Query 022814
Match_columns 291
No_of_seqs 324 out of 2497
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0415 Predicted peptidyl pro 99.9 5.5E-25 1.2E-29 195.3 9.2 109 3-111 207-321 (479)
2 KOG0126 Predicted RNA-binding 99.9 1.3E-24 2.8E-29 177.1 7.1 113 1-113 1-119 (219)
3 KOG0113 U1 small nuclear ribon 99.8 8.4E-19 1.8E-23 153.1 15.4 79 31-109 97-181 (335)
4 PLN03134 glycine-rich RNA-bind 99.7 1.3E-17 2.9E-22 135.8 11.8 81 30-110 29-115 (144)
5 TIGR01659 sex-lethal sex-letha 99.7 3.3E-18 7.2E-23 158.1 8.3 134 30-174 102-244 (346)
6 TIGR01645 half-pint poly-U bin 99.7 8.1E-18 1.8E-22 163.9 9.0 134 32-176 104-257 (612)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.3E-17 7.2E-22 152.1 8.4 132 34-176 2-142 (352)
8 KOG0124 Polypyrimidine tract-b 99.7 2.9E-17 6.2E-22 146.9 6.7 131 33-177 111-264 (544)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.1E-15 2.3E-20 142.0 11.4 76 35-110 269-350 (352)
10 TIGR01622 SF-CC1 splicing fact 99.6 9.2E-16 2E-20 147.4 9.4 134 31-175 85-238 (457)
11 KOG0149 Predicted RNA-binding 99.6 1E-15 2.2E-20 130.1 6.9 75 34-108 11-90 (247)
12 KOG0121 Nuclear cap-binding pr 99.6 6.8E-16 1.5E-20 119.5 5.1 77 31-107 32-114 (153)
13 KOG0107 Alternative splicing f 99.6 1.7E-14 3.6E-19 117.6 12.2 72 33-109 8-85 (195)
14 TIGR01628 PABP-1234 polyadenyl 99.6 2.4E-15 5.1E-20 148.3 8.5 128 37-176 2-140 (562)
15 PF00076 RRM_1: RNA recognitio 99.6 8.7E-15 1.9E-19 103.5 8.2 64 38-102 1-70 (70)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.2E-14 4.8E-19 139.6 12.3 76 33-108 293-374 (509)
17 KOG4207 Predicted splicing fac 99.6 2.1E-14 4.7E-19 119.8 10.2 77 31-107 9-91 (256)
18 PLN03120 nucleic acid binding 99.5 3.3E-14 7.1E-19 124.5 10.0 72 35-109 4-80 (260)
19 TIGR01659 sex-lethal sex-letha 99.5 6.2E-14 1.4E-18 129.7 11.1 78 33-110 191-276 (346)
20 TIGR01645 half-pint poly-U bin 99.5 3.9E-14 8.5E-19 138.3 8.9 76 34-109 203-284 (612)
21 TIGR01648 hnRNP-R-Q heterogene 99.5 6.8E-14 1.5E-18 136.3 10.2 73 34-107 57-136 (578)
22 TIGR01622 SF-CC1 splicing fact 99.5 5.6E-14 1.2E-18 135.1 8.8 77 33-109 184-266 (457)
23 PLN03121 nucleic acid binding 99.5 1.8E-13 3.9E-18 118.2 9.9 73 33-108 3-80 (243)
24 KOG0122 Translation initiation 99.5 1.3E-13 2.7E-18 117.9 8.6 80 30-109 184-269 (270)
25 KOG0144 RNA-binding protein CU 99.5 6.5E-14 1.4E-18 128.0 6.7 131 33-175 32-175 (510)
26 KOG0117 Heterogeneous nuclear 99.5 2.3E-13 5E-18 124.9 9.7 76 32-107 80-162 (506)
27 KOG0145 RNA-binding protein EL 99.5 1.2E-13 2.5E-18 119.0 7.2 77 34-110 40-122 (360)
28 PF14259 RRM_6: RNA recognitio 99.5 3.7E-13 7.9E-18 95.7 8.1 64 38-102 1-70 (70)
29 KOG0131 Splicing factor 3b, su 99.4 5.7E-14 1.2E-18 115.1 4.2 75 33-107 7-87 (203)
30 KOG0148 Apoptosis-promoting RN 99.4 8.6E-14 1.9E-18 120.4 4.0 76 35-110 62-143 (321)
31 TIGR01628 PABP-1234 polyadenyl 99.4 7.5E-13 1.6E-17 130.6 11.2 132 32-176 175-337 (562)
32 PLN03213 repressor of silencin 99.4 3.8E-13 8.2E-18 124.8 8.4 72 34-109 9-88 (759)
33 KOG0111 Cyclophilin-type pepti 99.4 1.2E-13 2.6E-18 116.3 4.2 82 31-112 6-93 (298)
34 COG0724 RNA-binding proteins ( 99.4 1.1E-12 2.5E-17 115.1 9.3 74 35-108 115-194 (306)
35 KOG0125 Ataxin 2-binding prote 99.4 1.3E-12 2.9E-17 115.8 8.1 73 34-108 95-173 (376)
36 smart00362 RRM_2 RNA recogniti 99.4 3.5E-12 7.6E-17 89.3 8.6 66 37-104 1-72 (72)
37 KOG0148 Apoptosis-promoting RN 99.3 2.8E-12 6.1E-17 111.1 8.2 75 28-108 157-237 (321)
38 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2E-12 4.4E-17 125.9 8.1 70 32-107 172-258 (509)
39 KOG0108 mRNA cleavage and poly 99.3 2.5E-12 5.4E-17 121.2 7.5 76 36-111 19-100 (435)
40 KOG0130 RNA-binding protein RB 99.3 1.9E-12 4E-17 101.4 5.1 79 29-107 66-150 (170)
41 smart00360 RRM RNA recognition 99.3 8.6E-12 1.9E-16 86.9 7.9 65 40-104 1-71 (71)
42 KOG0105 Alternative splicing f 99.3 1.2E-11 2.7E-16 101.7 9.5 72 33-107 4-81 (241)
43 KOG0131 Splicing factor 3b, su 99.3 1.2E-12 2.7E-17 107.3 3.4 103 1-112 71-180 (203)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.2E-11 2.6E-16 119.9 9.3 70 34-109 1-78 (481)
45 KOG0127 Nucleolar protein fibr 99.3 1.5E-11 3.2E-16 115.6 8.9 78 34-111 291-380 (678)
46 KOG4205 RNA-binding protein mu 99.3 4.9E-12 1.1E-16 114.5 5.6 77 34-110 5-86 (311)
47 KOG0123 Polyadenylate-binding 99.3 3.6E-11 7.8E-16 112.1 11.3 135 23-174 66-217 (369)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2E-11 4.3E-16 118.3 9.8 73 32-109 272-351 (481)
49 KOG0147 Transcriptional coacti 99.3 4.8E-12 1E-16 119.1 5.1 78 33-110 276-359 (549)
50 cd00590 RRM RRM (RNA recogniti 99.2 6.6E-11 1.4E-15 83.2 9.0 68 37-105 1-74 (74)
51 KOG0144 RNA-binding protein CU 99.2 7.6E-12 1.6E-16 114.6 4.4 82 33-115 122-212 (510)
52 KOG0114 Predicted RNA-binding 99.2 6.9E-11 1.5E-15 88.6 8.4 75 34-111 17-97 (124)
53 TIGR01648 hnRNP-R-Q heterogene 99.2 5.4E-11 1.2E-15 116.2 10.0 70 34-111 232-309 (578)
54 KOG0127 Nucleolar protein fibr 99.2 3E-11 6.4E-16 113.6 7.6 77 34-111 116-198 (678)
55 KOG0145 RNA-binding protein EL 99.2 9.8E-11 2.1E-15 101.2 8.1 73 35-107 278-356 (360)
56 KOG4208 Nucleolar RNA-binding 99.2 8.2E-11 1.8E-15 98.6 7.0 81 29-109 43-130 (214)
57 KOG0146 RNA-binding protein ET 99.1 3.1E-11 6.8E-16 104.5 4.1 79 31-109 281-365 (371)
58 KOG0123 Polyadenylate-binding 99.1 4.7E-11 1E-15 111.3 5.5 119 36-176 2-126 (369)
59 KOG0117 Heterogeneous nuclear 99.1 7.1E-11 1.5E-15 108.7 6.4 70 36-113 260-335 (506)
60 KOG0109 RNA-binding protein LA 99.1 7.3E-11 1.6E-15 103.4 6.2 68 36-111 3-76 (346)
61 KOG0110 RNA-binding protein (R 99.1 3.3E-10 7.2E-15 109.6 7.7 73 35-107 515-596 (725)
62 smart00361 RRM_1 RNA recogniti 99.0 9.1E-10 2E-14 78.5 7.3 55 49-103 2-69 (70)
63 KOG0153 Predicted RNA-binding 99.0 1.4E-09 3.1E-14 97.4 7.7 77 26-108 219-302 (377)
64 KOG0109 RNA-binding protein LA 99.0 6.1E-10 1.3E-14 97.7 4.6 72 31-110 74-151 (346)
65 PF13893 RRM_5: RNA recognitio 98.9 2.5E-09 5.4E-14 72.6 6.5 50 52-106 1-56 (56)
66 KOG4205 RNA-binding protein mu 98.9 1.9E-09 4E-14 97.8 7.1 79 34-112 96-179 (311)
67 KOG0124 Polypyrimidine tract-b 98.9 7.2E-10 1.6E-14 99.9 3.9 75 33-107 208-288 (544)
68 KOG4206 Spliceosomal protein s 98.9 5.2E-09 1.1E-13 89.1 7.0 77 32-111 6-92 (221)
69 KOG4212 RNA-binding protein hn 98.8 2.7E-08 5.9E-13 91.7 11.2 76 31-107 40-122 (608)
70 KOG0116 RasGAP SH3 binding pro 98.8 3.6E-08 7.8E-13 92.7 11.4 74 33-106 286-364 (419)
71 KOG0132 RNA polymerase II C-te 98.8 6.8E-09 1.5E-13 101.4 6.4 76 32-113 418-499 (894)
72 KOG4209 Splicing factor RNPS1, 98.8 6.8E-09 1.5E-13 90.7 5.9 77 30-106 96-177 (231)
73 KOG0147 Transcriptional coacti 98.7 2.9E-09 6.4E-14 100.5 1.5 125 33-159 177-323 (549)
74 KOG0533 RRM motif-containing p 98.7 3.3E-08 7.2E-13 86.5 6.9 79 32-111 80-164 (243)
75 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.3E-08 7.2E-13 93.7 7.1 77 33-109 403-485 (940)
76 KOG4454 RNA binding protein (R 98.7 7.5E-09 1.6E-13 87.6 1.9 76 32-109 6-87 (267)
77 KOG0110 RNA-binding protein (R 98.6 3.2E-08 6.8E-13 96.1 4.7 80 34-113 612-697 (725)
78 KOG0146 RNA-binding protein ET 98.6 4.4E-08 9.5E-13 85.2 4.6 77 34-111 18-103 (371)
79 PF04059 RRM_2: RNA recognitio 98.5 5.8E-07 1.3E-11 67.9 8.1 72 36-107 2-85 (97)
80 KOG1548 Transcription elongati 98.4 7.5E-07 1.6E-11 80.2 8.3 80 28-108 126-220 (382)
81 KOG0120 Splicing factor U2AF, 98.4 2.5E-07 5.4E-12 88.3 4.9 80 32-111 286-371 (500)
82 KOG4212 RNA-binding protein hn 98.4 4.1E-07 8.9E-12 84.1 6.1 71 31-106 532-608 (608)
83 KOG0106 Alternative splicing f 98.4 3.6E-07 7.9E-12 78.4 5.1 65 36-108 2-72 (216)
84 KOG0226 RNA-binding proteins [ 98.4 3.7E-07 7.9E-12 79.0 4.6 78 33-110 188-271 (290)
85 KOG0151 Predicted splicing reg 98.2 3.6E-06 7.7E-11 82.0 6.4 75 32-106 171-254 (877)
86 KOG1457 RNA binding protein (c 98.1 9.4E-06 2E-10 69.2 7.7 79 33-111 32-120 (284)
87 KOG4210 Nuclear localization s 98.1 2.1E-06 4.5E-11 77.6 2.4 77 34-110 183-265 (285)
88 KOG4660 Protein Mei2, essentia 97.9 4.6E-06 1E-10 79.4 2.7 67 31-102 71-143 (549)
89 KOG4211 Splicing factor hnRNP- 97.9 2.9E-05 6.4E-10 73.1 7.7 73 34-109 9-86 (510)
90 KOG1995 Conserved Zn-finger pr 97.9 8.9E-06 1.9E-10 73.8 4.2 78 31-108 62-153 (351)
91 KOG4849 mRNA cleavage factor I 97.9 3.4E-05 7.5E-10 69.7 6.9 69 36-104 81-157 (498)
92 KOG4206 Spliceosomal protein s 97.8 0.00011 2.4E-09 62.9 7.9 72 30-106 141-219 (221)
93 KOG1457 RNA binding protein (c 97.5 6.3E-05 1.4E-09 64.3 3.1 52 34-89 209-260 (284)
94 KOG1190 Polypyrimidine tract-b 97.5 0.00029 6.4E-09 65.1 7.1 70 35-109 297-373 (492)
95 KOG0129 Predicted RNA-binding 97.5 0.00032 6.9E-09 66.6 7.0 61 29-89 364-425 (520)
96 KOG4211 Splicing factor hnRNP- 97.4 0.00039 8.5E-09 65.6 6.8 73 34-107 102-180 (510)
97 COG5175 MOT2 Transcriptional r 97.4 0.00062 1.3E-08 61.5 7.5 75 33-107 112-201 (480)
98 KOG4676 Splicing factor, argin 97.4 1.7E-05 3.6E-10 72.7 -2.7 59 35-97 151-214 (479)
99 KOG0129 Predicted RNA-binding 97.3 0.00025 5.4E-09 67.3 4.9 71 35-106 259-338 (520)
100 KOG2314 Translation initiation 97.2 0.00094 2E-08 64.1 6.7 75 34-109 57-144 (698)
101 KOG0106 Alternative splicing f 97.0 0.0004 8.8E-09 59.8 2.6 62 34-103 98-165 (216)
102 KOG4676 Splicing factor, argin 97.0 0.0016 3.5E-08 60.0 6.5 71 37-107 9-87 (479)
103 KOG3152 TBP-binding protein, a 97.0 0.0004 8.7E-09 60.5 2.5 67 34-100 73-157 (278)
104 PF08777 RRM_3: RNA binding mo 97.0 0.0015 3.2E-08 50.2 5.3 64 36-105 2-76 (105)
105 KOG1855 Predicted RNA-binding 97.0 0.00053 1.2E-08 63.7 2.9 59 31-89 227-298 (484)
106 KOG0128 RNA-binding protein SA 96.9 0.00044 9.6E-09 69.1 2.0 75 35-110 736-816 (881)
107 KOG1190 Polypyrimidine tract-b 96.5 0.0088 1.9E-07 55.6 7.1 81 24-108 403-490 (492)
108 PF11608 Limkain-b1: Limkain b 96.4 0.0089 1.9E-07 43.6 5.3 63 36-108 3-76 (90)
109 KOG4307 RNA binding protein RB 96.3 0.012 2.6E-07 58.1 7.2 71 35-105 867-943 (944)
110 PF08952 DUF1866: Domain of un 96.3 0.017 3.7E-07 46.7 6.8 73 31-111 23-109 (146)
111 KOG2416 Acinus (induces apopto 96.2 0.0026 5.6E-08 61.5 2.1 70 32-107 441-520 (718)
112 KOG1456 Heterogeneous nuclear 96.1 0.018 4E-07 52.9 7.0 71 32-107 284-361 (494)
113 KOG0112 Large RNA-binding prot 96.1 0.0086 1.9E-07 60.6 5.1 77 31-113 451-535 (975)
114 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.02 4.4E-07 38.2 5.2 47 36-89 2-48 (53)
115 KOG0128 RNA-binding protein SA 96.0 0.00053 1.1E-08 68.6 -3.8 64 35-98 667-735 (881)
116 KOG0115 RNA-binding protein p5 95.9 0.0068 1.5E-07 53.1 3.3 77 12-89 8-84 (275)
117 KOG1365 RNA-binding protein Fu 95.8 0.013 2.7E-07 54.2 4.4 72 34-106 279-359 (508)
118 PF08675 RNA_bind: RNA binding 95.7 0.037 8.1E-07 40.4 5.7 48 33-89 7-54 (87)
119 KOG2193 IGF-II mRNA-binding pr 95.7 0.0074 1.6E-07 56.3 2.5 70 36-112 2-79 (584)
120 KOG4307 RNA binding protein RB 95.6 0.014 3E-07 57.7 4.2 77 34-111 433-516 (944)
121 KOG0112 Large RNA-binding prot 95.5 0.0049 1.1E-07 62.3 0.8 74 32-106 369-448 (975)
122 KOG1456 Heterogeneous nuclear 95.3 0.04 8.8E-07 50.8 6.0 73 29-107 25-105 (494)
123 KOG4210 Nuclear localization s 95.1 0.01 2.2E-07 53.8 1.5 77 34-110 87-169 (285)
124 KOG0120 Splicing factor U2AF, 95.0 0.058 1.3E-06 52.2 6.3 54 54-107 428-490 (500)
