BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022814
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/178 (76%), Positives = 156/178 (87%), Gaps = 7/178 (3%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLTQVK +Q IN++E+DLGISD+ASWHAKYK+SAYVYVGGIPFDLTEGDLLAVF+Q G
Sbjct: 1 MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDHVAKYKKKEE 114
EIVDVNL+RDKGTGK +GFAF+AYEDQR +NLNGA +LGRTI+VDH YKK EE
Sbjct: 61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120
Query: 115 EDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEK 171
EDEETR++ RE RGVCRAFQRGECTRGD CKFSH+E+RAANTG G +DRSS+W H+K
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDK 178
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/178 (71%), Positives = 149/178 (83%), Gaps = 7/178 (3%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLTQVKR Q IN KEA LGI +D SWHAK+KDSAYV+VGGIP+DLTEGDLLAVFAQ G
Sbjct: 1 MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDHVAKYKKKEE 114
E+VDVNLVRDKGTGK +GFAF+AYEDQR +NLNGA++LGR +RVDHV+KYKKKEE
Sbjct: 61 EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEE 120
Query: 115 EDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRS-SRWGHEK 171
EDEE Q+ RE RGVC AFQ+GEC RG C++SH+EQR ANTG G ++ S +RW H++
Sbjct: 121 EDEEELQKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDR 178
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 164 bits (415), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 9/130 (6%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG++D SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDHVAKY---KK 111
EIV++NLVRDK TGK +GF F+ YEDQR +N NG +I GRTIRVDHV+ Y K
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120
Query: 112 KEEEDEETRQ 121
EE D+ TRQ
Sbjct: 121 SEEIDDVTRQ 130
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 164 bits (414), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 102/136 (75%), Gaps = 7/136 (5%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+++ SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDHVAKYKKKEE 114
EIV++NLVRDK TGK +GF F+ YEDQR +N NG +I GRTIRVDHVA Y+ +E
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQE 120
Query: 115 -EDEETRQRMREERGV 129
ED + R +E+G
Sbjct: 121 SEDVDDVTRELQEKGC 136
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 7/136 (5%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+++ SWH++YK SA+++VGG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDHVAKYKKKEE 114
EIV++NLVRDK TGK +GF F+ YEDQR +N NG +I GRTIRVDHV+ Y+ +E
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQE 120
Query: 115 -EDEETRQRMREERGV 129
ED + R +E+G
Sbjct: 121 SEDVDDVTRELQEKGC 136
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 82/120 (68%), Gaps = 8/120 (6%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ +++I+ +N +E D S +SWH Y DSAY+Y+G + FDL E D+L VF++ GE V
Sbjct: 1 MNSIRQIERLNEQELDKPFS--SSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPV 58
Query: 64 DVNLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDHVAKYKKKEEEDE 117
D+NLVRDK TGK +GFAF+ YEDQR +N+ ++L R +RVDHVA YK ++E E
Sbjct: 59 DINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKEKE 118
>sp|P40565|IST3_YEAST U2 snRNP component IST3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IST3 PE=1 SV=1
Length = 148
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 7/106 (6%)
Query: 7 VKRIQHINSKEADLGI-SDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV 65
+ +IQ IN KE GI S SWH +YKD+AY+Y+G + +LTEGD+L VF++ G VDV
Sbjct: 1 MNKIQQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDV 60
Query: 66 NLVRDKGTGKPRGFAFVAYEDQR------NNLNGAQILGRTIRVDH 105
L RD+ TG+ +GFA++ YEDQR +NLNG +I GR +++DH
Sbjct: 61 ILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDH 106
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVAKYKKKEE 114
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVAKYKKKEE 114
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVAKYKKKEE 114
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVAKYKKKEE 114
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVAKYKKKEE 114
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 92 NGAQILGRTIRVDHVAKYKKKEE 114
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 92 NGAQILGRTIRVDHVAK 108
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 92 NGAQILGRTIRVDHVAK 108
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 92 NGAQILGRTIRVDHVAK 108
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 92 NGAQILGRTIRVDHVAK 108
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 92 NGAQILGRTIRVDHVAK 108
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGA--- 94
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + LN
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 95 ---QILGRTIR 102
Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGA--- 94
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + LN
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 95 ---QILGRTIR 102
Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87
+A ++VGG+P D TE + F Q G ++D L+ DK TG+PRGF FV YE++
Sbjct: 246 TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQIL 97
+++GG+ ++ T+ L F Q GE++D ++RD TG+ RGF F+ +++ + +N +++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK-CVN--EVM 221
Query: 98 GRTIRVD-HVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANT 156
+ +D + K+ +E+ + GV G+CT + F + R +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVP-----GDCTEEEFRNFFNQFGRVLDA 276
