1 SPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGE 60
Query: 62 IVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
IV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 61 IVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 112
Score = 94 (38.1 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 195 EGNPNQSDRREEKRSI--RHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYR-R 250
E P + R E+RS R + EK RE + GR D+ S RH+ +E +R R R
Sbjct: 243 EREPRKEKPRHERRSSSRREEREEKNRERERGRSSDRHSSRHNGRSEGHSRRGRSRSRER 302
Query: 251 DEKRPK-RHESESYLREDQDRR 271
+R + RH + DRR
Sbjct: 303 SHRRKRARHSRDRDSSNPSDRR 324
Score = 88 (36.0 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 25/98 (25%), Positives = 35/98 (35%)
Query: 197 NPNQSDRREEKRSIRHDHREKPRED---HGRREDKRSRRHSDNNEFEARSREDHYRRDEK 253
NP + ++ E R +R H P R ED+ + E RS R+EK
Sbjct: 209 NPERG-QKSEPREVRKHHHSSPEVKTTCRSRAEDREREPRKEKPRHERRSSSRREEREEK 267
Query: 254 RPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+R S R G + + RG S S R
Sbjct: 268 NRERERGRSSDRHSSRHNGRSEGHSRRGRSRSRERSHR 305
Score = 87 (35.7 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 31/90 (34%), Positives = 37/90 (41%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFE-ARSREDHYRRDEKRPKRHE--S 260
R E R R +EKPR + R +R R N E E RS + H R R + H
Sbjct: 238 RAEDRE-REPRKEKPRHER-RSSSRREEREEKNRERERGRSSDRHSSRHNGRSEGHSRRG 295
Query: 261 ESYLREDQDRRGGDKSSTGRGDS--SSHRH 288
S RE RR + S R S S RH
Sbjct: 296 RSRSRERSHRRKRARHSRDRDSSNPSDRRH 325
Score = 79 (32.9 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 26/85 (30%), Positives = 36/85 (42%)
Query: 208 RSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRED 267
RS D +PR++ R E + S R + E + R RE R ++ RH S E
Sbjct: 236 RSRAEDREREPRKEKPRHERRSSSRREEREE-KNRERE-RGRSSDRHSSRHNGRS---EG 290
Query: 268 QDRRGGDKSSTGRGDSSSHRH-RER 291
RRG +S RH R+R
Sbjct: 291 HSRRGRSRSRERSHRRKRARHSRDR 315
Score = 64 (27.6 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 195 EGNPNQSDRREEKRSIRHDH---REKPREDHGR-REDKRSRRHSDNN-----EFEARS-R 244
E + D+ + ++ +H PR + ++D S++HS N + E R R
Sbjct: 163 EKKRRKKDKENTDQEVQTEHPVSSSSPRNQMEKEKDDPGSKKHSTKNPERGQKSEPREVR 222
Query: 245 EDHYRRDE-KRPKRHESESYLREDQ-DRRGGDKSSTGRGDSSSHRHRER 291
+ H+ E K R +E RE + ++ ++ S+ R + ++RER
Sbjct: 223 KHHHSSPEVKTTCRSRAEDREREPRKEKPRHERRSSSRREEREEKNRER 271
Score = 55 (24.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 214 HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESES-----YLREDQ 268
H G +DK +++ + + + R ++D D++ H S + +++
Sbjct: 138 HTPSVSSSEGSEDDKPPKKYKKDKKEKKRRKKDKENTDQEVQTEHPVSSSSPRNQMEKEK 197
Query: 269 DRRGGDKSSTG---RGDSSSHR 287
D G K ST RG S R
Sbjct: 198 DDPGSKKHSTKNPERGQKSEPR 219
Score = 51 (23.0 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 161 QDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPRE 220
+ R + HE+ + + +R GR + + + ++ + R E S R R + RE
Sbjct: 245 EPRKEKPRHERRSSSRREEREEKNRERERGRSS-DRHSSRHNGRSEGHSRRG--RSRSRE 301
Query: 221 DHGRREDKRSRRHSDNNEFEARSREDH 247
RR KR+R D + R H
Sbjct: 302 RSHRR--KRARHSRDRDSSNPSDRRHH 326
Score = 44 (20.5 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 201 SDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHES 260
S+ R K S D K ++ G S S+ +E + ++ Y++D+K KR +
Sbjct: 112 SNYRAPKDSEEMDDVTKELQEKGCGAHTPSVSSSEGSEDDKPPKK--YKKDKKEKKRRKK 169
Query: 261 ESYLREDQD 269
+ DQ+
Sbjct: 170 DKE-NTDQE 177
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 360 (131.8 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 67/113 (59%), Positives = 87/113 (76%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +EA LGI + SWH+ YK+SA+V++GG P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREAQLGIKETVSWHSVYKNSAWVFIGGFPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
EI ++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHVA
Sbjct: 61 EIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVA 113
Score = 91 (37.1 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 45/173 (26%), Positives = 76/173 (43%)
Query: 131 RAFQR-GECTRG-DGCKFSHNEQ-RAANTGGGPQDRSSRWGHEKFEGFSW-GKNDSSSRA 186
R QR GE R DG + E+ R GG Q R E+ G G+ D
Sbjct: 271 RGRQRDGERQRERDGGRQRDGERDRERERDGGRQ-RDGERQRERDGGRQRDGERDRERER 329
Query: 187 TGSGRVALEGNPNQSDRRE--EKRSIRHDH-REKP--REDHGRREDKRSR---RHSDNNE 238
G GR +G+ ++ R+ +R + D RE+ R+ G R+ ++ R R D +
Sbjct: 330 DG-GRQR-DGDRDREQERDGGRQRDVERDRERERDGGRQRDGDRDQEQERDGGRQRDVEK 387
Query: 239 FEARSREDHYRRDEKRPKRHESESYLREDQDR-RGGDKSSTGRGDSSSHRHRE 290
+ R R+ +RD +R + E + + D++R R ++ D + +HR+
Sbjct: 388 VKERERDGGRQRDGERDRERERDGGRQRDEERVRQRERDRDRERDRGNGKHRD 440
Score = 88 (36.0 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 258
N+ DR +E+ ++ RE RE+ G++ D RRH++ + E R RE D++R +R
Sbjct: 219 NRRDRADEQEQLKEKERE--REE-GKKTD---RRHAETQQRE-RDREGEREGDKER-ERD 270
Query: 259 ESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
E Q R G + G D R RER
Sbjct: 271 RGRQRDGERQRERDGGRQRDGERD----RERER 299
Score = 86 (35.3 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 28/100 (28%), Positives = 44/100 (44%)
Query: 195 EGNPNQS-DRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEA-RSREDHYRRDE 252
EG+ + DR ++ R R+ R+ G R+ +R R + E R R+ +RD
Sbjct: 262 EGDKERERDRGRQRDGERQRERDGGRQRDGERDRERERDGGRQRDGERQRERDGGRQRDG 321
Query: 253 KRPKRHESESYLREDQDRRGGDKSSTGRG-DSSSHRHRER 291
+R + E + + D DR + GR D R RER
Sbjct: 322 ERDRERERDGGRQRDGDRDREQERDGGRQRDVERDRERER 361
Score = 85 (35.0 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
++DRR + R RE RE RE R R+ + R R+ +RD +R + E
Sbjct: 242 KTDRRHAETQQRERDREGEREGDKERERDRGRQRDGERQ---RERDGGRQRDGERDRERE 298
Query: 260 SESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ + D +R+ ++ + D R RER
Sbjct: 299 RDGGRQRDGERQR-ERDGGRQRDGERDRERER 329
Score = 77 (32.2 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 23/97 (23%), Positives = 39/97 (40%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSR-RHSDNNEFEARSREDHYRRDEK 253
E + DR E+ + R++ R+ G R+ +R R D R R+ +RD +
Sbjct: 249 ETQQRERDREGEREGDKERERDRGRQRDGERQRERDGGRQRDGERDRERERDGGRQRDGE 308
Query: 254 RPKRHESESYLREDQDR---RGGDKSSTGRGDSSSHR 287
R + + ++DR R G + G D R
Sbjct: 309 RQRERDGGRQRDGERDRERERDGGRQRDGDRDREQER 345
Score = 71 (30.1 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 25/114 (21%), Positives = 45/114 (39%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNE 238
+ D + G + +G + R+ +R R R++ D R +++ R D
Sbjct: 298 ERDGGRQRDGERQRERDGGRQRDGERDRERE-RDGGRQRDG-DRDREQERDGGRQRDVER 355
Query: 239 FEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRG-DSSSHRHRER 291
R R+ +RD R + E + + D ++ + GR D R RER
Sbjct: 356 DRERERDGGRQRDGDRDQEQERDGGRQRDVEKVKERERDGGRQRDGERDRERER 409
Score = 70 (29.7 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 40/147 (27%), Positives = 60/147 (40%)
Query: 134 QR-GECTRG-DGCKFSHNEQ-RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSG 190
QR GE R DG + E+ R GG Q R ++ +G + G
Sbjct: 304 QRDGERQRERDGGRQRDGERDRERERDGGRQRDGDRDREQERDGGRQRDVERDRERERDG 363
Query: 191 RVALEGNPNQSDRREEKRSIRHDHREKPRE-DHGRRED-KRSR---RHSDNNEFEARSRE 245
+G+ +Q R+ R R + K RE D GR+ D +R R R E R R+
Sbjct: 364 GRQRDGDRDQEQERDGGRQ-RDVEKVKERERDGGRQRDGERDRERERDGGRQRDEERVRQ 422
Query: 246 DHYRRDEKRPKRH-ESESYLREDQDRR 271
RD +R + + + + RE + RR
Sbjct: 423 RERDRDRERDRGNGKHRDHSREREHRR 449
Score = 65 (27.9 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
E + +++E+K++++ + RE R + R ++ ++ +E S + +R
Sbjct: 165 EKKKKKKEKKEKKKALKEEKREG-RSESSASSPIRVKKEKEDVAYEKYSVKGPAAN--RR 221
Query: 255 PKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ E E ++++R G K+ R + R R+R
Sbjct: 222 DRADEQEQLKEKEREREEGKKTDR-RHAETQQRERDR 257
Score = 51 (23.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 203 RREEKRSIRHDHREKPRE-DHGR---REDKRSRRHSDN 236
+R+E+R +R R++ RE D G R+ R R H N
Sbjct: 414 QRDEER-VRQRERDRDRERDRGNGKHRDHSREREHRRN 450
Score = 51 (23.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 16/79 (20%), Positives = 28/79 (35%)
Query: 216 EKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR--HESESYLREDQDRRGG 273
+KP++D ++ K+ + + RE P R E E E +G
Sbjct: 157 KKPKKDKKEKKKKKKEKKEKKKALKEEKREGRSESSASSPIRVKKEKEDVAYEKYSVKGP 216
Query: 274 DKSSTGRGDSSSH-RHRER 291
+ R D + +ER
Sbjct: 217 AANRRDRADEQEQLKEKER 235
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 351 (128.6 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 64/113 (56%), Positives = 87/113 (76%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+ + SWH +YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVPEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
EIV++NLV DK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 61 EIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
Score = 99 (39.9 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 27/103 (26%), Positives = 44/103 (42%)
Query: 191 RVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR 250
R+ G ++ K +H+H+ R + RED RH + + RS + H RR
Sbjct: 236 RMTCHGGTEDREKEPRKEKSKHEHKSSSRREE--RED----RHRERDR--GRSSDIHSRR 287
Query: 251 DEKRP--KRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++R + H S S R+ R + S R S+ HR +
Sbjct: 288 HDRRSEGRTHRSRSRSRDKSHRHKRSRHSRDRESSNPREHRHQ 330
Score = 99 (39.9 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 35/119 (29%), Positives = 52/119 (43%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPRED---HGRRED--KRSRRH 233
K+D S+ SG+ + + Q + E R +R H P HG ED K R+
Sbjct: 198 KDDPGSK-NHSGKHSEKAEKGQ---KSESREVRKSHPSSPEVRMTCHGGTEDREKEPRKE 253
Query: 234 SDNNEFEARSR-EDHYRRDEKRPKRHESESYLREDQDRR--GGDKSSTGRGDSSSHRHR 289
+E ++ SR E+ R +R + S+ + R DRR G S R SHRH+
Sbjct: 254 KSKHEHKSSSRREEREDRHRERDRGRSSDIHSRR-HDRRSEGRTHRSRSRSRDKSHRHK 311
Score = 58 (25.5 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 19/96 (19%), Positives = 36/96 (37%)
Query: 198 PNQSDRREE-KRSIRH----DHREKPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRD 251
P S+ +E R ++ H P G +DK +++H D E + + ++
Sbjct: 118 PEDSEEMDEVTRELQERGCGTHTPPPSSSEGSEDDKPTKKHKKDKKEKKKKKKDKEKTGQ 177
Query: 252 EKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHR 287
E + ++ S S R + D S S +
Sbjct: 178 EVQAEQPASSSLPRSKMIKEKDDPGSKNHSGKHSEK 213
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 327 (120.2 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 57/108 (52%), Positives = 82/108 (75%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ ++++Q +N +E + + +ASWHA Y+D+AY+Y+GG+PFDL+EGD++ +F+Q GE V
Sbjct: 1 MNNIRQVQALNKRELEHAVPPEASWHADYRDTAYIYIGGLPFDLSEGDIVTIFSQYGEPV 60
Query: 64 DVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105
+NLVRDK TGK RGFAF+ YEDQR+ NL GA +LGR +RVDH
Sbjct: 61 HINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNLGGATVLGRVLRVDH 108
Score = 99 (39.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 27/77 (35%), Positives = 35/77 (45%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSR-RHSDNNEFEARSREDHYRRDEK 253
E +S RR E R + H R D RSR R + ++ RSR D RD K
Sbjct: 200 EARKERSSRRRESSRERPSRHSRHHHRHRRHNDDRSRSRERSSRDYRERSRRDRSYRD-K 258
Query: 254 RPKRHESESYLREDQDR 270
P+R S + R D+DR
Sbjct: 259 SPERSRSPAP-RHDRDR 274
Score = 80 (33.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 200 QSDRREEKRSIRHDH-REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 258
+ + R+E+ S R + RE+P H R R RRH+D+ +RSRE R +R +R
Sbjct: 198 EKEARKERSSRRRESSRERPSR-HSRHHH-RHRRHNDDR---SRSRERSSRDYRERSRR- 251
Query: 259 ESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
SY + +R +S R D H R
Sbjct: 252 -DRSYRDKSPER---SRSPAPRHDRDRHDRR 278
Score = 72 (30.4 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 30/125 (24%), Positives = 47/125 (37%)
Query: 168 GHEKFEGFSWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIRHDHREKPRE--DHGR 224
G + G S G+ D R + LE N D K + + +E+ +
Sbjct: 143 GRRRKRGHS-GERDQPRRQLLKEEIELEELIRNHDDEDPMKEYLIEEKKEEVARALEKEA 201
Query: 225 REDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSS 284
R+++ SRR + E +R H+R +R S S R +D R + D S
Sbjct: 202 RKERSSRRRESSRERPSRHSRHHHRH--RRHNDDRSRSRERSSRDYRERSRRDRSYRDKS 259
Query: 285 SHRHR 289
R R
Sbjct: 260 PERSR 264
Score = 64 (27.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 33/142 (23%), Positives = 55/142 (38%)
Query: 155 NTGGGPQ-DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHD 213
N GG R R H +++ + D+++ A G A G D +E R +
Sbjct: 93 NLGGATVLGRVLRVDHTRYKKRDEDE-DTNNVAKLLGETA--GKEADGDTDDEGRRRKRG 149
Query: 214 H---REKPREDHGRRE---DKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRED 267
H R++PR + E ++ R H D + + E+ + E+ + E E+
Sbjct: 150 HSGERDQPRRQLLKEEIELEELIRNHDDEDPMKEYLIEE---KKEEVARALEKEARKERS 206
Query: 268 QDRRGGDKSSTGRGDSSSHRHR 289
RR + R HRHR
Sbjct: 207 SRRRESSRERPSRHSRHHHRHR 228
Score = 46 (21.3 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATG-SGRVALEGNPNQSDRREEKR 208
++R++ ++R SR H + ND SR+ S R E + + DR +
Sbjct: 203 KERSSRRRESSRERPSR--HSRHHHRHRRHNDDRSRSRERSSRDYRERS--RRDRSYRDK 258
Query: 209 SIRHDHREKPREDHGRREDKR 229
S PR D R + +R
Sbjct: 259 SPERSRSPAPRHDRDRHDRRR 279
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 100/305 (32%), Positives = 156/305 (51%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG++D SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAXXXXXXX 114
EIV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120
Query: 115 XXXXXXXXXXXXXGVCRAFQRGEC-TRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFE 173
V R Q C R S + + T +D+ + +K E
Sbjct: 121 SEEIDD--------VTRQLQEKGCGARTPSPSLSESSEDEKPTKKHKKDKKEKKKKKK-E 171
Query: 174 GFSWGKNDSSSRATGSG--RVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSR 231
+ + + + S R ++ + ++ ++ + +PRE G++ K
Sbjct: 172 KEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSEPRE--GQKLPKSRT 229
Query: 232 RHSDNNE-FEARSREDHYRRDEKRPKRHESESYLREDQDR-RGGDKSST---GRGDSSSH 286
+S E E +++ + + K R E+ +DR R D S+ GR + S+
Sbjct: 230 AYSGGAEDLERELKKEKPKHEHKSSSRREAREEKTRIRDRGRSSDAHSSWYNGRSEGRSY 289
Query: 287 RHRER 291
R R R
Sbjct: 290 RSRSR 294
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 282 (104.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 56/108 (51%), Positives = 75/108 (69%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ Q+K IQ +N KE + GIS +ASWH Y+D+A+VY GG+ L+EGD++ +F+Q GE V
Sbjct: 1 MNQIKAIQALNKKEIEQGISPEASWHVDYRDTAFVYFGGLDDTLSEGDIITIFSQYGEPV 60
Query: 64 DVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105
+ LVRDK TGK RGF ++ YEDQR+ NL GA I R +RVDH
Sbjct: 61 FLKLVRDKETGKSRGFGWLKYEDQRSTDLAVDNLGGAVIKDRMMRVDH 108
Score = 119 (46.9 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARS-REDHYRRDEKRPK-RHESE 261
RE+K+S R ++ R + SR+H + ++ EA S R+ RRDE R + R +
Sbjct: 191 REQKKSSRRKDKDGSRSSRHHHHHRTSRKHREESDDEAGSDRKRRKRRDESRSRERRRRD 250
Query: 262 SYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
Y +D+ R D S R DS R RER
Sbjct: 251 DYKDKDKHR---DSDSRRRDDSKDRRRRER 277
Score = 96 (38.9 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 36/131 (27%), Positives = 51/131 (38%)
Query: 163 RSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH 222
RSSR H S + S GS R + RR+E RS R R +D
Sbjct: 206 RSSR--HHHHHRTSRKHREESDDEAGSDR-------KRRKRRDESRS-RERRRRDDYKDK 255
Query: 223 GRREDKRSRRHSDNNEFEARSRED--HYRRDEKRPKRHESESYLREDQDRRGGDKSSTGR 280
+ D SRR D+ + R R+D H+R ++ + R D++R S R
Sbjct: 256 DKHRDSDSRRRDDSKDRRRRERDDDGHHRSKDRGRENSRDRDRDRHDRERHRRRHDSRER 315
Query: 281 GDSSSHRHRER 291
+ R R R
Sbjct: 316 HERRKERPRSR 326
Score = 80 (33.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRG 272
+ ++K E+ RE K+S R D + + SR H+ R ++ H ES D G
Sbjct: 179 EEKKKEVEEALTREQKKSSRRKDKDGSRS-SRHHHHHRTSRK---HREES-----DDEAG 229
Query: 273 GDKSSTGRGDSSSHRHRER 291
D+ R D S R R R
Sbjct: 230 SDRKRRKRRDESRSRERRR 248
Score = 63 (27.2 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 195 EGNPNQSDR-REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRED 246
+G+ DR RE R D + RE H RR D R R +RS D
Sbjct: 280 DGHHRSKDRGRENSRDRDRDRHD--RERHRRRHDSRERHERRKERPRSRSPRD 330
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 309 (113.8 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 56/107 (52%), Positives = 80/107 (74%)
Query: 6 QVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV 65
+++ +Q+IN KE +L IS+ ASWHA Y S Y+YVGG+ +DL EGD++A+F+Q GEI +
Sbjct: 3 RIREVQNINKKELNLNISESASWHADYSHSPYIYVGGLNYDLNEGDVIAIFSQYGEISEC 62
Query: 66 NLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106
NLVR+K TG+ +GF FV Y+ Q++ NLNG +LG+TI+VDHV
Sbjct: 63 NLVRNKETGRSQGFCFVGYDQQKSTVLAVDNLNGINLLGKTIKVDHV 109
Score = 86 (35.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 26/89 (29%), Positives = 39/89 (43%)
Query: 196 GNPNQSDRREEKRSIRHDHREKPRE---DHGRREDKRSRRHSDNNEFEAR----SREDHY 248
G+ N+S+ + E R +H+HR R+ D R + R D + R SRE Y
Sbjct: 247 GDQNKSNDKLENRD-KHNHRNTSRDRIKDRSRSRSRERDRERDRERYRDRDRNRSREREY 305
Query: 249 R-RDEKRPKRHESESYLREDQDRRGGDKS 276
R R R K + Y ++R D+S
Sbjct: 306 RDRSRSRSKSRDRYRYRDRSREREYRDRS 334
Score = 82 (33.9 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 28/106 (26%), Positives = 43/106 (40%)
Query: 163 RSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPRE-D 221
R+ R K ++ + R T R+ +R E+ R+ R++ R +
Sbjct: 243 RNDRGDQNKSNDKLENRDKHNHRNTSRDRIKDRSRSRSRERDRERDRERYRDRDRNRSRE 302
Query: 222 HGRREDKRSRRHS-DNNEFEARSREDHYR-RDEKRPKRHESESYLR 265
R+ RSR S D + RSRE YR R R + +S Y R
Sbjct: 303 REYRDRSRSRSKSRDRYRYRDRSREREYRDRSRDRERYRDSRDYRR 348
Score = 81 (33.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 209 SIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRED 267
SIR+D ++ + D DK + R++ + + RSR RD +R + +
Sbjct: 241 SIRNDRGDQNKSNDKLENRDKHNHRNTSRDRIKDRSRSRSRERDRERDRERYRDRDRNRS 300
Query: 268 QDRRGGDKSSTGRGDSSSHRHRER 291
++R D+S + +R+R+R
Sbjct: 301 REREYRDRSRSRSKSRDRYRYRDR 324
Score = 79 (32.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHYR-RDEKRPKRHESE 261
R RS D RE+ RE + R+ RSR + +RS+ D YR RD R + +
Sbjct: 275 RSRSRSRERD-RERDRERYRDRDRNRSREREYRDRSRSRSKSRDRYRYRDRSREREYRDR 333
Query: 262 SYLRE 266
S RE
Sbjct: 334 SRDRE 338
Score = 79 (32.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEF-EARSREDHYRRDEKRPKR 257
N +D E+K+ + EK + +RE+KR RR ++ E E R + ++DEK ++
Sbjct: 150 NNNDNDEKKKEKKKRKLEKKLKKKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRK 209
Query: 258 HESE 261
+ +
Sbjct: 210 QDKK 213
Score = 76 (31.8 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 26/114 (22%), Positives = 43/114 (37%)
Query: 180 NDSSSRATGSGRVALEGNPNQSDRREEKRSIRH----DHREKPREDHGRREDKRSRRHSD 235
ND+ + + LE + +REEKR R + REK + D ++D++ R D
Sbjct: 152 NDNDEKKKEKKKRKLEKKLKKKQKREEKRKRRENETPEQREKRKMDKQLKKDEKLLRKQD 211
Query: 236 NNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
+ + D S+ DR +KS+ + H HR
Sbjct: 212 KKRLKFENTTDTTTTTTTTTTTSPPSSFDSIRNDRGDQNKSNDKLENRDKHNHR 265
Score = 52 (23.4 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 246 DHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSS 284
DH + D KRPK++ +E D D + S G D+S
Sbjct: 107 DHVK-DYKRPKKN-NEDLTDTDDDDDDDNNSDDGTDDNS 143
Score = 52 (23.4 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQD 269
D + D G ++ S ++NN+ + + +E R+ EK+ K+ + R+ ++
Sbjct: 128 DDDDDNNSDDGTDDNSDSDDDNNNNDNDEKKKEKKKRKLEKKLKKKQKREEKRKRRE 184
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 67/113 (59%), Positives = 92/113 (81%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
++PLT+VK I +N++EA+LG+S+ SWHA+YKDSA+V++GG+P+ LTEGD++ VF+Q G
Sbjct: 1 LSPLTKVKLINELNAREAELGVSEAVSWHAEYKDSAWVFIGGLPYQLTEGDVICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
E+V++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHVA
Sbjct: 61 EVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVA 113
>UNIPROTKB|I3LK87 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
Uniprot:I3LK87
Length = 312
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 94/300 (31%), Positives = 152/300 (50%)
Query: 2 NPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQC-- 59
+PLT+VK I +N +E LG+++ SWH++YKDSA++++GG+P++LTEGD++ VF+Q
Sbjct: 2 SPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQINR 61
Query: 60 -GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAXXXXX 112
GEIV++NLVRDK TGK +GF F+ YEDQR+ N NG +I GRTIRVDHV+
Sbjct: 62 YGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAP 121
Query: 113 XXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKF 172
V + Q RG G +H ++++ + + +K
Sbjct: 122 KDSEETDD--------VTKELQE----RGCG---AHTPSQSSSESSEDDKPTKKHKKDKK 166
Query: 173 EGFSWGKN-DSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSR 231
E K+ + + + + + A +P +E+ H K E G++ + R +
Sbjct: 167 EKKKRKKDKEKTDQEVLAEQPASSSSPRSKMTKEKDDPGSKKHSGKNSE-RGQKSESREK 225
Query: 232 R--HSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
H + + R++ + + K + E D+DR G + GR + SHR R
Sbjct: 226 TICHDGAEDRDWEPRKEKLKHEHKSSSKREEREEKNRDRDRGRGRHN--GRSEGHSHRSR 283
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 307 (113.1 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDA--SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQ 58
MNP+T +K +N +E LG + D SWH YKDSA++Y+GG+ + L+EGD++AVF+Q
Sbjct: 1 MNPITNIKNQNRMNERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQ 60
Query: 59 CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106
GE++++NL+RDK TGK +GFAF+ Y+DQR+ N NG + R IRVDHV
Sbjct: 61 YGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDHV 114
Score = 47 (21.6 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 203 RREEKRSIRHDHREKPREDHGRREDKRSRRHSDNN 237
++++K++ + REK R R+ +K++ R D +
Sbjct: 179 KKDKKKAKKEKKREKKRAKKIRKLEKKAARDPDGD 213
Score = 39 (18.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 195 EGNPNQSDRREEKRSIRHD-HREKPREDHGRREDKRSRRHSDNNEFEARSRED 246
+G+ N + +K D + E D G++++ +H+ +FE D
Sbjct: 211 DGDWNNKAKLIDKVVAEDDLYGENKHFDFGKKKEVEEVKHNPRPDFEKADWRD 263
Score = 38 (18.4 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 225 REDKRSRRHSDNNEFEARSREDHY 248
RE +++ + + EA EDHY
Sbjct: 271 REREKAEKAARGETSEAWGPEDHY 294
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 285 (105.4 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 54/110 (49%), Positives = 76/110 (69%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ +++I+ +N +E D S +SWH Y DSAY+Y+G + FDL E D+L VF++ GE V
Sbjct: 1 MNSIRQIERLNEQELDKPFS--SSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPV 58
Query: 64 DVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
D+NLVRDK TGK +GFAF+ YEDQR+ N+ ++L R +RVDHVA
Sbjct: 59 DINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVA 108
Score = 60 (26.2 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 218 PREDHGRREDKRSRRH--SDNNEFEARSREDHYRRDEKRPKRH 258
P D+ RE +R +H SD ++ +R + R R +RH
Sbjct: 170 PMRDYIHREKRRKLKHESSDRSDKSDSNRHSRHHRRHSRSRRH 212
Score = 59 (25.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHS 234
RE++R ++H+ ++ + R + RRHS
Sbjct: 177 REKRRKLKHESSDRSDKSDSNRHSRHHRRHS 207
Score = 53 (23.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 246 DHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
D+ R+++R +HES R D+ S R S S RHR+
Sbjct: 173 DYIHREKRRKLKHESSD--RSDKSD-SNRHSRHHRRHSRSRRHRD 214
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 256 (95.2 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 49/113 (43%), Positives = 78/113 (69%)
Query: 1 MNPLTQVKRIQHINSKEA-DLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQC 59
M +++ I+ +N E ++G ++D+SWH +Y+DS+Y+Y+G + LTEGD++ VF+Q
Sbjct: 1 MGLFDKIRNIEKLNEAELKNIG-NNDSSWHDQYRDSSYIYIGNLDNRLTEGDIVIVFSQY 59
Query: 60 GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106
GE +DVNLVRD TGK +G+ F++Y DQR+ N NG ++L R + VDH+
Sbjct: 60 GEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVDHI 112
Score = 82 (33.9 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 24/99 (24%), Positives = 49/99 (49%)
Query: 197 NPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDH----YRRDE 252
N +S +++ I HD EK R + G +E++ D+++ E +D Y+R +
Sbjct: 181 NFEKSIKKDIISPIGHD--EKSRHNEGMKEEEEDEDDEDDDD-EDDDDDDSVDIKYKRHK 237
Query: 253 KRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++ K ++ Y ++++ +R D R + RHRE+
Sbjct: 238 EKRKSLTTKKYDKKEKHKRKSDHRDKHRRRENHSRHREK 276
Score = 81 (33.6 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 195 EGNPNQSDRREEKRSIRHD-HREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYR-- 249
E + ++ D ++ I++ H+EK + ++ DK+ + R SD+ + + R RE+H R
Sbjct: 216 EDDDDEDDDDDDSVDIKYKRHKEKRKSLTTKKYDKKEKHKRKSDHRD-KHRRRENHSRHR 274
Query: 250 ---RDEKRPKRHESESYLR-EDQDRRGGDKSSTGR 280
+D+K KR SY + + R SST R
Sbjct: 275 EKEKDKKSHKRRHKHSYDKYSSRSRSYSTSSSTDR 309
Score = 58 (25.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
EG + + +++ D + D + K R+ +++ +E H R+ + R
Sbjct: 204 EGMKEEEEDEDDEDDDDEDDDDDDSVDIKYKRHKEKRKSLTTKKYD--KKEKHKRKSDHR 261
Query: 255 PKRHESESYLREDQDRRGGDKSSTGRGDSSSHRH 288
K E++ R + + DK S R H+H
Sbjct: 262 DKHRRRENHSRHREKEK--DKKSHKR----RHKH 289
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 256 (95.2 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 49/113 (43%), Positives = 78/113 (69%)
Query: 1 MNPLTQVKRIQHINSKEA-DLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQC 59
M +++ I+ +N E ++G ++D+SWH +Y+DS+Y+Y+G + LTEGD++ VF+Q
Sbjct: 1 MGLFDKIRNIEKLNEAELKNIG-NNDSSWHDQYRDSSYIYIGNLDNRLTEGDIVIVFSQY 59
Query: 60 GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106
GE +DVNLVRD TGK +G+ F++Y DQR+ N NG ++L R + VDH+
Sbjct: 60 GEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVDHI 112
Score = 82 (33.9 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 24/99 (24%), Positives = 49/99 (49%)
Query: 197 NPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDH----YRRDE 252
N +S +++ I HD EK R + G +E++ D+++ E +D Y+R +
Sbjct: 181 NFEKSIKKDIISPIGHD--EKSRHNEGMKEEEEDEDDEDDDD-EDDDDDDSVDIKYKRHK 237
Query: 253 KRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++ K ++ Y ++++ +R D R + RHRE+
Sbjct: 238 EKRKSLTTKKYDKKEKHKRKSDHRDKHRRRENHSRHREK 276
Score = 81 (33.6 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 195 EGNPNQSDRREEKRSIRHD-HREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYR-- 249
E + ++ D ++ I++ H+EK + ++ DK+ + R SD+ + + R RE+H R
Sbjct: 216 EDDDDEDDDDDDSVDIKYKRHKEKRKSLTTKKYDKKEKHKRKSDHRD-KHRRRENHSRHR 274
Query: 250 ---RDEKRPKRHESESYLR-EDQDRRGGDKSSTGR 280
+D+K KR SY + + R SST R
Sbjct: 275 EKEKDKKSHKRRHKHSYDKYSSRSRSYSTSSSTDR 309
Score = 58 (25.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
EG + + +++ D + D + K R+ +++ +E H R+ + R
Sbjct: 204 EGMKEEEEDEDDEDDDDEDDDDDDSVDIKYKRHKEKRKSLTTKKYD--KKEKHKRKSDHR 261
Query: 255 PKRHESESYLREDQDRRGGDKSSTGRGDSSSHRH 288
K E++ R + + DK S R H+H
Sbjct: 262 DKHRRRENHSRHREKEK--DKKSHKR----RHKH 289
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 60/113 (53%), Positives = 79/113 (69%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT +K + ++ E G SWH YKDSA+++V G P+ LTEGDL+ VF+Q G
Sbjct: 1 MNPLTNMKNVLKLSEHELQHG--GKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYG 58
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107
E+V++NL+RD TGK +GF F+ YEDQR+ NLNG +IL RT+RVDHVA
Sbjct: 59 EVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVA 111
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 53/106 (50%), Positives = 74/106 (69%)
Query: 7 VKRIQHINSKEADLGI-SDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV 65
+ +IQ IN KE GI S SWH +YKD+AY+Y+G + +LTEGD+L VF++ G VDV
Sbjct: 1 MNKIQQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDV 60
Query: 66 NLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105
L RD+ TG+ +GFA++ YEDQR+ NLNG +I GR +++DH
Sbjct: 61 ILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDH 106
>CGD|CAL0001156 [details] [associations]
symbol:orf19.1045 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0070274 "RES complex" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0000349 "generation of
catalytic spliceosome for first transesterification step"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0001156
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000121 EMBL:AACQ01000120 KO:K13107 RefSeq:XP_713650.1
RefSeq:XP_713695.1 ProteinModelPortal:Q59VP9 STRING:Q59VP9
GeneID:3644670 GeneID:3644701 KEGG:cal:CaO19.1045
KEGG:cal:CaO19.8647 eggNOG:NOG308885 Uniprot:Q59VP9
Length = 353
Score = 205 (77.2 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 41/109 (37%), Positives = 67/109 (61%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ +K+I IN KE + S +SWH Y+D+ Y+Y+G IP++LT DL+ +F+Q G
Sbjct: 94 MNTIKQINQINQKELNSQTSYKSSWHYDYRDTNYLYIGNIPYNLTTKDLIIIFSQYGIPT 153
Query: 64 DVNLVRDKGTGKP-RGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105