125 KOG2202 U2 snRNP splicing fact 94.9 0.014 3E-07 51.2 1.9 85 51-150 84-175 (260)
126 KOG2253 U1 snRNP complex, subu 94.9 0.012 2.7E-07 57.7 1.6 73 24-105 29-107 (668)
127 KOG1548 Transcription elongati 94.6 0.31 6.6E-06 44.7 9.5 73 32-108 262-351 (382)
128 KOG0105 Alternative splicing f 94.0 0.13 2.8E-06 43.1 5.4 49 34-89 114-162 (241)
129 KOG2135 Proteins containing th 93.8 0.054 1.2E-06 51.4 3.2 69 34-108 371-445 (526)
130 PF05172 Nup35_RRM: Nup53/35/4 93.7 0.29 6.3E-06 37.2 6.4 71 35-106 6-89 (100)
131 PF03467 Smg4_UPF3: Smg-4/UPF3 93.5 0.083 1.8E-06 44.4 3.6 76 33-108 5-97 (176)
132 KOG1996 mRNA splicing factor [ 92.6 0.28 6.1E-06 44.0 5.7 58 50-107 301-365 (378)
133 KOG1365 RNA-binding protein Fu 92.5 0.43 9.3E-06 44.4 6.9 66 37-103 163-237 (508)
134 KOG2068 MOT2 transcription fac 92.3 0.05 1.1E-06 49.5 0.7 73 35-107 77-161 (327)
135 PF03880 DbpA: DbpA RNA bindin 91.7 0.75 1.6E-05 32.7 6.1 61 37-106 2-74 (74)
136 KOG4660 Protein Mei2, essentia 91.6 0.18 4E-06 48.7 3.6 74 34-107 387-471 (549)
137 PF15023 DUF4523: Protein of u 91.3 0.99 2.2E-05 36.4 6.9 71 31-108 82-161 (166)
138 PF07576 BRAP2: BRCA1-associat 88.6 2.8 6.2E-05 32.4 7.4 71 34-106 12-92 (110)
139 PF10309 DUF2414: Protein of u 85.8 3.3 7.1E-05 28.5 5.6 47 35-89 5-54 (62)
140 KOG0226 RNA-binding proteins [ 81.3 0.48 1E-05 41.7 0.0 73 36-109 97-178 (290)
141 smart00596 PRE_C2HC PRE_C2HC d 80.6 5.4 0.00012 28.0 5.1 57 50-106 2-62 (69)
142 KOG0804 Cytoplasmic Zn-finger 79.1 5.7 0.00012 37.9 6.3 62 34-98 73-142 (493)
143 KOG2318 Uncharacterized conser 78.9 8.1 0.00018 38.1 7.4 38 32-69 171-213 (650)
144 KOG2591 c-Mpl binding protein, 78.4 5.3 0.00011 39.1 5.9 50 33-89 173-224 (684)
145 KOG4574 RNA-binding protein (c 77.1 1.7 3.8E-05 44.3 2.4 76 27-108 290-373 (1007)
146 KOG4454 RNA binding protein (R 76.7 0.6 1.3E-05 40.3 -0.7 54 35-89 80-137 (267)
147 PF07530 PRE_C2HC: Associated 72.7 13 0.00028 26.0 5.4 58 50-107 2-63 (68)
148 PF03468 XS: XS domain; Inter 71.9 4.3 9.4E-05 31.6 3.0 50 37-89 10-68 (116)
149 PF04847 Calcipressin: Calcipr 70.9 14 0.0003 31.3 6.1 56 49-110 9-72 (184)
150 PF09707 Cas_Cas2CT1978: CRISP 69.1 9.4 0.0002 28.1 4.1 49 35-86 25-73 (86)
151 COG0724 RNA-binding proteins ( 65.1 11 0.00024 32.1 4.6 59 31-89 221-279 (306)
152 KOG4483 Uncharacterized conser 63.9 13 0.00028 35.0 4.9 64 34-104 390-454 (528)
153 KOG2891 Surface glycoprotein [ 63.7 9.5 0.00021 34.2 3.8 50 35-84 149-215 (445)
154 KOG4285 Mitotic phosphoprotein 62.8 31 0.00068 31.4 6.9 56 38-100 200-260 (350)
155 PRK11558 putative ssRNA endonu 60.8 17 0.00038 27.3 4.3 50 35-87 27-76 (97)
156 KOG4410 5-formyltetrahydrofola 60.8 16 0.00034 33.0 4.6 49 35-89 330-379 (396)
157 KOG4008 rRNA processing protei 60.7 9.7 0.00021 33.3 3.3 35 32-66 37-71 (261)
158 PRK11634 ATP-dependent RNA hel 51.8 1E+02 0.0022 31.2 9.4 63 36-107 487-561 (629)
159 PF15513 DUF4651: Domain of un 47.9 47 0.001 22.8 4.3 19 50-68 9-27 (62)
160 TIGR01873 cas_CT1978 CRISPR-as 46.9 16 0.00034 27.0 2.0 50 35-87 25-75 (87)
161 PF10567 Nab6_mRNP_bdg: RNA-re 41.8 37 0.00081 30.8 4.0 55 35-89 15-76 (309)
162 PF05189 RTC_insert: RNA 3'-te 39.8 38 0.00082 25.4 3.3 50 37-86 12-66 (103)
163 PF11411 DNA_ligase_IV: DNA li 39.0 24 0.00051 21.5 1.6 17 45-61 19-35 (36)
164 PF11767 SET_assoc: Histone ly 38.7 1.3E+02 0.0029 20.8 5.8 49 46-103 11-65 (66)
165 KOG4365 Uncharacterized conser 37.7 8.6 0.00019 36.7 -0.7 54 36-89 4-57 (572)
166 COG0030 KsgA Dimethyladenosine 37.5 35 0.00077 30.5 3.2 36 35-70 95-130 (259)
167 PF08206 OB_RNB: Ribonuclease 35.7 39 0.00085 22.5 2.5 30 75-105 6-42 (58)
168 KOG0113 U1 small nuclear ribon 34.2 56 0.0012 29.8 3.9 22 138-159 125-146 (335)
169 COG5353 Uncharacterized protei 32.3 2.1E+02 0.0046 23.4 6.4 55 33-87 85-152 (161)
170 KOG3938 RGS-GAIP interacting p 31.3 52 0.0011 29.6 3.1 31 59-89 124-160 (334)
171 PF00398 RrnaAD: Ribosomal RNA 29.7 42 0.00091 29.7 2.4 36 33-68 95-132 (262)
172 PF07230 Peptidase_S80: Bacter 26.0 58 0.0013 31.8 2.7 42 32-77 272-316 (501)
173 KOG2295 C2H2 Zn-finger protein 25.9 8.1 0.00018 37.9 -3.0 66 33-98 229-300 (648)
174 cd04489 ExoVII_LU_OBF ExoVII_L 24.4 87 0.0019 21.6 2.9 24 59-89 5-28 (78)
175 COG3227 LasB Zinc metalloprote 23.9 2.2E+02 0.0047 27.9 6.1 65 37-106 39-105 (507)
176 PRK00274 ksgA 16S ribosomal RN 23.5 80 0.0017 28.1 3.1 33 37-69 107-139 (272)
177 COG4305 Endoglucanase C-termin 23.4 1.2E+02 0.0025 25.5 3.7 75 12-86 65-157 (232)
178 PF07292 NID: Nmi/IFP 35 domai 22.8 48 0.001 24.5 1.2 25 32-56 49-73 (88)
179 PF10994 DUF2817: Protein of u 22.8 1.3E+02 0.0028 28.1 4.3 59 31-89 175-234 (341)
180 PHA02531 20 portal vertex prot 22.7 61 0.0013 31.6 2.2 41 33-77 276-319 (514)
181 KOG1295 Nonsense-mediated deca 22.4 74 0.0016 29.9 2.6 62 35-96 7-77 (376)
182 PTZ00338 dimethyladenosine tra 22.4 79 0.0017 28.7 2.8 33 37-69 103-135 (294)
183 TIGR00755 ksgA dimethyladenosi 20.8 1.1E+02 0.0024 26.8 3.4 25 37-61 96-120 (253)
No 1
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-25 Score=195.29 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=103.6
Q ss_pred cHHHHHHHhhhchhhhccCCCCCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE
Q 022814 3 PLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFV 82 (291)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV 82 (291)
.++.+.+..++.+++..|+|+++++.+...||.++||||.|+|+||+++|+-||+.||+|.+|.||+|..||.+..||||
T Consensus 207 el~e~~~e~ea~~~A~iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFi 286 (479)
T KOG0415|consen 207 ELEEVLAEKEAKAQAVILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFI 286 (479)
T ss_pred HHHHHHHHHHHHhhHhHHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeee
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcChhh------hcCCceeCCeEEEEeccCCccc
Q 022814 83 AYEDQRN------NLNGAQILGRTIRVDHVAKYKK 111 (291)
Q Consensus 83 ~F~~~~~------~lng~~i~gr~i~V~~a~~~~~ 111 (291)
+|++.++ +|++++|+++.|+|+|+++..+
T Consensus 287 EFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 287 EFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred eecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 9999988 9999999999999999987654
No 2
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=177.10 Aligned_cols=113 Identities=68% Similarity=1.197 Sum_probs=109.0
Q ss_pred CCcHHHHHHHhhhchhhhccCCCCCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEE
Q 022814 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFA 80 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~a 80 (291)
||+++.|+.+++++++++.++.....+|++.+.++.-|||||||+.+||.+|..+|++||+|+.|.|++|+.||+|+|||
T Consensus 1 mnplt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 1 MNPLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred CchhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcChhh------hcCCceeCCeEEEEeccCCccccc
Q 022814 81 FVAYEDQRN------NLNGAQILGRTIRVDHVAKYKKKE 113 (291)
Q Consensus 81 FV~F~~~~~------~lng~~i~gr~i~V~~a~~~~~~~ 113 (291)
|+.|+++-+ .|||+.|.|+.|+|++.....+..
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~pk 119 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKPK 119 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeecccccCCc
Confidence 999999988 899999999999999988776654
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=8.4e-19 Score=153.07 Aligned_cols=79 Identities=35% Similarity=0.571 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...|.+||||+.||+.|+|..|+..|+.||+|+.|.||.|+.||+++|||||+|++..+ ..+|++|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45788999999999999999999999999999999999999999999999999999877 789999999999999
Q ss_pred ccCCc
Q 022814 105 HVAKY 109 (291)
Q Consensus 105 ~a~~~ 109 (291)
+....
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 87543
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=1.3e-17 Score=135.85 Aligned_cols=81 Identities=30% Similarity=0.640 Sum_probs=74.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++.|++++|||||+|.+.++ .||+..|+|+.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 335668899999999999999999999999999999999999999999999999999887 68999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9986543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=3.3e-18 Score=158.11 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=100.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
......++|||+|||+.+|+++|+++|+.||+|+.|.|+.|..|++++|||||+|.+.++ .||++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345678999999999999999999999999999999999999999999999999999887 79999999999999
Q ss_pred eccCCccccchhHHH---HHHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccC
Q 022814 104 DHVAKYKKKEEEDEE---TRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEG 174 (291)
Q Consensus 104 ~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~ 174 (291)
.++.+.........- .......+..|...|. .+|.+..|.+..+..++. .++|+||.|..
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~--~fG~V~~v~i~~d~~tg~---------~kG~aFV~F~~ 244 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFG--KYGQIVQKNILRDKLTGT---------PRGVAFVRFNK 244 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHH--hcCCEEEEEEeecCCCCc---------cceEEEEEECC
Confidence 998654321110000 0000012233444443 466788888888877776 44667777754
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=8.1e-18 Score=163.91 Aligned_cols=134 Identities=25% Similarity=0.428 Sum_probs=101.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
....++|||+|||+.+++++|+.+|++||.|..|.|+.|+.||+++|||||+|.+.++ .|||..|+|+.|.|..
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4567899999999999999999999999999999999999999999999999999987 6999999999999987
Q ss_pred cCCccccchhHHHH----HHhh----------hhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCC
Q 022814 106 VAKYKKKEEEDEET----RQRM----------REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEK 171 (291)
Q Consensus 106 a~~~~~~~~~~~~~----~~~~----------~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~ 171 (291)
.............. .... -....+...|. .||.+..|.+..+..++. .+||||+.
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs--~FG~I~svrl~~D~~tgk---------sKGfGFVe 252 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE--AFGEIVKCQLARAPTGRG---------HKGYGFIE 252 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh--hcCCeeEEEEEecCCCCC---------cCCeEEEE
Confidence 65432211100000 0000 01223333443 478899999999888766 56788888
Q ss_pred ccCCC
Q 022814 172 FEGFS 176 (291)
Q Consensus 172 ~~~~~ 176 (291)
|....
T Consensus 253 Fe~~e 257 (612)
T TIGR01645 253 YNNLQ 257 (612)
T ss_pred ECCHH
Confidence 87644
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=3.3e-17 Score=152.09 Aligned_cols=132 Identities=21% Similarity=0.323 Sum_probs=94.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
+.++|||+|||+.+|+++|+++|++||+|..|.|+.++.+|+++|||||+|.+.++ .|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999887 799999999999999986
Q ss_pred CccccchhHHH---HHHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 108 KYKKKEEEDEE---TRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
+.........- .....-....+...|. .+|.+..+.+..+..++. .+||||+.|....