Query: 157 GGGPQDRSSRWGHEKFEGFSWGKNDSSSRATGS-GRVALEGNPNQSDRREEKRSIRHDH 214
D+ + G + GF +N+S+ AT S + + G P + R K S+R H
Sbjct: 277 TLM-MDKDT--GRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSH 332
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ F+ TE L VF++ G++ +V +V+D+ + + RGF FV +E D
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAK 108
+NG + GR IRVD K
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D +++GG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 88 RNNLNGAQILGRTIRVDHVAK 108
+NG + GR IRVD K
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGK 83
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 92 NGAQILGRTIR 102
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 22 ISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81
I D + +D V+VG +P+ + E + F CG I+ V +VRDK TG +GF +
Sbjct: 273 IRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGY 332
Query: 82 VAYEDQRN-----NLNGAQILGRTIRV 103
V +E+ + LN ++++GR +RV
Sbjct: 333 VLFENTDSVHLALKLNNSELMGRKLRV 359
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQ 87
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E D
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 88 RNNLNGAQILGRTIRVDHVAK 108
+NG + GR IRVD K
Sbjct: 64 MAGMNGKTVDGRQIRVDQAGK 84
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G +V+V L++D+ T K RGFAFV +E D L
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKALDGKPIKVEQATK 86
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VYV +PF LT DL +F++ G++V V +++DK T + +G AF+ + D+ + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71
Query: 92 NGAQILGRTIR 102
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VYV +PF LT DL +F++ G++V V +++DK + K +G +FV + D+ + L
Sbjct: 12 VYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVRGL 71
Query: 92 NGAQILGRTIR 102
N Q+ GR I+
Sbjct: 72 NNKQLFGRAIK 82
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV-----AYEDQR-NNL 91
+YVG + + TE DL AVFA GE+ V L D+ TG+ RGFAFV A ED L
Sbjct: 3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL 62
Query: 92 NGAQILGRTIRVD 104
+GA+ +GR +RV+
Sbjct: 63 DGAEWMGRQLRVN 75
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + +E L A F++ G I +V L++D+ T K RGFAFV YE D +
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKPLDGKPIKVEQATK 86
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE------DQRNNL 91
+++GG+ + E L VF + G IV+V L++D+ T K RGFAFV +E D ++
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
VYV IPF LT D+ + ++ G++V V +V+DK T +G AFV + D+ + +L
Sbjct: 12 VYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRSL 71
Query: 92 NGAQILGRTIR 102
N Q+ GR ++
Sbjct: 72 NNKQLFGRMVK 82
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 22 ISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81
I D + +D V+VG +P+ + E L F CG IV V +VR+ TG RGF +
Sbjct: 271 IRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGY 330
Query: 82 VAYEDQ-----RNNLNGAQILGRTIRV 103
V +E+ LN ++++GR +RV
Sbjct: 331 VLFENTDAVHLALKLNNSELMGRKLRV 357
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNN------L 91
+YVG + +D++E DL AVFA+ G + V L D+ TG+ RGF FV E L
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 92 NGAQILGRTIRVD 104
+GA+ +GR ++V+
Sbjct: 63 DGAEWMGRDLKVN 75
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ------RNNL 91
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 92 NGAQILGRTIRVDHVAK 108
NG ++ GR +RV HV +
Sbjct: 325 NGFELAGRPMRVGHVTE 341
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV---AYEDQRNNL--- 91
+YVG +PF +T L +FA+ G + +V +V D+ T + RGFAFV + E+ + +
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 92 NGAQILGRTIRVDH 105
+G+Q+ GRT++V+
Sbjct: 176 DGSQVGGRTVKVNF 189
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 27 SWHAKYKDSAY-VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE 85
S + + DS + +YV + + LT L FA + ++ D+ +G+ RGF F+ +
Sbjct: 207 STYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFS 266
Query: 86 ------DQRNNLNGAQILGRTIRVD 104
+ +N ++ GR +R++
Sbjct: 267 SAEAMNSALDTMNEVELEGRPLRLN 291
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 69 NGTSLHGKAIKVEQAKK 85
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR------NNLN 92
+VGG+ + + +L F+Q GE++D ++ D+ TG+ RGF FV ++D++ + +N
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 93 GAQILGRTIRVDH 105
G ++ GRTI V+
Sbjct: 69 GKELDGRTITVNE 81
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91
+++GG+ + E L A F + G IV+V L++D+ T K RGFAFV +E N ++
Sbjct: 10 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDM 69
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V K
Sbjct: 70 NGKSLDGKAIKVAQATK 86
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY---EDQRN-- 89
S+ ++VGGI + E L F++ GE+VD ++ D+ TG+ RGFAFV + E+ N
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 90 NLNGAQILGRTIRVDHVAK 108
L+G + GR IRV++ +
Sbjct: 93 QLDGQDLHGRRIRVNYATE 111
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRN---NL 91
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E D +N ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 92 NGAQILGRTIRVDHVAK 108
NG + G+ I+V+ K
Sbjct: 69 NGKSLHGKAIKVEQAKK 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,477,459
Number of Sequences: 539616
Number of extensions: 5531861
Number of successful extensions: 27911
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 944
Number of HSP's that attempted gapping in prelim test: 18573
Number of HSP's gapped (non-prelim): 6680
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)