+NL++DK + K RGF F+ Y + ++ N NG ++ R ++VDH
Sbjct: 154 HINLIKDKESSKHHRGFGFLKYANFKSCILAIDNFNGIKLGDRYLKVDH 202
Score = 64 (27.6 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 26/114 (22%), Positives = 47/114 (41%)
Query: 179 KNDSSSRATGSGRVALEGNPN----QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHS 234
K R GR+ +EGN + ++E+ + + D +D ++ +
Sbjct: 233 KEKKEKRVDNDGRL-IEGNKEIKEIEGGEKKEEEEEEDNEEDNDNNDDDEFKDPMAQYLT 291
Query: 235 DNNEFEARSREDHYRRDE-KRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHR 287
N+ E R+D DE K P E ++++ + + G +SS SSHR
Sbjct: 292 KTNDKE---RDDDDDDDEFKDPM----EQFIKDKKKKSGKHRSSHRSSHRSSHR 338
Score = 63 (27.2 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ D E+ I ++ ++ E+ ++E K R +D E EK+ + E
Sbjct: 208 RGDENEDDYLIDYEEIKREMEEKEKKEKKEKRVDNDGRLIEGNKEIKEIEGGEKKEEEEE 267
Query: 260 SESYLREDQDRRGGDK 275
++ ED D D+
Sbjct: 268 EDN--EEDNDNNDDDE 281
Score = 50 (22.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARS--REDHYR-RD-EKRPKR 257
D + P E + + K+S +H ++ RS R H++ +D EK P R
Sbjct: 305 DEFKDPMEQFIKDKKKKSGKHRSSHRSSHRSSHRSSHHKSKDREKSPTR 353
Score = 45 (20.9 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 15/85 (17%), Positives = 33/85 (38%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK-RH 258
+ D E+ + D + P + + + + R D+++ E + + + +D+K+ +H
Sbjct: 267 EEDNEEDNDNNDDDEFKDPMAQYLTKTNDKERDDDDDDD-EFKDPMEQFIKDKKKKSGKH 325
Query: 259 ESESYLREDQDRRGGDKSSTGRGDS 283
S R S R S
Sbjct: 326 RSSHRSSHRSSHRSSHHKSKDREKS 350
>UNIPROTKB|Q59VP9 [details] [associations]
symbol:IST3 "Putative uncharacterized protein IST3"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0001156 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000121 EMBL:AACQ01000120 KO:K13107
RefSeq:XP_713650.1 RefSeq:XP_713695.1 ProteinModelPortal:Q59VP9
STRING:Q59VP9 GeneID:3644670 GeneID:3644701 KEGG:cal:CaO19.1045
KEGG:cal:CaO19.8647 eggNOG:NOG308885 Uniprot:Q59VP9
Length = 353
Score = 205 (77.2 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 41/109 (37%), Positives = 67/109 (61%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ +K+I IN KE + S +SWH Y+D+ Y+Y+G IP++LT DL+ +F+Q G
Sbjct: 94 MNTIKQINQINQKELNSQTSYKSSWHYDYRDTNYLYIGNIPYNLTTKDLIIIFSQYGIPT 153
Query: 64 DVNLVRDKGTGKP-RGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105
+NL++DK + K RGF F+ Y + ++ N NG ++ R ++VDH
Sbjct: 154 HINLIKDKESSKHHRGFGFLKYANFKSCILAIDNFNGIKLGDRYLKVDH 202
Score = 64 (27.6 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 26/114 (22%), Positives = 47/114 (41%)
Query: 179 KNDSSSRATGSGRVALEGNPN----QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHS 234
K R GR+ +EGN + ++E+ + + D +D ++ +
Sbjct: 233 KEKKEKRVDNDGRL-IEGNKEIKEIEGGEKKEEEEEEDNEEDNDNNDDDEFKDPMAQYLT 291
Query: 235 DNNEFEARSREDHYRRDE-KRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHR 287
N+ E R+D DE K P E ++++ + + G +SS SSHR
Sbjct: 292 KTNDKE---RDDDDDDDEFKDPM----EQFIKDKKKKSGKHRSSHRSSHRSSHR 338
Score = 63 (27.2 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ D E+ I ++ ++ E+ ++E K R +D E EK+ + E
Sbjct: 208 RGDENEDDYLIDYEEIKREMEEKEKKEKKEKRVDNDGRLIEGNKEIKEIEGGEKKEEEEE 267
Query: 260 SESYLREDQDRRGGDK 275
++ ED D D+
Sbjct: 268 EDN--EEDNDNNDDDE 281
Score = 50 (22.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARS--REDHYR-RD-EKRPKR 257
D + P E + + K+S +H ++ RS R H++ +D EK P R
Sbjct: 305 DEFKDPMEQFIKDKKKKSGKHRSSHRSSHRSSHRSSHHKSKDREKSPTR 353
Score = 45 (20.9 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 15/85 (17%), Positives = 33/85 (38%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK-RH 258
+ D E+ + D + P + + + + R D+++ E + + + +D+K+ +H
Sbjct: 267 EEDNEEDNDNNDDDEFKDPMAQYLTKTNDKERDDDDDDD-EFKDPMEQFIKDKKKKSGKH 325
Query: 259 ESESYLREDQDRRGGDKSSTGRGDS 283
S R S R S
Sbjct: 326 RSSHRSSHRSSHRSSHHKSKDREKS 350
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 156 (60.0 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 41 GGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGA 94
G IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NLNG
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 95 QILGRTIRVDHVA 107
+ GR +RVD+ A
Sbjct: 62 EFSGRALRVDNAA 74
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 113 (44.8 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 109 (43.4 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 35/106 (33%), Positives = 47/106 (44%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHSDN 236
G++D+S G L DR E+R R R+K RE R D+R R S +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRE-RSRERDKERERRRSRSRDRRRRSRSRD 270
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGD 282
E RSRE +D R KR S S R ++R ++ G GD
Sbjct: 271 KEERRRSRERSKDKDRDR-KRRSSRSRERARRERERKEELRGGGGD 315
Score = 87 (35.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 198 PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR 257
P+ R+ R + RE+ RE RE +RSR S + +RSR+ ++E+R R
Sbjct: 225 PSPLPHRDRDRDRERERRERSRERDKERERRRSR--SRDRRRRSRSRD----KEERRRSR 278
Query: 258 HESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S+ +D+DR+ +SS R + R RER
Sbjct: 279 ERSKD---KDRDRKR--RSSRSR--ERARRERER 305
Score = 82 (33.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/74 (35%), Positives = 33/74 (44%)
Query: 220 EDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG---DKS 276
E+ GR D R RR S +E E R D R ++ KR E S D+ R GG D
Sbjct: 344 EEKGRDRD-RERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNG 402
Query: 277 STGRGDSSSHRHRE 290
G G+ S + E
Sbjct: 403 LEGLGNDSRDMYME 416
Score = 72 (30.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEAR 242
+G +RR RS R R++ R+ RE KR R S+ EAR
Sbjct: 346 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEAR 393
Score = 70 (29.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 36/143 (25%), Positives = 54/143 (37%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS 209
E+R + + + SR E+ K+ R S R + E + +R+EE R
Sbjct: 253 ERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR-SRERARRERERKEELRG 311
Query: 210 IRHDHREKPREDHGRRED-KRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
D E +D D + D RD +R + H SE R D+
Sbjct: 312 GGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRD---RDRERRRSHRSERERRRDR 368
Query: 269 DR-RGGDKSSTGRGDSSSHRHRE 290
DR R D+ RG+ S R R+
Sbjct: 369 DRDRDRDREHK-RGERGSERGRD 390
Score = 63 (27.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 22/84 (26%), Positives = 33/84 (39%)
Query: 209 SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
+IRH R+ + R H D + R R + R +K +R S S R +
Sbjct: 207 NIRHSGRDDTSR-YDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRR 265
Query: 269 DRRGGDKSSTGRG-DSSSHRHRER 291
R DK R + S + R+R
Sbjct: 266 SR-SRDKEERRRSRERSKDKDRDR 288
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 168 (64.2 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 82 NGREFSGRALRVDNAA 97
Score = 42 (19.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 255 PKRHESESYLREDQDRRGG 273
P H + + R+ D RGG
Sbjct: 288 PPLHHASGHARDSHDLRGG 306
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 113 (44.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 105 (42.0 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 34/105 (32%), Positives = 47/105 (44%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHSDN 236
G++D+S G L DR E+R R R+K RE R D+R R S +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRE-RSRERDKERERRRSRSRDRRRRSRSRD 270
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRG 281
E RSRE +D +R KR S S R ++R ++ G G
Sbjct: 271 KEERRRSRERSKDKDRER-KRRSSRSRERARRERERKEELRGGGG 314
Score = 88 (36.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 214 HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR-EDQDRRG 272
HR++ R+ R ++ R + +RSR D RR R K S R +D+DR
Sbjct: 230 HRDRDRDRERERRERSRERDKERERRRSRSR-DRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 273 GDKSSTGRGDSSSHRHRER 291
+SS R + R RER
Sbjct: 289 KRRSSRSR--ERARRERER 305
Score = 66 (28.3 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 209 SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
+IRH R+ + R H D + R R + R +K +R S S R +
Sbjct: 207 NIRHSGRDDTSR-YDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRR 265
Query: 269 DRRGGDKSSTGRG-DSSSHRHRER 291
R DK R + S + RER
Sbjct: 266 SR-SRDKEERRRSRERSKDKDRER 288
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 153 (58.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 51/169 (30%), Positives = 71/169 (42%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D +++GG+ +D TE L F++ G I V+++RD+ T + RGF FV +E D
Sbjct: 21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG Q+ GR IRVD G R F RG RG G
Sbjct: 81 MAAMNGKQVDGRMIRVDEAGKSGGRSGGFRGGSR------GGGRGFFRGSRGRGGGGYGG 134
Query: 148 HNEQRAANTGGGPQ----DRSSRWGHEKFEGF--SWGKNDSSSRATGSG 190
+ + GG + DRS G + G S+G D S G G
Sbjct: 135 DRSYGSDRSFGGDRSYGGDRSYGGGDRGYGGGERSYGGGDRSYGGGGGG 183
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 272 GGDKSSTGRGDSSSHR 287
GGD+S G G S+R
Sbjct: 172 GGDRSYGGGGGGYSNR 187
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 113 (44.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 106 (42.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 35/110 (31%), Positives = 48/110 (43%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHSDN 236
G++D+S G L DR E+R R R+K RE R D+R R S +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRE-RSRERDKERERRRSRSRDRRRRSRSRD 270
Query: 237 NEFEARSREDHYRRDEKRPKRHE-SESYLREDQDR----RGGDKSSTGRG 281
E RSRE +D +R +R S R +++R RGG G G
Sbjct: 271 KEERRRSRERSKDKDRERKRRSSRSRERARRERERKEELRGGGGGGGGGG 320
Score = 88 (36.0 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 214 HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR-EDQDRRG 272
HR++ R+ R ++ R + +RSR D RR R K S R +D+DR
Sbjct: 230 HRDRDRDRERERRERSRERDKERERRRSRSR-DRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 273 GDKSSTGRGDSSSHRHRER 291
+SS R + R RER
Sbjct: 289 KRRSSRSR--ERARRERER 305
Score = 74 (31.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 30/84 (35%), Positives = 36/84 (42%)
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYR-RDEKRPKRHESESYLREDQDRR 271
D E P E+ GR D R RR S +E E R D R RD KR +R D+ R
Sbjct: 353 DGPEGP-EEKGRDRD-RERRRSHRSERERRRDRDRDRERDHKRGERGGERG---RDEARG 407
Query: 272 GG-----DKSSTGRGDSSSHRHRE 290
GG D G G+ S + E
Sbjct: 408 GGGGGGQDNGLEGLGNDSRDMYME 431
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 209 SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
+IRH R+ + R H D + R R + R +K +R S S R +
Sbjct: 207 NIRHSGRDDTSR-YDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRR 265
Query: 269 DRRGGDKSSTGRG-DSSSHRHRER 291
R DK R + S + RER
Sbjct: 266 SR-SRDKEERRRSRERSKDKDRER 288
Score = 59 (25.8 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 202 DRREEKRSIRHDHREKPRE-DHGRRED-KRSRRHSDNNEFEAR 242
DR E+R RE+ R+ D R D KR R + EAR
Sbjct: 364 DRDRERRRSHRSERERRRDRDRDRERDHKRGERGGERGRDEAR 406
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 113 (44.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 105 (42.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 34/105 (32%), Positives = 47/105 (44%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHSDN 236
G++D+S G L DR E+R R R+K RE R D+R R S +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRE-RSRERDKERERRRSRSRDRRRRSRSRD 270
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRG 281
E RSRE +D +R KR S S R ++R ++ G G
Sbjct: 271 KEERRRSRERSKDKDRER-KRRSSRSRERARRERERKEELRGGGG 314
Score = 88 (36.0 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 214 HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR-EDQDRRG 272
HR++ R+ R ++ R + +RSR D RR R K S R +D+DR
Sbjct: 230 HRDRDRDRERERRERSRERDKERERRRSRSR-DRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 273 GDKSSTGRGDSSSHRHRER 291
+SS R + R RER
Sbjct: 289 KRRSSRSR--ERARRERER 305
Score = 66 (28.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 209 SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
+IRH R+ + R H D + R R + R +K +R S S R +
Sbjct: 207 NIRHSGRDDTSR-YDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRR 265
Query: 269 DRRGGDKSSTGRG-DSSSHRHRER 291
R DK R + S + RER
Sbjct: 266 SR-SRDKEERRRSRERSKDKDRER 288
Score = 65 (27.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 28/115 (24%), Positives = 42/115 (36%)
Query: 145 KFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQ---- 200
K E++ ++ + R R E+ G G D + + +G P +
Sbjct: 282 KDKDRERKRRSSRSRERARRERERKEELRGGGGGGGDMAEPSEAGDAPPDDGPPGELGPD 341
Query: 201 -SDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
D EEK R RE+ R RE +R R + E + R RDE R
Sbjct: 342 GPDGPEEKG--RDRDRERRRSHRSERERRRDRDRDRDREHKRGERGGERGRDEAR 394
Score = 58 (25.5 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
RD +R + H SE R D+DR D+ RG+ R R+
Sbjct: 353 RDRERRRSHRSERERRRDRDR-DRDREHK-RGERGGERGRD 391
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 113 (44.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY------EDQ 87
+ +++GG+ F+ E L F+ G I +V +V+D+ T + RGF F+ + D
Sbjct: 4 EEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDA 63
Query: 88 RNNLNGAQILGRTIRVDH 105
+NG + GR IRVDH
Sbjct: 64 MRPMNGKSLDGRQIRVDH 81
Score = 58 (25.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 131 RAFQRGECTRGD-GCKF-SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS 182
R G+ RG GC F +H R+ + GGG Q S + G+ +G S
Sbjct: 78 RVDHAGKLARGTRGCAFRAHGRGRSYSRGGGDQGYGSGRYDSQPGGYGYGSGRS 131
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 151 (58.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 54/175 (30%), Positives = 76/175 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRGD 142
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 143 GCKFSHNEQRAANTGGGPQDRSSR---WGH-EKFEGFSWGKN-DSSSRATGSGRV 192
G S E R+ GG SSR G+ ++ G S+ + DS ++ G V
Sbjct: 124 GG--SRFESRSGGYGGSRDYYSSRSQGGGYGDRSSGGSYRDSYDSYGKSRSKGTV 176
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 168 (64.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
Score = 42 (19.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 255 PKRHESESYLREDQDRRGG 273
P H + + R+ D RGG
Sbjct: 286 PPLHHASGHARDSHDLRGG 304
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 113 (44.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 103 (41.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 34/105 (32%), Positives = 46/105 (43%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHSDN 236
G++D+S G L DR E+R R R+K RE R D+R R S +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRE-RSRERDKERERRRSRSRDRRRRSRSRD 270
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRG 281
E RSRE +D R KR S S R ++R ++ G G
Sbjct: 271 KEERRRSRERSKDKDRDR-KRRSSRSRERARRERERKEELRGGGG 314
Score = 87 (35.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 198 PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR 257
P+ R+ R + RE+ RE RE +RSR S + +RSR+ ++E+R R
Sbjct: 225 PSPLPHRDRDRDRERERRERSRERDKERERRRSR--SRDRRRRSRSRD----KEERRRSR 278
Query: 258 HESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S+ +D+DR+ +SS R + R RER
Sbjct: 279 ERSKD---KDRDRKR--RSSRSR--ERARRERER 305
Score = 65 (27.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 25/76 (32%), Positives = 32/76 (42%)
Query: 220 EDHGRREDKRSRRHSDNNEFEARSREDHYR-RDEKRPKRHESESYLREDQDRRGG----D 274
E+ GR D R RR S +E E R D R R+ KR +R D+ R GG D
Sbjct: 347 EEKGRDRD-RDRRRSHRSERERRRDRDRDRDREHKRGERGGDRG---RDEARGGGGGGQD 402
Query: 275 KSSTGRGDSSSHRHRE 290
G G+ + E
Sbjct: 403 NGLEGLGNDGRDMYME 418
Score = 63 (27.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 22/84 (26%), Positives = 33/84 (39%)
Query: 209 SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
+IRH R+ + R H D + R R + R +K +R S S R +
Sbjct: 207 NIRHSGRDDTSR-YDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRR 265
Query: 269 DRRGGDKSSTGRG-DSSSHRHRER 291
R DK R + S + R+R
Sbjct: 266 SR-SRDKEERRRSRERSKDKDRDR 288
Score = 58 (25.5 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
E P+ D EEK R R++ R RE +R R + E + R RDE R
Sbjct: 337 ELGPDGPDGPEEKG--RDRDRDRRRSHRSERERRRDRDRDRDREHKRGERGGDRGRDEAR 394
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 150 (57.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 56/167 (33%), Positives = 73/167 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG------RGFFRGGRGRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS----SSRATGSG 190
GGG DR +G +FE S G S SSR+ G G
Sbjct: 116 R--------GGG--DRG--YGGSRFESRSGGYGGSRDYYSSRSQGGG 150
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 149 (57.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 51/160 (31%), Positives = 68/160 (42%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRGD 142
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSSGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 143 GCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS 182
G S E R+ GG SSR +G S+G S
Sbjct: 124 GG--SRFESRSGGYGGSRDYYSSR-----SQGGSYGDRSS 156
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 149 (57.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 47/158 (29%), Positives = 68/158 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ F+ TE L VF++ G++ +V +V+D+ + + RGF FV +E D
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGG------RGFFRGGRGRGGGGDRG 117
Query: 148 HN-EQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSS 184
+ R N GG Q SR + + G S+G S
Sbjct: 118 YGGSSRFENRSGGYQSSGSRDYYGRSHG-SYGDRSGGS 154
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 148 (57.2 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 55/187 (29%), Positives = 79/187 (42%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRG- 141
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSR---WGH-EKFEGFSWGKN-DSSSRATGSGRVALEG 196
G +F E R+ GG SSR G+ ++ G S+ + DS + + G
Sbjct: 124 GGNRF---ESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYEAGQRAEARGIPG 180
Query: 197 NPNQSDR 203
P + R
Sbjct: 181 RPQTASR 187
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 148 (57.2 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QR--NNL 91
VYVG PF TE DL F+Q G + +V +V D+ TG+PRGFAFV + + QR +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 92 NGAQILGRTIRVD 104
NG GR +RV+
Sbjct: 66 NGVDFNGRALRVN 78
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 148 (57.2 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QR--NNL 91
VYVG PF TE DL F+Q G + +V +V D+ TG+PRGFAFV + + QR +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 92 NGAQILGRTIRVD 104
NG GR +RV+
Sbjct: 66 NGVDFNGRALRVN 78
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 113 (44.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 101 (40.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 32/110 (29%), Positives = 47/110 (42%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHSDN 236
G++D+S G L DR E+R R R+K RE R D+R R S +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRE-RSRERDKERERRRSRSRDRRRRSRSRD 270
Query: 237 NEFEARSREDHYRRDEKRPKRHE-SESYLREDQDRRGGDKSSTGRGDSSS 285
+ RSRE +D R +R S R +++R+ + G G S
Sbjct: 271 KDERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGGGS 320
Score = 91 (37.1 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 198 PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR 257
P+ R+ R + RE+ RE RE +RSR S + +RSR+ +DE+R R
Sbjct: 225 PSPLPHRDRDRDRERERRERSRERDKERERRRSR--SRDRRRRSRSRD----KDERRRSR 278
Query: 258 HESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S+ +D+DR+ +SS R + R RER
Sbjct: 279 ERSKD---KDRDRKR--RSSRSR--ERARRERER 305
Score = 76 (31.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 31/107 (28%), Positives = 44/107 (41%)
Query: 188 GSGRVALEGNPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSRED 246
G+ R + N S R + R +D R P H R+ R R + + R +E
Sbjct: 198 GTRRGGADVNIRHSGRDDTSR---YDERPGPSPLPHRDRDRDRERERRERSR--ERDKER 252
Query: 247 HYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSS--SHRHRER 291
RR R +R S S +D+ RR ++S D S R RER
Sbjct: 253 ERRRSRSRDRRRRSRSR-DKDERRRSRERSKDKDRDRKRRSSRSRER 298
Score = 71 (30.1 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 30/99 (30%), Positives = 39/99 (39%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEG--NPNQS--DRRE 205
E+ GGG G + E G D + G + EG P + DR
Sbjct: 307 EELRGGGGGGGGGSGGGGGGDMAEPSEAG--DGAPDDGPPGELGPEGPDGPEEKGRDRDR 364
Query: 206 EKRSIRHDHREKPRE-DHGR-REDKRSRRHSDNNEFEAR 242
E+R RE+ R+ D R RE KR R S+ EAR
Sbjct: 365 ERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEAR 403
Score = 68 (29.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 25/75 (33%), Positives = 31/75 (41%)
Query: 220 EDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG----DK 275
E+ GR D R RR S +E E R D R ++ KR E S D+ R GG D
Sbjct: 356 EEKGRDRD-RERRRSHRSERERRRDRDRDR--DREHKRGERGSERGRDEARGGGGSGQDN 412
Query: 276 SSTGRGDSSSHRHRE 290
G G + E
Sbjct: 413 GLEGLGSDGRDMYME 427
Score = 62 (26.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/60 (33%), Positives = 24/60 (40%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
E P D EEK R RE+ R RE +R R + E + R RDE R
Sbjct: 346 ELGPEGPDGPEEKG--RDRDRERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEAR 403
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 114 (45.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + +D TE L F G I +++V +K +GKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 100 (40.3 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 32/95 (33%), Positives = 43/95 (45%)
Query: 202 DRREEKRSIRHDHREKPREDHGRREDKRSR-----RHSDNNEFEARSREDHYRRDEKRPK 256
D R+ R D RE+ RE RE +RSR R S + E E R R RD+ + K
Sbjct: 220 DERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERSRDKDKDK 279
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ + +D+DR D+ R S R RER
Sbjct: 280 DKDKDKEKDKDKDR---DRKRRSR---SRERKRER 308
Score = 93 (37.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 29/126 (23%), Positives = 52/126 (41%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
S + +R + + R E E ++D+ + G + L+ P + +R +
Sbjct: 299 SRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGDLGIDGIELKQEPEEKNRDRD 358
Query: 207 KRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRE 266
+ R R+K R+ R D+R R H D + R R+ RRD R + + +
Sbjct: 359 RERDREKDRDKDRD---RDRDRR-RSHRDRERDKDRERDRDRRRDRDRDRDRDRDHKRER 414
Query: 267 DQDRRG 272
D+ RG
Sbjct: 415 DRGDRG 420
Score = 86 (35.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 33/118 (27%), Positives = 48/118 (40%)
Query: 160 PQDRSSRWGHEKFEGFSWGKN-DSSSRATGSGRVALEGNPNQSDR-REEKRSIRHDHREK 217
PQD ++ G +G + + +R R + DR R+ +RS R R+K
Sbjct: 330 PQD-DAQTGDLGIDGIELKQEPEEKNRDRDRERDREKDRDKDRDRDRDRRRSHRDRERDK 388
Query: 218 PRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGD 274
RE D RR D+ R D + R R D R EKR +R + E + D
Sbjct: 389 DRERDRDRRRDRDRDRDRDRDHKRERDRGD---RGEKREERVPDNGMVMEQAEETSQD 443
Score = 78 (32.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 202 DRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESE 261
+RR RS + R++ RE R +DK + D + + + R D RR R ++ E +
Sbjct: 252 ERRRRSRSREKEERKRSRE-RSRDKDKDKDKDKDKEKDKDKDR-DRKRRSRSRERKRERD 309
Query: 262 SYLREDQDRRGGD 274
+ +DR G+
Sbjct: 310 RDREKKEDRVEGE 322
Score = 74 (31.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNN-EFEARSREDHYRRDEKRPKR 257
++S +EE++ R R+K + D + +DK + D + + +RSRE RD R K+
Sbjct: 257 SRSREKEERKRSRERSRDKDK-DKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKK 315
Query: 258 HES-ESYLREDQDRRGGDKSSTG 279
+ E + E D D + TG
Sbjct: 316 EDRVEGEVPESVDVPQDD-AQTG 337
Score = 69 (29.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 210 IRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQD 269
++ + EK R D R D+ R D + R R H RD +R K E + R D+D
Sbjct: 346 LKQEPEEKNR-DRDRERDREKDRDKDRDRDRDR-RRSH--RDRERDKDRERDRDRRRDRD 401
Query: 270 RRGGDKSSTGRGDSSSHRHRER 291
R D+ D R R+R
Sbjct: 402 R---DRDR----DRDHKRERDR 416
Score = 59 (25.8 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPKRH 258
+ DR EK+ R + E P ++D ++ D E + E + RD +R +
Sbjct: 307 ERDRDREKKEDRVEG-EVPESVDVPQDDAQTGDLGIDGIELKQEPEEKNRDRDRERDREK 365
Query: 259 ESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ + D+DRR + D R R R
Sbjct: 366 DRDKDRDRDRDRRRSHRDRERDKDRERDRDRRR 398
Score = 54 (24.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 28/96 (29%), Positives = 38/96 (39%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRD------EKRPKR 257
R+ KR R RE+ RE RE K R + E ++D D E + +
Sbjct: 293 RDRKRRSRS--RERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGDLGIDGIELKQEP 350
Query: 258 HESESYLREDQDR-RGGDKS-STGRGDSSSHRHRER 291
E ++DR + DK R SHR RER
Sbjct: 351 EEKNRDRDRERDREKDRDKDRDRDRDRRRSHRDRER 386
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 230 SRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
+RR + R+D R DE R + E E RE R DK R S R R
Sbjct: 199 TRRGGADVNIRHSGRDDTSRYDE-RDRDRERERDRRERSRER--DKERERRRSRSRERRR 255
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 165 (63.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 86 NGREFSGRALRVDNAA 101
Score = 40 (19.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 255 PKRHESESYLREDQDRRGGDKSSTGRGDSSSHR 287
P H + +R D RGG RG R
Sbjct: 354 PPMHMAPPDMRGPHDMRGGPMMGEPRGPMMEQR 386
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 167 (63.8 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 147 (56.8 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 49/165 (29%), Positives = 69/165 (41%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D +++GG+ FD TE L F++ G I +V++ R++ T + RGF FV +E D
Sbjct: 3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GRTIRVD G RG G G F
Sbjct: 63 LEGMNGKSVDGRTIRVDEAGKGGGGGGGRSGGGGSYRGGGG-----GRG----GGGGFFR 113
Query: 148 HNEQRAANTGG-GPQDRSSRWGHEKFEGFSWG-KNDSSSRATGSG 190
R GG G DRS +G + G G K+ ++G G
Sbjct: 114 GGRGRGGGGGGYGGGDRS--YGDRSYGGGGGGYKSGGGGYSSGGG 156
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 153 (58.9 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 53/172 (30%), Positives = 74/172 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRGD 142
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 143 GCKFSHNEQRAANTGGGPQDRSSR---WGHEKFEGFSWGKN-DSSSRATGSG 190
G S E R+ GG SSR G+++ G S+ + DS + G
Sbjct: 124 GG--SRFESRSGGYGGSRDYYSSRSQGGGYDRSSGGSYRDSYDSYGKWRSKG 173
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 167 (63.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 166 (63.5 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--- 89
K V+VG IP++ TE L +F++ G ++ + LV D+ +GKP+GF F Y+DQ
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 90 ---NLNGAQILGRTIRVDH 105
NLNG +I GRT+RVD+
Sbjct: 73 AMRNLNGYEIGGRTLRVDN 91
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 146 (56.5 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 47/145 (32%), Positives = 63/145 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRG- 141
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSR 166
G +F E R+ GG SSR
Sbjct: 124 GGNRF---ESRSGGYGGSRDYYSSR 145
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 146 (56.5 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 47/145 (32%), Positives = 63/145 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRG- 141
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSR 166
G +F E R+ GG SSR
Sbjct: 124 GGNRF---ESRSGGYGGSRDYYSSR 145
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 146 (56.5 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 47/145 (32%), Positives = 63/145 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRG- 141
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSR 166
G +F E R+ GG SSR
Sbjct: 124 GGNRF---ESRSGGYGGSRDYYSSR 145
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 146 (56.5 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 47/145 (32%), Positives = 63/145 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRG- 141
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSR 166
G +F E R+ GG SSR
Sbjct: 124 GGNRF---ESRSGGYGGSRDYYSSR 145