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~--~~G~i~~~~~~~~~~~~~---------~~g~~fv~f~~~~ 142 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFS--PFGQIITSRILSDNVTGL---------SKGVGFIRFDKRD 142 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHh--ccCCEEEEEEEecCCCCC---------cCcEEEEEECCHH
Confidence 54321100000 0000001111222222 345566677776665554 4567777765433
No 8
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.9e-17 Score=146.92 Aligned_cols=131 Identities=28% Similarity=0.474 Sum_probs=106.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.-.|.||||.|.+.+.|+.|+..|.+||+|++|.|..|+.|++.+|||||+|+-++. .|||.+++|+.|+|...
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 457899999999999999999999999999999999999999999999999999987 89999999999999977
Q ss_pred CCccccchhH----HHHHHhhh-------------hhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCC
Q 022814 107 AKYKKKEEED----EETRQRMR-------------EERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGH 169 (291)
Q Consensus 107 ~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~ 169 (291)
....+..... ++.+.... +.++++++|+. +..|.++++++.+. ++||||
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-----I~~C~LAr~pt~~~---------HkGyGf 256 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-----IVKCQLARAPTGRG---------HKGYGF 256 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-----eeeEEeeccCCCCC---------ccceee
Confidence 6655443322 22222222 46777777654 99999999999888 455667
Q ss_pred CCccCCCC
Q 022814 170 EKFEGFSW 177 (291)
Q Consensus 170 ~~~~~~~~ 177 (291)
.+|.+...
T Consensus 257 iEy~n~qs 264 (544)
T KOG0124|consen 257 IEYNNLQS 264 (544)
T ss_pred EEeccccc
Confidence 77766543
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.64 E-value=1.1e-15 Score=141.97 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~ 108 (291)
+.+|||+|||+.|++++|.++|++||.|..|.|+.|..||.++|||||+|.+.++ +|||..|+|+.|.|.|+.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 4479999999999999999999999999999999999999999999999999886 8999999999999999876
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 54
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=9.2e-16 Score=147.43 Aligned_cols=134 Identities=21% Similarity=0.382 Sum_probs=98.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEec
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~ 105 (291)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++ .|+|..|.|++|.|.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34567899999999999999999999999999999999999999999999999999887 8999999999999988
Q ss_pred cCCccccchhHHHHHH---------------hhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCC
Q 022814 106 VAKYKKKEEEDEETRQ---------------RMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHE 170 (291)
Q Consensus 106 a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~ 170 (291)
+............... ..-.+..+...| ..+|.+..|.+..+..++. ..||+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f--~~~G~i~~v~~~~d~~~g~---------~~g~afV 233 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF--EPFGDIEDVQLHRDPETGR---------SKGFGFI 233 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH--HhcCCeEEEEEEEcCCCCc---------cceEEEE
Confidence 6543222111000000 000122233333 2466788888888877665 4566677
Q ss_pred CccCC
Q 022814 171 KFEGF 175 (291)
Q Consensus 171 ~~~~~ 175 (291)
.|...
T Consensus 234 ~f~~~ 238 (457)
T TIGR01622 234 QFHDA 238 (457)
T ss_pred EECCH
Confidence 76553
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1e-15 Score=130.07 Aligned_cols=75 Identities=28% Similarity=0.543 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
-.++||||+|+|.|+.+.|..+|++||+|++..||.|+.||+|+|||||+|.+.++ +-..-.|+|+...|++|.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 35789999999999999999999999999999999999999999999999999998 3344679999999988754
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=6.8e-16 Score=119.47 Aligned_cols=77 Identities=32% Similarity=0.615 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
....++|||||||++.|+|++|.++|++||+|..|.|-.|+.+..+.|||||+|...++ -++|..|+.++|.|+
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 45678999999999999999999999999999999999999999999999999998776 789999999999999
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 875
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.7e-14 Score=117.55 Aligned_cols=72 Identities=35% Similarity=0.580 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
+-.++||||||+..+++.+|+.+|..||+|..|+|...+ .|||||||+++-+ .|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457899999999999999999999999999999999876 8999999998765 99999999999999988
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
...
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 643
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=2.4e-15 Score=148.32 Aligned_cols=128 Identities=21% Similarity=0.400 Sum_probs=94.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCcc
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKYK 110 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~~ 110 (291)
+|||||||+.+||++|.++|++||+|.+|.|++|..|++++|||||+|.+.++ .||+..|.|++|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999887 789999999999999875432
Q ss_pred ccchhHH-HHH----HhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 111 KKEEEDE-ETR----QRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 111 ~~~~~~~-~~~----~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
....... ... ...-.+..+...|. .+|.+..|.+..+. .+. .+|||||.|....
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~--~~G~i~~~~i~~~~-~g~---------skg~afV~F~~~e 140 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFS--KFGNILSCKVATDE-NGK---------SRGYGFVHFEKEE 140 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHH--hcCCcceeEeeecC-CCC---------cccEEEEEECCHH
Confidence 1110000 000 00012233444443 36778888888764 233 4577888886543
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=8.7e-15 Score=103.52 Aligned_cols=64 Identities=44% Similarity=0.872 Sum_probs=60.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 38 lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
|||+|||+.+|+++|..+|++||.|..|.|+.+ .++.+.|||||+|.+.++ .|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 589999999999999887 6999999999885
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=2.2e-14 Score=139.61 Aligned_cols=76 Identities=26% Similarity=0.560 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.+..||.++|||||+|.+.++ .|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 446899999999999999999999999999999999999999999999999999876 79999999999999998
Q ss_pred CC
Q 022814 107 AK 108 (291)
Q Consensus 107 ~~ 108 (291)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 17
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=2.1e-14 Score=119.75 Aligned_cols=77 Identities=32% Similarity=0.579 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
......+|-|.||.+-|+.++|..+|++||.|.+|.|+.|..|++++|||||-|....+ +|+|.+|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34557899999999999999999999999999999999999999999999999987554 999999999999998
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
+|.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 875
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.3e-14 Score=124.49 Aligned_cols=72 Identities=24% Similarity=0.445 Sum_probs=66.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCCc
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~~ 109 (291)
.++|||+|||+.+|+++|+++|+.||+|..|.|+.+.. ++|||||+|.++++ .|||..|+|+.|.|..+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998853 57999999999887 89999999999999998644
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.52 E-value=6.2e-14 Score=129.73 Aligned_cols=78 Identities=32% Similarity=0.559 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC--eEEEEe
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG--RTIRVD 104 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g--r~i~V~ 104 (291)
...++|||+|||+.||+++|+++|++||+|+.|.|+.++.||+++|||||+|.+.++ +||++.|.+ ++|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999999999999999999999887 799999876 789999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 886543
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.51 E-value=3.9e-14 Score=138.31 Aligned_cols=76 Identities=28% Similarity=0.486 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++ .||++.|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999899999999999999887 899999999999999887
Q ss_pred Cc
Q 022814 108 KY 109 (291)
Q Consensus 108 ~~ 109 (291)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=6.8e-14 Score=136.33 Aligned_cols=73 Identities=36% Similarity=0.594 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeEEEEecc
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRTIRVDHV 106 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~i~V~~a 106 (291)
..++|||+|||++++|++|.++|++||.|..|.|++| .+|+++|||||+|.+.++ .||+..|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 699999999999999887 78998885 788777765
Q ss_pred C
Q 022814 107 A 107 (291)
Q Consensus 107 ~ 107 (291)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=5.6e-14 Score=135.09 Aligned_cols=77 Identities=35% Similarity=0.684 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
+...+|||+|||+.+|+++|.++|++||.|..|.|+.+..+|+++|||||+|.+.++ .|||..|.|++|.|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 447899999999999999999999999999999999999899999999999999887 79999999999999998
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
...
T Consensus 264 ~~~ 266 (457)
T TIGR01622 264 QDS 266 (457)
T ss_pred cCC
Confidence 743
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1.8e-13 Score=118.16 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=66.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
+...||||+||++.+|+++|+++|+.||+|.+|.|+.+. ...|||||+|.++++ .|+|..|.+++|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 346799999999999999999999999999999999984 556899999999887 999999999999998765
Q ss_pred C
Q 022814 108 K 108 (291)
Q Consensus 108 ~ 108 (291)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 24
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.3e-13 Score=117.89 Aligned_cols=80 Identities=36% Similarity=0.522 Sum_probs=74.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
..-.++++|=|.||+.+++|++|+++|.+||.|..|.|++|+.||.++|||||+|.+.++ .|||+-++.-.|.|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 344678999999999999999999999999999999999999999999999999999887 89999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.|+.|.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999764
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.5e-14 Score=127.95 Aligned_cols=131 Identities=24% Similarity=0.426 Sum_probs=93.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCC-ceeCC--eEEEE
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNG-AQILG--RTIRV 103 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng-~~i~g--r~i~V 103 (291)
.+.-+||||.||..|+|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++ +|++ +.|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445689999999999999999999999999999999999999999999999999877 5555 44544 78899
Q ss_pred eccCCccccchhHHHH----HHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCC
Q 022814 104 DHVAKYKKKEEEDEET----RQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGF 175 (291)
Q Consensus 104 ~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~ 175 (291)
.+|............. ...+-.+..+.+.|.. +|.+..|.+.+|... . .+|++||.|..+
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~--fG~Ied~~ilrd~~~-~---------sRGcaFV~fstk 175 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSR--FGHIEDCYILRDPDG-L---------SRGCAFVKFSTK 175 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHh--hCccchhhheecccc-c---------ccceeEEEEehH
Confidence 8887654432111111 1111123344444443 556777777776542 2 567778877654
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.3e-13 Score=124.90 Aligned_cols=76 Identities=32% Similarity=0.545 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeEEEEe
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRTIRVD 104 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~i~V~ 104 (291)
.+-.+-||||.||.++.|++|..+|++.|+|-.+.|++|+.+|.++|||||+|.+.+. .||+++|- |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3557999999999999999999999999999999999999999999999999999887 89999885 7888887
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
.+.
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 664
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.2e-13 Score=119.02 Aligned_cols=77 Identities=32% Similarity=0.563 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
..+.|.|..||..+|+++|+.+|+..|+|++|+|++|+.||++.||+||.|.++++ .|||..|..+.|+|.+|.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34689999999999999999999999999999999999999999999999999887 899999999999999997
Q ss_pred Ccc
Q 022814 108 KYK 110 (291)
Q Consensus 108 ~~~ 110 (291)
|..
T Consensus 120 PSs 122 (360)
T KOG0145|consen 120 PSS 122 (360)
T ss_pred CCh
Confidence 754
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=3.7e-13 Score=95.70 Aligned_cols=64 Identities=41% Similarity=0.778 Sum_probs=57.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 38 lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
|||+|||+.+++++|.++|+.||.|..|.++.++. +.++|+|||+|.++++ .+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 9999999999999987 6677999999874
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.45 E-value=5.7e-14 Score=115.12 Aligned_cols=75 Identities=29% Similarity=0.587 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
....|||||||+..++++.|.++|-++|+|+.|+|+.|..|....|||||+|.++++ -||.+.|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 446899999999999999999999999999999999999999999999999999887 78999999999999988
Q ss_pred C
Q 022814 107 A 107 (291)
Q Consensus 107 ~ 107 (291)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=8.6e-14 Score=120.44 Aligned_cols=76 Identities=30% Similarity=0.603 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~ 108 (291)
..-||||-|.+.++-++|++.|.+||+|.+++||+|..|++++|||||.|...++ .|||+-|+++.|.-+||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 3469999999999999999999999999999999999999999999999998776 9999999999999999976
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 55
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=7.5e-13 Score=130.58 Aligned_cols=132 Identities=26% Similarity=0.476 Sum_probs=97.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC----CeEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL----GRTI 101 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~----gr~i 101 (291)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++ .|+|..|. |..|
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999986 79999999999999887 79999999 9999
Q ss_pred EEeccCCccccchhHHHHHHhhh---------------------hhhccccccccCCCCCCCceeEeecCCCCCCCCCCC
Q 022814 102 RVDHVAKYKKKEEEDEETRQRMR---------------------EERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGP 160 (291)
Q Consensus 102 ~V~~a~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~ 160 (291)
.|..+.................. ....+...|. .+|.+..|.+..+ .++.
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~--~~G~i~~~~i~~d-~~g~------ 324 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS--ECGEITSAKVMLD-EKGV------ 324 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH--hcCCeEEEEEEEC-CCCC------
Confidence 99888665443221111111000 1222333333 4778888988887 3444
Q ss_pred CCCCCCCCCCCccCCC
Q 022814 161 QDRSSRWGHEKFEGFS 176 (291)
Q Consensus 161 ~~~~~g~g~~~~~~~~ 176 (291)
.+|||||.|....
T Consensus 325 ---~~g~gfV~f~~~~ 337 (562)
T TIGR01628 325 ---SRGFGFVCFSNPE 337 (562)
T ss_pred ---cCCeEEEEeCCHH
Confidence 5678888887643
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=3.8e-13 Score=124.79 Aligned_cols=72 Identities=26% Similarity=0.533 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcCh--hh------hcCCceeCCeEEEEec
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ--RN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~--~~------~lng~~i~gr~i~V~~ 105 (291)
...+||||||++.+|+++|..+|+.||.|..|.||+. || +|||||+|... .+ .|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4578999999999999999999999999999999944 67 99999999986 22 8999999999999999
Q ss_pred cCCc
Q 022814 106 VAKY 109 (291)
Q Consensus 106 a~~~ 109 (291)
|.+.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8653
No 33
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-13 Score=116.31 Aligned_cols=82 Identities=37% Similarity=0.599 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
.....+|||||+|...++|.-|...|-+||.|+.|.|+.|..+++.+|||||+|...++ .||+.+|.|+.|.|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999999999999999999998887 899999999999999
Q ss_pred ccCCcccc
Q 022814 105 HVAKYKKK 112 (291)
Q Consensus 105 ~a~~~~~~ 112 (291)
+|.|...+
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99887654
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=115.12 Aligned_cols=74 Identities=43% Similarity=0.829 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~ 108 (291)
..+|||+|||+.+|+++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++ .|++..|.|++|.|..+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999987 8999999999999999753
No 35
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.3e-12 Score=115.82 Aligned_cols=73 Identities=30% Similarity=0.627 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
-.+.|+|.|||+...+-||..+|++||.|.+|.||.+. --|||||||+|++.++ +|+|..|.|++|.|+.+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 35799999999999999999999999999999999874 5689999999999987 999999999999999886
Q ss_pred C
Q 022814 108 K 108 (291)
Q Consensus 108 ~ 108 (291)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 5
No 36
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.5e-12 Score=89.33 Aligned_cols=66 Identities=42% Similarity=0.832 Sum_probs=60.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
+|||+|||+.+++++|..+|.+||.|..|.++.+. +.+.|+|||+|.+.++ .|++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999999876 7889999999999877 789999999998873
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.8e-12 Score=111.13 Aligned_cols=75 Identities=31% Similarity=0.558 Sum_probs=68.8
Q ss_pred cccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEE
Q 022814 28 WHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTI 101 (291)
Q Consensus 28 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i 101 (291)
.++..+++++||||||+..+||+.|+..|++||.|.+|+|..+ +|||||-|++.|+ .||+.+|.|..+
T Consensus 157 ~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~V 230 (321)
T KOG0148|consen 157 YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLV 230 (321)
T ss_pred hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEE
Confidence 3456789999999999999999999999999999999999988 6899999999998 899999999999
Q ss_pred EEeccCC
Q 022814 102 RVDHVAK 108 (291)
Q Consensus 102 ~V~~a~~ 108 (291)
++-|-..
T Consensus 231 kCsWGKe 237 (321)
T KOG0148|consen 231 RCSWGKE 237 (321)
T ss_pred EEecccc
Confidence 9988653
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.34 E-value=2e-12 Score=125.87 Aligned_cols=70 Identities=21% Similarity=0.458 Sum_probs=57.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcC------------CCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCc
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQC------------GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGA 94 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~------------G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~ 94 (291)
.....+|||||||+.||+++|.++|.+| +.|..|.+ +..+|||||+|.+.++ +|||+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 3456899999999999999999999975 23333333 4558999999999887 89999
Q ss_pred eeCCeEEEEeccC
Q 022814 95 QILGRTIRVDHVA 107 (291)
Q Consensus 95 ~i~gr~i~V~~a~ 107 (291)
.|.|.+|.|....
T Consensus 246 ~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 IYSNVFLKIRRPH 258 (509)
T ss_pred EeeCceeEecCcc
Confidence 9999999997543
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=2.5e-12 Score=121.16 Aligned_cols=76 Identities=41% Similarity=0.809 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~ 109 (291)
++|||||||+.+++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+. .|||.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999776 89999999999999998765
Q ss_pred cc
Q 022814 110 KK 111 (291)
Q Consensus 110 ~~ 111 (291)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 40
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.9e-12 Score=101.36 Aligned_cols=79 Identities=34% Similarity=0.588 Sum_probs=72.4
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
++.....=.|||.++...+||++|.+.|..||+|+.|.|..|.-||..+|||+|+|++.+. +|||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3445556689999999999999999999999999999999999999999999999999876 8999999999999
Q ss_pred EeccC
Q 022814 103 VDHVA 107 (291)
Q Consensus 103 V~~a~ 107 (291)
|+|+.
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 99874
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=8.6e-12 Score=86.94 Aligned_cols=65 Identities=48% Similarity=0.863 Sum_probs=60.2
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 40 VgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
|+|||+.+++++|..+|.+||.|..|.|+.++.++.++|||||+|.+.++ .|++..|.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999887 788899999998873
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.2e-11 Score=101.72 Aligned_cols=72 Identities=32% Similarity=0.596 Sum_probs=63.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
...++|||||||..+.+.+|+++|.+||.|..|.|..-+ -+.+||||+|+++-+ .-+|..++|+.|.|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 357899999999999999999999999999999886432 356799999998766 67889999999999988
Q ss_pred C
Q 022814 107 A 107 (291)
Q Consensus 107 ~ 107 (291)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 5
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=1.2e-12 Score=107.32 Aligned_cols=103 Identities=25% Similarity=0.447 Sum_probs=84.0
Q ss_pred CCcHHHHHHHhhhchhhhccCCCCCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceE
Q 022814 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGF 79 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~-i~i~~d~~tg~s~G~ 79 (291)
||++.++++++..+... +. +........|||+||.+.+.|..|.++|+.||.|.. ..|+++..||.++||
T Consensus 71 ln~VkLYgrpIrv~kas-~~--------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~ 141 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKAS-AH--------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGF 141 (203)
T ss_pred HHHHHhcCceeEEEecc-cc--------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCC
Confidence 46666777666665443 11 223455689999999999999999999999999865 488999999999999
Q ss_pred EEEEEcChhh------hcCCceeCCeEEEEeccCCcccc
Q 022814 80 AFVAYEDQRN------NLNGAQILGRTIRVDHVAKYKKK 112 (291)
Q Consensus 80 aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~~~~ 112 (291)
|||.|.+.++ +|||+.++.++|.|.++.....+
T Consensus 142 g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 142 GFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred eEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999999887 99999999999999998655444
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.28 E-value=1.2e-11 Score=119.88 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh--------hcCCceeCCeEEEEec
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~--------~lng~~i~gr~i~V~~ 105 (291)
|+.+|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++ .+++..|.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999999854 5899999999887 2578999999999999
Q ss_pred cCCc
Q 022814 106 VAKY 109 (291)
Q Consensus 106 a~~~ 109 (291)
+...
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8643
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.5e-11 Score=115.56 Aligned_cols=78 Identities=33% Similarity=0.567 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----------hcCC-ceeCCeEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----------NLNG-AQILGRTI 101 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----------~lng-~~i~gr~i 101 (291)
...||||.|||+.+|++.|.+.|++||+|.++.|+.++.||.++|.|||.|.++.+ +-.| ++|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 34899999999999999999999999999999999999999999999999999887 1334 88999999
Q ss_pred EEeccCCccc
Q 022814 102 RVDHVAKYKK 111 (291)
Q Consensus 102 ~V~~a~~~~~ 111 (291)
.|..+.....
T Consensus 371 kv~~Av~Rke 380 (678)
T KOG0127|consen 371 KVTLAVTRKE 380 (678)
T ss_pred eeeeccchHH
Confidence 9998865543
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.27 E-value=4.9e-12 Score=114.48 Aligned_cols=77 Identities=30% Similarity=0.623 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
..++||||+|+|.|+++.|.++|++||+|..|.|++|+.|+.++||+||+|++.+. ...-+.|+++.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999998776 3345778999999888766
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 54
No 47
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.6e-11 Score=112.12 Aligned_cols=135 Identities=19% Similarity=0.399 Sum_probs=95.7
Q ss_pred CCCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee
Q 022814 23 SDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI 96 (291)
Q Consensus 23 ~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i 96 (291)
+--.+|.+..+.. |||.||+++++...|.++|+.||+|++|+|+.+. .| ++|| ||+|++.++ .|||.++
T Consensus 66 ~~rim~s~rd~~~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 66 PIRIMWSQRDPSL--VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred EEEeehhccCCce--eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 3334555544333 9999999999999999999999999999999997 45 9999 999999887 8999999
Q ss_pred CCeEEEEeccCCccccchhHHHHHHhhhh-----------hhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCC
Q 022814 97 LGRTIRVDHVAKYKKKEEEDEETRQRMRE-----------ERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSS 165 (291)
Q Consensus 97 ~gr~i~V~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~ 165 (291)
.++.|.|..........+...+....... ...+...| ...|.+.++.+..+.... ..
T Consensus 141 ~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f--~~~g~i~s~~v~~~~~g~----------~~ 208 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF--SAYGSITSVAVMRDSIGK----------SK 208 (369)
T ss_pred CCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhh--cccCcceEEEEeecCCCC----------CC
Confidence 99999999887665544333321111110 11222222 335567777766655432 45
Q ss_pred CCCCCCccC
Q 022814 166 RWGHEKFEG 174 (291)
Q Consensus 166 g~g~~~~~~ 174 (291)
+||++.|..
T Consensus 209 ~~gfv~f~~ 217 (369)
T KOG0123|consen 209 GFGFVNFEN 217 (369)
T ss_pred CccceeecC
Confidence 788888876
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.26 E-value=2e-11 Score=118.33 Aligned_cols=73 Identities=21% Similarity=0.409 Sum_probs=65.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 32 YKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 32 ~~~~~~lfVgnL~~-~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
.+++++|||+|||+ .+|+++|.++|+.||.|..|.|+.++ +|||||+|.+.++ .|||..|.|++|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 35778999999998 69999999999999999999999874 6999999999887 799999999999999
Q ss_pred ccCCc
Q 022814 105 HVAKY 109 (291)
Q Consensus 105 ~a~~~ 109 (291)
++...
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87543
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.25 E-value=4.8e-12 Score=119.06 Aligned_cols=78 Identities=33% Similarity=0.664 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.|...||||||.+++++++|..+|++||.|..|.++.|..||.++|||||+|.+.+. .|||.+|.|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 455559999999999999999999999999999999999999999999999999887 89999999999999877
Q ss_pred CCcc
Q 022814 107 AKYK 110 (291)
Q Consensus 107 ~~~~ 110 (291)
....
T Consensus 356 ~~r~ 359 (549)
T KOG0147|consen 356 TERV 359 (549)
T ss_pred eeec
Confidence 5543
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.6e-11 Score=83.20 Aligned_cols=68 Identities=46% Similarity=0.855 Sum_probs=61.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
+|||+|||+.+++++|..+|..||.|..+.++.++.+ .+.|+|||+|.+.++ .+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988744 789999999999887 7889999999998863
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=7.6e-12 Score=114.60 Aligned_cols=82 Identities=27% Similarity=0.487 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCc-eeC--CeEEEE
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGA-QIL--GRTIRV 103 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~-~i~--gr~i~V 103 (291)
+...+||||-|+..+||.+|+++|++||.|++|.|++|. .+.++|||||.|.+.+. +|||. .+. ..+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999998 79999999999999876 88884 444 479999
Q ss_pred eccCCccccchh
Q 022814 104 DHVAKYKKKEEE 115 (291)
Q Consensus 104 ~~a~~~~~~~~~ 115 (291)
.||...+.+..+
T Consensus 201 kFADtqkdk~~~ 212 (510)
T KOG0144|consen 201 KFADTQKDKDGK 212 (510)
T ss_pred EecccCCCchHH
Confidence 999887666543
No 52
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=6.9e-11 Score=88.56 Aligned_cols=75 Identities=27% Similarity=0.473 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
.+..|||+|||+.+|.+++.++|.+||.|..|.|-..+ ..+|-|||.|++..+ .|+|..++++.+.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 35789999999999999999999999999999997654 458999999999876 899999999999999887
Q ss_pred Cccc
Q 022814 108 KYKK 111 (291)
Q Consensus 108 ~~~~ 111 (291)
+...
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6543
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.21 E-value=5.4e-11 Score=116.19 Aligned_cols=70 Identities=29% Similarity=0.480 Sum_probs=63.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQC--GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
...+|||+||++.+++++|+++|++| |+|+.|.++ ++||||+|.+.++ +||+.+|+|+.|.|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999999876 3599999999887 7999999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 977543
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3e-11 Score=113.57 Aligned_cols=77 Identities=31% Similarity=0.592 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
+.-.|+|.||||.+.+.+|+.+|+.||.|..|.|++.+. |+-+|||||.|....+ .||+.+|+|++|-|+||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 356899999999999999999999999999999998774 5555999999998776 899999999999999997
Q ss_pred Cccc
Q 022814 108 KYKK 111 (291)
Q Consensus 108 ~~~~ 111 (291)
+...
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 6543
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=9.8e-11 Score=101.15 Aligned_cols=73 Identities=27% Similarity=0.463 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
.=.|||-||.+++.|.-|-.+|++||.|..|+|++|..|.+++|||||++.+-++ .|||..++++.|.|.|-.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 3489999999999999999999999999999999999999999999999998765 899999999999998754
No 56
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.15 E-value=8.2e-11 Score=98.58 Aligned_cols=81 Identities=26% Similarity=0.484 Sum_probs=73.4
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQC-GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTI 101 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i 101 (291)
.+.......+||..||..+-+.+|..+|.+| |.|..+.+.+++.||.++|||||+|++.+. +||+++|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445667889999999999999999999998 788888888999999999999999999886 999999999999
Q ss_pred EEeccCCc
Q 022814 102 RVDHVAKY 109 (291)
Q Consensus 102 ~V~~a~~~ 109 (291)
.|.+..+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99998766
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.1e-11 Score=104.53 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..++.|.|||-.||.+.++.+|..+|-+||.|++.+|..|..|.++++|+||.|.++.+ +|||+.|+-+.|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999887 999999999999998
Q ss_pred ccCCc
Q 022814 105 HVAKY 109 (291)
Q Consensus 105 ~a~~~ 109 (291)
+-.++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 76544
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.7e-11 Score=111.32 Aligned_cols=119 Identities=24% Similarity=0.397 Sum_probs=90.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~ 109 (291)
..|||| +.+|+..|.++|+++|+|++|.|++|. | +.|||||.|.++.+ +||...|.|++|.|.|++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 469999 899999999999999999999999998 6 99999999999987 89999999999999999765
Q ss_pred cccchhHHHHHHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 110 KKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
....-.. .....-+...+...|. .+|.+.+|+++.+... .+|| ||.|....
T Consensus 76 ~~~~~i~--nl~~~~~~~~~~d~f~--~~g~ilS~kv~~~~~g-----------~kg~-FV~f~~e~ 126 (369)
T KOG0123|consen 76 PSLVFIK--NLDESIDNKSLYDTFS--EFGNILSCKVATDENG-----------SKGY-FVQFESEE 126 (369)
T ss_pred Cceeeec--CCCcccCcHHHHHHHH--hhcCeeEEEEEEcCCC-----------ceee-EEEeCCHH
Confidence 4431000 0000001223333332 4778999999998654 5678 99987644
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=7.1e-11 Score=108.71 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=65.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~ 109 (291)
..|||.||+.+|||+.|+++|++||.|..|..++| ||||.|.+.++ .|||++|+|..|.|.+|.+.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 68999999999999999999999999999998877 99999999988 89999999999999999887
Q ss_pred cccc
Q 022814 110 KKKE 113 (291)
Q Consensus 110 ~~~~ 113 (291)
.++.
T Consensus 332 ~k~k 335 (506)
T KOG0117|consen 332 DKKK 335 (506)
T ss_pred hhhc
Confidence 6544
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=7.3e-11 Score=103.40 Aligned_cols=68 Identities=29% Similarity=0.622 Sum_probs=61.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~ 109 (291)
.+|||||||..+++.+|+.+|++||+|++|.||++ ||||..++... .|+|..|+|..|.|+.+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999966 99999988765 79999999999999998776
Q ss_pred cc
Q 022814 110 KK 111 (291)
Q Consensus 110 ~~ 111 (291)
.+
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 61
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=3.3e-10 Score=109.56 Aligned_cols=73 Identities=22% Similarity=0.461 Sum_probs=64.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~t---g~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++|||.||++.+|.++|..+|...|.|.+|.|...+.. -.|.|||||+|.+.++ +|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765421 2467999999999997 8999999999999999
Q ss_pred cC
Q 022814 106 VA 107 (291)
Q Consensus 106 a~ 107 (291)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 97
No 62
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=9.1e-10 Score=78.48 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=49.2
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 49 EGDLLAVFA----QCGEIVDVN-LVRDKGT--GKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 49 e~~L~~~F~----~~G~I~~i~-i~~d~~t--g~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
+++|.++|+ +||.|..|. |+.++.+ +.++|||||+|.+.++ .|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999995 7777666 9999999999999987 79999999999986
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.4e-09 Score=97.44 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=68.2
Q ss_pred cccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-------hcCCceeCC
Q 022814 26 ASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-------NLNGAQILG 98 (291)
Q Consensus 26 ~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-------~lng~~i~g 98 (291)
..|.+......||||++|...++|.+|.+.|.+||+|.+|.|+.. +++|||+|.+..+ .+|-..|+|
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc
Confidence 355566667789999999999999999999999999999998765 4699999999887 778889999
Q ss_pred eEEEEeccCC
Q 022814 99 RTIRVDHVAK 108 (291)
Q Consensus 99 r~i~V~~a~~ 108 (291)
..|+|.|..+
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999999987
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.96 E-value=6.1e-10 Score=97.69 Aligned_cols=72 Identities=26% Similarity=0.494 Sum_probs=65.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
+....++||||||.+.++..+|+..|++||+|..|.|+.| |+||.|.-.++ .||+.++.|++++|+
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 4668899999999999999999999999999999999965 99999998776 899999999999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 146 ~stsrl 151 (346)
T KOG0109|consen 146 LSTSRL 151 (346)
T ss_pred eecccc
Confidence 987654
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.95 E-value=2.5e-09 Score=72.63 Aligned_cols=50 Identities=36% Similarity=0.741 Sum_probs=44.3
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 52 LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 52 L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
|..+|++||+|..|.+.... .++|||+|.+.++ .|||..|+|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997654 6899999999887 79999999999999875
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=1.9e-09 Score=97.81 Aligned_cols=79 Identities=30% Similarity=0.558 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
...+||||+||+.+++++|+++|.+||.|..+.|+.|..+..++||+||+|.+.++ ....+.|+++.+.|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46699999999999999999999999999999999999999999999999999888 5666889999999999987
Q ss_pred cccc
Q 022814 109 YKKK 112 (291)
Q Consensus 109 ~~~~ 112 (291)
....