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 167 (63.8 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 168 (64.2 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 168 (64.2 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 168 (64.2 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 168 (64.2 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 168 (64.2 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 167 (63.8 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 167 (63.8 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 167 (63.8 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 167 (63.8 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 167 (63.8 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 167 (63.8 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 167 (63.8 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 167 (63.8 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 167 (63.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 167 (63.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 167 (63.8 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 167 (63.8 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 167 (63.8 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 167 (63.8 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVA 107
NG + GR +RVD+ A
Sbjct: 78 NGREFSGRALRVDNAA 93
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 144 (55.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 45/141 (31%), Positives = 62/141 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG +RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG------RGFFRGGRSRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWG 168
GG + RS +G
Sbjct: 116 RGGGDRGYGGGRFESRSGGYG 136
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 144 (55.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 51/166 (30%), Positives = 72/166 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D +++GG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G +
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGG------RGFFRGGRGRGGGDR-G 115
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSS--SRATGSGR 191
+ R N GG S G + +S G++ S RA GS R
Sbjct: 116 YGSSRFDNRSGGYGGSS---GSRDY--YSSGRSQGSYGDRAGGSYR 156
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 144 (55.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 45/141 (31%), Positives = 62/141 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG +RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG------RGFFRGGRSRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWG 168
GG + RS +G
Sbjct: 116 RGGGDRGYGGGRFESRSGGYG 136
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 144 (55.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 45/141 (31%), Positives = 62/141 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG +RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGG------RGFFRGGRSRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWG 168
GG + RS +G
Sbjct: 116 RGGGDRGYGGGRFESRSGGYG 136
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 144 (55.7 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QR--NNL 91
VYVG PF TE +L F+ G+I +V +V D+ TG+PRGFAF+ + + QR +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 92 NGAQILGRTIRVD 104
NGA+ GR +RV+
Sbjct: 67 NGAEFNGRPLRVN 79
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 115 (45.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE--DQRNN- 90
D+ + V I F T DL +FA+ G++VDV + RD+ TG RGFAFV Y+ D+ +
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 91 ---LNGAQILGRTIRV 103
L+G + GR I V
Sbjct: 74 VERLDGRVVDGREITV 89
Score = 87 (35.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 33/110 (30%), Positives = 43/110 (39%)
Query: 183 SSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEA 241
S R + S R + + D R+ RS +D RE+ E D R RSR S + +
Sbjct: 138 SPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKRRV 197
Query: 242 RSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R R D+ R R S S R K+S R S R ER
Sbjct: 198 RGRYDNESRSHSRSL---SASPARRSPRSSSPQKTSPAREVSPDKRSNER 244
Score = 81 (33.6 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 32/107 (29%), Positives = 46/107 (42%)
Query: 184 SRATGSGRVALEGNPNQSDRREEKRSIRHDH--REKPREDHGRREDKRSRRHSDNNEFEA 241
SR + S +P +S +RS R R + R+D+ R +D R R S ++
Sbjct: 113 SRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDY-REKDYRKRSRS--RSYDR 169
Query: 242 RSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRH 288
R R + RD +R R S S D+ RR GR D+ S H
Sbjct: 170 RERHEEKDRDHRRRTRSRSAS---PDEKRR-----VRGRYDNESRSH 208
Score = 79 (32.9 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 35/117 (29%), Positives = 46/117 (39%)
Query: 177 WGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR-EKPREDHGRREDKRSRRHSD 235
+ K ++ GRV P RR RS R + R RR +RSR
Sbjct: 91 FAKYGPNAEKISKGRVV---EPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSP-- 145
Query: 236 NNEFEARSREDHYRRDEKRPKRHESESY-LREDQDRRGGDKSSTGRGDSSSHRHRER 291
RSR+D YR + R KR S SY RE + + D R S+S + R
Sbjct: 146 ----RRRSRDD-YREKDYR-KRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKRR 196
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 116 (45.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V I +D TE L F G I + +V +K TGKPRG+AF+ YE +R+ +
Sbjct: 105 LFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 92 NGAQILGRTIRVD 104
+G +I GR + VD
Sbjct: 165 DGKKIDGRRVLVD 177
Score = 92 (37.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 39/160 (24%), Positives = 58/160 (36%)
Query: 131 RAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATG-- 188
R +RG G+ + S + R + + R + E+ +G G+ G
Sbjct: 286 RERERGGAGAGESRERSRDRDRDRDRKRRSRSRDRKRDRERGKGAEGGEEGMGGLVDGMM 345
Query: 189 --SGRVALE----GNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEAR 242
G +E G P + + + R R+K RE R+ KRS R D R
Sbjct: 346 PEGGDRGIEDPLGGEPGRGEEGGPEGEERGRDRDKDRERD--RDRKRSHRDKDRERDRDR 403
Query: 243 SREDHYRRDEKRPKRHESESYLREDQD-RRGGDKSSTGRG 281
R+ RD KR + RED+ GD G G
Sbjct: 404 RRDRDRDRDHKRDRGDRDRGERREDRHITSSGDHEGLGNG 443
Score = 83 (34.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 28/102 (27%), Positives = 41/102 (40%)
Query: 196 GNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHY-----RR 250
G+ DR E + R R+K R + R + RRH+ ++E E + D RR
Sbjct: 225 GSDRDRDRGERRERSRERDRDKERGERRRSRSRERRRHTRSHERERAAAGDEAGGSSRRR 284
Query: 251 DEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSH-RHRER 291
+ +R + RE R D+ R S R RER
Sbjct: 285 ERERERGGAGAGESRERSRDRDRDRDRKRRSRSRDRKRDRER 326
Score = 81 (33.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 30/110 (27%), Positives = 46/110 (41%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPR--EDHG----RREDKRSRR 232
+ + R+ R G +S RE +R R RE+ ++ G RRE +R R
Sbjct: 232 RGERRERSRERDRDKERGERRRSRSRERRRHTRSHERERAAAGDEAGGSSRRRERERERG 291
Query: 233 HSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDR-RGGDKSSTGRG 281
+ E RSR+ RD KR R + D++R +G + G G
Sbjct: 292 GAGAGESRERSRDRDRDRDRKRRSRSRDR---KRDRERGKGAEGGEEGMG 338
Score = 79 (32.9 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 219 REDHGRREDKR--SRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDR-RGGDK 275
R+D R +D+ S R D E RSRE RD++R +R S S R R ++
Sbjct: 213 RDDTSRYDDRPIGSDRDRDRGERRERSRERD--RDKERGERRRSRSRERRRHTRSHERER 270
Query: 276 SSTG--RGDSSSHRHRER 291
++ G G SS R RER
Sbjct: 271 AAAGDEAGGSSRRRERER 288
Score = 60 (26.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 20/74 (27%), Positives = 25/74 (33%)
Query: 220 EDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS--- 276
ED E R E R R+ RD R + H + R+ RR D+
Sbjct: 354 EDPLGGEPGRGEEGGPEGEERGRDRDKDRERDRDRKRSHRDKDRERDRDRRRDRDRDRDH 413
Query: 277 STGRGDSSSHRHRE 290
RGD RE
Sbjct: 414 KRDRGDRDRGERRE 427
Score = 46 (21.3 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 230 SRRHSDNNEFEARSREDHYRRDEKRP---KRHESESYLREDQDRRGGDKSSTGRGDSSSH 286
+RR + + R+D R D+ RP R RE R DK RG+
Sbjct: 199 TRRGGADVNIKHSGRDDTSRYDD-RPIGSDRDRDRGERRERSRERDRDKE---RGERRRS 254
Query: 287 RHRER 291
R RER
Sbjct: 255 RSRER 259
Score = 43 (20.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/76 (26%), Positives = 28/76 (36%)
Query: 163 RSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH 222
R +R HE+ + + SSR R G + RE R D R++ R
Sbjct: 261 RHTR-SHERERAAAGDEAGGSSRRRERERE--RGGAGAGESRERSRDRDRD-RDRKRRSR 316
Query: 223 GRREDKRSRRHSDNNE 238
R + KR R E
Sbjct: 317 SR-DRKRDRERGKGAE 331
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 141 (54.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 55/166 (33%), Positives = 72/166 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D + VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGG------RGFFRGGRGRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS-----SSRATG 188
GGG DR +G +F+ S G N S SSR+ G
Sbjct: 116 R--------GGG--DRG--YGGSRFDSRSGGYNGSRDYYNSSRSQG 149
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 141 (54.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 55/166 (33%), Positives = 72/166 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D + VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGG------RGFFRGGRGRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS-----SSRATG 188
GGG DR +G +F+ S G N S SSR+ G
Sbjct: 116 R--------GGG--DRG--YGGSRFDSRSGGYNGSRDYYNSSRSQG 149
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 54/165 (32%), Positives = 72/165 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D + VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G FS
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGG------RGFFRGGRGRGRG--FS 115
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS----SSRATG 188
GGG DR +G +F+ S G N S +SR+ G
Sbjct: 116 R--------GGG--DRG--YGGSRFDSRSGGYNGSRDYYNSRSQG 148
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 38/116 (32%), Positives = 52/116 (44%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGEC 138
+NG + GR IRVD G R F RGEC
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGEC 119
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QR--NNL 91
VYVG +P+ TE ++ FA G + +V +V D+ TG+PRGFAFV + + QR L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 92 NGAQILGRTIRVDH 105
NG GR +RV++
Sbjct: 68 NGVAFNGRNLRVNY 81
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 157 (60.3 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN----- 89
S V+VG IP+ L+E + +F++ G++++ LV D+ TGKP+GF F Y D +
Sbjct: 7 SRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAV 66
Query: 90 -NLNGAQILGRTIRVD 104
NLN +I+GR +RVD
Sbjct: 67 RNLNDTEIMGRKLRVD 82
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 139 (54.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 40/160 (25%), Positives = 67/160 (41%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLN 92
+VGG+ + + DL F+Q G+++D ++ D+ +G+ RGF FV ++D++ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 93 GAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQR 152
G ++ GR I V+ G + G G E+R
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERR 128
Query: 153 AAN--TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSG 190
+ +GGG R G + EG +G D S G G
Sbjct: 129 SGGYGSGGGGGGRGYGGGGRR-EGGGYGGGDGGSYGGGGG 167
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 127 (49.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 73 (30.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 40/133 (30%), Positives = 52/133 (39%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 154 SGGPPPKRSTPSGPVRSSSGMGGRTPVSR-----GRDSYGGPP----RREPLPS-RRDVY 203
Query: 216 EKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRG-GD 274
PR+D +D S R ++ R D+ R S S R+D RG GD
Sbjct: 204 LSPRDDGYSTKDSYSSRDYPSS----RDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGD 259
Query: 275 KSSTGRG-DSSSH 286
+ GR D S H
Sbjct: 260 RDGYGRDRDYSDH 272
Score = 55 (24.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 37/149 (24%), Positives = 52/149 (34%)
Query: 146 FSHNEQRAANTGGGPQDRSSRWGHEK--FEGFSWGKNDSSSRATGSGRVALEGNPNQSDR 203
+SH+ R G DR +G ++ + S G S + G+ R A P +
Sbjct: 243 YSHSSSRDDYPSRGYGDRDG-YGRDRDYSDHPSGGSYRDSYESYGNSRSA---PPTRGPP 298
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKR 257
S R+D R+ +G D S SD R R R + P
Sbjct: 299 PSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPP 357
Query: 258 HESESYLREDQDR---RGGDKSSTGRGDS 283
+S S R RGG +S G G S
Sbjct: 358 RDSYSSSSRGAPRGGGRGGSRSDRGGGRS 386
Score = 55 (24.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 45/161 (27%), Positives = 60/161 (37%)
Query: 147 SHNEQRAANTG-GGPQDRSSRWGHEKFEGFSWGKNDSSSRA---TGSGRVALEGNP--NQ 200
S R G GG + SR G+ G+S N SSSR G G P +
Sbjct: 102 SRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKR 161
Query: 201 SDRREEKRSIRHDHREKP----REDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RD 251
S RS P R+ +G RRE SRR + + S +D Y RD
Sbjct: 162 STPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRD 221
Query: 252 EKRPKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
P ++ Y +D D S S+ R D S + +R
Sbjct: 222 Y--PSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDR 260
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 109 (43.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRN----- 89
++V + +D TE L F G I +++V +KG+ GKPRG+AF+ YE +R+
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAY 164
Query: 90 -NLNGAQILGRTIRVD 104
+ +G +I GR + VD
Sbjct: 165 KHADGKKIDGRRVLVD 180
Score = 96 (38.9 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDR-REEKRSIRHDHREKPRE-DHGRREDKRSRRHSDN 236
++D+ G + L+ P + R R+ +R + EK R+ D R D+R R H D
Sbjct: 326 QDDAQIGDLGIDGIELKQEPEEKSRERDRERDRDREKGEKDRDKDRDRDRDRR-RSHRDR 384
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+ + R R+ RRD R + + + + ++DR GD+S
Sbjct: 385 DREKDRDRDRDRRRDRDRDRERDKDH--KRERDR--GDRS 420
Score = 94 (38.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 188 GSGRVALEGNPNQSDRREEKRSIRHDH-REKPREDHGRREDK--RSRRHSDNNEFEARSR 244
G+ R + N S R + R D RE+ R + R +K R RR S + E +SR
Sbjct: 201 GTRRGGADVNIRHSGRDDTSRYDERDRERERDRRERSREREKEPRERRRSRSRERRRKSR 260
Query: 245 EDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ + KR + + +D+D + D+ R S R RER
Sbjct: 261 SRE-KEERKRTREKSKDKDKEKDKDNKDRDRKRRSR---SRERKRER 303
Score = 89 (36.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSRE-DHYRRDE 252
+G ++ R+ R R HR++ RE D R D+R R D + RE D R E
Sbjct: 362 KGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRRRDRDRDRERDKDHKRERDRGDRSE 421
Query: 253 KRPKRHESESYLREDQDRRGGD 274
KR +R + E + D
Sbjct: 422 KREERVPDNGMVMEQAEETSQD 443
Score = 89 (36.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 196 GNPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
G + S E R D RE+ RE + RE +RSR + +R +E+ R EK
Sbjct: 215 GRDDTSRYDERDRERERDRRERSREREKEPRERRRSRSRERRRKSRSREKEERKRTREKS 274
Query: 255 PKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
+ + + +D+DR+ +S + + R ++
Sbjct: 275 KDKDKEKDKDNKDRDRKRRSRSRERKRERDRDREKK 310
Score = 81 (33.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDH-REKPREDHGRREDKRSRRHSDN 236
G++D+S + +R +E R R RE+ R+ R +++R R +
Sbjct: 215 GRDDTSRYDERDRERERDRRERSREREKEPRERRRSRSRERRRKSRSREKEERKRTREKS 274
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLRE-DQDR 270
+ + +D+ RD KR R S RE D+DR
Sbjct: 275 KDKDKEKDKDNKDRDRKR--RSRSRERKRERDRDR 307
Score = 77 (32.2 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 202 DRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNN-EFEARSREDHYRRDEKRPKRHES 260
+RR + RS + R++ RE ++ ++ + + D + + +RSRE RD R K+ E
Sbjct: 254 ERRRKSRSREKEERKRTREKSKDKDKEKDKDNKDRDRKRRSRSRERKRERDRDREKKEER 313
Query: 261 -ESYLREDQD 269
E+ + E D
Sbjct: 314 VEAEVPEADD 323
Score = 77 (32.2 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 202 DR-REEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHY-RRDEKRP--- 255
DR R+ +RS R REK R+ D RR D+ R D + R R D +R+E+ P
Sbjct: 372 DRDRDRRRSHRDRDREKDRDRDRDRRRDRDRDRERDKDHKRERDRGDRSEKREERVPDNG 431
Query: 256 ---KRHESES---YLREDQDRRGGDKSSTGRG 281
++ E S YL ++ + G ST G
Sbjct: 432 MVMEQAEETSQDMYLDQESMQSGDGYLSTENG 463
Score = 70 (29.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 27/103 (26%), Positives = 41/103 (39%)
Query: 202 DRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRD--------EK 253
D ++ R R RE+ RE RE K R ++ E + ++D D ++
Sbjct: 284 DNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQDDAQIGDLGIDGIELKQ 343
Query: 254 RPKRHESESYLREDQDRRGGDKS-----STGRGDSSSHRHRER 291
P+ E D+DR G+K R SHR R+R
Sbjct: 344 EPEEKSRERDRERDRDREKGEKDRDKDRDRDRDRRRSHRDRDR 386
Score = 68 (29.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 28/98 (28%), Positives = 39/98 (39%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKR-SRRHSDNNEF----EARSREDHYRRDEKR 254
+ DR EK+ R + E P D ++D + D E E +SRE RD R
Sbjct: 302 ERDRDREKKEERVE-AEVPEADDAPQDDAQIGDLGIDGIELKQEPEEKSRERDRERDRDR 360
Query: 255 PKRHESESYLRE-DQDRRGGDKSSTGRGDSSSHRHRER 291
K + R+ D+DRR + D R R R
Sbjct: 361 EKGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRRR 398
Score = 64 (27.6 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 25/105 (23%), Positives = 39/105 (37%)
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQS 201
DG + + + +DR G EK + D R + R +
Sbjct: 337 DGIELKQEPEEKSRERDRERDRDREKG-EKDRDKDRDR-DRDRRRSHRDRDREKDRDRDR 394
Query: 202 DRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSRE 245
DRR ++ R ++ RE D G R +KR R DN ++ E
Sbjct: 395 DRRRDRDRDRERDKDHKRERDRGDRSEKREERVPDNGMVMEQAEE 439
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 116 (45.9 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 87 (35.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 42/150 (28%), Positives = 58/150 (38%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSH 286
RHES S D G + GR D S H
Sbjct: 322 RHESYSRGYSYHDGYG---EALGR-DHSEH 347
Score = 65 (27.9 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 45 (20.9 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 43/164 (26%), Positives = 65/164 (39%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFE-GFSW----GK---NDSSSRATGSG-RVALE--GN- 197
E + G G +D HE + G+S+ G+ D S +GS R AL+ G
Sbjct: 304 EYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTS 363
Query: 198 ----PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEK 253
P + R S H + R+ +GR + +S +F RE R+D++
Sbjct: 364 HGAPPARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQR 418
Query: 254 RPKR--------HE---SESYLREDQDRRGGDKSSTGRGDSSSH 286
P E S SY+ D GG+ S +GDSS +
Sbjct: 419 NPPSLGRVLPDPREACGSSSYVASIVD--GGESRSE-KGDSSRY 459
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 116 (45.9 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 87 (35.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 42/150 (28%), Positives = 58/150 (38%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSH 286
RHES S D G + GR D S H
Sbjct: 322 RHESYSRGYSYHDGYG---EALGR-DHSEH 347
Score = 65 (27.9 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 45 (20.9 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 43/164 (26%), Positives = 65/164 (39%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFE-GFSW----GK---NDSSSRATGSG-RVALE--GN- 197
E + G G +D HE + G+S+ G+ D S +GS R AL+ G
Sbjct: 304 EYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTA 363
Query: 198 ----PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEK 253
P + R S H + R+ +GR + +S +F RE R+D++
Sbjct: 364 HGAPPARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQR 418
Query: 254 RPKR--------HE---SESYLREDQDRRGGDKSSTGRGDSSSH 286
P E S SY+ D GG+ S +GDSS +
Sbjct: 419 NPPSLGRVLPDPREACGSSSYVASIVD--GGESRSE-KGDSSRY 459
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 138 (53.6 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 42/132 (31%), Positives = 60/132 (45%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD G R F RG RG G +
Sbjct: 64 MAGMNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSS-----GGGRGFFRGGRGRGGG-GYG 117
Query: 148 HNEQRAANTGGG 159
+ + +GGG
Sbjct: 118 GSSRFDNRSGGG 129
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 136 (52.9 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVD 104
+NG + GR IRVD
Sbjct: 64 MMAMNGKSVDGRQIRVD 80
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 136 (52.9 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVD 104
+NG + GR IRVD
Sbjct: 64 MMAMNGKSVDGRQIRVD 80
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 136 (52.9 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + +D+T +L + F Q GEI + L+ D+ TG+ +GFAF+ Y Q +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 92 NGAQILGRTIRVD 104
NG + GR IRV+
Sbjct: 80 NGIDLQGRKIRVN 92
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 136 (52.9 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + +D+T +L + F Q GEI + L+ D+ TG+ +GFAF+ Y Q +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 92 NGAQILGRTIRVD 104
NG + GR IRV+
Sbjct: 80 NGIDLQGRKIRVN 92
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 104 (41.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 35/119 (29%), Positives = 52/119 (43%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGR---REDKRSRRHS- 234
+ D G G L+ P + E +RS + R++ R D GR + RSR S
Sbjct: 228 REDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRER-DRGRGAVASNGRSRSRSR 286
Query: 235 DNNEFEARSRE--DHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ + A SRE D + R ++R + E + D++R K S R SS RER
Sbjct: 287 ERRKRRAGSRERYDEFDRRDRRDRERERD----RDREREKKKKRSKSRERESSRERRER 341
Score = 98 (39.6 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89
+++ I +D +E L F G I + L+ D+ +GKP+G+AF+ YE +R+
Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERD 155
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 37/137 (27%), Positives = 54/137 (39%)
Query: 150 EQRAANTGGGPQDRSSR----WGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRRE 205
++ GGG +R +G E+ S + D R G G VA G R
Sbjct: 230 DREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRE-RDRGRGAVASNGRSRSRSRER 288
Query: 206 EKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
KR R RE R D R D+R R + + R RE +R + R +R S
Sbjct: 289 RKR--RAGSRE--RYDEFDRRDRRDRERERDRD---REREKKKKRSKSR-ERESSRERRE 340
Query: 266 EDQDRRGGDKSSTGRGD 282
++RR ++ + GD
Sbjct: 341 RKRERRDRERGTGSGGD 357
Score = 69 (29.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 27/107 (25%), Positives = 42/107 (39%)
Query: 185 RATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSR 244
R G G N + + R RE+ R + R + + R +N +AR
Sbjct: 189 RRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPG 248
Query: 245 EDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+ + +R + E RE +DR G +S GR S S R+R
Sbjct: 249 RG-FGAERRRSRSRERRD--RE-RDRGRGAVASNGRSRSRSRERRKR 291
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 123 (48.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLN 92
+VGG+ + + L FAQ G+++D ++ D+ TG+ RGF FV ++D++ +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 93 GAQILGRTIRVD 104
G + GR+I V+
Sbjct: 71 GQDLDGRSITVN 82
Score = 47 (21.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGR 191
DG + NE ++ +GGG R G + G S G GR
Sbjct: 75 DGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGGGR 124
Score = 39 (18.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSG 190
+GGG E G+S G SSR G G
Sbjct: 112 SGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGG 146
>DICTYBASE|DDB_G0282873 [details] [associations]
symbol:DDB_G0282873 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0282873 GO:GO:0000166
EMBL:AAFI02000047 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG313287
RefSeq:XP_639372.1 ProteinModelPortal:Q54RW5
EnsemblProtists:DDB0233751 GeneID:8623811 KEGG:ddi:DDB_G0282873
InParanoid:Q54RW5 OMA:RDRDDHD Uniprot:Q54RW5
Length = 952
Score = 119 (46.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 46/146 (31%), Positives = 62/146 (42%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRV---ALEGN-PNQ--SDRREEKRSIR 211
GGP + G G S G R S + + G+ P++ D EKR
Sbjct: 442 GGPPPPNGSGGSGSSVG-SGGSGSGGGRPYSSSKRDEWSSGGSSPDRYGGDYHGEKRKRD 500
Query: 212 HDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR-HESESYLREDQD 269
D E+ RE D R ++R R DN R R+D+ RRD R + H+S S R+ D
Sbjct: 501 DDVDERERERDRERDRERRERDDYDNRRDRDRDRDDYDRRDRDRDRDDHDSGSSRRDRDD 560
Query: 270 RRGGDKSSTGRG----DSSSHRHRER 291
G+ SS R DS S R+R
Sbjct: 561 HDSGNNSSNRRDRDDHDSGSSNRRDR 586
Score = 116 (45.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 35/115 (30%), Positives = 52/115 (45%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDH--GRREDKRSRRHSDN 236
++D S ++ R + N S+RR+ + R+DH G + S R D
Sbjct: 546 RDDHDSGSSRRDRDDHDSGNNSSNRRDRDDHDSGSSNRRDRDDHDSGSSSNSGSSRR-DR 604
Query: 237 NEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++ ++ S RRD R H+S S R D+DR D SS+ R D R RER
Sbjct: 605 DDHDSNSNSSS-RRDRDRDD-HDSSSSSRRDRDRDDHDSSSSSRRDRDRDRDRER 657
Score = 113 (44.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 38/149 (25%), Positives = 61/149 (40%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
S ++ ++G +R R H+ G S + D +GS + ++ D
Sbjct: 554 SRRDRDDHDSGNNSSNRRDRDDHDS--GSS-NRRDRDDHDSGSSSNSGSSRRDRDDHDSN 610
Query: 207 KRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYR-----RDEKRPKRHESE 261
S R++ R+DH R R D+++ + SR D R RD R SE
Sbjct: 611 SNS--SSRRDRDRDDHDSSSSSRRDRDRDDHDSSSSSRRDRDRDRDRERDRDRSSDRRSE 668
Query: 262 SYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
S +++D R ++SS D S R RE
Sbjct: 669 STRDKERDDRSDNRSSRDHYDRDSTRDRE 697
Score = 112 (44.5 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 40/158 (25%), Positives = 63/158 (39%)
Query: 141 GDGCKFSHNEQRAANTGGGPQDR--SSRWGHEKFEGFSWGKNDSS-SRATGSGRVALEGN 197
G G +S +++ ++GG DR G ++ + + R R +
Sbjct: 465 GGGRPYSSSKRDEWSSGGSSPDRYGGDYHGEKRKRDDDVDERERERDRERDRERRERDDY 524
Query: 198 PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSD--NNEFEARSREDHYRRDEKRP 255
N+ DR ++ R++ R+DH +R R D NN R R+DH R
Sbjct: 525 DNRRDRDRDRDDYDRRDRDRDRDDHDSGSSRRDRDDHDSGNNSSNRRDRDDHDSGSSNRR 584
Query: 256 KR--HESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R H+S S RR D + +SSS R R+R
Sbjct: 585 DRDDHDSGSSSNSGSSRRDRDDHDSN-SNSSSRRDRDR 621
Score = 106 (42.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 38/154 (24%), Positives = 61/154 (39%)
Query: 136 GECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDS--SSRATGSGRVA 193
G R D + H+ ++N+G +DR + D SS ++ R
Sbjct: 579 GSSNRRD--RDDHDSGSSSNSGSSRRDRDDHDSNSNSSSRRDRDRDDHDSSSSSRRDRDR 636
Query: 194 LEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEK 253
+ + + S RR+ R R R++ R R E R + D ++ RS DHY RD
Sbjct: 637 DDHDSSSSSRRDRDRD-RDRERDRDRSSDRRSESTRDKERDDRSD--NRSSRDHYDRDST 693
Query: 254 RPKRHESESYLREDQDRRGGDKSSTGRGDSSSHR 287
R + S S +R D + + DS+ R
Sbjct: 694 RDRETSSSS----GSGKRENDSYPSSKSDSNRDR 723
Score = 101 (40.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/153 (23%), Positives = 63/153 (41%)
Query: 139 TRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNP 198
++ D + N ++ T G ++ R + + S G+ DS + SG GN
Sbjct: 715 SKSDSNRDRENRDYSSTTSGSKRESKDR-ASDSNQSSSGGRKDSDHSYSSSG----SGNR 769
Query: 199 NQS-DRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR 257
++ DR + S R+ SR SD NE R+R+ + + + +R +
Sbjct: 770 DRDRDRDRDTSSNARKETSDNRDRDSSSTSTNSRDRSDKNE-NTRTRDSNKKDESQRSEP 828
Query: 258 HESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
S S R+ +D K ST +SS+ R+
Sbjct: 829 SSSSSSSRKKED----SKDSTTSSSTSSNNERD 857
Score = 88 (36.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE 85
S +Y+ G+ + T+ L VF + G+IV + + ++ GK +G+AFV +E
Sbjct: 162 SPALYISGLEWWTTDQQLENVFLEFGKIVTLKIFENENNGKSKGYAFVEFE 212
Score = 78 (32.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 34/150 (22%), Positives = 59/150 (39%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GNPNQSDRR 204
+ + + ++++G G ++ S + D SS +GS R + + + NQS
Sbjct: 693 TRDRETSSSSGSGKRENDSYPSSKSDSNRDRENRDYSSTTSGSKRESKDRASDSNQSSSG 752
Query: 205 EEKRSIRHDHREKPREDHGRREDK-RSRRHSDNNEFEA---RSREDHYRRDEKRPKRHES 260
K S DH R D+ R R S N E R R+ R + ++
Sbjct: 753 GRKDS---DHSYSSSGSGNRDRDRDRDRDTSSNARKETSDNRDRDSSSTSTNSRDRSDKN 809
Query: 261 ESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
E+ D +++ + S SSS R +E
Sbjct: 810 ENTRTRDSNKKDESQRSEPSSSSSSSRKKE 839
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 117 (46.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---- 89
D VYVGG+P+D+TE + VF+ G ++ V +V D+ + + + FV + ++R+
Sbjct: 5 DGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDA 63
Query: 90 --NLNGAQILGRTIRVDHV 106
+++G I GR +RV+ V
Sbjct: 64 IEDMDGKSIGGRAVRVNDV 82
Score = 78 (32.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
+GN + DR + RS D + R+DH E +R+ HS ++FE R+ DH D
Sbjct: 111 DGN-YERDRYSD-RSRERDRSQDRRKDHRYIEKERAYEHS--HDFERRN--DHDMVDRNG 164
Query: 255 PKRHESESYLREDQDRRGGDKS--STGRGDSSSHRHRER 291
K + ++ D RG D+S GRG + + H R