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 7554
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=7.2e-10 Score=99.87 Aligned_cols=75 Identities=29% Similarity=0.520 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
...+.|||..+.++.+|++|+.+|+.||+|++|.|.+++.++..+||+||+|.+..+ .||-+.|+|..|.|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 346899999999999999999999999999999999999889999999999998765 89999999999999866
Q ss_pred C
Q 022814 107 A 107 (291)
Q Consensus 107 ~ 107 (291)
.
T Consensus 288 v 288 (544)
T KOG0124|consen 288 V 288 (544)
T ss_pred c
Confidence 4
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.87 E-value=5.2e-09 Score=89.05 Aligned_cols=77 Identities=23% Similarity=0.487 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHH----HHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLA----VFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTI 101 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~----~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i 101 (291)
..++.||||.||+.-+..++|+. +|++||.|..|.+.. |.+.+|-|||.|.+.++ +|+|..+.|+++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34566999999999999998887 999999999887654 67899999999999765 999999999999
Q ss_pred EEeccCCccc
Q 022814 102 RVDHVAKYKK 111 (291)
Q Consensus 102 ~V~~a~~~~~ 111 (291)
.|.+|.....
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999976543
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.84 E-value=2.7e-08 Score=91.68 Aligned_cols=76 Identities=32% Similarity=0.498 Sum_probs=68.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
.......+||.|||+++.+.+|+++|. +.|+|++|.|..|. +|+++|||.|+|.+++. .||-+.+.|++|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 344566799999999999999999996 68999999999997 89999999999999987 89999999999999
Q ss_pred eccC
Q 022814 104 DHVA 107 (291)
Q Consensus 104 ~~a~ 107 (291)
+-..
T Consensus 119 KEd~ 122 (608)
T KOG4212|consen 119 KEDH 122 (608)
T ss_pred eccC
Confidence 7553
No 70
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=3.6e-08 Score=92.73 Aligned_cols=74 Identities=28% Similarity=0.431 Sum_probs=61.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
....+|||.|||+++++++|+++|.+||.|+...|..-...++..+||||+|.+.++ ..+-..|+++.|.|.--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 345679999999999999999999999999988776543345555999999999887 55578899999999643
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=6.8e-09 Score=101.39 Aligned_cols=76 Identities=30% Similarity=0.511 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
...++|||||.|+..++|.+|..+|+.||+|.+|.|+-. +|||||.+....+ +|+.+.|.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 345789999999999999999999999999999998765 7899999988665 8999999999999999
Q ss_pred cCCccccc
Q 022814 106 VAKYKKKE 113 (291)
Q Consensus 106 a~~~~~~~ 113 (291)
+.....+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 98776554
No 72
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=6.8e-09 Score=90.75 Aligned_cols=77 Identities=34% Similarity=0.568 Sum_probs=71.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
+...+...+||+|+.+.+|.++|+..|+.||.|..|.|+.|..+|+++|||||+|.+.+. .||+..|.+..|.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 456788999999999999999999999999999999999999999999999999999887 889999999999997
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
+.
T Consensus 176 ~~ 177 (231)
T KOG4209|consen 176 LK 177 (231)
T ss_pred ee
Confidence 65
No 73
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.74 E-value=2.9e-09 Score=100.51 Aligned_cols=125 Identities=18% Similarity=0.323 Sum_probs=93.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
-+-.|||+-.|+..+++-+|.++|+.+|+|..|.||.|..++.++|.|||+|.+..+ +|.|+.+.|.+|.|..++
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 345799999999999999999999999999999999999999999999999999887 999999999999999876
Q ss_pred CccccchhHHHHHHhhh-----------------hhhccccccccCCCCCCCceeEeecCCCCCCCCCC
Q 022814 108 KYKKKEEEDEETRQRMR-----------------EERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG 159 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g 159 (291)
..+...+...+....+. .+..+... ...+|.+.-+.+..|..+|.++|||
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~i--fepfg~Ie~v~l~~d~~tG~skgfG 323 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGI--FEPFGKIENVQLTKDSETGRSKGFG 323 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhh--ccCcccceeeeeccccccccccCcc
Confidence 55544222221111110 00001111 2356667777778887788855554
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=3.3e-08 Score=86.46 Aligned_cols=79 Identities=25% Similarity=0.503 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..-+.+|+|.|||+.+++++|+++|..||.+..+.|.+++ +|.+.|.|-|.|...++ .+|++.|+|++|+|..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445889999999999999999999999999999998888 89999999999999855 8999999999999988
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 765543
No 75
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.69 E-value=3.3e-08 Score=93.71 Aligned_cols=77 Identities=21% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.....|||.+|...|...+|+.||++||.|+-..|+++.-+.-.++|+||++.+... .|+-++|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 446799999999999999999999999999999999998788889999999998776 78889999999999988
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
...
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 654
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=7.5e-09 Score=87.58 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.+...||||+||...++|+-|.++|-+.|+|..|.|+.++ .+..+ ||||+|.++.+ .|||..+.+.+|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 4557899999999999999999999999999999998877 56677 99999999887 8899999999999987
Q ss_pred cCCc
Q 022814 106 VAKY 109 (291)
Q Consensus 106 a~~~ 109 (291)
-...
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6544
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=3.2e-08 Score=96.09 Aligned_cols=80 Identities=26% Similarity=0.536 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
..++|+|.|||+.++..+|+.+|+.||.|.+|.|+.-...+.++|||||+|-++.. +|..+.|.|+.|.+.|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 36799999999999999999999999999999999876567789999999999766 677899999999999998
Q ss_pred Cccccc
Q 022814 108 KYKKKE 113 (291)
Q Consensus 108 ~~~~~~ 113 (291)
......
T Consensus 692 ~d~~~e 697 (725)
T KOG0110|consen 692 SDNTME 697 (725)
T ss_pred cchHHH
Confidence 766543
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=4.4e-08 Score=85.22 Aligned_cols=77 Identities=25% Similarity=0.478 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCce-eC--CeEEEEe
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQ-IL--GRTIRVD 104 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~-i~--gr~i~V~ 104 (291)
+..+||||-|+..-.|++++.+|..||.|.+|.|.+.. .|.++|||||.|.+..+ .|+|.. +- ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999887 79999999999998766 566632 32 3678888
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++...+.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 8865443
No 79
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=5.8e-07 Score=67.86 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=62.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC----CeEEEE
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQ--CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL----GRTIRV 103 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~--~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~----gr~i~V 103 (291)
+||.|.|||...|.++|.+++.. .|....+.|+.|..++-+.|||||.|.+++. .++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999865 4788999999999999999999999999987 88888775 455666
Q ss_pred eccC
Q 022814 104 DHVA 107 (291)
Q Consensus 104 ~~a~ 107 (291)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6653
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.44 E-value=7.5e-07 Score=80.18 Aligned_cols=80 Identities=31% Similarity=0.635 Sum_probs=67.3
Q ss_pred cccCCCC-CCEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEEcChhh------hcC
Q 022814 28 WHAKYKD-SAYVYVGGIPFDLTEGDLLAVFAQCGEIV--------DVNLVRDKGTGKPRGFAFVAYEDQRN------NLN 92 (291)
Q Consensus 28 ~~~~~~~-~~~lfVgnL~~~~te~~L~~~F~~~G~I~--------~i~i~~d~~tg~s~G~aFV~F~~~~~------~ln 92 (291)
|....+. ++.|||.|||..+|.+++.++|++||.|. .|.|.++. .|+.+|=|.|.|...++ .|+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC
Confidence 4433333 45599999999999999999999999874 46777777 59999999999999888 899
Q ss_pred CceeCCeEEEEeccCC
Q 022814 93 GAQILGRTIRVDHVAK 108 (291)
Q Consensus 93 g~~i~gr~i~V~~a~~ 108 (291)
+..|.|+.|.|..|+-
T Consensus 205 e~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKF 220 (382)
T ss_pred cccccCcEEEEehhhh
Confidence 9999999999998843
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=2.5e-07 Score=88.30 Aligned_cols=80 Identities=30% Similarity=0.529 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
....+.|||++||..+++.++.++...||.+....++.+..+|.++||||.+|.++.. .|||..+++..|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3456899999999999999999999999999999999999999999999999998765 8999999999999998
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
|.....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 865443
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.41 E-value=4.1e-07 Score=84.06 Aligned_cols=71 Identities=24% Similarity=0.494 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
.....|+|||.|||+++|+..|++-|..||.|.++.|+. .|+++| .|.|.++++ .|||..|+|+.|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 446678999999999999999999999999999999843 588888 888888876 899999999999998
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=3.6e-07 Score=78.42 Aligned_cols=65 Identities=34% Similarity=0.727 Sum_probs=57.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCC
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~ 108 (291)
..||||+||+.+.+.+|+.+|..||.|..|.|. .||+||+|.+.-+ .||+..|++-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999999999999999875 5699999999776 8999999998888888764
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=3.7e-07 Score=79.04 Aligned_cols=78 Identities=23% Similarity=0.496 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.+.-.||.|-|.-.++++.|-..|.+|-.-....+++++-||+++||+||.|.+..+ +|||..++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 355799999999999999999999999888888999999999999999999999988 99999999999998876
Q ss_pred CCcc
Q 022814 107 AKYK 110 (291)
Q Consensus 107 ~~~~ 110 (291)
....
T Consensus 268 ~wke 271 (290)
T KOG0226|consen 268 EWKE 271 (290)
T ss_pred hHHh
Confidence 5443
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.16 E-value=3.6e-06 Score=82.04 Aligned_cols=75 Identities=20% Similarity=0.419 Sum_probs=64.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG---TGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~---tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
.|..+.|||+||++.++++.|...|+.||+|..|.|+.... .....-||||.|-+..+ .|+|+.|....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45568999999999999999999999999999999876542 23456799999988775 8999999999999
Q ss_pred Eecc
Q 022814 103 VDHV 106 (291)
Q Consensus 103 V~~a 106 (291)
+.|+
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 9887
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.13 E-value=9.4e-06 Score=69.23 Aligned_cols=79 Identities=20% Similarity=0.346 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEEcChhh------hcCCceeC---CeEEE
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD-KGTGKPRGFAFVAYEDQRN------NLNGAQIL---GRTIR 102 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d-~~tg~s~G~aFV~F~~~~~------~lng~~i~---gr~i~ 102 (291)
..-+||||.+||.++..-+|..+|-.|--.+.+.|... +....++-+|||+|.+... +|||+.++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999866666666543 3223456799999999776 89999997 68899
Q ss_pred EeccCCccc
Q 022814 103 VDHVAKYKK 111 (291)
Q Consensus 103 V~~a~~~~~ 111 (291)
|+++....+
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999876544
No 87
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.05 E-value=2.1e-06 Score=77.62 Aligned_cols=77 Identities=34% Similarity=0.587 Sum_probs=67.8
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh---hcC--CceeCCeEEEEeccC
Q 022814 34 DSAYVY-VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NLN--GAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lf-VgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~ln--g~~i~gr~i~V~~a~ 107 (291)
+..++| |++|++.+++++|...|..+|.|..+.++.+..++.++|||||.|..... +|+ ...|.++++.|....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 445566 99999999999999999999999999999999999999999999999877 555 788999999998876
Q ss_pred Ccc
Q 022814 108 KYK 110 (291)
Q Consensus 108 ~~~ 110 (291)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 543
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=4.6e-06 Score=79.39 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=58.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
+..+..+|||-|||..+++++|..+|+.||+|..|..... ..|.+||+|-+.-+ +|++..|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3566789999999999999999999999999999766444 48999999998665 8899999998887
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.93 E-value=2.9e-05 Score=73.05 Aligned_cols=73 Identities=26% Similarity=0.514 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
....|=+.+|||++|+++|.++|+.|+ |..+.+++. +|++.|-|||+|.++++ +.+-..+..+.|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 344566889999999999999999995 777666654 79999999999999988 6677888899999987744
Q ss_pred c
Q 022814 109 Y 109 (291)
Q Consensus 109 ~ 109 (291)
.
T Consensus 86 ~ 86 (510)
T KOG4211|consen 86 A 86 (510)
T ss_pred c
Confidence 3
No 90
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.93 E-value=8.9e-06 Score=73.81 Aligned_cols=78 Identities=35% Similarity=0.561 Sum_probs=67.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEEcChhh------hcCCcee
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--------DVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI 96 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~--------~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i 96 (291)
......+|||-+||..+++++|.++|.+||.|. .|.|-+++.|+.++|-|.|+|.+..+ -+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 356678999999999999999999999999884 56778899999999999999999876 6788888
Q ss_pred CCeEEEEeccCC
Q 022814 97 LGRTIRVDHVAK 108 (291)
Q Consensus 97 ~gr~i~V~~a~~ 108 (291)
.+..|+|-++..
T Consensus 142 ~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 142 CGNTIKVSLAER 153 (351)
T ss_pred cCCCchhhhhhh
Confidence 898888877753
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.88 E-value=3.4e-05 Score=69.71 Aligned_cols=69 Identities=23% Similarity=0.465 Sum_probs=57.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G--~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
-.+|||||-|.||+++|.+.+...| .|..+++..+..+|+++|||+|...+..+ .|.-.+|.|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3799999999999999999988766 46777778888899999999999988666 566677888766654
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.77 E-value=0.00011 Score=62.86 Aligned_cols=72 Identities=21% Similarity=0.385 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRTIR 102 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~i~ 102 (291)
...++..+||+.|||..++.+.|..+|.+|.--..|.++... .+.|||+|.+... ++.+..|- ...+.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 446888999999999999999999999999988999888765 7899999998654 66666665 66777
Q ss_pred Eecc
Q 022814 103 VDHV 106 (291)
Q Consensus 103 V~~a 106 (291)
|.++
T Consensus 216 i~~a 219 (221)
T KOG4206|consen 216 ITFA 219 (221)
T ss_pred eccc
Confidence 7665
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.53 E-value=6.3e-05 Score=64.27 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=40.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.+.||||.||.+++||++|+.+|+.|--..-++|-. + .| ...|||+|++.+.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g--~~vaf~~~~~~~~ 260 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GG--MPVAFADFEEIEQ 260 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CC--cceEeecHHHHHH
Confidence 467999999999999999999999996554444432 1 22 4589999998776
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.49 E-value=0.00029 Score=65.05 Aligned_cols=70 Identities=20% Similarity=0.426 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 35 SAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 35 ~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
+++|.|.||+.. +|.+.|-.+|+-||.|..|.|..++ +--|.|.|.+... .|+|+.|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 588999999885 8999999999999999999999887 3579999999765 899999999999999986
Q ss_pred Cc
Q 022814 108 KY 109 (291)
Q Consensus 108 ~~ 109 (291)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00032 Score=66.61 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=56.3
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.+...+..|||||+||--++.++|-.||. -||.|..+-|=+|+.-+.++|-|=|+|.+..+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqs 425 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQA 425 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHH
Confidence 34567889999999999999999999999 69999999999998889999999999999988
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.40 E-value=0.00039 Score=65.64 Aligned_cols=73 Identities=34% Similarity=0.513 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEEcChhh---hcC--CceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGFAFVAYEDQRN---NLN--GAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~-i~i~~d~~tg~s~G~aFV~F~~~~~---~ln--g~~i~gr~i~V~~a~ 107 (291)
+..+|=+.+||+.||+++|.++|+..=.|.. |.|+.+. .+.+.|-|||.|++++. +|. -..|+.+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4568889999999999999999997643333 5566666 68899999999999998 444 467888999997664
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.38 E-value=0.00062 Score=61.54 Aligned_cols=75 Identities=21% Similarity=0.461 Sum_probs=55.5
Q ss_pred CCCCEEEEcCCCCCCCHHH----H--HHHHhcCCCeeEEEEeecCCC-CCcceEE--EEEEcChhh------hcCCceeC
Q 022814 33 KDSAYVYVGGIPFDLTEGD----L--LAVFAQCGEIVDVNLVRDKGT-GKPRGFA--FVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~----L--~~~F~~~G~I~~i~i~~d~~t-g~s~G~a--FV~F~~~~~------~lng~~i~ 97 (291)
...+-+||-+||+.+..++ | .++|++||.|..|.|.+-..+ ....+.+ ||+|...++ +.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999998766655 3 389999999998877543211 1222333 999999887 89999999
Q ss_pred CeEEEEeccC
Q 022814 98 GRTIRVDHVA 107 (291)
Q Consensus 98 gr~i~V~~a~ 107 (291)
|+.|+..+-.
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999987753
No 98
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.35 E-value=1.7e-05 Score=72.67 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=47.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQIL 97 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~ 97 (291)
..||+|++|+..|...+|.++|..+|+|....+.. |...-||-|+|..+.+ .++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 36899999999999999999999999998887753 4446688899998877 45555444
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00025 Score=67.31 Aligned_cols=71 Identities=30% Similarity=0.540 Sum_probs=50.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC--C-CCCcce---EEEEEEcChhh---hcCCceeCCeEEEEec
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK--G-TGKPRG---FAFVAYEDQRN---NLNGAQILGRTIRVDH 105 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~--~-tg~s~G---~aFV~F~~~~~---~lng~~i~gr~i~V~~ 105 (291)
+++||||+||+.++|+.|...|..||.+. |.++... . --.++| |+|+.|+++.+ .|+....+...+.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 57999999999999999999999999864 5555211 1 123566 99999999887 4444444444444443
Q ss_pred c
Q 022814 106 V 106 (291)
Q Consensus 106 a 106 (291)
+
T Consensus 338 s 338 (520)
T KOG0129|consen 338 S 338 (520)
T ss_pred e
Confidence 3
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00094 Score=64.11 Aligned_cols=75 Identities=29% Similarity=0.468 Sum_probs=58.4
Q ss_pred CCCEEEEcCCCCCCCH--H----HHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeE
Q 022814 34 DSAYVYVGGIPFDLTE--G----DLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRT 100 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te--~----~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~ 100 (291)
-...|+|.|+|..-.. + -|..+|+++|+|+.+.++.+..+| ++||.|++|.+..+ .|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3578999999864322 2 344789999999999999888655 99999999999876 89999887 567
Q ss_pred EEEeccCCc
Q 022814 101 IRVDHVAKY 109 (291)
Q Consensus 101 i~V~~a~~~ 109 (291)
+.|......
T Consensus 136 f~v~~f~d~ 144 (698)
T KOG2314|consen 136 FFVRLFKDF 144 (698)
T ss_pred EEeehhhhH
Confidence 777655433
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.03 E-value=0.0004 Score=59.80 Aligned_cols=62 Identities=31% Similarity=0.530 Sum_probs=53.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
..+.|+|-+|+..+.+.+|.++|+++|.+....+ ..++|||+|.++++ .|++..|.++.|.|
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3568889999999999999999999999954433 36799999999987 89999999999999
No 102
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.03 E-value=0.0016 Score=59.99 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=57.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC---CCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK---GTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~---~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
.|-|.||.+++|.+++..+|.-.|+|..+.|.... .-....-.|||-|.+... .|.++.+-++.|.|-.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 79999999999999999999999999999886532 223456689999999876 777777777777776543
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.0004 Score=60.54 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC--------CCcceE----EEEEEcChhh------hcCCce
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT--------GKPRGF----AFVAYEDQRN------NLNGAQ 95 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~t--------g~s~G~----aFV~F~~~~~------~lng~~ 95 (291)
..-.||+++||+.+...-|++||+.||+|-.|.|.....+ |.+..+ |+|+|.+... .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999998776544 344443 5688987654 899999
Q ss_pred eCCeE
Q 022814 96 ILGRT 100 (291)
Q Consensus 96 i~gr~ 100 (291)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 104
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.00 E-value=0.0015 Score=50.22 Aligned_cols=64 Identities=17% Similarity=0.335 Sum_probs=37.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh--------hcC---CceeCCeEEEEe
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--------NLN---GAQILGRTIRVD 104 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~--------~ln---g~~i~gr~i~V~ 104 (291)
+.|+|.+|+..++-++|+++|++||.|.+|.+.... --|||-|.++++ ... +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568898999999999999999999999999887642 279999999865 222 455666655554
Q ss_pred c
Q 022814 105 H 105 (291)
Q Consensus 105 ~ 105 (291)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.96 E-value=0.00053 Score=63.75 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=48.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec---CCC--CC--------cceEEEEEEcChhh
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD---KGT--GK--------PRGFAFVAYEDQRN 89 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d---~~t--g~--------s~G~aFV~F~~~~~ 89 (291)
...+..||.|+|||.+-.-+.|.+||+.||.|..|.|+.. +.+ +. .+-||||+|...+.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 3457899999999999888999999999999999999876 222 22 24589999998776
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=0.00044 Score=69.15 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=64.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~ 108 (291)
...|||.|+|+..|.+.|+.+|..+|.++++.++..+ .|+++|.|||.|.++.+ .++...+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5689999999999999999999999999999988887 79999999999999876 5666666677778877766
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 43
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.48 E-value=0.0088 Score=55.57 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=61.2
Q ss_pred CCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC
Q 022814 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 24 ~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~ 97 (291)
+......-+||+.+|.+.|||++++|++|+++|..-|-....... -++.+-+|++.+.+.+. .|+.+.++
T Consensus 403 gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 403 GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred ccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCC
Confidence 333444467899999999999999999999999988765444322 23345699999999887 67777777
Q ss_pred C-eEEEEeccCC
Q 022814 98 G-RTIRVDHVAK 108 (291)
Q Consensus 98 g-r~i~V~~a~~ 108 (291)
. ..|.|.|+..
T Consensus 479 en~hlRvSFSks 490 (492)
T KOG1190|consen 479 ENHHLRVSFSKS 490 (492)
T ss_pred CCceEEEEeecc
Confidence 5 4889988753
No 108
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.40 E-value=0.0089 Score=43.64 Aligned_cols=63 Identities=22% Similarity=0.535 Sum_probs=40.7
Q ss_pred CEEEEcCCCCCCCHHHHH----HHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 36 AYVYVGGIPFDLTEGDLL----AVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~----~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..|||.|||.......|. .++..|| .|..|. .+-|+|-|.+++. -|+|-.+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988876655 5556775 566551 3689999999987 799999999999999
Q ss_pred ccCC
Q 022814 105 HVAK 108 (291)
Q Consensus 105 ~a~~ 108 (291)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.29 E-value=0.012 Score=58.07 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
+++|-|.|+|+.++-++|.++|..|-.+-.-.+++-...|.+.|-|.|.|++++. .|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4488899999999999999999999766433333434479999999999999887 7899999999988864
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.26 E-value=0.017 Score=46.71 Aligned_cols=73 Identities=30% Similarity=0.394 Sum_probs=48.6
Q ss_pred CCCCCCEEEEcCCCC------CCCH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCcee
Q 022814 31 KYKDSAYVYVGGIPF------DLTE---GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQI 96 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~------~~te---~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i 96 (291)
..||..||.|.-+.+ ...+ .+|...|..||+|.-|+++-+ .-+|+|.+-.+ .|+|..|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEE
Confidence 457888888866651 2322 267788999999988888754 57999999876 8999999
Q ss_pred CCeEEEEeccCCccc
Q 022814 97 LGRTIRVDHVAKYKK 111 (291)
Q Consensus 97 ~gr~i~V~~a~~~~~ 111 (291)
+|+.|+|..-.+...
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999998766544
No 111
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.19 E-value=0.0026 Score=61.50 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee---CCeEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI---LGRTI 101 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i---~gr~i 101 (291)
..+++.|||.||-.-+|.-+|++++. .+|.|...+| |+ .+..|||.|.+.+. +|+|+.+ +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45678999999999999999999999 5777777733 22 36689999999776 9999887 46788
Q ss_pred EEeccC
Q 022814 102 RVDHVA 107 (291)
Q Consensus 102 ~V~~a~ 107 (291)
.|.|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888875
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.11 E-value=0.018 Score=52.94 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=63.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 32 YKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..+.+.+.|-+|... +.-+.|-.+|..||.|..|++++.+ .|-|.|++.+..+ .||+..+-|..|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 467889999999886 6668999999999999999999876 7899999999887 899999999999998
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
++.
T Consensus 359 ~Sk 361 (494)
T KOG1456|consen 359 VSK 361 (494)
T ss_pred ecc
Confidence 874
No 113
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.06 E-value=0.0086 Score=60.55 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=63.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC--eEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG--RTIR 102 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g--r~i~ 102 (291)
+..+.+.|||++|.+++....|..+|..||.|..|.+-. | .-||||.|++... .|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 556788999999999999999999999999998876532 2 3499999998776 788888886 7799
Q ss_pred EeccCCccccc
Q 022814 103 VDHVAKYKKKE 113 (291)
Q Consensus 103 V~~a~~~~~~~ 113 (291)
|.++......+
T Consensus 525 vdla~~~~~~P 535 (975)
T KOG0112|consen 525 VDLASPPGATP 535 (975)
T ss_pred cccccCCCCCh
Confidence 99997665443
No 114
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.99 E-value=0.02 Score=38.19 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=36.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
+.|-|.+.++... +.|...|..||+|..+.+.. ..-+.||.|.+..+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ 48 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKD 48 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHH
Confidence 5678888887776 44556899999999998872 24589999998765
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.96 E-value=0.00053 Score=68.61 Aligned_cols=64 Identities=23% Similarity=0.396 Sum_probs=53.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILG 98 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~g 98 (291)
.+++||.||++.+.+.+|...|..+|.|..+.|.....+++.+|+|||+|..++. +++-..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3689999999999999999999999999888877666689999999999999876 444444444
No 116
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.95 E-value=0.0068 Score=53.06 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=60.9
Q ss_pred hhchhhhccCCCCCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 12 HINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
++.++++........++.-.+.....|||-||+..++-+.|...|+.||+|....++.|. .+++.+-++|+|...-.
T Consensus 8 e~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~ 84 (275)
T KOG0115|consen 8 EIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPN 84 (275)
T ss_pred HHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchh
Confidence 333445555555555555566666899999999999999999999999999887777765 68999999999998655
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.76 E-value=0.013 Score=54.16 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=56.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCC-eeE--EEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVD--VNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~--i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
....|-+.+||+.++.++|..+|..|.. |.. |+|+.+. .|.+.|-|||+|.+.+. .-+.+....+.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3567889999999999999999999864 444 7787775 79999999999999887 223334457777775
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
.+
T Consensus 358 p~ 359 (508)
T KOG1365|consen 358 PC 359 (508)
T ss_pred ec
Confidence 44
No 118
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.67 E-value=0.037 Score=40.36 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=36.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.-.+.+||. +|..+...+|..+|+.||.|. |.++-|. -|||.....+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~ 54 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQ 54 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHH
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHH
Confidence 345677786 999999999999999999975 6777765 79999998876
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.66 E-value=0.0074 Score=56.29 Aligned_cols=70 Identities=30% Similarity=0.490 Sum_probs=52.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEEcChhh------hcCC-ceeCCeEEEEeccC
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEI-VDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNG-AQILGRTIRVDHVA 107 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I-~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng-~~i~gr~i~V~~a~ 107 (291)
++||||||.+.++..+|..+|...-.- ..-.|+ ..|||||.+.+... .++| +++.|..+.|.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 579999999999999999999764111 111122 25899999998776 6677 57889999999887
Q ss_pred Ccccc
Q 022814 108 KYKKK 112 (291)
Q Consensus 108 ~~~~~ 112 (291)
+.++.
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 66544
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.58 E-value=0.014 Score=57.67 Aligned_cols=77 Identities=26% Similarity=0.237 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~-i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
...+|||-.||..|++.++.++|...-.|++ |.|..-+ +++-.+.|||+|..+++ .-.-+.++.+.|.|+-+
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4579999999999999999999998766666 7777666 78899999999999666 22335677888999876
Q ss_pred CCccc
Q 022814 107 AKYKK 111 (291)
Q Consensus 107 ~~~~~ 111 (291)
.....
T Consensus 512 ~~~~m 516 (944)
T KOG4307|consen 512 ADYAM 516 (944)
T ss_pred hhHHH
Confidence 54433
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.48 E-value=0.0049 Score=62.26 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=58.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.-.+.|||+|||+..+++.+|.-+|..+|.|..|.|-+.. -++-.-||||.|.+... .|.+..|..-.+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3456899999999999999999999999999999887654 35556699999988766 6777777655555554
Q ss_pred c
Q 022814 106 V 106 (291)
Q Consensus 106 a 106 (291)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 122
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.30 E-value=0.04 Score=50.75 Aligned_cols=73 Identities=25% Similarity=0.286 Sum_probs=58.2
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh--------hcCCceeCCeE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--------NLNGAQILGRT 100 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~--------~lng~~i~gr~ 100 (291)
..+.+++-.|.|.+|-..++|.+|.+.++.||.|..+.++.. +-.|.|+|++.+. +-|...|.|..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCch
Confidence 345677889999999999999999999999999998876644 3479999997765 44556677777
Q ss_pred EEEeccC
Q 022814 101 IRVDHVA 107 (291)
Q Consensus 101 i~V~~a~ 107 (291)
-.++++.
T Consensus 99 Al~NySt 105 (494)
T KOG1456|consen 99 ALFNYST 105 (494)
T ss_pred hhcccch
Confidence 7777663
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.08 E-value=0.01 Score=53.79 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCc-eeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGA-QILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~-~i~gr~i~V~~a~ 107 (291)
..+++||++|.+.+.+.++..+|..+|.+..+.+........++||++|.|...+. +|.+. .+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999999888888777789999999999999887 55653 5556665555544
Q ss_pred Ccc
Q 022814 108 KYK 110 (291)
Q Consensus 108 ~~~ 110 (291)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 433
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.97 E-value=0.058 Score=52.16 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=43.9
Q ss_pred HHHhcCCCeeEEEEeecCCC---CCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 54 AVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 54 ~~F~~~G~I~~i~i~~d~~t---g~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
.-+++||.|..|.|+++..+ .-..|.-||+|.+.++ +|+|..+.++.|...+..