Sbjct: 165 YKERVFDG---DEGDWRG-DRSYVDNGRGINGTSAHEGR 199
Score = 65 (27.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/77 (27%), Positives = 30/77 (38%)
Query: 213 DHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDR-- 270
D R D D+ S R + + + R R+DH +++R H + R D D
Sbjct: 103 DRSPDRRSDGNYERDRYSDRSRERDRSQDR-RKDHRYIEKERAYEHSHDFERRNDHDMVD 161
Query: 271 RGGDKSSTGRGDSSSHR 287
R G K GD R
Sbjct: 162 RNGYKERVFDGDEGDWR 178
Score = 42 (19.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 212 HDHR--EKPREDHGRREDKRSRRHSDNNEFEARSRED 246
H+ R E RED + R R H N+ + + +ED
Sbjct: 196 HEGRSQETKREDSTILDGGRGRDHFSNSSGDHQVKED 232
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGTSLHGKAIKVE 81
Score = 82 (33.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 41/150 (27%), Positives = 57/150 (38%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+ R S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSH 286
RHES S D G + GR D S H
Sbjct: 322 RHESYSRGYSYHDGYG---EALGR-DHSEH 347
Score = 65 (27.9 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 49 (22.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 42/164 (25%), Positives = 66/164 (40%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFE-GFSW----GK---NDSSSRATGSG-RVALE--GN- 197
E + G G +D HE + G+S+ G+ D S +GS R AL+ G
Sbjct: 304 EYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTS 363
Query: 198 ----PNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEK 253
P + R S H + R+ +GR + +S +F RE R+D++
Sbjct: 364 HGAPPARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQR 418
Query: 254 RP-----------KRHESESYLREDQDRRGGDKSSTGRGDSSSH 286
P + + S SY+ D GG+ S +GDSS +
Sbjct: 419 NPPSLGRVLPDPREAYGSSSYVASIVD--GGESRSE-KGDSSRY 459
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 154 (59.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 73/263 (27%), Positives = 106/263 (40%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G +V+V L++D+ T K RGFAFV +E D L
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
NG + G+ I+V+ A G R RG +RG G
Sbjct: 70 NGKALDGKPIKVEQ-ATKPSFSAPSRRGPPPPPRSRGPPRGL-RG--SRGGGSSRGQMPL 125
Query: 152 RAA---NTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKR 208
+ +GG P RS+ G + G G+ S G G +P S RR+
Sbjct: 126 KRGPPPRSGGPPPKRSAPSGPVRSSGMG-GRAPLSRERDGYGAPPRR-DPIPS-RRDVYM 182
Query: 209 SIRHD-HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRED 267
S R D + K R D D S R D+ ++ R+ YR R + S D
Sbjct: 183 SPRDDGYSGKDRYDGYSGRDYGSSR--DSRDYGPPPRDYAYRDYGHSSSRDDYGSRGYSD 240
Query: 268 QDRRGGDKSSTGRGDSSSHRHRE 290
+D GG S S +R+
Sbjct: 241 RDGYGGRDSRDYSDHPSGGSYRD 263
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/126 (27%), Positives = 50/126 (39%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESES 262
RHES S
Sbjct: 322 RHESYS 327
Score = 65 (27.9 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 58 (25.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 37/130 (28%), Positives = 49/130 (37%)
Query: 168 GHE-KFEGFSWG-KNDSSSRATGSGRVALEGNPNQS---DRREEKRSIRHDHREKPRED- 221
GH + E S G +N SSR T G+ + RR+E S + +R RE
Sbjct: 244 GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETR 303
Query: 222 --------HGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
HG R+ SRRH E +R +H E R Y D
Sbjct: 304 EYAPPSRGHGYRDYGHSRRH----ESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSW 359
Query: 274 DKSSTGRGDS 283
D+ S+ RG S
Sbjct: 360 DEHSS-RGYS 368
Score = 55 (24.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 38/159 (23%), Positives = 64/159 (40%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGF--SWGKNDSSSRATGSGRVALE--GN-----P 198
H + + G D S G+ +G+ + G++ S + S R AL+ G P
Sbjct: 346 HRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRP--- 255
+ R S H + R+ +GR + +S +F RE R+D++ P
Sbjct: 406 ARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQRNPPSL 460
Query: 256 --------KRHESESYLREDQDRRGGDKSSTGRGDSSSH 286
+ + S SY+ D GG+ S +GDSS +
Sbjct: 461 GRVLPDPREAYGSSSYVASIVD--GGESRSE-KGDSSRY 496
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/126 (27%), Positives = 50/126 (39%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESES 262
RHES S
Sbjct: 322 RHESYS 327
Score = 65 (27.9 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 58 (25.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 37/130 (28%), Positives = 49/130 (37%)
Query: 168 GHE-KFEGFSWG-KNDSSSRATGSGRVALEGNPNQS---DRREEKRSIRHDHREKPRED- 221
GH + E S G +N SSR T G+ + RR+E S + +R RE
Sbjct: 244 GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETR 303
Query: 222 --------HGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
HG R+ SRRH E +R +H E R Y D
Sbjct: 304 EYAPPSRGHGYRDYGHSRRH----ESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSW 359
Query: 274 DKSSTGRGDS 283
D+ S+ RG S
Sbjct: 360 DEHSS-RGYS 368
Score = 51 (23.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/159 (24%), Positives = 63/159 (39%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGF--SWGKNDSSSRATGSGRVALE--GN-----P 198
H + + G D S G+ +G+ + G++ S + S R AL+ G P
Sbjct: 346 HRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGAPP 405
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR- 257
+ R S H + R+ +GR + +S +F RE R+D++ P
Sbjct: 406 ARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQRNPPSL 460
Query: 258 -------HE---SESYLREDQDRRGGDKSSTGRGDSSSH 286
E S SY+ D GG+ S +GDSS +
Sbjct: 461 GRVLPDPREACGSSSYVASIVD--GGESRSE-KGDSSRY 496
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/126 (27%), Positives = 50/126 (39%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESES 262
RHES S
Sbjct: 322 RHESYS 327
Score = 65 (27.9 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 58 (25.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 37/130 (28%), Positives = 49/130 (37%)
Query: 168 GHE-KFEGFSWG-KNDSSSRATGSGRVALEGNPNQS---DRREEKRSIRHDHREKPRED- 221
GH + E S G +N SSR T G+ + RR+E S + +R RE
Sbjct: 244 GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETR 303
Query: 222 --------HGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
HG R+ SRRH E +R +H E R Y D
Sbjct: 304 EYAPPSRGHGYRDYGHSRRH----ESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSW 359
Query: 274 DKSSTGRGDS 283
D+ S+ RG S
Sbjct: 360 DEHSS-RGYS 368
Score = 51 (23.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/159 (24%), Positives = 63/159 (39%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGF--SWGKNDSSSRATGSGRVALE--GN-----P 198
H + + G D S G+ +G+ + G++ S + S R AL+ G P
Sbjct: 346 HRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR- 257
+ R S H + R+ +GR + +S +F RE R+D++ P
Sbjct: 406 ARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQRNPPSL 460
Query: 258 -------HE---SESYLREDQDRRGGDKSSTGRGDSSSH 286
E S SY+ D GG+ S +GDSS +
Sbjct: 461 GRVLPDPREACGSSSYVASIVD--GGESRSE-KGDSSRY 496
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/126 (27%), Positives = 50/126 (39%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESES 262
RHES S
Sbjct: 322 RHESYS 327
Score = 65 (27.9 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 58 (25.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 37/130 (28%), Positives = 49/130 (37%)
Query: 168 GHE-KFEGFSWG-KNDSSSRATGSGRVALEGNPNQS---DRREEKRSIRHDHREKPRED- 221
GH + E S G +N SSR T G+ + RR+E S + +R RE
Sbjct: 244 GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETR 303
Query: 222 --------HGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
HG R+ SRRH E +R +H E R Y D
Sbjct: 304 EYAPPSRGHGYRDYGHSRRH----ESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSW 359
Query: 274 DKSSTGRGDS 283
D+ S+ RG S
Sbjct: 360 DEHSS-RGYS 368
Score = 51 (23.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/159 (24%), Positives = 63/159 (39%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGF--SWGKNDSSSRATGSGRVALE--GN-----P 198
H + + G D S G+ +G+ + G++ S + S R AL+ G P
Sbjct: 346 HRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR- 257
+ R S H + R+ +GR + +S +F RE R+D++ P
Sbjct: 406 ARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQRNPPSL 460
Query: 258 -------HE---SESYLREDQDRRGGDKSSTGRGDSSSH 286
E S SY+ D GG+ S +GDSS +
Sbjct: 461 GRVLPDPREACGSSSYVASIVD--GGESRSE-KGDSSRY 496
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGKSLHGKAIKVE 81
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/126 (27%), Positives = 50/126 (39%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+RR S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESES 262
RHES S
Sbjct: 322 RHESYS 327
Score = 65 (27.9 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 58 (25.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 37/130 (28%), Positives = 49/130 (37%)
Query: 168 GHE-KFEGFSWG-KNDSSSRATGSGRVALEGNPNQS---DRREEKRSIRHDHREKPRED- 221
GH + E S G +N SSR T G+ + RR+E S + +R RE
Sbjct: 244 GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETR 303
Query: 222 --------HGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
HG R+ SRRH E +R +H E R Y D
Sbjct: 304 EYAPPSRGHGYRDYGHSRRH----ESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSW 359
Query: 274 DKSSTGRGDS 283
D+ S+ RG S
Sbjct: 360 DEHSS-RGYS 368
Score = 51 (23.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 39/159 (24%), Positives = 63/159 (39%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGF--SWGKNDSSSRATGSGRVALE--GN-----P 198
H + + G D S G+ +G+ + G++ S + S R AL+ G P
Sbjct: 346 HRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKR- 257
+ R S H + R+ +GR + +S +F RE R+D++ P
Sbjct: 406 ARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQRNPPSL 460
Query: 258 -------HE---SESYLREDQDRRGGDKSSTGRGDSSSH 286
E S SY+ D GG+ S +GDSS +
Sbjct: 461 GRVLPDPREACGSSSYVASIVD--GGESRSE-KGDSSRY 496
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 128 (50.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 72 NGKSLDGKAIKVE 84
Score = 62 (26.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 159 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 208
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 209 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 268
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 269 GRDRDYSDHPSGGSYR 284
Score = 57 (25.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 119 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 175
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 176 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 233
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 234 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 265
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 128 (50.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 157 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 206
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 266
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 267 GRDRDYSDHPSGGSYR 282
Score = 57 (25.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 114 (45.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD---KGTGKPRGFAFVAYEDQ----- 87
A +YVGG+P TE L F GEI DV + ++ K RGFA+V YED
Sbjct: 9 ATLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKE 68
Query: 88 -RNNLNGAQILGRTIRVDHVA 107
+N++ ++ GR I+V H A
Sbjct: 69 AMDNMDQSEFFGRIIKV-HAA 88
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 259 ESESYLRE----DQDRRGGDKSS 277
E E +L + ++DR GGD+S+
Sbjct: 106 EQEGWLAKNAVSEEDRLGGDQSA 128
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 128 (50.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 156 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 205
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 206 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 265
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 266 GRDRDYSDHPSGGSYR 281
Score = 60 (26.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 45/158 (28%), Positives = 61/158 (38%)
Query: 152 RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-- 209
R GG + SR GH G+S N SSSR G V G P +S KRS
Sbjct: 110 RGGRGSGGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAP 166
Query: 210 ---IRHDHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKR 254
+R + R+ +G RRE SRR + + S +D Y RD
Sbjct: 167 SGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY-- 224
Query: 255 PKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
P ++ Y +D D S+ R D S + +R
Sbjct: 225 PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 262
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG I +D++E + ++F++ G ++ + +V D+ TGKP+G+ F+ + D + NL
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 92 NGAQILGRTIRVDHVA 107
NG ++ GR +RVD A
Sbjct: 80 NGYELSGRILRVDSAA 95
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 72/263 (27%), Positives = 105/263 (39%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G +V+V L++D+ T K RGFAFV +E D L
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
NG + G+ I+V+ A G R RG +RG G
Sbjct: 70 NGKALDGKPIKVEQ-ATKPSFSTPSRRGPPTSPRSRGPPRGL-RG--SRGGGSSRGQMPL 125
Query: 152 RAA---NTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKR 208
+ +GG P RS+ G + G+ S G G +P S RR+
Sbjct: 126 KRGPPPRSGGPPPKRSAPSGPLRSSEMG-GRAPLSRERDGYGAPPRR-DPMPS-RRDVYM 182
Query: 209 SIRHD-HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRED 267
S R D + K R D D S R D+ ++ R+ YR R + S D
Sbjct: 183 SPRDDGYSGKDRYDGYSGRDYGSSR--DSRDYGPPPRDYSYRDYGHSSSRDDYGSRGYSD 240
Query: 268 QDRRGGDKSSTGRGDSSSHRHRE 290
+D GG S S +R+
Sbjct: 241 RDGYGGRDSRDYSDHQSGGSYRD 263
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 132 (51.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 47/160 (29%), Positives = 67/160 (41%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D +++GG+ F+ E L F + G I +V +V+D+ T + RGF FV +E D
Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFS 147
+NG + GR IRVD R F RG RG G +
Sbjct: 63 MMAMNGKSVDGRQIRVDQAGKSSGERRGGYRGGSSGG------RGFFRGGRGRGGGDR-G 115
Query: 148 HNEQRAANTGGGPQDRS-SR--WGHEKFEGFSWGKNDSSS 184
+ R N GG S SR +G + +G S+G S
Sbjct: 116 YGSSRFDNRSGGYGGSSGSRDYYGSGRSQG-SYGDRSGGS 154
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 132 (51.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVA 83
DD+SW + D +YVG +P+ + E DL F++ G I V +VR+ TG+ +G+AFV
Sbjct: 34 DDSSWKSDNNDQ--IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVT 91
Query: 84 YEDQRNNLNGAQILGRTIR 102
Y + + G+ ++
Sbjct: 92 YVTPKQAVKALDAHGKDLQ 110
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 132 (51.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVA 83
DD+SW + D +YVG +P+ + E DL F++ G I V +VR+ TG+ +G+AFV
Sbjct: 34 DDSSWKSDNNDQ--IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVT 91
Query: 84 YEDQRNNLNGAQILGRTIR 102
Y + + G+ ++
Sbjct: 92 YVTPKQAVKALDAHGKDLQ 110
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 117 (46.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 69 NGTSLHGKAIKVE 81
Score = 79 (32.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 34/126 (26%), Positives = 49/126 (38%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
R D H+ A N G P + +R G+++ N S+R S R +
Sbjct: 204 RNDRMSTRHDGY-ATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
Query: 200 QSDRREEKRSIRHDHRE--KPREDHGRREDKRSRRHS-DNNEFEARSREDHYRRDEKRPK 256
+ R S H +R+ R D R+ R S + E+ SR YR D +
Sbjct: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYR-DYGHSR 321
Query: 257 RHESES 262
RHES S
Sbjct: 322 RHESYS 327
Score = 65 (27.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 35/125 (28%), Positives = 50/125 (40%)
Query: 176 SWGKNDSSSRATGSGRVALEGN-PNQSDRREEKRSIR----HDHREKPREDHGRREDKRS 230
SW +ND S G +GN P+ + R+ R D+ R++H R +
Sbjct: 202 SW-RNDRMS-TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNH 259
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESES--YL--REDQDRRGGDKSSTGRG--D-S 283
R + ++ SR H RD +R ES S Y R ++ R S G G D
Sbjct: 260 RSSRETRDYAPPSR-GHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYG 318
Query: 284 SSHRH 288
S RH
Sbjct: 319 HSRRH 323
Score = 58 (25.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 37/130 (28%), Positives = 49/130 (37%)
Query: 168 GHE-KFEGFSWG-KNDSSSRATGSGRVALEGNPNQS---DRREEKRSIRH-DHREK---- 217
GH + E S G +N SSR T G+ + RR+E S + +HR
Sbjct: 244 GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETR 303
Query: 218 ----PREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
P HG R+ SRRH E +R +H E R Y D
Sbjct: 304 EYAPPSRGHGYRDYGHSRRH----ESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSW 359
Query: 274 DKSSTGRGDS 283
D+ S+ RG S
Sbjct: 360 DEHSS-RGYS 368
Score = 55 (24.4 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 38/159 (23%), Positives = 64/159 (40%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGF--SWGKNDSSSRATGSGRVALE--GN-----P 198
H + + G D S G+ +G+ + G++ S + S R AL+ G P
Sbjct: 346 HRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRP--- 255
+ R S H + R+ +GR + +S +F RE R+D++ P
Sbjct: 406 ARGPRMSYGGSTCHAY-SNTRDRYGRSWES----YSSCGDFHYCDREHVCRKDQRNPPSL 460
Query: 256 --------KRHESESYLREDQDRRGGDKSSTGRGDSSSH 286
+ + S SY+ D GG+ S +GDSS +
Sbjct: 461 GRVLPDPREAYGSSSYVASIVD--GGESRSE-KGDSSRY 496
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 156 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 205
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 206 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 265
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 266 GRDRDYSDHPSGGSYR 281
Score = 60 (26.2 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 45/158 (28%), Positives = 61/158 (38%)
Query: 152 RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-- 209
R GG + SR GH G+S N SSSR G V G P +S KRS
Sbjct: 110 RGGRGSGGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAP 166
Query: 210 ---IRHDHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKR 254
+R + R+ +G RRE SRR + + S +D Y RD
Sbjct: 167 SGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY-- 224
Query: 255 PKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
P ++ Y +D D S+ R D S + +R
Sbjct: 225 PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 262
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/138 (26%), Positives = 50/138 (36%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 253 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 311
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRHESESYLREDQ 268
R+ +G D S SD R R R + P +S S
Sbjct: 312 YSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGA 370
Query: 269 DR---RGGDKSSTGRGDS 283
R RGG +S G G S
Sbjct: 371 PRGGGRGGSRSDRGGGRS 388
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 157 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 206
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 266
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 267 GRDRDYSDHPSGGSYR 282
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
Score = 56 (24.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 254 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 312
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ---DRR 271
R+ +G D S SD + R+ R+D P E D R
Sbjct: 313 YSSSRDGYGGSRDSYSSSRSD---LYSSGRDRVGRQDRGLPPSMERGYPPPRDSYSSSSR 369
Query: 272 GGDKSSTGRGDSSSHR 287
G + GRG S S R
Sbjct: 370 GAPRGG-GRGGSRSDR 384
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 157 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 206
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 266
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 267 GRDRDYSDHPSGGSYR 282
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/138 (26%), Positives = 50/138 (36%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 254 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 312
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRHESESYLREDQ 268
R+ +G D S SD R R R + P +S S
Sbjct: 313 YSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGA 371
Query: 269 DR---RGGDKSSTGRGDS 283
R RGG +S G G S
Sbjct: 372 PRGGGRGGSRSDRGGGRS 389
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 157 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 206
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 266
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 267 GRDRDYSDHPSGGSYR 282
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/138 (26%), Positives = 50/138 (36%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 254 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 312
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRHESESYLREDQ 268
R+ +G D S SD R R R + P +S S
Sbjct: 313 YSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGA 371
Query: 269 DR---RGGDKSSTGRGDS 283
R RGG +S G G S
Sbjct: 372 PRGGGRGGSRSDRGGGRS 389
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 157 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 206
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 266
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 267 GRDRDYSDHPSGGSYR 282
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/138 (26%), Positives = 50/138 (36%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 254 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 312
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRHESESYLREDQ 268
R+ +G D S SD R R R + P +S S
Sbjct: 313 YSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGA 371
Query: 269 DR---RGGDKSSTGRGDS 283
R RGG +S G G S
Sbjct: 372 PRGGGRGGSRSDRGGGRS 389
Score = 52 (23.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 43/152 (28%), Positives = 59/152 (38%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + S GH G+S N SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSHGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 50/136 (36%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S G G G P RRE S R D
Sbjct: 157 SGGPPPKRSAPSGPVRSSSGLGGRAPVSRGRDGYG-----GPP----RREPLPS-RRDVY 206
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 207 LSPRDDGYSTKDSYSSREYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 266
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 267 GRDRDYSDHPSGGSYR 282
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/138 (26%), Positives = 50/138 (36%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 254 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 312
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRHESESYLREDQ 268
R+ +G D S SD R R R + P +S S
Sbjct: 313 YSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGA 371
Query: 269 DR---RGGDKSSTGRGDS 283
R RGG +S G G S
Sbjct: 372 PRGGGRGGSRSDRGGGRS 389
Score = 52 (23.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 42/151 (27%), Positives = 58/151 (38%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFTMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYRRDEKRPKRHESE 261
+ R+ +G RRE SRR + + S +D Y E P ++
Sbjct: 174 SSGLGGRAPVSRGRDGYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSREY-PSSRDTR 232
Query: 262 SYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 233 DYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 71 NGKSLDGKAIKVE 83
Score = 62 (26.9 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 158 SGGPPPKRSAPSGPVRSSSGMGGRAPVSR-----GRDSYGGPP----RREPLPS-RRDVY 207
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 208 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY 267
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 268 GRDRDYSDHPSGGSYR 283
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 118 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 174
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 175 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 232
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 233 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 264
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/138 (26%), Positives = 50/138 (36%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ ++ S + GS R + E GN P + S R+D
Sbjct: 255 DYPSR-GYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 313
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRHESESYLREDQ 268
R+ +G D S SD R R R + P +S S
Sbjct: 314 YSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGA 372
Query: 269 DR---RGGDKSSTGRGDS 283
R RGG +S G G S
Sbjct: 373 PRGGGRGGSRSDRGGGRS 390
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 126 (49.4 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 64 (27.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 154 SGGPPPKRSTPSGPVRSSSGMGGRTPVSR-----GRDSYGGPP----RREPLPS-RRDVY 203
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 204 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGY 263
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 264 GRDREYSDHPSGGSYR 279
Score = 55 (24.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 36/148 (24%), Positives = 49/148 (33%)
Query: 146 FSHNEQRAANTGGGPQDRSSRWGHEKFEGF-SWGKNDSSSRATGSGRVALEGNPNQSDRR 204
+SH+ R G DR ++ S G S + G+ R A P +
Sbjct: 243 YSHSSSRDDYPSRGYGDRDGYGRDREYSDHPSGGSYRDSYESYGNSRSA---PPTRGPPP 299
Query: 205 EEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRR------DEKRPKRH 258
S R+D R+ +G D S SD R R R + P
Sbjct: 300 SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYS-SGRDRVGRQERGLPPSMERGYPPPR 358
Query: 259 ESESYLREDQDR---RGGDKSSTGRGDS 283
+S S R RGG +S G G S
Sbjct: 359 DSYSSSSRGAPRGGGRGGSRSDRGGGRS 386
Score = 55 (24.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 45/161 (27%), Positives = 60/161 (37%)
Query: 147 SHNEQRAANTG-GGPQDRSSRWGHEKFEGFSWGKNDSSSRA---TGSGRVALEGNP--NQ 200
S R G GG + SR G+ G+S N SSSR G G P +
Sbjct: 102 SRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKR 161
Query: 201 SDRREEKRSIRHDHREKP----REDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RD 251
S RS P R+ +G RRE SRR + + S +D Y RD
Sbjct: 162 STPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRD 221
Query: 252 EKRPKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
P ++ Y +D D S S+ R D S + +R
Sbjct: 222 Y--PSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDR 260
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 151 (58.2 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 70/263 (26%), Positives = 107/263 (40%)
Query: 38 VYVGGIPFDLTEGD-LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NL 91
VYVG + T D LL F Q GE+ V + D+ +P FAFV + DQ +
Sbjct: 170 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRALAF 227
Query: 92 NGAQILGRTIR-VDH-VAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHN 149
NG R ++ V+H + G+ F+ E T G S +
Sbjct: 228 NGVMFGDRPLKFVNHSIKQSDFVQLTEVVHSTCARLLTGI---FKCSELTLQSGFFLSES 284
Query: 150 EQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS 209
+ + GG + RS H + E S K+ S + + S + GN + S ++ +RS
Sbjct: 285 GKSSERKGG--RSRS----HSRSESRSSSKSRSRRKRSHSKHRSRSGNRSLSRHKDRRRS 338
Query: 210 IRHDHREKPREDHGRREDKRSRRHSDNNEFEA-RSREDHYRRDEKRPKRHESESYLREDQ 268
R +++ R R+ RSR E + + RE RD+K+ K S + R
Sbjct: 339 -RSPLKKRSRSRERRKSRSRSRSREKEKEKDGDKEREREKERDDKKKKDKRSRTPPRS-- 395
Query: 269 DRRGGDKSSTGRGDSSSHRHRER 291
SS+ R SSS R+R
Sbjct: 396 ------YSSSRRSRSSSRERRKR 412
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 126 (49.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L VF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 64 (27.6 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 47/165 (28%), Positives = 63/165 (38%)
Query: 135 RGECTRG---DGCKFSHNEQRAANTGG-----GPQDRSSRWGHEKF--EGFSWGKNDSSS 184
RG +RG D +S N +++ G GP RS ++ G +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGG 179
Query: 185 RATGS-GRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARS 243
RA S GR + G P RRE S R D PR+D +D S R ++ R
Sbjct: 180 RAPLSRGRDSYGGPP----RREPLPS-RRDVYLSPRDDGYSTKDSYSSRDYPSS----RD 230
Query: 244 REDHYRRDEKRPKRHESESYLREDQDRRG-GDKSSTGRG-DSSSH 286
D+ R S R+D RG GD+ GR D S H
Sbjct: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDH 275
Score = 57 (25.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 44/152 (28%), Positives = 60/152 (39%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S N SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFNMSSSR--GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDR 263
Score = 42 (19.8 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 24/93 (25%), Positives = 35/93 (37%)
Query: 146 FSHNEQRAANTGGGPQDRSSRWGHEK--FEGFSWGKNDSSSRATGSGRVA-LEGNPNQSD 202
+ H+ R G DR +G ++ + S G S + G+ R A L P S
Sbjct: 246 YGHSSSRDDYPSRGYGDRDG-YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPS- 303
Query: 203 RREEKRSIRHDHREKPREDHGRREDKRSRRHSD 235
S R+D R+ +G D S SD
Sbjct: 304 ---YGGSSRYDDYSSSRDGYGGSRDSYSSSRSD 333
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 147 (56.8 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 54/178 (30%), Positives = 77/178 (43%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXX-----GVCRAFQRGECTRG- 141
+NG + GR IRVD G R F RG RG
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGY 123
Query: 142 DGCKFSHNEQRAANTGGGPQDRSSR---WGH-EKFEGFSWGKN-DSSSRATGSGRVAL 194
G +F E R+ GG SSR G+ ++ G S+ + DS ++ G L
Sbjct: 124 GGNRF---ESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSYGKSHSEGATLL 178
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 128 (50.1 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 128 (50.1 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY----EDQRN--NL 91
+++GG+ F TE L F++CG++V+ +V D+ + + +GF FV + E Q+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 92 NGAQILGRTIRVDH 105
NG Q+ GRTI VD+
Sbjct: 96 NGQQLNGRTIFVDY 109
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 126 (49.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 62 (26.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 36/136 (26%), Positives = 51/136 (37%)
Query: 156 TGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHR 215
+GG P RS+ G + G+ S GR + G P RRE S R D
Sbjct: 154 SGGPPPKRSTPSGPVRSSSGMGGRMPVSR-----GRDSYGGPP----RREPLPS-RRDVY 203
Query: 216 EKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
PR+D +D S R D ++ R+ YR R + S D+D
Sbjct: 204 LSPRDDGYSTKDSYSSRDYLSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGY 263
Query: 272 GGDKSSTGRGDSSSHR 287
G D+ + S+R
Sbjct: 264 GRDREYSDHPSGGSYR 279
Score = 50 (22.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/137 (26%), Positives = 49/137 (35%)
Query: 162 DRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALE--GN-----PNQSDRREEKRSIRHDH 214
D SR G+ +G+ + S + GS R + E GN P + S R+D
Sbjct: 251 DYPSR-GYGDRDGYGRDREYSDHPSGGSYRDSYESYGNSCSAPPTRGPPPSYGGSSRYDD 309
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR--PKRHESESYLRE--DQDR 270
R+ +G D S SD S D R E+ P R+
Sbjct: 310 YSSSRDGYGGSRDSYSSSRSDLYS----SDRDRVGRQERGLPPSMERGYPPPRDFYSSSS 365
Query: 271 RGGDKSSTGRGDSSSHR 287
RG + GRG S S R
Sbjct: 366 RGAPRGG-GRGGSRSDR 381
Score = 50 (22.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 43/160 (26%), Positives = 59/160 (36%)
Query: 147 SHNEQRAANTG-GGPQDRSSRWGHEKFEGFSWGKNDSSSRA---TGSGRVALEGNP--NQ 200
S R G GG + SR G+ G+S N SSSR G G P +
Sbjct: 102 SRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKR 161
Query: 201 SDRREEKRSIRHDHREKP----REDHG---RREDKRSRRHSD-NNEFEARSREDHYRRDE 252
S RS P R+ +G RRE SRR + + S +D Y +
Sbjct: 162 STPSGPVRSSSGMGGRMPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRD 221
Query: 253 KRPKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
R ++ Y +D D S S+ R D S + +R
Sbjct: 222 YLSSR-DTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDR 260
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 149 (57.5 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RNNL 91
V+VG IP+D TE L + + G +V LV D+ TGKP+G+ F Y+D+ R NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 92 NGAQILGRTIRVD 104
+I GR +RVD
Sbjct: 71 QSYEINGRQLRVD 83
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 126 (49.4 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY--EDQRNN-- 90
S+ ++VGG+ + + L F GE+ + ++ D+ TG+ RGF FV++ ED NN
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 91 --LNGAQILGRTIRVD 104
++G ++ GR IRV+
Sbjct: 94 KEMDGKELNGRQIRVN 109
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 107 (42.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY------EDQR 88
S VY+G + F TE L +F++ GEI + + DK T P GF FV + ED
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 89 NNLNGAQILGRTIRVD 104
++G + R IRVD
Sbjct: 93 KYISGTILDDRPIRVD 108
Score = 75 (31.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 188 GSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDH 247
G+GR GN Q + R H R++ + +GR D SRR++D+ E+R D
Sbjct: 177 GNGRRG-GGNYGQGGQNRHGRGDYHRKRQRDDDRYGR--DN-SRRNTDH---ESRRDTDS 229
Query: 248 YRRDEKRPKRHESESYLREDQDRR 271
R EK P+ ES + +D R
Sbjct: 230 DMRPEKNPRFRESGDSDDDGEDDR 253
Score = 60 (26.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 18/94 (19%), Positives = 39/94 (41%)
Query: 157 GGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHRE 216
G PQ + +G+ + G ++G+ + G + + ++ R +R+ H+ R
Sbjct: 166 GAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRR 225
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRR 250
D ++ R R D+++ +D RR
Sbjct: 226 DTDSDMRPEKNPRFRESGDSDD---DGEDDRKRR 256
Score = 38 (18.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 273 GDKSSTGRGDSSSHRHRER 291
G ++ GRGD HR R+R
Sbjct: 189 GGQNRHGRGDY--HRKRQR 205
>TAIR|locus:2024852 [details] [associations]
symbol:CYP59 "cyclophilin 59" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006457 "protein
folding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0005829
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0652
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735 OMA:DRTQNRS
HSSP:Q27450 EMBL:AY568526 IPI:IPI00547571 RefSeq:NP_175776.2
UniGene:At.37348 SMR:Q6Q151 IntAct:Q6Q151 STRING:Q6Q151
EnsemblPlants:AT1G53720.1 GeneID:841810 KEGG:ath:AT1G53720
TAIR:At1g53720 InParanoid:Q6Q151 ProtClustDB:CLSN2690463
Genevestigator:Q6Q151 Uniprot:Q6Q151
Length = 506
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 71/261 (27%), Positives = 108/261 (41%)
Query: 47 LTEG-DLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR 99
+TE DL +F++ G +V +++RD TG +AF+ +E++ + ++ A I R
Sbjct: 253 VTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDR 312
Query: 100 TIRVDHVAXXXXXXXXXXXXXXXXXXXXGV--CRAFQR--GECTRGDGCKFSHNEQRAAN 155
I VD G C + +C G KF +Q +
Sbjct: 313 RIHVDFSQSVSKLWSQFRQKDSQKGKGNGCFKCGSTDHIAKDCVGGPSSKFIVKDQNRQH 372
Query: 156 TGGGPQDRSSRWGHEK-FEG--FSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRH 212
GGG G+E FEG K++S R S ++ +P+ + E KR R
Sbjct: 373 -GGGE-------GYEMVFEGDVHETPKHNSHERER-SEKIQRR-SPHGNG--EGKRQHR- 419
Query: 213 DHREKPREDHGRREDKRS--RRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDR 270
D R+ R H R ED R R+H + E E+R ED RR +R + + ES D+D
Sbjct: 420 DERDDGRRQHDR-EDARELERKHRERKERESREDEDRRRR-RRREESRDKESRRERDEDD 477
Query: 271 RGGDKSSTGRGDSSSHRH-RE 290
+ R RH RE
Sbjct: 478 HRSHRDYKERRRERDDRHGRE 498
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 94 (38.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 38/110 (34%), Positives = 45/110 (40%)
Query: 183 SSRATGSGRVALEGNPNQSDRREEKRSIRHDHREK----PREDHGRREDKRSRRHSDNNE 238
SSR S R DRR RS +D R + PRE GR +RSR H D +
Sbjct: 106 SSRYEDSDR-RRRSRSRSYDRRRS-RSPSYDRRRRRSDSPRESRGRTHSRRSREH-DRHR 162
Query: 239 FEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRH 288
R DH+R R S S R RGG + S G + SH H
Sbjct: 163 GSTR---DHHRSRTDAASRSRSPSRSRA----RGGRRESDG---ARSHTH 202
Score = 89 (36.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V I + DL F + G IVDV + D + +PRGFA++ +ED R+ NL
Sbjct: 12 LFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRV 103
+ + GR I +
Sbjct: 72 DRKWVCGRQIEI 83
Score = 79 (32.9 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 197 NPNQS-DRREEKRSIRHD-HREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
+P +S R +RS HD HR R+ H R D SR S + +R+R D R
Sbjct: 142 SPRESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPSR---SRARGGRRESDGAR 198
Query: 255 PKRHES---ESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
H + +++ + GD + +S R R R
Sbjct: 199 SHTHSASPQQNHSTAENKHSAGDDTHIHTRSASRSRSRSR 238
Score = 74 (31.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/88 (30%), Positives = 39/88 (44%)
Query: 203 RREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESES 262
R+ E + + D + + + R RS R+ D++ RSR Y R +R S S
Sbjct: 79 RQIEIQFAQGDRKTPGQMKNKERSSPRSSRYEDSDR-RRRSRSRSYDR-----RRSRSPS 132
Query: 263 YLREDQDRRGGDKSSTGRGDSSSHRHRE 290
Y D+ RR D RG + S R RE
Sbjct: 133 Y---DRRRRRSDSPRESRGRTHSRRSRE 157
Score = 72 (30.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 28/94 (29%), Positives = 41/94 (43%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEAR-SREDHY-----RRDEK 253
Q DR+ + +++ R PR R ED RR S + ++ R SR Y R D
Sbjct: 87 QGDRKTPGQ-MKNKERSSPRSS--RYEDSDRRRRSRSRSYDRRRSRSPSYDRRRRRSDSP 143
Query: 254 RPKRHESESYLREDQDR-RGGDKSS-TGRGDSSS 285
R R + S + DR RG + R D++S
Sbjct: 144 RESRGRTHSRRSREHDRHRGSTRDHHRSRTDAAS 177
Score = 69 (29.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 25/90 (27%), Positives = 38/90 (42%)
Query: 158 GGPQDRSSRWGHEKFEGFSW----GKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHD 213
G R SR H++ G + + D++SR+ R G +SD RS H
Sbjct: 148 GRTHSRRSR-EHDRHRGSTRDHHRSRTDAASRSRSPSRSRARGGRRESDGA---RS--HT 201
Query: 214 HREKPREDHGRREDKRSRRHSDNNEFEARS 243
H P+++H E+K S D+ RS
Sbjct: 202 HSASPQQNHSTAENKHSA--GDDTHIHTRS 229
Score = 59 (25.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 25/107 (23%), Positives = 44/107 (41%)
Query: 179 KNDS--SSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSD- 235
++DS SR R + E + ++ R+ RS R D + R R + RR SD
Sbjct: 139 RSDSPRESRGRTHSRRSREHDRHRGSTRDHHRS-RTDAASRSRSP-SRSRARGGRRESDG 196
Query: 236 --NNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGR 280
++ A +++H + K ++ + R R +S GR
Sbjct: 197 ARSHTHSASPQQNHSTAENKHSAGDDTHIHTRSASRSRSRSRSWAGR 243
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 113 (44.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------L 91
++VGG+ F+ E L F G I +V +V+D+ T + RGF F+ + D + +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 92 NGAQILGRTIRVDH 105
NG + GR IRVDH
Sbjct: 68 NGESLDGRQIRVDH 81
Score = 46 (21.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 139 TRGDGCKFSHNEQRAANTGGGPQ--------DRSSRWGHEKFEGFSWGKN-DSSSRATG 188
TRG G +H R+ + GGG Q R +G+ G+ +G++ D R+ G
Sbjct: 89 TRG-GAFGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGYGYGYGRSRDYGGRSQG 146
>TAIR|locus:2162107 [details] [associations]
symbol:AT5G55670 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB009050 HSSP:Q9V535 KO:K14398 OMA:GKGSAPN IPI:IPI00548235
RefSeq:NP_200378.1 UniGene:At.6556 ProteinModelPortal:Q9FM71
SMR:Q9FM71 PRIDE:Q9FM71 EnsemblPlants:AT5G55670.1 GeneID:835661
KEGG:ath:AT5G55670 TAIR:At5g55670 HOGENOM:HOG000242877
InParanoid:Q9FM71 PhylomeDB:Q9FM71 ProtClustDB:CLSN2686996
ArrayExpress:Q9FM71 Genevestigator:Q9FM71 Uniprot:Q9FM71
Length = 710
Score = 111 (44.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 201 SDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSRE-DHYRRDEKRPKRH 258
SDRR + R+ PRE D G D RRH D+ + R RE +H+ +D +R + H
Sbjct: 576 SDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRD-TGREREREHHHKDRERSREH 634
Query: 259 ESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
+ ++DR ++ G GD + RHR+
Sbjct: 635 VRDRERERERDRHREERERYG-GDHRT-RHRD 664
Score = 92 (37.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 36/125 (28%), Positives = 51/125 (40%)
Query: 174 GFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGR----REDKR 229
G + G D +S G+G G +S EE S H + E E R +E +R
Sbjct: 508 GHNMGMWDPNSGGWGAGEDLGSGRAAESSYGEEAAS-DHQYGEVNHERGARPNPVKEKER 566
Query: 230 SRRHSDNNEFEARSREDH---YRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSH 286
+ + + R+RED Y RD R K Y + +RR D TGR H
Sbjct: 567 ASEREWSGSSDRRNREDKDAGYERDIPREK-DVGHGY--DMPERRHRDDRDTGREREREH 623
Query: 287 RHRER 291
H++R
Sbjct: 624 HHKDR 628
Score = 83 (34.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 38/179 (21%), Positives = 68/179 (37%)
Query: 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RN 89
A+++VG + + T+ +L A + G + +V +K +GK +G+ V + D ++
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 90 NLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHN 149
LNG GR V++ + + +A + G ++N
Sbjct: 294 ALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQAQSVIAQAKRGGPADPPSKPLVANN 353
Query: 150 EQRAANT--GG---GPQDRS---SRWGHEKFEGFSWGKNDSS---SRATGSGRVALEGN 197
N GG G ++R WG +G G+ +R G G L GN
Sbjct: 354 NNNNNNNAIGGNFQGGENRGFGRGNWGRGNAQGMG-GRGPGGPMRNRPNGMGGRGLMGN 411
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 136 (52.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 88 RNNLNGAQILGRTIRVD 104
+NG + GR IRVD
Sbjct: 64 MMAMNGKSVDGRQIRVD 80
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 152 RAANTGGGPQDRSSRWGHEKFEGFSWGKNDS----SSRATGSG 190
R GGG DR +G +FE S G S SSR+ G
Sbjct: 78 RVDQAGGG--DRG--YGGNRFESRSGGYGGSRDYYSSRSQSGG 116
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 112 (44.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE--DQRNN----L 91
++VGG+ F+ E L F+ G I +V +V+D+ T + RGF F+ + + +N +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 92 NGAQILGRTIRVDH 105
NG + GR IRVDH
Sbjct: 68 NGESLDGRQIRVDH 81
Score = 41 (19.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 131 RAFQRGECTRGD-GCKFSHNEQRAANTGGGPQDRS-----SRWGHEKFEGFSWGKN-DSS 183
R G+ RG G F R + GGG Q SR G + G+ +G++ D
Sbjct: 78 RVDHAGKSARGTRGGAFGARG-RGYSRGGGDQGYGNGRYDSRPGGYGY-GYGYGRSRDYG 135
Query: 184 SRATGS 189
SR+ GS
Sbjct: 136 SRSQGS 141
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 112 (44.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE 85
DS VYV +P ++ + VF +CG +V V++ R K TG P+GFAFV +E
Sbjct: 125 DSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFE 176
Score = 79 (32.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
Q +RE+++ R + E P E R KR R S + E + ++DE P + E
Sbjct: 289 QLSKREKRKWDRSESSEVPVES---RPGKRKRSSSGDGETSVAKVKKTVQKDEVHPVKEE 345
Query: 260 SESYLRED-----QDRRGGDKSSTGRGDSS-SHR--HRER 291
+ ++ +D + GDK T S H+ H+ER
Sbjct: 346 TTEAPKDSNEVPLEDDKDGDKKDTSLSKSKRKHKKKHKER 385
Score = 59 (25.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 229 RSRRHSDNNEFEARSREDHYRRDEKRPKRH--ESESYLREDQDRRGGDK-SSTGRGDSS 284
+S+RH ++E + +R+ KR KR SES + R G K SS+G G++S
Sbjct: 268 KSKRHRTSSECSEMGGTEVHRQLSKREKRKWDRSESSEVPVESRPGKRKRSSSGDGETS 326
Score = 57 (25.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 22/84 (26%), Positives = 30/84 (35%)
Query: 178 GKNDSSSRATGSGRVALEGNPNQSDR----REEKRSIRHDHREKPREDHGRREDKRSRRH 233
GK SS G VA Q D +EE D E P ED + K +
Sbjct: 313 GKRKRSSSGDGETSVAKVKKTVQKDEVHPVKEETTEAPKDSNEVPLEDDKDGDKKDTSLS 372
Query: 234 SDNNEFEARSREDHYRRDEKRPKR 257
+ + + +E H +E P R
Sbjct: 373 KSKRKHKKKHKERHKMGEEVIPLR 396
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 103 (41.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 39/168 (23%), Positives = 65/168 (38%)
Query: 128 GVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRAT 187
G R+ R + +R S ++ + +RS ++ S K S SR
Sbjct: 190 GRSRSHTRSK-SRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRER 248
Query: 188 GSGRVALEGNPNQSDRRE---EKRSIRHDHREKPREDHGRREDKRSR-RHSDNNEFEARS 243
R + D RE EK ++ REK RE RE ++ R ++ D ++ +
Sbjct: 249 RKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKD 308
Query: 244 REDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
RE +D +R + E E R+ + + DK D S +R
Sbjct: 309 REKDKEKDREREREKEHEKD-RDKEKEKEQDKEKEREKDRSKEIDEKR 355
Score = 89 (36.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ +R +EK ++ R+K RE R +DK R + + + R+ +++ + K E
Sbjct: 286 EKEREKEKERGKNKDRDKEREKD-REKDKEKDREREREKEHEKDRDKEKEKEQDKEKERE 344
Query: 260 SESYLREDQDRRGGDKSSTG-RGDSSSHRHR 289
+ D+ R+ KS T R ++S R R
Sbjct: 345 KDRSKEIDEKRKKDKKSRTPPRSYNASRRSR 375
Score = 87 (35.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGD-LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NL 91
VYVG + T D LL F Q GE+ V + D+ +P FAFV + DQ +
Sbjct: 68 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRALAF 125
Query: 92 NGAQILGRTIRVDH 105
NG R ++++H
Sbjct: 126 NGVMFGDRPLKINH 139
Score = 86 (35.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 193 ALEGNPNQSDRREEKRSIRHDHREKPR---EDHGRREDKRSRRHSDNNEFEARSREDHYR 249
A+E +S+ R+ RS H R K R + H RR+ +S+ H + +RSR+ R
Sbjct: 176 AIEPESGKSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSK-HRSRSHNRSRSRQKDRR 233
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSH-RHRER 291
R K P + S+S RE + R S R D+ + +ER
Sbjct: 234 RS-KSPHKKRSKS--RERRKSRSRSHSRDKRKDTREKIKEKER 273
Score = 85 (35.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 202 DRREEKRSIRHDHREKPRE---DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 258
D+ +EK + REK R D R++DK+SR + RSR R +R R
Sbjct: 330 DKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRR-SRS 388
Query: 259 ESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S S +R +S + R + + RE+
Sbjct: 389 SSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREK 421
Score = 78 (32.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 182 SSSRATGSGRVALEGNPNQSDRREEKRS-IRHDHREKPRE-DHGRREDKRSRRHSDNNEF 239
S+ R G R S + +R + HR + R++D+R +
Sbjct: 184 SNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRS 243
Query: 240 EARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++R R R R KR ++ ++E + + D+ + + +ER
Sbjct: 244 KSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKER 295
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ DR ++K R REK E R ++K + + + RS+E +R + + R
Sbjct: 306 EKDREKDKEKDREREREKEHEKD-RDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTP 364
Query: 260 SESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
SY + R + R SSS R
Sbjct: 365 PRSYNASRRSRSSSRERRRRRSRSSSRSPR 394
Score = 75 (31.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/96 (25%), Positives = 39/96 (40%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRRE-DKRSRRHSDNN-EFEARSREDHYRRDEKRPKR 257
+ D+ +++ R EK R+ +E DK R D + E + + ++D R R
Sbjct: 310 EKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYN 369
Query: 258 --HESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S S RE + RR S + R + R R
Sbjct: 370 ASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSR 405
Score = 69 (29.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 31/100 (31%), Positives = 43/100 (43%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHG-RREDKRSRR-HSDN 236
K D SR A + + S R +RS R R PR +R+ RS S N
Sbjct: 356 KKDKKSRTPPRSYNASRRSRSSSRERRRRRS-RSSSRS-PRTSKTIKRKSSRSPSPRSRN 413
Query: 237 NEFEARSRE-DHYRRDEKRPKRHESESYLREDQDRRGGDK 275
+ + R +E DH E+R +R S S + DR G +K
Sbjct: 414 KKDKKREKERDHI--SERR-ERERSTSMRKSSNDRDGKEK 450
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 99 (39.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + D DL F + G IVDV + D T +PRGFA+V +ED R+ NL
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRV 103
+ I GR I +
Sbjct: 72 DRKWICGRQIEI 83
Score = 70 (29.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 178 GKND-SSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREK--PREDHGRREDKRSRRHS 234
G+N SSSR R + + RR RS +++R PR +RSR HS
Sbjct: 101 GRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHS 160
Query: 235 DNN 237
DN+
Sbjct: 161 DND 163
Score = 66 (28.3 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 25/77 (32%), Positives = 34/77 (44%)
Query: 198 PNQSDRREEKR---SIRHDHREKPREDHGRR-EDKRSRRHSDNNEFEARSREDHYRRDEK 253
PNQ +E + S R+D ++ R R E +RSR S + + RS R
Sbjct: 93 PNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYR-RSYSPRNSRPTG 151
Query: 254 RPKRHESESYLREDQDR 270
RP+R S S D DR
Sbjct: 152 RPRRSRSHS----DNDR 164
>UNIPROTKB|G4N9S1 [details] [associations]
symbol:MGG_10681 "Peptidyl-prolyl cis-trans isomerase-like
4" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581
EMBL:CM001234 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 KO:K12735
RefSeq:XP_003715897.1 EnsemblFungi:MGG_10681T0 GeneID:2682882
KEGG:mgr:MGG_10681 Uniprot:G4N9S1
Length = 505
Score = 111 (44.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 47/143 (32%), Positives = 60/143 (41%)
Query: 150 EQRAANTGG-GPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRRE-EK 207
+Q A GG G D +W K+ G++D R G V G R E +K
Sbjct: 353 KQAAKGRGGWGGVDELEKW--RKYREDD-GRDD---RPDSYGMVY--GKEEMQGRHERQK 404
Query: 208 RSIRHDHREKPREDHGRRE--DKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
HD EKPRE G R D+R R SD+ RSR RR+ R R R
Sbjct: 405 AGPGHD-AEKPREGGGDRNGYDQRRDRASDSRR---RSRSRSPRRERHRDSRDGRRRDDR 460
Query: 266 EDQDRRGGDKSSTGRGDSSSHRH 288
+ +RGG++S R D RH
Sbjct: 461 DSGSKRGGERSRHDR-DRGQERH 482
Score = 91 (37.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 34/115 (29%), Positives = 50/115 (43%)
Query: 159 GPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQ-SDRREEKRSIRHDHREK 217
G ++ R HE+ + G + R G R + ++ SD R RS R RE+
Sbjct: 392 GKEEMQGR--HERQKAGP-GHDAEKPREGGGDRNGYDQRRDRASDSRRRSRS-RSPRRER 447
Query: 218 PREDH-GRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRR 271
R+ GRR D R E RSR D R E+ + ++ + R D+DRR
Sbjct: 448 HRDSRDGRRRDDRDSGSKRGGE---RSRHDRDRGQERHNRGNDYDRDRRRDRDRR 499
Score = 88 (36.0 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 29/111 (26%), Positives = 47/111 (42%)
Query: 148 HNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEK 207
H Q+A G G R G G+ ++ RA+ S R + +P + R+ +
Sbjct: 400 HERQKA---GPGHDAEKPREGGGDRNGYDQRRD----RASDSRRRSRSRSPRRERHRDSR 452
Query: 208 RSIRHDHREKPREDHGRRE----DKRSRRHSDNNEFEARSREDHYRRDEKR 254
R D R+ + G R D+ RH+ N+++ R D RRD+ R
Sbjct: 453 DGRRRDDRDSGSKRGGERSRHDRDRGQERHNRGNDYDRDRRRDRDRRDDYR 503
Score = 77 (32.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102
+ DL +F++ G+I+ ++RD TG +AF+ +ED+ + G I R I
Sbjct: 270 DADLELIFSRFGKILSCEVIRDSKTGDSLQYAFIEFEDKAACETAYFKMQGVLIDDRRIH 329
Query: 103 VD 104
VD
Sbjct: 330 VD 331
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLN 92
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + N
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/153 (27%), Positives = 68/153 (44%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY------EDQRNNL 91
++VGG+ F+ E L F+ G I +V +V+D+ T + RGF F+ + D +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
NG + GR IRVDH G R++ RG +G G +
Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGGAFGAH------GRGRSYSRGGGDQGYGS--GRYDS 119
Query: 152 RAANTG---GGPQDRS-SRWGHEKFEGFSWGKN 180
R G G +D S S+ G++++ G ++ N
Sbjct: 120 RPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDN 152
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------R 88
S+ +++GG+ + + E L F+ GE+ +V + DKG+G+ RGF FV + ++ +
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 89 NNLNGAQILGRTIRV 103
+ ++G +LGR +R+
Sbjct: 100 DAMDGKGLLGRPLRI 114
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 97 (39.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 35/125 (28%), Positives = 54/125 (43%)
Query: 178 GKN-DSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREK--PREDHGRREDKRSRRHS 234
G+N SSSR R + + RR RS + +R PR +RSR HS
Sbjct: 101 GRNLYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYSYRRSYSPRNSRPTGRPRRSRSHS 160
Query: 235 DNNEFE------ARSREDHYRRDEKRPKRH---ESESYLREDQDRRGGDKSSTGRGDSSS 285
DN+ F+ +RS+ + R + +PK+ +S S RG K+ + SS
Sbjct: 161 DNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKSRGTSKTDSKTHYKSS 220
Query: 286 HRHRE 290
R+ +
Sbjct: 221 SRYEK 225
Score = 83 (34.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY------EDQRNNL 91
++V + D DL F + G IVDV + D T +PRGFA+ ED +NL
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRV 103
+ I GR I +
Sbjct: 72 DRKWICGRQIEI 83
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 131 (51.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D L
Sbjct: 15 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 74
Query: 92 NGAQILGRTIRVDHV 106
NG ++ GR +RV HV
Sbjct: 75 NGFELAGRPMRVGHV 89
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 128 (50.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKSLDGKAIKVE 82
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 36/148 (24%), Positives = 51/148 (34%)
Query: 146 FSHNEQRAANTGGGPQDRSSRWGHEK--FEGFSWGKNDSSSRATGSGRVALEGNPNQSDR 203
+ H+ R G DR +G E+ + S G S + G+ R A P +
Sbjct: 246 YGHSSSRDDYPSRGYSDRDG-YGRERDYSDHPSGGSYRDSYESYGNSRSA---PPTRGPP 301
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR--PKRHESE 261
S R+D R+ +G D + SD S D R E+ P
Sbjct: 302 PSYGGSSRYDDYSSSRDGYGGSRDSYTSSRSDLYS----SGRDRVGRQERGLPPSMERGY 357
Query: 262 SYLRED--QDRRGGDKSSTGRGDSSSHR 287
R+ RG + GRG S S R
Sbjct: 358 PPPRDSYSSSSRGAPRGG-GRGGSRSDR 384
Score = 49 (22.3 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 43/152 (28%), Positives = 59/152 (38%)
Query: 158 GGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS-----IRH 212
GG + SR GH G+S SSSR G V G P +S KRS +R
Sbjct: 117 GGTRGPPSRGGHMDDGGYSMNFTLSSSR--GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
Query: 213 DHR-------EKPREDHG---RREDKRSRRHSD-NNEFEARSREDHYR-RDEKRPKRHES 260
+ R+ +G RRE SRR + + S +D Y RD P ++
Sbjct: 174 SSGMGGRAPVSRGRDGYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDT 231
Query: 261 ESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
Y +D D S+ R D S + +R
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR 263
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 121 (47.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 42/154 (27%), Positives = 67/154 (43%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY------EDQRNNL 91
++VGG+ F+ E L F+ G I +V +V+D+ T + RGF F+ + D +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
NG + GR IRVDH G R++ RG +G G +
Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGGAFGAH------GRGRSYSRGGGDQGYGS--GRYDS 119
Query: 152 RAANTG---GGPQDRSSR--WGHEKFEGFSWGKN 180
R G G +D S R G++++ G ++ N
Sbjct: 120 RPGGYGYGYGRSRDYSGRSQGGYDRYSGGNYRDN 153
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 78/270 (28%), Positives = 105/270 (38%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGEC---TRGDGCKFSH 148
NG + G+ I+V+ A G R + G RG + SH
Sbjct: 70 NGKSLDGKAIKVEQ-ATKPSFESGGRRGPPPPPRSRGPPRGLRGGRGGSGARGPPSRGSH 128
Query: 149 --NEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSS---RATGS-GRVALEGNPNQSD 202
+ + GP RS G G SSS RA S GR + G P
Sbjct: 129 LGSSRGPLPMKRGPPPRSG--GPPPKRSAPSGPVRSSSMGGRAPVSRGRDSYGGPP---- 182
Query: 203 RREEKRSIRHDHREKPREDHGRREDKRSRRH----SDNNEFEARSREDHYRRDEKRPKRH 258
RRE S R D PR+D +D S R D ++ R+ YR R
Sbjct: 183 RREPMPS-RRDVYMSPRDDGYSTKDGYSSRDYPSSRDTRDYAPPPRDYAYRDYGHSSSRD 241
Query: 259 E--SESYLREDQDRRGGDKSSTGRGDSSSH 286
E S Y R G R D S H
Sbjct: 242 EYPSRGYSLSSYSDRDGYGGGRDR-DYSDH 270
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 137 (53.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 64/250 (25%), Positives = 96/250 (38%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VYVG + +G+L F+ G + V + R+ P GFAFV YED R+ +
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVWVARN-----PPGFAFVEYEDARDAEDAVKGM 70
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRG--DGCKFSHN 149
+G + G +RV+ ++ C +Q GE D +FS
Sbjct: 71 DGKVLCGARVRVE-LSNGMSRKSRYGRPSRRQFDPNDRC--YQCGETGHYAYDCYRFSKR 127
Query: 150 EQRAANTGGGPQDRS--------SRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQS 201
R + +G + RS SR ++ S+ K S S + G R G ++S
Sbjct: 128 RSRRSRSGSRSRSRSRGRRYRSRSRSNERRYRSPSYSKRRSRSGSPGRSRSRSPGGRSRS 187
Query: 202 DRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESE 261
R K +R P H D RSR S + + R R R R H+ +
Sbjct: 188 PVRRSKSPVRRSRSRTPL--H---RDSRSRSRSRSGSRQ-RDRSVSRSRSRSRSISHKKD 241
Query: 262 SYLREDQDRR 271
S+ R RR
Sbjct: 242 SHSRSASPRR 251
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 134 (52.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY--EDQRNN----L 91
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + +D N +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 92 NGAQILGRTIR 102
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 141 (54.7 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVA 83
D S H+K+ ++VG +P+D++E L F +CG I V LVRD+ +G +GF +V
Sbjct: 240 DRVSQHSKHDHKRSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVL 299
Query: 84 YEDQRN-----NLNGAQILGRTIRV 103
+E + LNG+ + R IRV
Sbjct: 300 FESPDSVMLALKLNGSTLQQRKIRV 324
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 120 (47.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV---AYEDQR--NNLN 92
+YVG +P+ E + +FA+ GE+ V L++DK TGK RGF FV A + Q + LN
Sbjct: 66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALN 125
Query: 93 GAQILGRTIRV 103
+ + RT++V
Sbjct: 126 EKEYMQRTLKV 136
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 120 (47.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV---AYEDQR--NNLN 92
+YVG +P+ E + +FA+ GE+ V L++DK TGK RGF FV A + Q + LN
Sbjct: 66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALN 125
Query: 93 GAQILGRTIRV 103