T Consensus 428 ~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 428 TECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 44668999999999987323 3456788999999887 999999999999887764
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.95 E-value=0.014 Score=51.17 Aligned_cols=85 Identities=26% Similarity=0.555 Sum_probs=63.4
Q ss_pred HHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCccccchhHHHHHHhh
Q 022814 51 DLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKYKKKEEEDEETRQRM 123 (291)
Q Consensus 51 ~L~~~F~-~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~~~~~~~~~~~~~~~ 123 (291)
+|...|+ +||+|..+.|..+- .-.-.|-+||.|...++ .||+--|.|++|...++.-.--
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~------------ 150 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF------------ 150 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch------------
Confidence 3444445 89999998766543 44568899999998877 8999999999999988753221
Q ss_pred hhhhccccccccCCCCCCCceeEeecC
Q 022814 124 REERGVCRAFQRGECTRGDGCKFSHNE 150 (291)
Q Consensus 124 ~~~~~~~~~f~~~~~g~~~~~~~~~d~ 150 (291)
....|..|-.+.|..+..|.|++-.
T Consensus 151 --rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 151 --REAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred --hhhhhcccccccCCCCCcCcchhhh
Confidence 2245788888888888888887754
No 126
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.92 E-value=0.012 Score=57.68 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC
Q 022814 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 24 ~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~ 97 (291)
...+..+..++.-++||+||...+..+-+..++..||-|.+|..+. |||.+|..+.. .+.-..|+
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 3445555678889999999999999999999999999998886553 99999998876 56666777
Q ss_pred CeEEEEec
Q 022814 98 GRTIRVDH 105 (291)
Q Consensus 98 gr~i~V~~ 105 (291)
|..+.+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 77766654
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.58 E-value=0.31 Score=44.69 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCCCEEEEcCCCC----CCC-------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCc
Q 022814 32 YKDSAYVYVGGIPF----DLT-------EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGA 94 (291)
Q Consensus 32 ~~~~~~lfVgnL~~----~~t-------e~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~ 94 (291)
....+||.|.||=. ..+ +++|.+-.++||.|..|.|.- ..+.|.+-|.|.+.+. .|+|-
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 45567888888832 333 345556678999999987752 3568999999999886 89999
Q ss_pred eeCCeEEEEeccCC
Q 022814 95 QILGRTIRVDHVAK 108 (291)
Q Consensus 95 ~i~gr~i~V~~a~~ 108 (291)
.++|+.|.......
T Consensus 338 ~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 338 WFDGRQLTASIWDG 351 (382)
T ss_pred eecceEEEEEEeCC
Confidence 99999998876543
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.97 E-value=0.13 Score=43.15 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=44.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
....|.|.+||++.++.+|++.+-+.|.|....|.+| |++.|+|...++
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eD 162 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKED 162 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhh
Confidence 3458899999999999999999999999999998887 389999998887
No 129
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.81 E-value=0.054 Score=51.37 Aligned_cols=69 Identities=26% Similarity=0.340 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCCCCCH-HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTE-GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te-~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
+.+.|-+-..|+.+.. ++|...|.+||+|..|.|-.. .-.|.|+|.+... +..+..|+++.|+|-|..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 4456666666776544 899999999999999987544 4479999998765 788899999999999987
Q ss_pred C
Q 022814 108 K 108 (291)
Q Consensus 108 ~ 108 (291)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 7
No 130
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.66 E-value=0.29 Score=37.20 Aligned_cols=71 Identities=20% Similarity=0.360 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE-EeecC------CCCCcceEEEEEEcChhh-----hcCCceeCCeE-E
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVN-LVRDK------GTGKPRGFAFVAYEDQRN-----NLNGAQILGRT-I 101 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~-i~~d~------~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~-i 101 (291)
.+.|.|=+.|+. ....|...|++||+|.... +..+. .......+-.|+|.++.+ .-||..|.|.. |
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 455777788887 4578889999999998774 11110 011234588999999887 67999998854 4
Q ss_pred EEecc
Q 022814 102 RVDHV 106 (291)
Q Consensus 102 ~V~~a 106 (291)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 46554
No 131
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.51 E-value=0.083 Score=44.42 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc-CCCe---eEEEEeecCCC--CCcceEEEEEEcChhh------hcCCceeCC--
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQ-CGEI---VDVNLVRDKGT--GKPRGFAFVAYEDQRN------NLNGAQILG-- 98 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I---~~i~i~~d~~t--g~s~G~aFV~F~~~~~------~lng~~i~g-- 98 (291)
....+|.|.+||+.+|++++.+.+.. ++.. ..+.-.....+ -....-|||.|.+.++ .++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999987776 6655 34432222211 1234568999999887 788876643
Q ss_pred ---eEEEEeccCC
Q 022814 99 ---RTIRVDHVAK 108 (291)
Q Consensus 99 ---r~i~V~~a~~ 108 (291)
....|.+|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3445666643
No 132
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.58 E-value=0.28 Score=43.96 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcc-eEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 50 GDLLAVFAQCGEIVDVNLVRDKGTGKPR-GFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 50 ~~L~~~F~~~G~I~~i~i~~d~~tg~s~-G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
+++++..++||.|..|.|...+..-... ---||+|+..++ .|||..|+|+.+...|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4666778899999999887665222222 246999999887 899999999999887754
No 133
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.53 E-value=0.43 Score=44.36 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=47.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc---C-CCeeEEEEeecCCCCCcceEEEEEEcChhh---h--cCCceeCCeEEEE
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQ---C-GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---N--LNGAQILGRTIRV 103 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~---~-G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~--lng~~i~gr~i~V 103 (291)
.|-+.+||+++|+.++.++|.+ . |....|.++..+ .|+..|-|||.|..++. + -+-..|+-+.|.|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456799999999999999963 2 345566666655 79999999999999887 2 2334455555544
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.32 E-value=0.05 Score=49.51 Aligned_cols=73 Identities=25% Similarity=0.491 Sum_probs=52.2
Q ss_pred CCEEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEEeecCC--CCC-cceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 35 SAYVYVGGIPFDLTEGDLL---AVFAQCGEIVDVNLVRDKG--TGK-PRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~---~~F~~~G~I~~i~i~~d~~--tg~-s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
.+-+||-+|++....+.+. ++|.+||.|..|.+..+.. .+. ...-++|+|...++ ..+|+.++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3678899999876555443 6899999999998887662 111 11237999998665 6788888888866
Q ss_pred EeccC
Q 022814 103 VDHVA 107 (291)
Q Consensus 103 V~~a~ 107 (291)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 65543
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.72 E-value=0.75 Score=32.70 Aligned_cols=61 Identities=23% Similarity=0.519 Sum_probs=34.6
Q ss_pred EEEEcCCCC--CCCHHHHHHHHhcCC-----CeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 37 YVYVGGIPF--DLTEGDLLAVFAQCG-----EIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 37 ~lfVgnL~~--~~te~~L~~~F~~~G-----~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
+||| |+-. .++..+|..++...+ .|-.|.|... |+||+-....+ +|++..+.|++|.|.
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEEVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT-HHHHHHHHTT--SSS----EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 4565 3332 578889999998764 4556766543 89999988765 899999999999997
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.59 E-value=0.18 Score=48.72 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC----CeEEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQ-CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL----GRTIR 102 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~----gr~i~ 102 (291)
+-+++-|.|+|-..|-..|.+.-++ .|.-..+.|+.|..+..+.|||||.|.++++ +.||+.++ .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 3456666677766666665555433 6888889999999999999999999999998 88887654 23445
Q ss_pred EeccC
Q 022814 103 VDHVA 107 (291)
Q Consensus 103 V~~a~ 107 (291)
|.+|.
T Consensus 467 itYAr 471 (549)
T KOG4660|consen 467 ITYAR 471 (549)
T ss_pred eehhh
Confidence 55553
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.32 E-value=0.99 Score=36.42 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCCCCCEEEEcCCCCCCCH-HHHHHH---HhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh---hcCCc--eeCCeEE
Q 022814 31 KYKDSAYVYVGGIPFDLTE-GDLLAV---FAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NLNGA--QILGRTI 101 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te-~~L~~~---F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~lng~--~i~gr~i 101 (291)
+.+|..||.|.=|..++.. ++|+.+ ++.||+|.+|.+.- +.-|.|.|.+..+ +++.+ ..-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 4688999999988777554 566654 57899999997753 4479999999877 33322 3456666
Q ss_pred EEeccCC
Q 022814 102 RVDHVAK 108 (291)
Q Consensus 102 ~V~~a~~ 108 (291)
.+.|-+.
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 6665543
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.65 E-value=2.8 Score=32.35 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC---eEEEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQC-GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG---RTIRV 103 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g---r~i~V 103 (291)
....+.+...|+.++-+.|..+.+.+ ..|..+.|++|. ..++=.+.|.|.++.+ .+||..+.. -.++|
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chv 89 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHV 89 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEE
Confidence 34455555555556666776555555 467888999874 3366688999999887 889987753 33444
Q ss_pred ecc
Q 022814 104 DHV 106 (291)
Q Consensus 104 ~~a 106 (291)
-+.
T Consensus 90 vfV 92 (110)
T PF07576_consen 90 VFV 92 (110)
T ss_pred EEE
Confidence 443
No 139
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.82 E-value=3.3 Score=28.53 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQC---GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~---G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
+.+|+|.++. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~ 54 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEET 54 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHH
Confidence 4679999997 68889999999998 235678888886 68888888765
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=81.32 E-value=0.48 Score=41.73 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=49.2
Q ss_pred CEEEEcCCCCCCCHHH-H--HHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 36 AYVYVGGIPFDLTEGD-L--LAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~-L--~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
-.+|++++-..+..+- | ...|+.+-.+....++.+. -+...+++|+.|....+ .-+++.|+-.+|++.-.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3556667666555544 3 6778877777777777765 57789999999987665 55666777666665544
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
+..
T Consensus 176 tsw 178 (290)
T KOG0226|consen 176 TSW 178 (290)
T ss_pred ccc
Confidence 433
No 141
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.60 E-value=5.4 Score=28.03 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=45.5
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh---hcCCceeCCeEEEEecc
Q 022814 50 GDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 50 ~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~lng~~i~gr~i~V~~a 106 (291)
.+|++.|...| ++..|..+....+..+.-+-||+...... .|+=+.|++..|.|.-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEeehhhCCeeEEEecC
Confidence 46888888888 68888888887778888899999887654 66777889999888654
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.13 E-value=5.7 Score=37.90 Aligned_cols=62 Identities=29% Similarity=0.501 Sum_probs=50.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEeecCCCCCcce-EEEEEEcChhh------hcCCceeCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQC-GEIVDVNLVRDKGTGKPRG-FAFVAYEDQRN------NLNGAQILG 98 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~-G~I~~i~i~~d~~tg~s~G-~aFV~F~~~~~------~lng~~i~g 98 (291)
+++.|+|--+|..+|--||..|...| -.|..|.|++|. .+-. ...|.|.++.+ .+||..+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~---~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG---MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC---CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 38899999999999999999998876 568999999963 3333 57899999887 889987754
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=8.1 Score=38.05 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=31.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEEee
Q 022814 32 YKDSAYVYVGGIPFD-LTEGDLLAVFAQC----GEIVDVNLVR 69 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~-~te~~L~~~F~~~----G~I~~i~i~~ 69 (291)
..+.+.|-|+||.|. +...+|..+|+.| |.|.+|.|..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp 213 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP 213 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech
Confidence 456789999999996 7789999999876 5899988743
No 144
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=78.38 E-value=5.3 Score=39.13 Aligned_cols=50 Identities=14% Similarity=0.343 Sum_probs=41.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQ--CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~--~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
..-|.|+|.-||..+-.|+|+.||.. |-.+.+|.+..+. -=||+|++..+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~D 224 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTD 224 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchh
Confidence 34567888999999999999999974 7888999887654 36899998776
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.06 E-value=1.7 Score=44.34 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=59.0
Q ss_pred ccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee--CC
Q 022814 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI--LG 98 (291)
Q Consensus 27 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i--~g 98 (291)
++...+|-..+.++-|++-.++..-|..+|++||.|.+++..++ ...|.|+|...+. ++.|..+ -|
T Consensus 290 sisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g 363 (1007)
T KOG4574|consen 290 SISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTG 363 (1007)
T ss_pred eecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccC
Confidence 34445566667777788888999999999999999999999887 3589999999887 7777654 36
Q ss_pred eEEEEeccCC
Q 022814 99 RTIRVDHVAK 108 (291)
Q Consensus 99 r~i~V~~a~~ 108 (291)
-+..|-+|..