+ + RT++V
Sbjct: 126 EKEYMQRTLKV 136
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 120 (47.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 42/153 (27%), Positives = 68/153 (44%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY------EDQRNNL 91
++VGG+ F+ E L F+ G I +V +V+D+ T + RGF F+ + D +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
NG + GR IRVDH G R++ RG +G G +
Sbjct: 68 NGESLDGRQIRVDHAGKSARGSRGGAFG--------GRGRSYSRGGGDQGYGS--GRYDS 117
Query: 152 RAANTG---GGPQDRS-SRWGHEKFEGFSWGKN 180
R G G +D S S+ G++++ G ++ N
Sbjct: 118 RPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDN 150
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 99 (39.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/125 (20%), Positives = 57/125 (45%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
S + Q+ P + S+ E+ + S ++ + T ++ + + DR +E
Sbjct: 225 SRSRQKDRRRSKSPHKKRSK-SRERRKSRSRSRSRDKRKDTRE-KIKEKERVKEKDREKE 282
Query: 207 KRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
+ R +E+ +E + G+ +DK + D ++ + R RE D++R K E E
Sbjct: 283 REKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKE 342
Query: 266 EDQDR 270
+++D+
Sbjct: 343 KERDK 347
Score = 89 (36.4 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 32/103 (31%), Positives = 50/103 (48%)
Query: 193 ALEGNPNQSDRREEKRSIRHDHREKPR---EDHGRREDKRSRRHSDNNEFEARSREDHYR 249
A+E +S+ R+ RS H R K R + H RR+ +S+ H + +RSR+ R
Sbjct: 176 AIEPESGKSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSK-HRSRSHNRSRSRQKDRR 233
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSH-RHRER 291
R K P + S+S RE + R +S R D+ + +ER
Sbjct: 234 RS-KSPHKKRSKS--RERRKSRSRSRSRDKRKDTREKIKEKER 273
Score = 87 (35.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGD-LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NL 91
VYVG + T D LL F Q GE+ V + D+ +P FAFV + DQ +
Sbjct: 68 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRALAF 125
Query: 92 NGAQILGRTIRVDH 105
NG R ++++H
Sbjct: 126 NGVMFGDRPLKINH 139
Score = 83 (34.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 25/95 (26%), Positives = 41/95 (43%)
Query: 200 QSDRREEKRSIRHDHREKPRE---DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK 256
+ D+ +EK + R+K R D R++DK+SR + RSR R +R
Sbjct: 330 ERDKEKEKEQDKEKERDKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRR-S 388
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R S S +R +S + R + + RE+
Sbjct: 389 RSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREK 423
Score = 81 (33.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 30/98 (30%), Positives = 47/98 (47%)
Query: 200 QSDRREEK-RSIRHD-HREKPRE-DHGR-REDKRSRRHSDNNEFEARSREDHYR-RDEKR 254
+ +R +EK R D REK R+ D + RE +R + H + E +D + RD+ R
Sbjct: 290 EKEREKEKERGKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKEKERDKDR 349
Query: 255 PKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
K E + ++D+ R +S + R SS R R R
Sbjct: 350 SK--EIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRR 385
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 182 SSSRATGSGRVALEGNPNQSDRREEKRS-IRHDHREKPRE-DHGRREDKRSRRHSDNNEF 239
S+ R G R S + +R + HR + R++D+R +
Sbjct: 184 SNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRS 243
Query: 240 EARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++R R R R KR ++ ++E + + D+ + + RE+
Sbjct: 244 KSRERRKSRSRSRSRDKRKDTREKIKEKERVKEKDREKEREKERDREKEREK 295
Score = 75 (31.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNN-EFEARSREDHYRRDEKRPKR--HES 260
RE +R HD +E+ +E + +DK R D + E + + ++D R R S
Sbjct: 319 RERERDKEHD-KERDKEKE-KEQDKEKERDKDRSKEIDEKRKKDKKSRTPPRSYNASRRS 376
Query: 261 ESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S RE + RR S + R + R R
Sbjct: 377 RSSSRERRRRRSRSSSRSPRTSKTIKRKSSR 407
Score = 75 (31.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/97 (22%), Positives = 40/97 (41%)
Query: 196 GNPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEF--EARSREDHYRRDE 252
G +R +++ + RE+ R+ +H + DK + D + + RS+E +R +
Sbjct: 300 GKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKEKERDKDRSKEIDEKRKK 359
Query: 253 KRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
+ R SY + R + R SSS R
Sbjct: 360 DKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPR 396
Score = 69 (29.3 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 31/100 (31%), Positives = 43/100 (43%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHG-RREDKRSRR-HSDN 236
K D SR A + + S R +RS R R PR +R+ RS S N
Sbjct: 358 KKDKKSRTPPRSYNASRRSRSSSRERRRRRS-RSSSRS-PRTSKTIKRKSSRSPSPRSRN 415
Query: 237 NEFEARSRE-DHYRRDEKRPKRHESESYLREDQDRRGGDK 275
+ + R +E DH E+R +R S S + DR G +K
Sbjct: 416 KKDKKREKERDHI--SERR-ERERSSSTRKSSNDRDGKEK 452
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 134 (52.2 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 50/206 (24%), Positives = 85/206 (41%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQRA 153
A + GR +RV G R R R + H+ R+
Sbjct: 78 ALLDGRELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRR-SRSRSPR----RRKHSRSRS 132
Query: 154 ANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRA-TGSGRVALEGNPNQSDRREEKRSIRH 212
+ SR+ + +S ++ S SR+ T + R + +P++S R + +S H
Sbjct: 133 RSRSRSRSRSRSRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPSRSRSRSKSKS--H 190
Query: 213 DHREKPREDHGRREDKRSRRHSDNNE 238
PR + G + RSR + E
Sbjct: 191 SRSRTPRSNKGSKSRSRSRSRPKSPE 216
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 133 (51.9 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--N----L 91
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + N L
Sbjct: 12 VYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSRAL 71
Query: 92 NGAQILGRTIR 102
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 141 (54.7 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 8 KRIQHINSKEADLG--ISDD--ASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
K + + SKE L I D A + + +A ++VGG+P D TE + F Q G ++
Sbjct: 215 KCVNEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 64 DVNLVRDKGTGKPRGFAFVAYEDQ 87
D L+ DK TG+PRGF FV YE++
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENE 298
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 17/56 (30%), Positives = 36/56 (64%)
Query: 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR 88
++ +++GG+ ++ T+ L F Q GE++D ++RD TG+ RGF F+ +++ +
Sbjct: 160 REDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
Score = 60 (26.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 136 GECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGR-VAL 194
G+CT + F + R + D+ + G + GF +N+S+ AT S + +
Sbjct: 256 GDCTEEEFRNFFNQFGRVLDATL-MMDKDT--GRPRGFGFVTYENESAVEATMSQPYITI 312
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHG 223
G P + R K S+R H R HG
Sbjct: 313 HGKPVEVKRATPKASLRDSH---DRHQHG 338
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 137 (53.3 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY---EDQRN-- 89
S+ ++VGGI + E L F++ GE+VD ++ D+ TG+ RGFAFV + E+ N
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 90 NLNGAQILGRTIRVDH 105
L+G + GR IRV++
Sbjct: 93 QLDGQDLHGRRIRVNY 108
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 119 (46.9 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 15 SKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTG 74
S E++ G DAS + + D +++GG+ +D T+ DL F++ GE+VD L D TG
Sbjct: 60 SAESE-GAKIDASKNEE--DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG 116
Query: 75 KPRGFAFVAYEDQRN 89
+ RGF FV +++ +
Sbjct: 117 RSRGFGFVLFKESES 131
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 140 (54.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 62/267 (23%), Positives = 101/267 (37%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + ++ +E + F G I V+LV D+ T KP+G+AF+ Y R+
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 92 NGAQILGRTIRVD-----HVAXXXXXXXXXXXXXXXXXXXXGVCRAFQ-RGECTRGDGCK 145
+G +I GR + VD V + Q +G ++ +
Sbjct: 200 DGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQGRTSQSEEPS 259
Query: 146 FSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGK--NDSSSRATGSGRVALEGNPNQSDR 203
E+ + G ++RS HE+ S + D R G G D
Sbjct: 260 RPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRDQG-----GRDRDRDS 314
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHS-DNNEFEARSRED-HYRRDEKRPKRHESE 261
R ++ R D ++ R D R D+ SR H D + + R E Y + R
Sbjct: 315 RRDRDRTR-DRGDRDRRDRDRGRDRTSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERDA 373
Query: 262 SYLREDQDRRGGDKSSTGRGDSSSHRH 288
Y E ++ RG + G D SHR+
Sbjct: 374 EYRGEPEETRGYYEDDQGDTDRYSHRY 400
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 118 (46.6 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQIL 97
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E + + A+ +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 GRTIRVD 104
+ VD
Sbjct: 70 NGKMTVD 76
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 118 (46.6 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------ 88
S +++GG+ + + L FA G++VD ++ D+ TG+ RGF FV + D+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 89 NNLNGAQILGRTIRVD 104
+ ++G ++ GR IRV+
Sbjct: 94 SEMDGKELNGRHIRVN 109
>WB|WBGene00018926 [details] [associations]
symbol:F56A11.6 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
GO:GO:0009792 EMBL:FO080624 GeneTree:ENSGT00700000104144
RefSeq:NP_499950.3 EnsemblMetazoa:F56A11.6 GeneID:176884
KEGG:cel:CELE_F56A11.6 UCSC:F56A11.6 CTD:176884 WormBase:F56A11.6
eggNOG:NOG250747 InParanoid:O44519 OMA:SHHEKER NextBio:894440
Uniprot:O44519
Length = 419
Score = 139 (54.0 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 46/151 (30%), Positives = 63/151 (41%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKND---SSSRATGSGRVALEGNPNQSDR 203
S ++ + GG + RS R H+K ++D S SR R ++ DR
Sbjct: 248 SRQDRERDRSRGGEKSRSPRKSHQKSVDRDKTRSDKDRSRSRKDREDRDRERSRKDREDR 307
Query: 204 -REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESES 262
RE R R D K RED R ++ R + E RSR+D RD R + +
Sbjct: 308 DRERSRKEREDRSRKDREDRERERSRKEREDRSRKDRE-RSRQDREDRDRDRDRDRSRKD 366
Query: 263 YLREDQD--RRGGDKSSTGRGDSSSHRHRER 291
R+D+ RR D S R D S RER
Sbjct: 367 --RDDKSCSRRSRDDRSEERKDRKSRDDRER 395
Score = 121 (47.7 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 42/138 (30%), Positives = 61/138 (44%)
Query: 158 GGPQDRSSRWGHE---KFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDH 214
G P D R E + E K+ S R R + ++S E+ RS R H
Sbjct: 211 GPPSDDDRRRDEEDRRRTEDVDRSKDRSLKRREERSRSRQDRERDRSRGGEKSRSPRKSH 270
Query: 215 REKPREDHGRREDKRSRRHSDNNEFEA-RSREDHYRRDEKRPKRHESESYLREDQDRRGG 273
++ D R + RSR D + + RSR+D RD +R R E E R+D++ R
Sbjct: 271 QKSVDRDKTRSDKDRSRSRKDREDRDRERSRKDREDRDRER-SRKEREDRSRKDREDRER 329
Query: 274 DKSSTGRGDSSSHRHRER 291
++S R D S + RER
Sbjct: 330 ERSRKEREDRS-RKDRER 346
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 132 (51.5 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLN----- 92
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + LN
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 93 -GAQILGRTIR 102
Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 132 (51.5 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLN----- 92
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + LN
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 93 -GAQILGRTIR 102
Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 132 (51.5 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLN----- 92
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + LN
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 93 -GAQILGRTIR 102
Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 97 (39.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 40/169 (23%), Positives = 69/169 (40%)
Query: 128 GVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRAT 187
G R+ R + +R S ++ + +RS ++ S K S SR
Sbjct: 193 GRSRSHTRSK-SRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRER 251
Query: 188 GSGRVALEGNPNQSDRREE-KRSIRHDHREKPRE-DHGRREDKRSRRHSDNN-EFEA--- 241
R + D RE+ K ++ REK RE + R +DK ++ D + E E
Sbjct: 252 RKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHE 311
Query: 242 RSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTG-RGDSSSHRHR 289
+ R+ +++ + K E + D+ R+ KS T R ++S R R
Sbjct: 312 KERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNASRRSR 360
Score = 93 (37.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 35/143 (24%), Positives = 65/143 (45%)
Query: 150 EQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS 209
E +N G + RS H + + S K+ S + + S + N ++S +++ +RS
Sbjct: 183 ESGKSNERKGGRSRS----HTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRS 238
Query: 210 IR-HDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
H R K RE RR+ RSR S + + R + ++++R K E E +D+
Sbjct: 239 KSPHKKRSKSRE---RRKS-RSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDK 294
Query: 269 DRRGGDKSSTGRGDSSSHRHRER 291
+R G +K + + R++
Sbjct: 295 ER-GKNKDKDREKEKDHEKERDK 316
Score = 87 (35.7 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGD-LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NL 91
VYVG + T D LL F Q GE+ V + D+ +P FAFV + DQ +
Sbjct: 71 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRALAF 128
Query: 92 NGAQILGRTIRVDH 105
NG R ++++H
Sbjct: 129 NGVMFGDRPLKINH 142
Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 200 QSDRREEKRSIRHDHREKPRE---DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK 256
+ D+ +EK + REK R D R+++K+SR + RSR R +R
Sbjct: 313 ERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNASRRSRSTSRERRRRR-S 371
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R S S +R +S + RG + + RE+
Sbjct: 372 RSSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREK 406
Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/102 (31%), Positives = 50/102 (49%)
Query: 193 ALEGNPNQSDRREEKRSIRHDHREKPR---EDHGRREDKRSRRHSDNNEFEARSREDHYR 249
A+E +S+ R+ RS H R K R + H RR+ +S+ H + +RSR+ R
Sbjct: 179 AIEPESGKSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSK-HRSRSHNRSRSRQKDRR 236
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R K P + S+S RE + R +S R D+ + +ER
Sbjct: 237 RS-KSPHKKRSKS--RERRKSRSRSRSRDKRKDTRE-KVKER 274
Score = 83 (34.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 200 QSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNN-EFEA-RSREDHYRRDEKRPK 256
+ DR ++K ++ +++ +E DH + DK + D + E E RS+E +R +++
Sbjct: 287 EKDREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKS 346
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
R SY + R + R SSS R
Sbjct: 347 RTPPRSYNASRRSRSTSRERRRRRSRSSSRSPR 379
Score = 83 (34.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 33/155 (21%), Positives = 60/155 (38%)
Query: 140 RGDGCKFSH--NEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGN 197
R G SH ++ R+++ + RS + S + R+ + +
Sbjct: 190 RKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR 249
Query: 198 PNQSDR-REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK 256
+ R R R R D REK +E +E ++ R + E + + R + +D ++ K
Sbjct: 250 ERRKSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKD-KERGKNKDKDREKEK 308
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
HE E R+ + + DK D S +R
Sbjct: 309 DHEKE---RDKEKEKEQDKDKEREKDRSKETDEKR 340
>ASPGD|ASPL0000006999 [details] [associations]
symbol:AN6903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
GO:GO:0030529 EMBL:AACD01000113 eggNOG:COG0724 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OrthoDB:EOG4HMNKR
RefSeq:XP_664507.1 ProteinModelPortal:Q5AXS7 STRING:Q5AXS7
EnsemblFungi:CADANIAT00007705 GeneID:2870614 KEGG:ani:AN6903.2
HOGENOM:HOG000177264 OMA:GRGYTKA Uniprot:Q5AXS7
Length = 373
Score = 92 (37.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 31/98 (31%), Positives = 45/98 (45%)
Query: 151 QRAANTGGGPQD-RSSRWGHEKFEGFSWGKNDSSSRATGS-GRVALEGNPNQSDRREEKR 208
Q N GP RS +G G + G N R S G DRR+ R
Sbjct: 274 QAPPNAPSGPGGGRSGGYGGRSDRGGT-GSNREPIRPRDSYGDRDRRDRDRDGDRRDRDR 332
Query: 209 -SIRHDHREKPREDHGRREDK-RSRRHSDNNEFEARSR 244
S R+ R++ RE +G RED+ R R H D++ ++R++
Sbjct: 333 DSYRYRDRDRERERYGSREDQGRKRYHEDDSYDDSRAK 370
Score = 90 (36.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 30/109 (27%), Positives = 47/109 (43%)
Query: 152 RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIR 211
R+ G P + S G + G+ G++D TGS R + + DR R
Sbjct: 268 RSGFGGQAPPNAPSGPGGGRSGGYG-GRSDRGG--TGSNREPIRPRDSYGDRDRRDRDRD 324
Query: 212 HDHREKPREDHGRREDKRSRRHSDNNEFEARSR---EDHYRRDEKRPKR 257
D R++ R+ + R+ R R + E + R R +D Y D+ R KR
Sbjct: 325 GDRRDRDRDSYRYRDRDRERERYGSREDQGRKRYHEDDSY--DDSRAKR 371
Score = 89 (36.4 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD----KGTGKP-RGFAFVAYEDQRN 89
++V + ++ TE DL F + G I + +V+D KG KP RG+AF+ YE +++
Sbjct: 104 LFVSRLSYEATEQDLEREFGRFGPIERIRIVKDTVTPKGAKKPHRGYAFIVYEREKD 160
Score = 88 (36.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 37/126 (29%), Positives = 55/126 (43%)
Query: 152 RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRA-----TGSGRVALEGNPNQSDR--- 203
R + GG DR +G G+ G++ +A +G G G +SDR
Sbjct: 243 RGGSRGGFRNDRG--FGPRGGIGYQGGRSGFGGQAPPNAPSGPGGGRSGGYGGRSDRGGT 300
Query: 204 ---REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHY--RRDEKRPKR 257
RE R R + ++ R D R D+R R D+ + R RE + Y R D+ R +
Sbjct: 301 GSNREPIRP-RDSYGDRDRRDRDRDGDRRDRDR-DSYRYRDRDRERERYGSREDQGRKRY 358
Query: 258 HESESY 263
HE +SY
Sbjct: 359 HEDDSY 364
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 99 (39.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 26/125 (20%), Positives = 57/125 (45%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
S + Q+ P + S+ E+ + S ++ + T ++ + + DR +E
Sbjct: 341 SRSRQKDRRRSKSPHKKRSK-SRERRKSRSRSRSRDKRKDTRE-KIKEKERVKEKDREKE 398
Query: 207 KRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
+ R +E+ +E + G+ +DK + D ++ + R RE D++R K E E
Sbjct: 399 REKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKE 458
Query: 266 EDQDR 270
+++D+
Sbjct: 459 KERDK 463
Score = 89 (36.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/103 (31%), Positives = 50/103 (48%)
Query: 193 ALEGNPNQSDRREEKRSIRHDHREKPR---EDHGRREDKRSRRHSDNNEFEARSREDHYR 249
A+E +S+ R+ RS H R K R + H RR+ +S+ H + +RSR+ R
Sbjct: 292 AIEPESGKSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSK-HRSRSHNRSRSRQKDRR 349
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSH-RHRER 291
R K P + S+S RE + R +S R D+ + +ER
Sbjct: 350 RS-KSPHKKRSKS--RERRKSRSRSRSRDKRKDTREKIKEKER 389
Score = 87 (35.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGD-LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NL 91
VYVG + T D LL F Q GE+ V + D+ +P FAFV + DQ +
Sbjct: 184 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEFADQNSVPRALAF 241
Query: 92 NGAQILGRTIRVDH 105
NG R ++++H
Sbjct: 242 NGVMFGDRPLKINH 255
Score = 83 (34.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 25/95 (26%), Positives = 41/95 (43%)
Query: 200 QSDRREEKRSIRHDHREKPRE---DHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPK 256
+ D+ +EK + R+K R D R++DK+SR + RSR R +R
Sbjct: 446 ERDKEKEKEQDKEKERDKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRR-S 504
Query: 257 RHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R S S +R +S + R + + RE+
Sbjct: 505 RSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREK 539
Score = 81 (33.6 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 30/98 (30%), Positives = 47/98 (47%)
Query: 200 QSDRREEK-RSIRHD-HREKPRE-DHGR-REDKRSRRHSDNNEFEARSREDHYR-RDEKR 254
+ +R +EK R D REK R+ D + RE +R + H + E +D + RD+ R
Sbjct: 406 EKEREKEKERGKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKEKERDKDR 465
Query: 255 PKRHESESYLREDQDRRGGDKS-STGRGDSSSHRHRER 291
K E + ++D+ R +S + R SS R R R
Sbjct: 466 SK--EIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRR 501
Score = 77 (32.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 182 SSSRATGSGRVALEGNPNQSDRREEKRS-IRHDHREKPRE-DHGRREDKRSRRHSDNNEF 239
S+ R G R S + +R + HR + R++D+R +
Sbjct: 300 SNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRS 359
Query: 240 EARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
++R R R R KR ++ ++E + + D+ + + RE+
Sbjct: 360 KSRERRKSRSRSRSRDKRKDTREKIKEKERVKEKDREKEREKERDREKEREK 411
Score = 75 (31.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHSDNN-EFEARSREDHYRRDEKRPKR--HES 260
RE +R HD +E+ +E + +DK R D + E + + ++D R R S
Sbjct: 435 RERERDKEHD-KERDKEKE-KEQDKEKERDKDRSKEIDEKRKKDKKSRTPPRSYNASRRS 492
Query: 261 ESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
S RE + RR S + R + R R
Sbjct: 493 RSSSRERRRRRSRSSSRSPRTSKTIKRKSSR 523
Score = 75 (31.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/97 (22%), Positives = 40/97 (41%)
Query: 196 GNPNQSDRREEKRSIRHDHREKPRE-DHGRREDKRSRRHSDNNEF--EARSREDHYRRDE 252
G +R +++ + RE+ R+ +H + DK + D + + RS+E +R +
Sbjct: 416 GKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKEKERDKDRSKEIDEKRKK 475
Query: 253 KRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
+ R SY + R + R SSS R
Sbjct: 476 DKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPR 512
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 108 (43.1 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 39/139 (28%), Positives = 63/139 (45%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
SH+ R+ + + SR G K S K+ S SR+ GS + + +QS R +
Sbjct: 190 SHSRSRSRSRHS--RKSRSRSGSSKS---SHSKSRSRSRS-GSHSRSKSRSRSQSRSRSK 243
Query: 207 KRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLRE 266
K R ++ R DK + D+ E + ++ + + P RH+S+S R
Sbjct: 244 KEKSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRS 303
Query: 267 DQDRRGGD--KSSTGRGDS 283
Q+RR + +SST RG S
Sbjct: 304 -QERRAEEERRSSTSRGHS 321
Score = 89 (36.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/114 (25%), Positives = 44/114 (38%)
Query: 171 KFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS 230
K + S ++DS SR+ R A E + + R + R + R G R RS
Sbjct: 286 KAKSHSPSRHDSKSRSRSQERRAEEERRSSTSRGHSQEKSLLKSRSRSRSKVGSRSRSRS 345
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSS 284
+ D + RSRE+ R + +R S R+ + K G D S
Sbjct: 346 KS-KDKRKGRKRSREESRSRSRSKSERSRKHSSKRDSKVSSSSSKKKKGDTDHS 398
Score = 86 (35.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 194 LEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS-RRHSDNNEFEARSREDHYRRDE 252
+E P RR RS H R + R H R+ RS S +++ +RSR + R +
Sbjct: 173 VEDKPGSRRRRSYSRSRSHS-RSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSK 231
Query: 253 KRPKRHESESYLREDQDRRGG-DKSSTGRGDS 283
R R +S S ++++ R D S R S
Sbjct: 232 SR-SRSQSRSRSKKEKSRSPSKDNKSRSRSRS 262
Score = 86 (35.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 35/120 (29%), Positives = 53/120 (44%)
Query: 176 SWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDH-REKPRE-DHGRREDKRSRRH 233
S ++ S SR + R + G+ S + RS H R K R R K+ +
Sbjct: 190 SHSRSRSRSRHSRKSR-SRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSR 248
Query: 234 SDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS-STGRGDSSSH-RHRER 291
S + + ++RSR + + K H +E L ++ D G KS S R DS S R +ER
Sbjct: 249 SPSKDNKSRSRSRSPDKSRSKSKDH-AEDKL-QNNDSAGKAKSHSPSRHDSKSRSRSQER 306
Score = 83 (34.3 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 174 GFSWGKNDSSSRATGSGRVALEGNPNQS-DRREEKRSIRHDHREKPREDHGRREDKRSRR 232
G S K+ SR+ +V G+ ++S + ++KR R RE+ R R + +RSR+
Sbjct: 319 GHSQEKSLLKSRSRSRSKV---GSRSRSRSKSKDKRKGRKRSREESRS-RSRSKSERSRK 374
Query: 233 HSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRG--GDKSSTGRGDS 283
HS + + S ++ + R S S +E + G + S G+S
Sbjct: 375 HSSKRDSKVSSSSSKKKKGDTDHSRSPSRSVSKEREHATAEPGQRESRAEGES 427
Score = 74 (31.1 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VY+G + + E D+ F G+I++V+L G+ FV ++D R+ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55
Query: 92 NGAQILGRTIRVDH 105
NG + G + V+H
Sbjct: 56 NGKDLCGERVIVEH 69
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 131 (51.2 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D L
Sbjct: 40 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 99
Query: 92 NGAQILGRTIRVDHV 106
NG ++ GR +RV HV
Sbjct: 100 NGFELAGRPMRVGHV 114
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY--EDQRNN----L 91
VYV +PF LT DL +F++ G++V V +++DK T + +G AF+ + +D N +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71
Query: 92 NGAQILGRTIR 102
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV---AYEDQRNNL--- 91
+YVG +P+ +T +L +F + G +VDV +V DK T + RGF FV + E+ + +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 92 NGAQILGRTIRVD 104
N +QI GRT++V+
Sbjct: 178 NSSQIGGRTVKVN 190
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + D DL F + G IVDV + D T +PRGFA+V +ED R+ NL
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRV 103
+ I GR I +
Sbjct: 72 DRKWICGRQIEI 83
Score = 65 (27.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 178 GKND-SSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREK--PREDHGRREDKRSRRHS 234
G+N SSSR R + + RR RS +++R PR R +RSR HS
Sbjct: 101 GRNVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRP-RRSRSHS 159
Query: 235 DNNEFEARSRED 246
DN+ ++ + +
Sbjct: 160 DNDSQVSKKKNE 171
Score = 60 (26.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 198 PNQSDRREEKR---SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
PNQ +E + S R+D ++ R R ++R R S + ++ R R R
Sbjct: 93 PNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR-RSRSRSFDYNYRRSYSPRNRPTGR 151
Query: 255 PKRHESES 262
P+R S S
Sbjct: 152 PRRSRSHS 159
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRNNL---NG 93
V G+ TE DL VF++ G + VN+V D+ TG+ RGFAFV +E D + + NG
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 81
Query: 94 AQILGRTIRVDH 105
++ GR IRVD+
Sbjct: 82 MELDGRRIRVDY 93
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 114 (45.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 35 SAYVYVGGIPFDLTEGDLLAV-FAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87
S ++VG + FD TE DLL F CGEIV + + + TGK +GFAF+ ++D+
Sbjct: 214 SRILFVGNLSFDTTE-DLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDE 266
Score = 64 (27.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 177 WGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHG--RREDKRSRRHS 234
+G++ S R + N N +E R++ +KP D R + S
Sbjct: 290 YGEDRSKRRPKRANDFGDHSNNNNDSYKENNRTVN----DKPEFDSSNQRFDGNDSYGER 345
Query: 235 DNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
DN + + R R D Y + KR +S L Q
Sbjct: 346 DNKKRQYRERNDGYNKTNNSNKRMKSSVALASAQ 379
Score = 59 (25.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
K R ++G ED+ RR N+F S ++ E ++ + +Q G D
Sbjct: 285 KLRMEYG--EDRSKRRPKRANDFGDHSNNNNDSYKENNRTVNDKPEFDSSNQRFDGND-- 340
Query: 277 STGRGDSSSHRHRER 291
S G D+ ++RER
Sbjct: 341 SYGERDNKKRQYRER 355
Score = 51 (23.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRR---HSDNNE--FEARSR--EDH 247
EG + K I R + ED +R KR+ HS+NN ++ +R D
Sbjct: 267 EGATTALKSKLTKMLINRKLRMEYGEDRSKRRPKRANDFGDHSNNNNDSYKENNRTVNDK 326
Query: 248 YRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
D + ++SY D +R + + G +++ R
Sbjct: 327 PEFDSSNQRFDGNDSYGERDNKKRQYRERNDGYNKTNNSNKR 368
Score = 49 (22.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 132 AFQRGECTRGDGCKFSHNEQRA-ANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSG 190
+++ T D +F + QR N G +D R E+ +G++ N+S+ R S
Sbjct: 315 SYKENNRTVNDKPEFDSSNQRFDGNDSYGERDNKKRQYRERNDGYN-KTNNSNKRMKSSV 373
Query: 191 RVA 193
+A
Sbjct: 374 ALA 376
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 114 (45.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 35 SAYVYVGGIPFDLTEGDLLAV-FAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87
S ++VG + FD TE DLL F CGEIV + + + TGK +GFAF+ ++D+
Sbjct: 214 SRILFVGNLSFDTTE-DLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDE 266
Score = 64 (27.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 177 WGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHG--RREDKRSRRHS 234
+G++ S R + N N +E R++ +KP D R + S
Sbjct: 290 YGEDRSKRRPKRANDFGDHSNNNNDSYKENNRTVN----DKPEFDSSNQRFDGNDSYGER 345
Query: 235 DNNEFEARSREDHYRRDEKRPKRHESESYLREDQ 268
DN + + R R D Y + KR +S L Q
Sbjct: 346 DNKKRQYRERNDGYNKTNNSNKRMKSSVALASAQ 379
Score = 59 (25.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
K R ++G ED+ RR N+F S ++ E ++ + +Q G D
Sbjct: 285 KLRMEYG--EDRSKRRPKRANDFGDHSNNNNDSYKENNRTVNDKPEFDSSNQRFDGND-- 340
Query: 277 STGRGDSSSHRHRER 291
S G D+ ++RER
Sbjct: 341 SYGERDNKKRQYRER 355
Score = 51 (23.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRR---HSDNNE--FEARSR--EDH 247
EG + K I R + ED +R KR+ HS+NN ++ +R D