T Consensus 364 ~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 364 APSRVSFAKT 373 (1007)
T ss_pred CceeEEeccc
Confidence 6677777643
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=76.65 E-value=0.6 Score=40.29 Aligned_cols=54 Identities=31% Similarity=0.495 Sum_probs=46.6
Q ss_pred CCEEEEcC----CCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 35 SAYVYVGG----IPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 35 ~~~lfVgn----L~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
..+++.|+ |...++++.+..+|+..|+|..+.+.++. .|.++-++||++.-..+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCA 137 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhc
Confidence 35677777 88889999999999999999999999887 48899999999877665
No 147
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.72 E-value=13 Score=26.00 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=45.2
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh---hcCCceeCCeEEEEeccC
Q 022814 50 GDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 50 ~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~lng~~i~gr~i~V~~a~ 107 (291)
++|.+.|...| +|..|.-+....+..+.-.-||++....+ .++=..|++..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCCeEEEEecCC
Confidence 46777787777 67888878777788888999999987654 666677889988887553
No 148
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.91 E-value=4.3 Score=31.64 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=27.1
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 37 YVYVGGIPFD---------LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 37 ~lfVgnL~~~---------~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
++.|-|++.. ++.+.|.+.|..|..+. +..+.++ .-+.|++.|+|...-+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 3445577543 34578999999998875 4455554 3568999999987554
No 149
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=70.87 E-value=14 Score=31.30 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcC--CceeCCeEEEEeccCCcc
Q 022814 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLN--GAQILGRTIRVDHVAKYK 110 (291)
Q Consensus 49 e~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~ln--g~~i~gr~i~V~~a~~~~ 110 (291)
...|+.+|..|+.+..+.+... .+=..|.|.+.++ .|+ +..|.|..|+|.|++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4789999999999887766644 3467889998876 777 899999999999985443
No 150
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=69.12 E-value=9.4 Score=28.12 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~ 86 (291)
..-||||+++..+-|.-...+....+.-. +.|+... ....||+|-++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~--~neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSD--NNEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEcc--CCCCCEEEEEeCC
Confidence 34599999999887766666555554433 3333322 2278999998854
No 151
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=65.10 E-value=11 Score=32.15 Aligned_cols=59 Identities=29% Similarity=0.517 Sum_probs=44.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.......+++.+++..++...+..+|..+|.|..+.+...........+.++.+.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKD 279 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHh
Confidence 44667899999999999999999999999999777777665444455555554444433
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.88 E-value=13 Score=35.03 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=49.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEEcChhhhcCCceeCCeEEEEe
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQILGRTIRVD 104 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~i~i~~d~~tg~s~G~aFV~F~~~~~~lng~~i~gr~i~V~ 104 (291)
-.++|=|-++|.....++|..+|+.|+. --.|.++-|. .||..|.....+.+...|..-.|+|.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiR 454 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIR 454 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEee
Confidence 3578999999999999999999999975 3677888776 89999998777555555555555554
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.71 E-value=9.5 Score=34.23 Aligned_cols=50 Identities=30% Similarity=0.495 Sum_probs=34.7
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHHHhcCCCeeEEEEee-cC----CCCCcceEEEEEE
Q 022814 35 SAYVYVGGIPFD------------LTEGDLLAVFAQCGEIVDVNLVR-DK----GTGKPRGFAFVAY 84 (291)
Q Consensus 35 ~~~lfVgnL~~~------------~te~~L~~~F~~~G~I~~i~i~~-d~----~tg~s~G~aFV~F 84 (291)
+.|||+.+||-. .+++-|...|+.||+|..|.|+. |+ .+|+..|.-|-.|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 467888887742 46788999999999998888764 22 4566555444333
No 154
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.78 E-value=31 Score=31.39 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeE
Q 022814 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRT 100 (291)
Q Consensus 38 lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~ 100 (291)
|-|-++|+.. -..|..+|++||+|+..... ..-.+-+|-|..... .-||.+|++..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccce
Confidence 4444666654 36788899999999876544 224588999987655 56788888754
No 155
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=60.82 E-value=17 Score=27.34 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=30.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcCh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~ 87 (291)
..-||||+++..+-+.--..+-+.++.- .+.|+.. +....||+|-++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc--CCCCCCcEEEecCCC
Confidence 3459999998887765444444445432 2333332 223349999999876
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.77 E-value=16 Score=33.00 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=37.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEI-VDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I-~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.+-|||+||+.++.-.+|+..+-+.|.+ .+|.+.- +.|-||+.|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccC
Confidence 3569999999999999999999887654 4454432 36789999987644
No 157
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=60.73 E-value=9.7 Score=33.34 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVN 66 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~ 66 (291)
.+...+||+-|||..+|++.|..+.+++|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 35577899999999999999999999998655443
No 158
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=51.80 E-value=1e+02 Score=31.23 Aligned_cols=63 Identities=10% Similarity=0.235 Sum_probs=44.7
Q ss_pred CEEEEcCCC--CCCCHHHHHHHHhcCCCee-----EEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 36 AYVYVGGIP--FDLTEGDLLAVFAQCGEIV-----DVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 36 ~~lfVgnL~--~~~te~~L~~~F~~~G~I~-----~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
.++|| ++- ..++..+|..++..-+.|. .|.|.- .|.||+.....+ +|++..|.|+.|.|
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPKGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcChhhHHHHHHHhccccccCCceEE
Confidence 44555 443 3578888888887665443 444432 389999987665 89999999999999
Q ss_pred eccC
Q 022814 104 DHVA 107 (291)
Q Consensus 104 ~~a~ 107 (291)
..+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 8764
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=47.86 E-value=47 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCeeEEEEe
Q 022814 50 GDLLAVFAQCGEIVDVNLV 68 (291)
Q Consensus 50 ~~L~~~F~~~G~I~~i~i~ 68 (291)
.+|+.+|+..|+|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999766653
No 160
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=46.86 E-value=16 Score=27.01 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=28.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEEcCh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQ-CGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~i~i~~d~~tg~s~G~aFV~F~~~ 87 (291)
..-||||+++..+-+.--..+-+. .+. -.+.|+.. +....||+|-++-+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~--~~~e~G~~~~t~G~~ 75 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS--SNTCPGFEFFTLGEN 75 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe--CCCCCCcEEEecCCC
Confidence 345999999987766433333333 232 12223322 234568999988774
No 161
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.76 E-value=37 Score=30.77 Aligned_cols=55 Identities=11% Similarity=0.234 Sum_probs=41.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC-------CCCcceEEEEEEcChhh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG-------TGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~-------tg~s~G~aFV~F~~~~~ 89 (291)
.+.|.+.||..+++=-.+...|.+||+|++|.|+.+.. .-+......+.|-+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~ 76 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREI 76 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHH
Confidence 45677889998898888888899999999999997651 12334567777777665
No 162
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=39.80 E-value=38 Score=25.43 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCCHHHHHH---HHhcCCCeeEEEE--eecCCCCCcceEEEEEEcC
Q 022814 37 YVYVGGIPFDLTEGDLLA---VFAQCGEIVDVNL--VRDKGTGKPRGFAFVAYED 86 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~---~F~~~G~I~~i~i--~~d~~tg~s~G~aFV~F~~ 86 (291)
..|+.+||.++.+.++.. +|..++.-..|.+ ......+.+.|++.+.+..
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ae 66 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVAE 66 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEEE
Confidence 468999999998876664 4555554344443 2234467888988776664
No 163
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.04 E-value=24 Score=21.50 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhcCCC
Q 022814 45 FDLTEGDLLAVFAQCGE 61 (291)
Q Consensus 45 ~~~te~~L~~~F~~~G~ 61 (291)
..|++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 37899999999998754
No 164
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=38.67 E-value=1.3e+02 Score=20.83 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 46 DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 46 ~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
.++-++|+..+..|+- . .|..|+ .|| ||.|.+..+ ..+|..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4667899999999963 2 344554 333 788988765 77888877766654
No 165
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.73 E-value=8.6 Score=36.66 Aligned_cols=54 Identities=4% Similarity=-0.231 Sum_probs=43.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
...|+..||..+++++|.-+|..||.|..+.+...-..|...-.+||+-.....
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~~ 57 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKANG 57 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccCc
Confidence 456788899999999999999999999888776655456667788988776554
No 166
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.54 E-value=35 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=27.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD 70 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d 70 (291)
.....|+|||+++|..-|..++...-.+....++..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 456789999999999999999987656555555443
No 167
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=35.72 E-value=39 Score=22.55 Aligned_cols=30 Identities=40% Similarity=0.628 Sum_probs=15.6
Q ss_pred CcceEEEEEEcCh-hh------hcCCceeCCeEEEEec
Q 022814 75 KPRGFAFVAYEDQ-RN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 75 ~s~G~aFV~F~~~-~~------~lng~~i~gr~i~V~~ 105 (291)
.++|||||...+. .+ .|++.+-++. +.|..
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~-V~v~i 42 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGAMDGDK-VLVRI 42 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS-TT-E-EEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCCCCCCE-EEEEE
Confidence 3589999999982 22 5665544443 44433
No 168
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=34.16 E-value=56 Score=29.78 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=15.9
Q ss_pred CCCCCceeEeecCCCCCCCCCC
Q 022814 138 CTRGDGCKFSHNEQRAANTGGG 159 (291)
Q Consensus 138 ~g~~~~~~~~~d~~~~~~~g~g 159 (291)
+|.|..+.|+++..||..+||+
T Consensus 125 YG~IkrirlV~d~vTgkskGYA 146 (335)
T KOG0113|consen 125 YGPIKRIRLVRDKVTGKSKGYA 146 (335)
T ss_pred cCcceeEEEeeecccCCccceE
Confidence 4567777888888888766654
No 169
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.26 E-value=2.1e+02 Score=23.38 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=39.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc---CCCeeEEEEeecCCC---------CCcce-EEEEEEcCh
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQ---CGEIVDVNLVRDKGT---------GKPRG-FAFVAYEDQ 87 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~---~G~I~~i~i~~d~~t---------g~s~G-~aFV~F~~~ 87 (291)
++..+||+-.++.-+++++..++.++ .++|..|.+-+...+ ...+. |-+|.|++-
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG 152 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETG 152 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccc
Confidence 44579999999999999999999876 467788877655421 11223 777888764
No 170
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.31 E-value=52 Score=29.55 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=21.6
Q ss_pred CCCeeEEEEeecC------CCCCcceEEEEEEcChhh
Q 022814 59 CGEIVDVNLVRDK------GTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 59 ~G~I~~i~i~~d~------~tg~s~G~aFV~F~~~~~ 89 (291)
-|.-+.|.|+.+. .|-...|||||.-..+.+
T Consensus 124 kGq~kEv~v~KsedalGlTITDNG~GyAFIKrIkegs 160 (334)
T KOG3938|consen 124 KGQAKEVEVVKSEDALGLTITDNGAGYAFIKRIKEGS 160 (334)
T ss_pred cCcceeEEEEecccccceEEeeCCcceeeeEeecCCc
Confidence 3677788887654 234568999998766554
No 171
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.65 E-value=42 Score=29.73 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=27.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHh--cCCCeeEEEEe
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFA--QCGEIVDVNLV 68 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~--~~G~I~~i~i~ 68 (291)
.....++|||||+.++..-|..++. .||.+.-+-|+
T Consensus 95 ~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEE
T ss_pred cCCceEEEEEecccchHHHHHHHhhcccccccceEEEE
Confidence 3467899999999999999988886 56655544443
No 172
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=26.05 E-value=58 Score=31.77 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=34.0
Q ss_pred CCCCCEEE---EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcc
Q 022814 32 YKDSAYVY---VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPR 77 (291)
Q Consensus 32 ~~~~~~lf---VgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~ 77 (291)
-.|.+.|| |||||..-.++-|.++..+| .-+|+.|..||.-+
T Consensus 272 RAPeRRvFyIDvGnlpk~KAeqyl~~iM~k~----knklvYDa~TGevr 316 (501)
T PF07230_consen 272 RAPERRVFYIDVGNLPKQKAEQYLRDIMNKY----KNKLVYDASTGEVR 316 (501)
T ss_pred cCccceEEEEECCCCChHhHHHHHHHHHHHh----cceeeecCCCCeec
Confidence 45777777 89999999999999999988 34678888888643
No 173
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=25.94 E-value=8.1 Score=37.87 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG 98 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g 98 (291)
...|+|||.|++++++-++|..+.+.+--+..+.+-.+.......-+++|+|.-... +||++.+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456899999999999999999999887555555554443334456678888875332 777776643
No 174
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=24.44 E-value=87 Score=21.61 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 59 CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 59 ~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.|.|..+.+ . .+|+||++..+...
T Consensus 5 ~g~v~~i~~--t-----k~g~~~~~L~D~~~ 28 (78)
T cd04489 5 EGEISNLKR--P-----SSGHLYFTLKDEDA 28 (78)
T ss_pred EEEEecCEE--C-----CCcEEEEEEEeCCe
Confidence 356666655 1 24599999988765
No 175
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=23.87 E-value=2.2e+02 Score=27.85 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=42.2
Q ss_pred EEEEcCCC--CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhhhcCCceeCCeEEEEecc
Q 022814 37 YVYVGGIP--FDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRNNLNGAQILGRTIRVDHV 106 (291)
Q Consensus 37 ~lfVgnL~--~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~~lng~~i~gr~i~V~~a 106 (291)
.++-+.|. ..+++..|..+|.+-+.-..+.++.- +..+.||-||.|.. ..||+.|.|..|.|.+.
T Consensus 39 ~~~~g~~s~~~a~~~Kei~~~l~~~n~~~nlk~~~~--~td~~G~t~vr~~q---~vnGvpv~g~~v~vh~d 105 (507)
T COG3227 39 IFIKGTLSKKSAPNEKEILQFLENVNADNNLKAIST--DTDPNGFTHVRYQQ---VVNGVPVKGSEVIVHLD 105 (507)
T ss_pred hhccccccccccCChHHHHHHHhcCChhhceeeEEe--eccCCCceEEEEEe---eECCeeccCceEEEEEC
Confidence 33344443 36778888888885443344444432 24458999999987 47888888877777655
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=23.50 E-value=80 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~ 69 (291)
.++|+|||+.++..-|..++...-.+..+.++.
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~ 139 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVMV 139 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEEe
Confidence 678999999999888888876422244444443
No 177
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=23.37 E-value=1.2e+02 Score=25.46 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=45.1
Q ss_pred hhchhhhccCCCCCcccccCCCCCCEEEEcCCCCCCCHHHH---HHHHhcCCCee------EEEEeecCCCC--------
Q 022814 12 HINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDL---LAVFAQCGEIV------DVNLVRDKGTG-------- 74 (291)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L---~~~F~~~G~I~------~i~i~~d~~tg-------- 74 (291)
.++-...+.+|.+.-..-+-+.-++||||..|=+....-.| -..|.+.|.+. ...|+.-+.||
T Consensus 65 qlNlGGipAAmAGaYLrVqGPKG~TTVYVTDlYPegasGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKe 144 (232)
T COG4305 65 QLNLGGIPAAMAGAYLRVQGPKGKTTVYVTDLYPEGASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKE 144 (232)
T ss_pred HcccCCchhhhccceEEEECCCCceEEEEecccccccccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEec
Confidence 34444456666666666566677889999998776544333 36788877543 33455555553
Q ss_pred -CcceEEEEEEcC
Q 022814 75 -KPRGFAFVAYED 86 (291)
Q Consensus 75 -~s~G~aFV~F~~ 86 (291)
-+..+|-|...+
T Consensus 145 GSs~WWAAIQVRn 157 (232)
T COG4305 145 GSSRWWAAIQVRN 157 (232)
T ss_pred CCccceeeeeeec
Confidence 455556555443
No 178
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=22.81 E-value=48 Score=24.51 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHH
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVF 56 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F 56 (291)
.....+|.|.|||..+.+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3567899999999999999999754
No 179
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=22.76 E-value=1.3e+02 Score=28.09 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEEcChhh
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK-PRGFAFVAYEDQRN 89 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~-s~G~aFV~F~~~~~ 89 (291)
++..+.-||.|+--+.++-..|+.+|.+++.-..-.+..|-.||- +.|++.+.+..+.+
T Consensus 175 QY~~P~GlfYGG~~p~wS~~~L~~il~~~~~~~~~v~~iDlHTGlGp~G~~~~i~~~~~~ 234 (341)
T PF10994_consen 175 QYTHPDGLFYGGTEPEWSNRTLREILREHLAGAERVAWIDLHTGLGPYGHGELICDGPPD 234 (341)
T ss_pred CcCCCCccccCCCCccHHHHHHHHHHHHHhhcCcEEEEEEeCCCCCCCCceEEEecCCCC
Confidence 456667799999999999999999999886443334455666876 67888777766443
No 180
>PHA02531 20 portal vertex protein; Provisional
Probab=22.73 E-value=61 Score=31.61 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=32.0
Q ss_pred CCCCEEE---EcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcc
Q 022814 33 KDSAYVY---VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPR 77 (291)
Q Consensus 33 ~~~~~lf---VgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~ 77 (291)
.|.+.|| |||||..-.++-|.++..+|= -+|+.|..||.-+
T Consensus 276 APERRvFYiDVGNlPk~KAeqYlr~vm~~yk----NklvYDa~TGeir 319 (514)
T PHA02531 276 APERRVFYIDVGNLPKRKAEEYLNNVMQRYK----NRVVYDANTGKVK 319 (514)
T ss_pred CccceEEEEEcCCCChhhHHHHHHHHHHHhh----hhEEEeCCCCeec
Confidence 5666666 899999999999999999883 3567777777544
No 181
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=22.42 E-value=74 Score=29.91 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=40.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCC--CCcceEEEEEEcChhh------hcCCcee
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLVRDKGT--GKPRGFAFVAYEDQRN------NLNGAQI 96 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~i~i~~d~~t--g~s~G~aFV~F~~~~~------~lng~~i 96 (291)
.+.|.|-+||+..++.+|.+-..+|-. +....+...... ..-.+.|||.|..+++ -++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456889999999999999987777632 222233321111 1225678999999887 5566544
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.38 E-value=79 Score=28.74 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=24.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~ 69 (291)
.+.|+|||+.++..-|..++.....+..+.++.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~ 135 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMF 135 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeee
Confidence 477899999999998888886544455444443
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=20.80 E-value=1.1e+02 Score=26.83 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=21.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCC
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGE 61 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~ 61 (291)
.++|+|||+.++..-|..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4889999999999999999975554
Done!