Sbjct: 267 EGATTALKSKLTKMLINRKLRMEYGEDRSKRRPKRANDFGDHSNNNNDSYKENNRTVNDK 326
Query: 248 YRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
D + ++SY D +R + + G +++ R
Sbjct: 327 PEFDSSNQRFDGNDSYGERDNKKRQYRERNDGYNKTNNSNKR 368
Score = 49 (22.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 132 AFQRGECTRGDGCKFSHNEQRA-ANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSG 190
+++ T D +F + QR N G +D R E+ +G++ N+S+ R S
Sbjct: 315 SYKENNRTVNDKPEFDSSNQRFDGNDSYGERDNKKRQYRERNDGYN-KTNNSNKRMKSSV 373
Query: 191 RVA 193
+A
Sbjct: 374 ALA 376
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNG 93
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ + +
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 94 AQILGRTIRV 103
+ +R+
Sbjct: 64 MMAMNGKVRI 73
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 34 DSAY-VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV--AYEDQRN- 89
D+A+ +YVG +P+D+ G L +F++ G++VD +V D+ TG+ RGF FV + E++ N
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 90 ---NLNGAQILGRTIRVD 104
L+G + GR I+V+
Sbjct: 264 AIAALDGQNLEGRAIKVN 281
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 99 (39.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + D DL F + G IVDV + D T +PRGFA+V +ED R+ NL
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRV 103
+ I GR I +
Sbjct: 72 DRKWICGRQIEI 83
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 198 PNQSDRREEKR---SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
PNQ +E + S R+D ++ R R D+R R S + ++ R R R
Sbjct: 93 PNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYDRR-RSRSRSFDYNYRRSYSPRNRPTGR 151
Query: 255 PKRHESESYLREDQDR 270
P+R S S D DR
Sbjct: 152 PRRSRSHS----DNDR 163
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 94 (38.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 34/138 (24%), Positives = 62/138 (44%)
Query: 151 QRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSI 210
+R + +G + RS R + S +++S SR+ R + ++S RR +S
Sbjct: 189 RRRSYSGSRSRSRSRRRSRSRSRRSSRSRSNSRSRSRSRSR--RHRSRSRSGRRSRSKS- 245
Query: 211 RHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYR---RDEKRPKRHESESYLRED 267
H R K R +++S S + ++RSR + R + R R +S S ++ D
Sbjct: 246 GHKSRSKSPSSKSRSRNRKSHSRSRSRTHKSRSRSTSRKSRSRSDDRKSRSKSTSKVKSD 305
Query: 268 QDRRGGDKSSTGRGDSSS 285
+ R +KS + + S S
Sbjct: 306 RGR-SKEKSVSKKSRSRS 322
Score = 92 (37.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 32/122 (26%), Positives = 54/122 (44%)
Query: 175 FSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDK--RSRR 232
+S ++ S SR R + + ++S+ R RS HR + R R +SR
Sbjct: 193 YSGSRSRSRSRRRSRSR-SRRSSRSRSNSRSRSRSRSRRHRSRSRSGRRSRSKSGHKSRS 251
Query: 233 HSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS---STGRGDSSSHRHR 289
S +++ +R+R+ H R R + S S R+ + R KS ST + S R +
Sbjct: 252 KSPSSKSRSRNRKSH-SRSRSRTHKSRSRSTSRKSRSRSDDRKSRSKSTSKVKSDRGRSK 310
Query: 290 ER 291
E+
Sbjct: 311 EK 312
Score = 91 (37.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 33/108 (30%), Positives = 45/108 (41%)
Query: 185 RATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHS-DNNEFEARS 243
R+ R ALE + +D K + D + R G R RSRR S + +RS
Sbjct: 158 RSYSDMRRALE-KLDGTDINGRKIRLVEDKPRRRRSYSGSRSRSRSRRRSRSRSRRSSRS 216
Query: 244 REDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R + R R +RH S S + G KS + + SS R R R
Sbjct: 217 RSNSRSRSRSRSRRHRSRSRSGRRSRSKSGHKSRS-KSPSSKSRSRNR 263
Score = 85 (35.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VY+G + + + E D+ F+ G++++V+L G+ FV +ED R+ L
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDL--------KNGYGFVEFEDTRDADDAVYEL 55
Query: 92 NGAQILGRTIRVDH 105
NG ++ G + V+H
Sbjct: 56 NGKELCGERVMVEH 69
Score = 69 (29.3 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 30/114 (26%), Positives = 46/114 (40%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNE 238
K+ S SR+ + + +S R + R R K + D GR ++K + S
Sbjct: 264 KSHSRSRSR-THKSRSRSTSRKSRSRSDDRKSRSKSTSKVKSDRGRSKEKSVSKKS---- 318
Query: 239 FEARSREDHYRRDEKRPKR-HESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
+RS D +RPK S S E + D+ S R S+S R + R
Sbjct: 319 -RSRSASPMENGDGERPKSASRSPSPQAEQSKYKSPDRHSRSRSKSAS-RSKSR 370
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED--QRN 89
Y+ + VYVG +P+D+ G L +F++ G++V+ +V D+ TG+ RGF FV D + N
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 90 N----LNGAQILGRTIRVD 104
L+G + GR IRV+
Sbjct: 300 EAISALDGQNLEGRAIRVN 318
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 113 (44.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 30 AKYKDS-AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE--- 85
AK D A + + + F +E DL AVF G +++VN+ + K GK RGFAFV ++
Sbjct: 107 AKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPK-KPDGKMRGFAFVQFKNLL 165
Query: 86 DQRNNLNGA---QILGRTIRVD 104
+ L GA +I GRT+ VD
Sbjct: 166 EAGKALKGANMKEIKGRTVAVD 187
Score = 71 (30.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 28/95 (29%), Positives = 39/95 (41%)
Query: 196 GNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR- 254
G SDR+ ++ ++ E+ ED ED S + E S ++R KR
Sbjct: 205 GVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDDDSHDDEEERESTIASPVSVHKRAVKRA 264
Query: 255 -PKR--HESESYLREDQD-RRGGDKSSTGRGDSSS 285
P+ E +SY ED D GG G DS S
Sbjct: 265 APEESIEEDDSY--EDSDLEEGGSSYDEGTVDSES 297
Score = 46 (21.3 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/91 (18%), Positives = 38/91 (41%)
Query: 160 PQDRSSRWGHEKFEGFSW-GKNDSSSRATGSGR---VALEGNPNQSDRREEKRSIRHDHR 215
P ++ + G + GF + + G R +AL + R +K ++
Sbjct: 625 PGEQKGKAGSTSWSGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKSLPS 684
Query: 216 EKPREDHGRREDKRSRRHSDNNEFEARSRED 246
KP+ G+R+ K+ + S + +++E+
Sbjct: 685 RKPKPQMGQRKQKKQQLASSVQAPKRKAKEN 715
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 109 (43.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 45/150 (30%), Positives = 59/150 (39%)
Query: 141 GDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQ 200
G G R G DRS R ++ G + D R +G R E +Q
Sbjct: 256 GSGGSGGDRGDRGDRDRGDRGDRSDRSDRDRERG----RGDRDHRGSGGER---ERERDQ 308
Query: 201 SDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHES 260
DR ++ R D ++ R D G R D RS R D+ E R R+D R D R R
Sbjct: 309 RDRGGDRGGDRGDRSDRGRSDRGDRGD-RSDRGRDDRE---RGRDD--RGDRGRDDRRGG 362
Query: 261 ESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
D+DR G + G D S R R+
Sbjct: 363 S-----DRDRDRGSRDDRGDRDDRSDRGRD 387
Score = 104 (41.7 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 42/140 (30%), Positives = 56/140 (40%)
Query: 135 RGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVAL 194
RG+ RGD S R G G +D G + E D R G R
Sbjct: 267 RGDRDRGDRGDRSDRSDRDRERGRGDRDHRGSGGERERE------RDQRDR--GGDRGGD 318
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGR-REDKRSRRHSDNNEFEARSREDHYRRDEK 253
G+ +SDR R R D ++ R+D R R+D+ R D R R D RD++
Sbjct: 319 RGD--RSDRGRSDRGDRGDRSDRGRDDRERGRDDRGDRGRDDRRGGSDRDR-DRGSRDDR 375
Query: 254 RPKRHESESYLREDQDRRGG 273
+ S+ R DRRGG
Sbjct: 376 GDRDDRSD---RGRDDRRGG 392
Score = 96 (38.9 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 42/130 (32%), Positives = 58/130 (44%)
Query: 174 GFSWGKNDSSSRATGSGRVALE-GNPNQSDRREE-KRSIRHDH-REKPR--EDH----GR 224
G S N S+ ++GSG + G+ DR + RS R D RE+ R DH G
Sbjct: 242 GLSSNGNRSNGISSGSGGSGGDRGDRGDRDRGDRGDRSDRSDRDRERGRGDRDHRGSGGE 301
Query: 225 REDKRSRRHSDNNEFEARS-REDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGD- 282
RE +R +R + R R D R D R R + R+D++R D+ GR D
Sbjct: 302 RERERDQRDRGGDRGGDRGDRSDRGRSD--RGDRGDRSDRGRDDRERGRDDRGDRGRDDR 359
Query: 283 -SSSHRHRER 291
S R R+R
Sbjct: 360 RGGSDRDRDR 369
Score = 86 (35.3 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 161 QDRSSRWGHEKFEGFSWGKNDSSSRATGS--GRVALE-GNPNQSDR-REEKRSIRHDHRE 216
+DR G ++ + G++D R S GR E G ++ DR R+++R R+
Sbjct: 309 RDRGGDRGGDRGDRSDRGRSDRGDRGDRSDRGRDDRERGRDDRGDRGRDDRRGGSDRDRD 368
Query: 217 K-PREDHGRREDKRSRRHSDNNEFEARS-REDHYRRDEK 253
+ R+D G R+D+ R D R R D RRD++
Sbjct: 369 RGSRDDRGDRDDRSDRGRDDRRGGSDRDHRIDERRRDQR 407
Score = 70 (29.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTG-KPRGFAFVAYEDQRN------N 90
++V I + T+ L F Q G I + LV+D K G+AF+ +E +R+
Sbjct: 101 IFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQ 160
Query: 91 LNGAQILGRTIRVD 104
+G +I R I VD
Sbjct: 161 ADGMKIDDRRIVVD 174
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 119 (46.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + +E L A F++ G I +V L++D+ T K RGFAFV YE D +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 92 NGAQILGRTIRVD 104
NG + G+ I+V+
Sbjct: 70 NGKPLDGKPIKVE 82
Score = 56 (24.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/103 (25%), Positives = 41/103 (39%)
Query: 190 GRVALEGNPNQSDRREEKRSIRHDHREKPREDH-GRREDKRSRRHS---DNNEFEARSRE 245
GR + + +P R + R D R+DH G ++ SR + D+ ++ R+
Sbjct: 163 GRPSRDRDPYGPPPRRDSLMSRRDDGPPHRDDHYGSKDSYSSRDYMSSRDSRDYGPPPRD 222
Query: 246 DHYRR-DEKRPKRHESESYLR--EDQDRRGGDKSSTGRGDSSS 285
YR R + S R D+D GG + G D S
Sbjct: 223 YPYREYSGHSSSRDDYGSGSRGYSDRDGYGGGREPRGYIDRPS 265
Score = 41 (19.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 34/134 (25%), Positives = 49/134 (36%)
Query: 159 GPQDRSSRWGHEKFEGFSWGKNDSSSRATG-SGRVALEGNPNQSDRREEKRSIRHDHREK 217
GP R + + ++ G S ++D S + G S R G + R R +R+
Sbjct: 217 GPPPRD--YPYREYSGHSSSRDDYGSGSRGYSDRDGYGGG--REPRGYIDRPSAGSYRD- 271
Query: 218 PREDHGR-REDKRSRRHSDNNEFEA-RSREDHYRRDEKRPKRHESESYLREDQDRRGGDK 275
P + +G R SR + SR D Y R +SY R D
Sbjct: 272 PYDGYGNSRSAPPSRGPPPSYSGSGGSSRYDDYG-SSSRDGYGSRDSY---PSSR--SDP 325
Query: 276 SSTGRGDSSSHRHR 289
ST RGD + R
Sbjct: 326 YSTNRGDRPGRQER 339
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 56
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 132 (51.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 53/250 (21%), Positives = 94/250 (37%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + + DL F + G IVDV + D T PRGFA+V +ED R+ NL
Sbjct: 12 LFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
+ I GR I + + R +R + +
Sbjct: 72 DRKWICGRQIEIQFAQGDQKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSQSYERRRSRS 131
Query: 152 RAA--NTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRS 209
R+ N R+SR S ND + E + R++E++
Sbjct: 132 RSFDYNNRRSYSPRNSRPAGRPQRSRSHSDNDRKKERKKERKK--ERKKERKKRKKERKK 189
Query: 210 IRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRP--KRHESESYLRED 267
R R+K R+ R+++++ R + + + ++ R E+ K+ S SY ++
Sbjct: 190 ERKKERKKERKKEERKKERKKERKKERKKERKKEKKKKKRERERNKFKKKKSSNSYYKDG 249
Query: 268 QDRRGGDKSS 277
+ +K S
Sbjct: 250 SENISEEKMS 259
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 124 (48.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRNNL---NG 93
V G+ TE DL VF++ G + VN+V D+ TG+ RGFAFV +E D + + NG
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81
Query: 94 AQILGRTIRVDH 105
++ GR IRVD+
Sbjct: 82 MELDGRRIRVDY 93
>WB|WBGene00011730 [details] [associations]
symbol:drr-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0006412
"translation" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005844
GeneTree:ENSGT00530000063406 HSSP:P26368 EMBL:Z81120 PIR:T24858
RefSeq:NP_499818.1 ProteinModelPortal:O45781 SMR:O45781
DIP:DIP-26980N MINT:MINT-1066038 STRING:O45781 PaxDb:O45781
EnsemblMetazoa:T12D8.2.1 EnsemblMetazoa:T12D8.2.2 GeneID:259546
KEGG:cel:CELE_T12D8.2 UCSC:T12D8.2.1 CTD:259546 WormBase:T12D8.2
eggNOG:NOG240551 InParanoid:O45781 OMA:YVTFENE NextBio:952074
Uniprot:O45781
Length = 207
Score = 128 (50.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 48/199 (24%), Positives = 83/199 (41%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCG----EI--VDVNLVRDKGTGKPRGFAFVAYEDQR---- 88
++GG+P+D D+ + C E+ D++LV D+ +G +GFA+V +E+++
Sbjct: 9 FIGGLPYDSIATDIETILKHCKFTDEELKKFDIHLVHDRDSGSFKGFAYVTFENEQQMNT 68
Query: 89 --NNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRG-DGCK 145
+ LNGA R ++V+ R G RG +G +
Sbjct: 69 AISGLNGADFGNRVLKVNRAQQRDRSDRGGGRGGRGGNFGDRGGRGRGAGGFRRGGEGGR 128
Query: 146 FSHNEQRAANTGGGPQD--RSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDR 203
F+ E+R GGG + R R E+ + + S A + R L P +D
Sbjct: 129 FNEGERRGGFGGGGHRGGYRQRRESEEQHKA----EETSDPSAPPAERPRLNLKPRTTDA 184
Query: 204 RE-EKRSIRHDHREKPRED 221
E E R + + K R++
Sbjct: 185 AEIEARKKQEEEETKRRQE 203
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 124 (48.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRNNL---NG 93
V G+ TE DL VF++ G + VN+V D+ TG+ RGFAFV +E D + + NG
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81
Query: 94 AQILGRTIRVDH 105
++ GR IRVD+
Sbjct: 82 MELDGRRIRVDY 93
>UNIPROTKB|F1NYA2 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
Length = 146
Score = 114 (45.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNG 93
YVG +PF+ +GD+ A+F + V LVRDK T K +GF +V +++ + +G
Sbjct: 43 YVGNLPFNTVQGDIDAIFKDLS-VRSVRLVRDKETDKFKGFCYVEFDEVESLKEALTYDG 101
Query: 94 AQILGRTIRVD 104
A + R++RVD
Sbjct: 102 ALLGDRSLRVD 112
>DICTYBASE|DDB_G0288797 [details] [associations]
symbol:fip1l1 "cleavage and polyadenylation
specificity factor FIP1" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] dictyBase:DDB_G0288797 GO:GO:0006378
GenomeReviews:CM000154_GR EMBL:AAFI02000125 GO:GO:0005847
GO:GO:0006379 eggNOG:COG5213 InterPro:IPR007854 Pfam:PF05182
RefSeq:XP_636526.1 EnsemblProtists:DDB0233703 GeneID:8626811
KEGG:ddi:DDB_G0288797 InParanoid:Q54IF1 OMA:AYCERQN Uniprot:Q54IF1
Length = 560
Score = 137 (53.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 40/121 (33%), Positives = 57/121 (47%)
Query: 171 KFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS 230
++E S N+ S GS R E + + S R + R R RE+ R+D R E +RS
Sbjct: 356 QYEDDSNNNNNGSGSGGGSDRRRNESS-SSSSRGDSDRGERE--RERDRDDRDRSERERS 412
Query: 231 RRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRE 290
R D +E E R + R D R +R S+ R D+D+ SS+ SSS R +
Sbjct: 413 DR--DRSERERSDRSERERSDRDRSERERSDRSERSDRDKTSSSSSSSNNNSSSSTRGSD 470
Query: 291 R 291
R
Sbjct: 471 R 471
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 48/159 (30%), Positives = 64/159 (40%)
Query: 140 RGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGS-GRVALEGNP 198
RG G +S Q ++ S G ++ S + SSSR G E +
Sbjct: 345 RGSGRTYSTTNQYEDDSNNNNNGSGSGGGSDRRRNES---SSSSSRGDSDRGERERERDR 401
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRRE----DKRSRRHSDNNEFEARSREDHYRRDEKR 254
+ DR E +RS R D E+ R D RE D+ R SD +E RS D
Sbjct: 402 DDRDRSERERSDR-DRSERERSDRSERERSDRDRSERERSDRSE---RSDRDKTSSSSSS 457
Query: 255 PKRHESESYLREDQ-DR-RGGDKSSTGRGDS-SSHRHRE 290
+ S S D+ DR RGGD+ T S S R R+
Sbjct: 458 SNNNSSSSTRGSDRYDRERGGDRDRTSESSSRGSDRDRD 496
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 47/158 (29%), Positives = 65/158 (41%)
Query: 147 SHNEQRAANTGGGPQDR-------SSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPN 199
S+N + +GGG R SSR ++ E D R+
Sbjct: 361 SNNNNNGSGSGGGSDRRRNESSSSSSRGDSDRGERERERDRDDRDRSERERSDRDRSERE 420
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDK---RSRRHSDNNEFEARSR-EDHYRRDEKRP 255
+SDR E +RS R D E+ R D R D+ S S NN + +R D Y R+
Sbjct: 421 RSDRSERERSDR-DRSERERSDRSERSDRDKTSSSSSSSNNNSSSSTRGSDRYDRERGGD 479
Query: 256 KRHESESYLR-EDQDRRG-GDKSSTGRGDSSSHRHRER 291
+ SES R D+DR +SS+ G SSS +R
Sbjct: 480 RDRTSESSSRGSDRDRDDYKSRSSSNTGGSSSSLRSDR 517
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 139 TRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEK 171
T G G K+ +Q GGG +S ++K
Sbjct: 116 TPGSGGKYMLTKQTPTGGGGGGSGFNSAKSNQK 148
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR---NN 90
D+ VYVG + + +T +L + FA CG + V ++ DK TG P+GFA++ + + N
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 91 --LNGAQILGRTIRV 103
LNG+ + R ++V
Sbjct: 113 LLLNGSMLHERPLKV 127
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 109 (43.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RNNL 91
++VG + +TE L +F Q G +V V + +DK GKP+ FAFV ++ + N L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 92 NGAQILGRTIRV 103
NG ++ GR I++
Sbjct: 71 NGIKLFGRPIKI 82
Score = 60 (26.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 200 QSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHE 259
+ D +++ ++ H P + H RE + S SD++ + SR+D++ D + P+
Sbjct: 187 RQDTPSQRKGRQNSHPYIP-DRHYSREQRYSDHGSDHH-YRG-SRDDYFYED-RNPEGWS 242
Query: 260 SESYLREDQDRRGGDKSS 277
+ R D +R G +SS
Sbjct: 243 HDYDNRRDSNRDGKWRSS 260
Score = 46 (21.3 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 21/81 (25%), Positives = 30/81 (37%)
Query: 212 HDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLR------ 265
H H R+D S+R N + HY R E+R H S+ + R
Sbjct: 174 HSHSFNQSSSSQWRQDTPSQRKGRQNS-HPYIPDRHYSR-EQRYSDHGSDHHYRGSRDDY 231
Query: 266 --EDQDRRGGDKSSTGRGDSS 284
ED++ G R DS+
Sbjct: 232 FYEDRNPEGWSHDYDNRRDSN 252
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D L
Sbjct: 95 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 154
Query: 92 NGAQILGRTIRVDHV 106
NG ++ GR +RV HV
Sbjct: 155 NGFELAGRPMRVGHV 169
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 113 (44.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 29 HAKYKDSAY--VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86
H KD+ + ++VGG+P+ T+ L F G+I + ++ D+ TGK RG+ FV D
Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
Query: 87 Q 87
+
Sbjct: 62 R 62
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 113 (44.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86
++VGGI D E L F Q G+I + ++ D+G+GK RGFAFV ++D
Sbjct: 58 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 106
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 113 (44.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86
++VGGI D E L F Q G+I + ++ D+G+GK RGFAFV ++D
Sbjct: 62 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 110
>FB|FBgn0262734 [details] [associations]
symbol:Rbp2 "RNA-binding protein 2" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005875 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003743
GeneTree:ENSGT00530000063406 CTD:5948 FlyBase:FBgn0262734
ChiTaRS:RBP2 EMBL:BT088437 RefSeq:NP_996487.1 UniGene:Dm.18619
SMR:Q7KUX7 STRING:Q7KUX7 EnsemblMetazoa:FBtr0074281 GeneID:49809
KEGG:dme:Dmel_CG4429 UCSC:CG4429-RC InParanoid:Q7KUX7
GenomeRNAi:49809 NextBio:839902 Uniprot:Q7KUX7
Length = 358
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 70/283 (24%), Positives = 114/283 (40%)
Query: 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVA 83
D AS + +VG +P L +GD++ +F Q E+ V LV+D+ T + +GF +V
Sbjct: 17 DRASKQLPTEPPFIAFVGNLPQGLVQGDVIKIF-QDFEVKYVRLVKDRETDQFKGFCYVE 75
Query: 84 YEDQRNNLNGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDG 143
+E N + GR I++D ++ G G TRGDG
Sbjct: 76 FETLDNLERALECDGR-IKLDDLSAPLRIDIADRRKNDRPGGGVGG----GNGGMTRGDG 130
Query: 144 CK--F-----------SHNEQRAA-NTGGGPQDRSSRWGHEKFEGFSW-----GKNDSSS 184
+ F S + R TGGG ++ G+ S+ G ND S
Sbjct: 131 GRDGFQKRGPPRQGGSSQSYSRGGPGTGGGGREGGGGSGNRGDSRGSYIDSYGGHNDRSR 190
Query: 185 RATGSGRVALEG-NPNQSDRREEK-RSIRHDHREKPREDHGRREDKRSRRHSDNNEFEAR 242
GSG + G N +DR + R ++ ++P E + R D+ R S N+
Sbjct: 191 GVGGSGAGSGGGMNRGYNDRPANRGRYGSFNNDDRPFERNQDR-DRGQREGSYGNQSRDG 249
Query: 243 SREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSS 285
R +++ R R + H + + + +R G + G G S
Sbjct: 250 DRYNNFNRHRDRERTHYNPN---QQSERPSGGMTGLGGGSGGS 289
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 134 (52.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 33/102 (32%), Positives = 54/102 (52%)
Query: 8 KRIQHINSKEAD-LGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVN 66
K ++ ++ AD I D + +D V+VG +P+ + E + F CG IV V
Sbjct: 258 KALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVR 317
Query: 67 LVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103
+VRD+ TG RGF +V +E+ LN ++++GR +RV
Sbjct: 318 IVRDRVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV 359
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 124 (48.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRNNL---NG 93
V G+ TE DL VF++ G + VN+V D+ TG+ RGFAFV +E D + + NG
Sbjct: 121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 180
Query: 94 AQILGRTIRVDH 105
++ GR IRVD+
Sbjct: 181 MELDGRRIRVDY 192
Score = 42 (19.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 21/83 (25%), Positives = 29/83 (34%)
Query: 169 HEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDK 228
H G G+ S G G G RR+ +D ED+ D
Sbjct: 199 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDY----DY 254
Query: 229 RSRRHSDN---NEFEARSREDHY 248
R RR S + + + +RSR Y
Sbjct: 255 RYRRRSPSPYYSRYRSRSRSRSY 277
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 107 (42.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RNNL 91
++VG + +TE L +F Q G ++ V + +DK GKP+ FAFV ++ + N L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 92 NGAQILGRTIRV 103
NG ++ GR I++
Sbjct: 71 NGIKLYGRPIKI 82
Score = 61 (26.5 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 37/130 (28%), Positives = 54/130 (41%)
Query: 149 NEQRAA--NTGGGPQDRSSRWGHEKFE--GFSWG-KNDSSSRATGSGRVALEGNPNQSDR 203
N QR A N+ ++G + GFS ++ S S S +G P+ S R
Sbjct: 140 NFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPS-SQR 198
Query: 204 REEKRSI-----RHDHREKPREDHGRREDKRSRRHSDNNEFEARSRED--H-Y--RRDEK 253
+ S RH RE+ DHG R +R D+ +E R+ +D H Y RRD
Sbjct: 199 KVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKR--DDFFYEDRNHDDWSHDYDNRRDSS 256
Query: 254 RPKRHESESY 263
R + S +
Sbjct: 257 RDGKWRSSRH 266
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 99 (39.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
++V + D DL F + G IVDV + D T +PRGFA+V +ED R+ NL
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 92 NGAQILGRTIRV 103
+ I GR I +
Sbjct: 72 DRKWICGRQIEI 83
Score = 62 (26.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 198 PNQSDRREEKR---SIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKR 254
PNQ +E + S R+D ++ R R ++R R S + ++ R R R
Sbjct: 93 PNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERR-RSRSRSFDYNYRRSYSPRNRPTGR 151
Query: 255 PKRHESESYLREDQDR 270
P+R S S D DR
Sbjct: 152 PRRSRSHS----DNDR 163
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 107 (42.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RNNL 91
++VG + +TE L +F Q G ++ V + +DK GKP+ FAFV ++ + N L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 92 NGAQILGRTIRV 103
NG ++ GR I++
Sbjct: 71 NGIKLYGRPIKI 82
Score = 61 (26.5 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 37/130 (28%), Positives = 54/130 (41%)
Query: 149 NEQRAA--NTGGGPQDRSSRWGHEKFE--GFSWG-KNDSSSRATGSGRVALEGNPNQSDR 203
N QR A N+ ++G + GFS ++ S S S +G P+ S R
Sbjct: 141 NFQRQAVMNSALRQMSYGGKFGSSPLDQSGFSPSVQSHSHSFNQSSSSQWRQGTPS-SQR 199
Query: 204 REEKRSI-----RHDHREKPREDHGRREDKRSRRHSDNNEFEARSRED--H-Y--RRDEK 253
+ S RH RE+ DHG R +R D+ +E R+ +D H Y RRD
Sbjct: 200 KVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKR--DDFFYEDRNHDDWSHDYDNRRDSS 257
Query: 254 RPKRHESESY 263
R + S +
Sbjct: 258 RDGKWRSSRH 267
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 112 (44.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQ 95
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E + + A+
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 112 (44.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQ 95
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E + + A+
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 69
>TAIR|locus:2124670 [details] [associations]
symbol:AT4G10110 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12831 UniGene:At.2966
UniGene:At.33652 EMBL:BT003697 EMBL:AK119126 IPI:IPI00532832
RefSeq:NP_192749.2 ProteinModelPortal:Q8GW25 SMR:Q8GW25
IntAct:Q8GW25 PaxDb:Q8GW25 PRIDE:Q8GW25 EnsemblPlants:AT4G10110.1
GeneID:826602 KEGG:ath:AT4G10110 TAIR:At4g10110 eggNOG:NOG276964
HOGENOM:HOG000238526 InParanoid:Q8GW25 OMA:SLEYSRR PhylomeDB:Q8GW25
ProtClustDB:CLSN2690837 Genevestigator:Q8GW25 Uniprot:Q8GW25
Length = 173
Score = 110 (43.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87
VY+G + +++ L + Q G ++D+++ RDK T KP+GFAF YE +
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETE 58
Score = 44 (20.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 189 SGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRR 225
SG+ L+ N S R +S+ +H ++ H R
Sbjct: 84 SGQDKLQSNSANSGHRARPQSLAFEHSDRAAYHHLER 120
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 114 (45.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 40/154 (25%), Positives = 69/154 (44%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------L 91
++VGG+ F+ E L F+ G I +V +V+D+ T + RGF F+ + + + +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
NG + GR IRVDH G R++ RG +G G + +
Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGGGFGAH------GRGRSYSRGGGDQGYGSG-RYYDS 120
Query: 152 RAANTG---GGPQDRSSR--WGHEKFEGFSWGKN 180
R G G +D + R G++++ G ++ N
Sbjct: 121 RPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDN 154
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 88 (36.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89
++V + E L VF++ G+I + LVRD TG +G+AF+ Y+++R+
Sbjct: 53 LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERS 104
Score = 81 (33.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 223 GRREDKRSRRHSDNNEFEARSRE-DHYRRDEKR-PKRHESESYLREDQDRRGGDKSSTGR 280
G+RE KR R S +++R+R+ DH R EKR +R S +L D +R + +
Sbjct: 179 GKRE-KRERSRSRERHWDSRTRDRDHDRNREKRWQEREPSRVWLESDWERERDFRDDRAK 237
Query: 281 GDSSSHRHR 289
G R +
Sbjct: 238 GREKRDRSK 246
Score = 60 (26.2 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 202 DRREEKRSI-RH-DHREKPREDHGRREDKR-SRRHSDNNEFEAR-SREDHYRRDEK--RP 255
++RE RS RH D R + R DH R +KR R E+ RE +R D R
Sbjct: 182 EKRERSRSRERHWDSRTRDR-DHDRNREKRWQEREPSRVWLESDWERERDFRDDRAKGRE 240
Query: 256 KRHESE 261
KR S+
Sbjct: 241 KRDRSK 246
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 89 (36.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-N-----L 91
+++G + ++++E L F G+I V ++ DK KPRG+AF+ +E ++ N
Sbjct: 100 LFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNL-KPRGYAFIEFEHTKSMNDAYKLA 158
Query: 92 NGAQILGRTIRVD 104
+G +I R I VD
Sbjct: 159 DGKKIENRRILVD 171
Score = 87 (35.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRH-SDNNEFEARSREDHYRRDEKRPKR 257
N D + S D++ +DH RR KR RRH S +E R H RRD R R
Sbjct: 239 NDDDEDDGISSTMRDYKHHRSDDH-RRGSKRDRRHRSRRSESSDRHHHKHRRRDRSRDDR 297
Query: 258 HES--ESYLREDQ-DR 270
+ + + R D+ DR
Sbjct: 298 DRNYYDRHGRHDKHDR 313
Score = 87 (35.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 30/141 (21%), Positives = 60/141 (42%)
Query: 134 QRGECTRGDGCKFSHNEQRAANTGGGPQDRS--SRWG-HEKFEGFS-WGKNDSSSRATGS 189
+R R + H++ R + +DR+ R G H+K + + +ND R
Sbjct: 270 RRHRSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRHDKYDRNDKYDRHDKY 329
Query: 190 GRVALEGNPNQSDRREE-KRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHY 248
R ++ DR ++ R RHD + R D + D+ + H+ +N ++ +++D
Sbjct: 330 DRHDKYDKHDRYDRHDKYDRHNRHDKYD--RHDRHDKYDRHDKHHNSDNPYDNSTKDDIR 387
Query: 249 RRDEKRPKRHESESYLREDQD 269
+ +E +H RE +
Sbjct: 388 KENEINDIQHNDYENNREHNE 408
Score = 82 (33.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 30/111 (27%), Positives = 43/111 (38%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNE 238
++D R + R SDR K H R++ R+D R R RH ++
Sbjct: 258 RSDDHRRGSKRDRRHRSRRSESSDRHHHK----HRRRDRSRDDRDRNYYDRHGRHDKHDR 313
Query: 239 FEARSREDHYRRDEKRPKRHESESYLREDQ-DRRGGDKSSTGRGDSSSHRH 288
+ R D Y R +K RH+ Y + D+ DR DK RH
Sbjct: 314 HDKYDRNDKYDRHDKYD-RHDK--YDKHDRYDRH--DKYDRHNRHDKYDRH 359
Score = 75 (31.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 26/104 (25%), Positives = 47/104 (45%)
Query: 196 GNPNQSDRREE-KRSIRHDHREK-PRED----HGR--REDKRSRRHSDNNEFEARSREDH 247
G ++ DR ++ R+ ++D +K R D H R R DK R H+ +++++ R D
Sbjct: 306 GRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDRHDKYDR-HNRHDKYDRHDRHDK 364
Query: 248 YRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHR-HRE 290
Y R +K +D R+ + + D ++R H E
Sbjct: 365 YDRHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHNE 408
Score = 71 (30.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/93 (25%), Positives = 35/93 (37%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 258
N+ R +K+ ++ P + +D S R D +RR KR +RH
Sbjct: 213 NKDKYRNDKKRSDELYKNVPLYNERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDRRH 272
Query: 259 ES---ESYLREDQDRRGGDKSSTGRGDSSSHRH 288
S ES R R D+S R + RH
Sbjct: 273 RSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRH 305
Score = 69 (29.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 30/107 (28%), Positives = 44/107 (41%)
Query: 194 LEGNPNQSDRREEKRSIRHD-------HREKPREDHGRREDKRSRRHSDNNEFEARSRED 246
L G + EEK+ I H+ +++K R D +R D+ + NE ED
Sbjct: 186 LGGGKGPARGSEEKKKIIHNINWTALINKDKYRNDK-KRSDELYKNVPLYNERNNDDDED 244
Query: 247 HYRRDEKRP-KRHESESYLR-EDQDRRGGDKSSTGRGDSSSHRHRER 291
R K H S+ + R +DRR + S D H+HR R
Sbjct: 245 DGISSTMRDYKHHRSDDHRRGSKRDRRHRSRRSES-SDRHHHKHRRR 290
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 89 (36.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-N-----L 91
+++G + ++++E L F G+I V ++ DK KPRG+AF+ +E ++ N
Sbjct: 100 LFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNL-KPRGYAFIEFEHTKSMNDAYKLA 158
Query: 92 NGAQILGRTIRVD 104
+G +I R I VD
Sbjct: 159 DGKKIENRRILVD 171
Score = 87 (35.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRH-SDNNEFEARSREDHYRRDEKRPKR 257
N D + S D++ +DH RR KR RRH S +E R H RRD R R
Sbjct: 239 NDDDEDDGISSTMRDYKHHRSDDH-RRGSKRDRRHRSRRSESSDRHHHKHRRRDRSRDDR 297
Query: 258 HES--ESYLREDQ-DR 270
+ + + R D+ DR
Sbjct: 298 DRNYYDRHGRHDKHDR 313
Score = 87 (35.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 30/141 (21%), Positives = 60/141 (42%)
Query: 134 QRGECTRGDGCKFSHNEQRAANTGGGPQDRS--SRWG-HEKFEGFS-WGKNDSSSRATGS 189
+R R + H++ R + +DR+ R G H+K + + +ND R
Sbjct: 270 RRHRSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRHDKYDRNDKYDRHDKY 329
Query: 190 GRVALEGNPNQSDRREE-KRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHY 248
R ++ DR ++ R RHD + R D + D+ + H+ +N ++ +++D
Sbjct: 330 DRHDKYDKHDRYDRHDKYDRHNRHDKYD--RHDRHDKYDRHDKHHNSDNPYDNSTKDDIR 387
Query: 249 RRDEKRPKRHESESYLREDQD 269
+ +E +H RE +
Sbjct: 388 KENEINDIQHNDYENNREHNE 408
Score = 82 (33.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 30/111 (27%), Positives = 43/111 (38%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNE 238
++D R + R SDR K H R++ R+D R R RH ++
Sbjct: 258 RSDDHRRGSKRDRRHRSRRSESSDRHHHK----HRRRDRSRDDRDRNYYDRHGRHDKHDR 313
Query: 239 FEARSREDHYRRDEKRPKRHESESYLREDQ-DRRGGDKSSTGRGDSSSHRH 288
+ R D Y R +K RH+ Y + D+ DR DK RH
Sbjct: 314 HDKYDRNDKYDRHDKYD-RHDK--YDKHDRYDRH--DKYDRHNRHDKYDRH 359
Score = 75 (31.5 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 26/104 (25%), Positives = 47/104 (45%)
Query: 196 GNPNQSDRREE-KRSIRHDHREK-PRED----HGR--REDKRSRRHSDNNEFEARSREDH 247
G ++ DR ++ R+ ++D +K R D H R R DK R H+ +++++ R D
Sbjct: 306 GRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDRHDKYDR-HNRHDKYDRHDRHDK 364
Query: 248 YRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHR-HRE 290
Y R +K +D R+ + + D ++R H E
Sbjct: 365 YDRHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHNE 408
Score = 71 (30.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/93 (25%), Positives = 35/93 (37%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 258
N+ R +K+ ++ P + +D S R D +RR KR +RH
Sbjct: 213 NKDKYRNDKKRSDELYKNVPLYNERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDRRH 272
Query: 259 ES---ESYLREDQDRRGGDKSSTGRGDSSSHRH 288
S ES R R D+S R + RH
Sbjct: 273 RSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRH 305
Score = 69 (29.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 30/107 (28%), Positives = 44/107 (41%)
Query: 194 LEGNPNQSDRREEKRSIRHD-------HREKPREDHGRREDKRSRRHSDNNEFEARSRED 246
L G + EEK+ I H+ +++K R D +R D+ + NE ED
Sbjct: 186 LGGGKGPARGSEEKKKIIHNINWTALINKDKYRNDK-KRSDELYKNVPLYNERNNDDDED 244
Query: 247 HYRRDEKRP-KRHESESYLR-EDQDRRGGDKSSTGRGDSSSHRHRER 291
R K H S+ + R +DRR + S D H+HR R
Sbjct: 245 DGISSTMRDYKHHRSDDHRRGSKRDRRHRSRRSES-SDRHHHKHRRR 290
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 132 (51.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 26/85 (30%), Positives = 51/85 (60%)
Query: 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVA 83
D AS ++ + + V++G + +D+++ + FA CG++V V +VRD+ +G +GF +V
Sbjct: 240 DSASKNSLHDNKRSVFLGNLAYDISDSAVREHFADCGDVVAVRIVRDRQSGMGKGFGYVL 299
Query: 84 YEDQRN-----NLNGAQILGRTIRV 103
+E+ LN + ++GR +RV
Sbjct: 300 FENTDAVHLALKLNNSDLMGRKLRV 324
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 132 (51.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 25 DASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY 84
D + +D V+VG +P+ + E + F CG I+ V +VRDK TG +GF +V +
Sbjct: 254 DLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLF 313
Query: 85 EDQRN-----NLNGAQILGRTIRV 103
E+ + LN ++++GR +RV
Sbjct: 314 ENTDSVHLALKLNNSELMGRKLRV 337
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 120 (47.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 11 QHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD 70
Q ++ + +L S + A Y + ++VGG+P LT+ + F G + DV ++ D
Sbjct: 86 QQVSGRTGNLNTSRSSGGDA-YNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYD 144
Query: 71 KGTGKPRGFAFVAYEDQ 87
+ T +PRGF FV+++ +
Sbjct: 145 QATNRPRGFGFVSFDSE 161
Score = 111 (44.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86
D ++VGGI ++ E L F GE+ ++RDK TG+PRGF FV + D
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
Score = 51 (23.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSR 185
S+N GGG D S W + +G+ G ND R
Sbjct: 372 SNNPGSGGYMGGGYGDGS--WRSDPSQGYGGGYNDGQGR 408
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 132 (51.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 25 DASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY 84
D + +D V+VG +P+ + E + F CG I+ V +VRDK TG +GF +V +
Sbjct: 276 DLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLF 335
Query: 85 EDQRN-----NLNGAQILGRTIRV 103
E+ + LN ++++GR +RV
Sbjct: 336 ENTDSVHLALKLNNSELMGRKLRV 359
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 117 (46.2 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89
AK +++ V+VGG+P D +E DL + F Q G++ D+ DK T R FAF+ +E++ +
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEES 163
Score = 50 (22.7 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 168 GHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPR 219
G+ +G + N SS+ GSG + GN + D ++ + R + +PR
Sbjct: 243 GYYGQQGAAHHNNSGSSQGYGSGYQSFAGNNSGFDY-QQAQGARQGNNGQPR 293
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 130 (50.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86
D +++GGI +D E L F+ GE++ V ++R+K TG+PRGF FVA+ D
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
Score = 39 (18.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 173 EGFSWGKNDSS-SRATGSGRVA-LEGN-PN 199
+G+ +G NDSS + G V GN PN
Sbjct: 333 QGYGYGGNDSSYGTPSAYGAVGGRSGNMPN 362
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 120 (47.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 34 DSAY--VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNL 91
D+ Y +YVGG+P++ L + F Q G+I+ VN+V D+ TG+ G+ FV + D +
Sbjct: 48 DTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESAT 107
Query: 92 NGAQ 95
Q
Sbjct: 108 RACQ 111
>ZFIN|ZDB-GENE-030131-1495 [details] [associations]
symbol:zrsr2 "zinc finger (CCCH type), RNA-binding
motif and serine/arginine rich 2" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
ZFIN:ZDB-GENE-030131-1495 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 CTD:8233 EMBL:CR848805 IPI:IPI00899441
RefSeq:XP_001920562.1 UniGene:Dr.116918 UniGene:Dr.77318
Ensembl:ENSDART00000081319 GeneID:100005490 KEGG:dre:100005490
NextBio:20786710 Uniprot:E7F2A1
Length = 635
Score = 134 (52.2 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 48/163 (29%), Positives = 72/163 (44%)
Query: 129 VCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATG 188
+C F R +C +G C F H + N DR ++ GFS S R
Sbjct: 324 ICGLFDRRKCPKGKHCNFLHVFRNPDNEFW-EADRDLHMSPDRGGGFS--ARHMSGR--- 377
Query: 189 SGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHY 248
G + GN S+R + +R+ R H + GRR R RR S + E +RSRE
Sbjct: 378 DGMWSQRGN--SSERFQRRRTDRRSHSRERYSYRGRRSRSRERR-SRSRERRSRSRERRS 434
Query: 249 RRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 291
R E++ + E +S R + R+ ++S R S+S R + R
Sbjct: 435 RSRERQNRNRERQSRSRSREKRKS--ENSIRR--STSQREQSR 473
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 110 (43.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89
+++GG+ +D T+ DL F++ GE+VD L D TG+ RGF FV +++ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 52
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 110 (43.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQIL 97
+V G+ D E DL +F++ G ++D ++ D+ TGK R F FV +E++++ + I+
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 131 (51.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 33 KDSAYVYVGGIPFDLTEGDLLAVF-AQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNL 91
KD A ++VG +PF++TE L+ F AQ G + V +VRDK TGK +GFAFV ++ Q +++
Sbjct: 244 KDMA-IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK-QDSSV 301
Query: 92 NGAQILGRTIRVD 104
+ A + TI+++
Sbjct: 302 SLALSM-ETIKME 313
Score = 37 (18.1 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 195 EGNPNQSDRREEKRSIRHDHREKPREDHGR 224
E Q+DRR K+S + +K GR
Sbjct: 362 ERTTEQNDRRALKKSAKKAIAKKKAAKKGR 391
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 129 (50.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 61/262 (23%), Positives = 107/262 (40%)
Query: 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-NL 91
K+ + ++VGG+ ++T+ DL F++ G+I+D ++ ++ TG+ RGF F+ + D+R +
Sbjct: 4 KEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Query: 92 NGAQILGRTIRVDHVAXXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQ 151
+ ++ GR D V G G G G F
Sbjct: 64 SIREMHGRDFG-DRVISVNRAEPKLGRDDGESHGSRG---GRDSGYSIAGKG-SFGGGGG 118
Query: 152 RAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRV-ALEGNPNQSDRREEKRSI 210
G + R GH + S G S R A G+ + DR ++
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRD-- 176
Query: 211 RHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHES--ESYLREDQ 268
R+ RE+ +D R D +R + + F+ SRE + RD R+ + + + D+
Sbjct: 177 RYVDRERYIDD---RYDGAAR-YGARDRFD--SREAYIPRDRYASDRYAAPADRFAGGDR 230
Query: 269 DRRGGDKSSTGRGDSSSHRHRE 290
RG D+ G D + R+
Sbjct: 231 YSRGSDRYPPGSYDKARSFERD 252
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 124 (48.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 59/247 (23%), Positives = 88/247 (35%)
Query: 51 DLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NLNGAQILGRTIRVDHVA 107
DL Q GE+ + KG FV+Y D + L+G ++ GR IR+ V
Sbjct: 119 DLKDYMRQAGEVTYADA--HKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL--VE 174
Query: 108 XXXXXXXXXXXXXXXXXXXXGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRW 167
R +R K SH++ R+ + G SR
Sbjct: 175 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSR- 233
Query: 168 GHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRRED 227
+ + S K + S R+ R A + D+ EEK D+ K + R
Sbjct: 234 --SRSQSRSRSKKEKS-RSRSHSRSADKRRSKSKDQAEEKVQ-NSDNTGKSKSRSPSRHK 289
Query: 228 KRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDR-RGGDKS-STGRGDSSS 285
+S+ S + E + R + K E LR + R RGG +S S R S
Sbjct: 290 SKSKSRSRSQERGVEEKRGSGSRSRSKEKSRSQEKSLRRSRSRSRGGSRSRSRSRSKSKD 349
Query: 286 HRH-RER 291
R R+R
Sbjct: 350 KRKGRKR 356
Score = 101 (40.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 151 QRAANTGGGPQDRSSRW-GHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQ--SDRREEK 207
Q + NTG SR K S + R +GS + E + +Q S RR
Sbjct: 272 QNSDNTGKSKSRSPSRHKSKSKSRSRSQERGVEEKRGSGSRSRSKEKSRSQEKSLRRSRS 331
Query: 208 RSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRE-DHYRRDEKRPKRHESESYLRE 266
RS R R + R + +DKR R E +RSR R KR + +S+S +
Sbjct: 332 RS-RGGSRSRSRS-RSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKSSSSK 389
Query: 267 DQDRRGGDKSSTGRGDSSSHRHRER 291
+ + D+S + S + RER
Sbjct: 390 KKKKEDTDRSQSRSRSRSGSKERER 414
Score = 93 (37.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 37/149 (24%), Positives = 55/149 (36%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
S +++R G RS EK S SR+ G R D+R+
Sbjct: 296 SRSQERGVEEKRGSGSRSR--SKEKSRSQEKSLRRSRSRSRGGSRSRSRSRSKSKDKRKG 353
Query: 207 KRSIRHDHREKPRE-DHGRREDKR-SRRHSDNNEFEARSREDHYR---RDEKRPKRHESE 261
++ R + R + R R KR S+R S ++ + + +ED R R R E E
Sbjct: 354 RKRSREESRSRSRSRSKSERSRKRGSKRDSKSSSSKKKKKEDTDRSQSRSRSRSGSKERE 413
Query: 262 SYLREDQDRRG-GDKSSTGRGDSSSHRHR 289
E R G G+ G + R R
Sbjct: 414 RTKSESGQREGRGENEDAGTVQKTRSRSR 442
Score = 88 (36.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 39/155 (25%), Positives = 61/155 (39%)
Query: 147 SHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRREE 206
S + R+ + +++S H + S K S S+ +V N +S R
Sbjct: 230 SKSRSRSQSRSRSKKEKSRSRSHSR----SADKRRSKSKDQAEEKVQNSDNTGKSKSRSP 285
Query: 207 KRSIRHDHREKPREDHGRR--EDKRSRRHSDNNEFEARSREDHYRRDEKRPK---RHESE 261
R H + K R R E+KR ++ ++RS+E RR R + R S
Sbjct: 286 SR---HKSKSKSRSRSQERGVEEKRGSGSRSRSKEKSRSQEKSLRRSRSRSRGGSRSRSR 342
Query: 262 SYLREDQDRRGGDKS-----STGRGDSSSHRHRER 291
S + R+G +S S R S S R R+R
Sbjct: 343 SRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKR 377
Score = 86 (35.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 32/156 (20%), Positives = 70/156 (44%)
Query: 131 RAFQRG-ECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGS 189
R+ +RG E RG G + S +++++ + Q++S R + G S ++ S S++
Sbjct: 297 RSQERGVEEKRGSGSR-SRSKEKSRS-----QEKSLRRSRSRSRGGSRSRSRSRSKSKDK 350
Query: 190 GRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDHYR 249
R + + +S R RS R++ + + + ++ D + ++RSR
Sbjct: 351 -RKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKSSSSKKKKKEDTDRSQSRSRSRSGS 409
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSS 285
++ +R K + R + + G + + R S+S
Sbjct: 410 KERERTKSESGQREGRGENEDAGTVQKTRSRSRSNS 445
Score = 74 (31.1 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VY+G + + E D+ F G+I++V+L G+ FV ++D R+ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55
Query: 92 NGAQILGRTIRVDH 105
NG + G + V+H
Sbjct: 56 NGKDLCGERVIVEH 69
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 108 (43.1 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RNNL 91
++VG + +TE L +F Q G ++ V + +DK GKP+ FAFV ++ + N L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 92 NGAQILGRTIRV 103
NG ++ GR I++
Sbjct: 71 NGIKLFGRPIKI 82
Score = 57 (25.1 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 24/92 (26%), Positives = 40/92 (43%)
Query: 199 NQSDRREEKRSIRHDHREKPREDHGRREDK---RSRRHSDNNEFEAR-SREDHYRRDEKR 254
NQS + ++ R+ H D+ R +R+SD ++ R +R+D + D
Sbjct: 179 NQSSSSQWRQDTPSSQRKVRLNSHPYVMDRHYSREQRYSDLSDHHYRGNRDDFFYED--- 235
Query: 255 PKRHESESYLREDQDRRGGDKSSTGRGDSSSH 286
+ H+ S+ D D R D G+ SS H
Sbjct: 236 -RNHDGWSH---DYDNRR-DSGRNGKWRSSRH 262
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 89 (36.4 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNG 93
+ + + T DL F + G+I DV++ RDK + + +GF FV + ++R+ +G
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 94 AQILGRTIRV 103
+ GR +RV
Sbjct: 83 KLVDGRELRV 92
Score = 74 (31.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 28/99 (28%), Positives = 45/99 (45%)
Query: 149 NEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQS-DRREEK 207
+++R GGG + R SR + + ++ S R+ R + S DRR+
Sbjct: 101 SDERGGRGGGGGR-RRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNS 159
Query: 208 RSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRED 246
RS PRED G +++RSR S + +RSR +
Sbjct: 160 RS--RSRSPPPRED-GSPKERRSRSRSASRS-PSRSRSN 194
Score = 70 (29.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 216 EKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG-D 274
++P ++ G R RR S + RSR Y R + P+R S + +DRR D
Sbjct: 98 DRPSDERGGRGGGGGRRRSRSPR--RRSRSPRYSRS-RSPRRSRSRTRSPPSRDRRDSPD 154
Query: 275 KSSTGRGDSSSHRHRE 290
+ R S S RE
Sbjct: 155 RRDNSRSRSRSPPPRE 170
Score = 69 (29.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 26/87 (29%), Positives = 31/87 (35%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRRED--KRSRRHSDN 236
K D S G GR G R RS R+ PR R R RR S +
Sbjct: 96 KYDRPSDERG-GRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPD 154
Query: 237 NEFEARSRE-DHYRRDEKRPKRHESES 262
+RSR R++ PK S S
Sbjct: 155 RRDNSRSRSRSPPPREDGSPKERRSRS 181
Score = 67 (28.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 23/71 (32%), Positives = 29/71 (40%)
Query: 223 GRREDKRSRRHSDNNEFEARSREDHYRRDEKR--PKRHESESYLREDQDRRGGDKSSTGR 280
GRR + RR S + + +RSR R R P R +S R D R +S R
Sbjct: 112 GRRRSRSPRRRSRSPRY-SRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSR-SRSRSPPPR 169
Query: 281 GDSSSHRHRER 291
D S R R
Sbjct: 170 EDGSPKERRSR 180
Score = 67 (28.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKP-REDHGRREDKRSRRHSDNN 237
++ S R + S R + +P +S R R D R+ P R D+ R + D +
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR-DRRDSPDRRDNSRSRSRSPPPREDGS 173
Query: 238 EFEARSREDHYRRDEKRPKRHESES 262
E RSR R + P R S S
Sbjct: 174 PKERRSRS---RSASRSPSRSRSNS 195
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 89 (36.4 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNG 93
+ + + T DL F + G+I DV++ RDK + + +GF FV + ++R+ +G
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 94 AQILGRTIRV 103
+ GR +RV
Sbjct: 83 KLVDGRELRV 92
Score = 74 (31.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 28/99 (28%), Positives = 45/99 (45%)
Query: 149 NEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQS-DRREEK 207
+++R GGG + R SR + + ++ S R+ R + S DRR+
Sbjct: 101 SDERGGRGGGGGR-RRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNS 159
Query: 208 RSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSRED 246
RS PRED G +++RSR S + +RSR +
Sbjct: 160 RS--RSRSPPPRED-GSPKERRSRSRSASRS-PSRSRSN 194
Score = 70 (29.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 216 EKPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGG-D 274
++P ++ G R RR S + RSR Y R + P+R S + +DRR D
Sbjct: 98 DRPSDERGGRGGGGGRRRSRSPR--RRSRSPRYSRS-RSPRRSRSRTRSPPSRDRRDSPD 154
Query: 275 KSSTGRGDSSSHRHRE 290
+ R S S RE
Sbjct: 155 RRDNSRSRSRSPPPRE 170
Score = 69 (29.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 26/87 (29%), Positives = 31/87 (35%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRRED--KRSRRHSDN 236
K D S G GR G R RS R+ PR R R RR S +
Sbjct: 96 KYDRPSDERG-GRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPD 154
Query: 237 NEFEARSRE-DHYRRDEKRPKRHESES 262
+RSR R++ PK S S
Sbjct: 155 RRDNSRSRSRSPPPREDGSPKERRSRS 181
Score = 67 (28.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 23/71 (32%), Positives = 29/71 (40%)
Query: 223 GRREDKRSRRHSDNNEFEARSREDHYRRDEKR--PKRHESESYLREDQDRRGGDKSSTGR 280
GRR + RR S + + +RSR R R P R +S R D R +S R
Sbjct: 112 GRRRSRSPRRRSRSPRY-SRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSR-SRSRSPPPR 169
Query: 281 GDSSSHRHRER 291
D S R R
Sbjct: 170 EDGSPKERRSR 180
Score = 67 (28.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 179 KNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKP-REDHGRREDKRSRRHSDNN 237
++ S R + S R + +P +S R R D R+ P R D+ R + D +
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR-DRRDSPDRRDNSRSRSRSPPPREDGS 173
Query: 238 EFEARSREDHYRRDEKRPKRHESES 262
E RSR R + P R S S
Sbjct: 174 PKERRSRS---RSASRSPSRSRSNS 195
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 131 (51.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 8 KRIQHINSKEAD-LGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVN 66
K ++ ++ AD I D + +D V+VG +P+ + E + F CG +V V
Sbjct: 254 KALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSVVAVR 313
Query: 67 LVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103
+VRD TG RGF +V +E+ LN ++++GR +RV
Sbjct: 314 IVRDPVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRV 355
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED-----QRNNLNG 93
++G + FD T GD+ +FA CG + +V +V DK T P+GF +V +E + +L+G
Sbjct: 85 HIGNLSFDATSGDISDLFADCG-VTNVRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSG 143
Query: 94 AQILGRTIRV 103
A + GR+IRV
Sbjct: 144 ATLQGRSIRV 153
>UNIPROTKB|E1C591 [details] [associations]
symbol:PPIG "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR002130 InterPro:IPR020892 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 GO:GO:0005634
GO:GO:0005737 GO:GO:0006457 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00550000074595 OMA:NKKFDHE
EMBL:AADN02020271 IPI:IPI00602148 Ensembl:ENSGALT00000015996
Uniprot:E1C591
Length = 747
Score = 134 (52.2 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 49/160 (30%), Positives = 72/160 (45%)
Query: 139 TRGDGCKFSHNEQRAANTGGGPQDRSSRWG--HEKFEGFSW------GKNDSSSRATGSG 190
+RG + S +++R+ G +R R EK + S GK+ SSSR
Sbjct: 502 SRGRDKERSRSKERSRRAGSRSNERDHRKSKDREKHKSRSREREHARGKHSSSSRTRERS 561
Query: 191 RVALEGNPNQSDRREEKRSIRHDH-REKPREDHGRREDKRSRRHSDNNEFEARSREDHYR 249
+ G +S R+ RS ++ R + RE RR R RR + + R RE+ R
Sbjct: 562 KSRDRGRRGRSRSRDRDRSRSKEYSRNRDRESRRRRSRSRERRGTPDRY---RGRENRRR 618
Query: 250 RDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHR 289
R+ + +R ES+S RE R +SS R DS S R R
Sbjct: 619 RNSRSSEREESQSRNRERYSNRES-RSSYKRNDSESQRKR 657
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 131 (51.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 92 NGAQILGRTIRVDHV 106
NG ++ GR +RV HV
Sbjct: 325 NGFELAGRPMRVGHV 339
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 131 (51.2 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNL 91
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D L
Sbjct: 266 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 325
Query: 92 NGAQILGRTIRVDHV 106
NG ++ GR +RV HV
Sbjct: 326 NGFELAGRPMRVGHV 340
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 129 (50.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY---EDQR---NNL 91
+YVGG D+TE L+A F G++V +++ D +GK RGF FV + ED +N+
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 92 NGAQILGRTIRVD 104
N +++ G+TIRV+
Sbjct: 73 NESELFGKTIRVN 85
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 129 (50.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY---EDQR---NNL 91
+YVGG D+TE L+A F G++V +++ D +GK RGF FV + ED +N+
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 92 NGAQILGRTIRVD 104
N +++ G+TIRV+
Sbjct: 73 NESELFGKTIRVN 85
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 33/130 (25%), Positives = 45/130 (34%)
Query: 142 DGCKFSHNEQRA--ANTGGGPQDRSSRWGH--EKFEGFSWGKNDSSSRATGSGRVALEGN 197
DG E R A G P SR G ++ G +G+ S R R
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR 135
Query: 198 PNQSDRREEKRS-IRHDHREKPREDHGRREDKRSRRHSDN-NEFEARSREDHYRRDEKRP 255
R RS R R + R R +RS+ S + + +RSR R
Sbjct: 136 SRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPA 195
Query: 256 KRHESESYLR 265
+ ES+S R
Sbjct: 196 SKRESKSRSR 205
Score = 69 (29.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 33/120 (27%), Positives = 46/120 (38%)
Query: 147 SHNEQRAA---NTGGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDR 203
SH+ +R GGG R SR + S ++ S SR+ + + +S
Sbjct: 98 SHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRS 157
Query: 204 REEKRSIRHDHREKPREDHGRREDKRSRRHS-DNNEFEARSREDHYR-RDEKRPKRHESE 261
R +S R R K + R RSR S + A RE R R + PK E E
Sbjct: 158 RSTSKS-RSARRSKSKSSSVSRSRSRSRSRSRSRSPPPASKRESKSRSRSKSPPKSPEEE 216
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 58 (25.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/75 (25%), Positives = 27/75 (36%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGSSG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
Score = 57 (25.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/89 (29%), Positives = 36/89 (40%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPK-RHESESYL 264
RS R R + R R RSR R + +RSR R +R K + S S
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRS 179
Query: 265 REDQDRRGGDKSS--TGRGDSSSHRHRER 291
R R +S T + +S+S R R +
Sbjct: 180 RSRSRSRSRSRSPPPTSKRESNS-RSRSK 207
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
RS R R + R R RSR R + +RSR R +R K +S S R
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS-KSSSVSR 178
Query: 266 EDQDRRGGDKS 276
R +S
Sbjct: 179 SRSRSRSRSRS 189
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
RS R R + R R RSR R + +RSR R +R K +S S R
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS-KSSSVSR 178
Query: 266 EDQDRRGGDKS 276
R +S
Sbjct: 179 SRSRSRSRSRS 189
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
RS R R + R R RSR R + +RSR R +R K +S S R
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS-KSSSVSR 178
Query: 266 EDQDRRGGDKS 276
R +S
Sbjct: 179 SRSRSRSRSRS 189
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
RS R R + R R RSR R + +RSR R +R K +S S R
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS-KSSSVSR 178
Query: 266 EDQDRRGGDKS 276
R +S
Sbjct: 179 SRSRSRSRSRS 189
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRRE--DKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 56 (24.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + RSR RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
RS R R + R R RSR R + +RSR R +R K +S S R
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS-KSSSVSR 178
Query: 266 EDQDRRGGDKS 276
R +S
Sbjct: 179 SRSRSRSRSRS 189
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 93 (37.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------LNG 93
V + + + L VF + G + DV + RD+ T + RGFAFV + D+R+ ++G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 94 AQILGRTIRV 103
A + GR +RV
Sbjct: 78 AVLDGRELRV 87
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 222 HGRR--EDKRSRRHSDNNEFEARSRE-DHYRRDEKRPK-RHESESYLREDQDRRGGDKSS 277
+GRR +R RR + +RSR Y R + R + R S S + RR KSS
Sbjct: 115 YGRRTRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSS 174
Query: 278 TGRGDSSSHRHRER 291
+ S R R R
Sbjct: 175 SVSRSRSRSRSRSR 188
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 208 RSIRHDHREKPREDHGRREDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLR 265
RS R R + R R RSR R + +RSR R +R K +S S R
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKS-KSSSVSR 178
Query: 266 EDQDRRGGDKS 276
R +S
Sbjct: 179 SRSRSRSRSRS 189
Score = 53 (23.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 18/75 (24%), Positives = 26/75 (34%)
Query: 217 KPREDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKS 276
+P + H R RR+ + R+R RR + R S S R R
Sbjct: 94 RPPDSHHSRRGPPPRRYGGGG-YGRRTRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR 152
Query: 277 STGRGDSSSHRHRER 291
+ R S+S R
Sbjct: 153 TRSRSRSTSKSRSAR 167
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 119 (46.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 15 SKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTG 74
S E++ G DAS + + D +++GG+ +D T+ DL F++ GE+VD L D TG
Sbjct: 27 SAESE-GAKIDASKNEE--DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG 83
Query: 75 KPRGFAFVAYEDQRN 89
+ RGF FV +++ +
Sbjct: 84 RSRGFGFVLFKESES 98
Score = 46 (21.3 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 151 QRAANTGGGPQDRSSRWGHEKFEGFS--WGKNDSSSRATGSGRVALEGNPNQS 201
Q N G Q G++ + G++ +G D S++ +G G+V+ G S
Sbjct: 248 QGYGNYGYNSQGYGGYGGYD-YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNS 299
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 109 (43.4 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---N 90
+V+VG + ++T D+ + FA G+I D +V+D TGK +G+ FV++ D N +
Sbjct: 59 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 118
Query: 91 LNGAQILGRTIRVD 104
+ G + GR IR +
Sbjct: 119 MGGQWLGGRQIRTN 132
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 109 (43.4 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQIL 97
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E+ + N A+ +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 98 GRTIRVD 104
+ VD
Sbjct: 69 NGKMMVD 75
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 132 (51.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGA--- 94
++VGG+ + TE D F Q G ++D L+ DK TG+PRGF FV + D + A
Sbjct: 196 IFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTF-DSEAAVEAALSR 254
Query: 95 --QILGRTIRV 103
+ILG+TI V
Sbjct: 255 PLEILGKTIEV 265
Score = 114 (45.2 bits), Expect = 0.00086, P = 0.00086
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR 88
K+ +++GG+ ++ T+ L F+Q GE+ + ++RD TG+ RGF F+ ++D +
Sbjct: 107 KEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 162
WARNING: HSPs involving 414 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 291 271 0.00098 114 3 11 23 0.40 34
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 664
No. of states in DFA: 608 (65 KB)
Total size of DFA: 213 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.48u 0.08s 30.56t Elapsed: 00:00:03
Total cpu time: 30.53u 0.08s 30.61t Elapsed: 00:00:03
Start: Fri May 10 20:37:14 2013 End: Fri May 10 20:37:17 2013
WARNINGS ISSUED: 2