Query 022814
Match_columns 291
No_of_seqs 324 out of 2497
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 8E-23 2.7E-27 193.8 16.7 79 32-110 99-183 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 8E-21 2.7E-25 144.1 10.6 77 32-108 16-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.8 7.4E-20 2.5E-24 141.4 10.7 79 32-110 3-87 (110)
4 2lxi_A RNA-binding protein 10; 99.8 4.3E-20 1.5E-24 137.8 6.4 78 35-112 1-86 (91)
5 2lkz_A RNA-binding protein 5; 99.8 9.8E-20 3.4E-24 137.1 7.5 77 32-108 6-94 (95)
6 2cqc_A Arginine/serine-rich sp 99.8 6.4E-19 2.2E-23 131.7 10.6 80 29-108 9-94 (95)
7 1x5u_A Splicing factor 3B subu 99.8 5.2E-19 1.8E-23 134.9 10.2 83 29-111 9-97 (105)
8 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.6E-23 135.4 11.8 84 28-111 8-97 (115)
9 1x4h_A RNA-binding protein 28; 99.8 8.1E-19 2.8E-23 135.1 10.8 84 28-111 8-103 (111)
10 3s7r_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 128.7 10.9 77 30-106 6-87 (87)
11 2cq0_A Eukaryotic translation 99.8 7.7E-19 2.6E-23 133.5 10.3 81 31-111 11-97 (103)
12 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.4E-19 2.5E-23 129.2 9.6 77 32-108 3-85 (87)
13 3md1_A Nuclear and cytoplasmic 99.8 1E-18 3.5E-23 127.4 10.2 76 35-110 1-82 (83)
14 2x1f_A MRNA 3'-END-processing 99.8 1.1E-18 3.9E-23 130.9 10.8 80 34-113 1-86 (96)
15 2cpz_A CUG triplet repeat RNA- 99.8 1E-18 3.5E-23 135.6 10.6 82 30-111 20-107 (115)
16 2dng_A Eukaryotic translation 99.8 1.6E-18 5.6E-23 131.8 11.5 81 30-111 10-95 (103)
17 2dgs_A DAZ-associated protein 99.8 1.1E-18 3.7E-23 131.8 9.9 82 31-112 6-92 (99)
18 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.4E-19 3.2E-23 128.1 9.3 75 32-106 4-84 (85)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.1E-19 2.4E-23 133.4 8.8 82 31-112 8-95 (102)
20 2cph_A RNA binding motif prote 99.8 1.1E-18 3.7E-23 133.5 9.9 84 28-111 8-99 (107)
21 2dnz_A Probable RNA-binding pr 99.8 1.1E-18 3.7E-23 130.6 9.6 79 32-110 2-86 (95)
22 2la6_A RNA-binding protein FUS 99.8 1.1E-18 3.7E-23 131.9 9.6 79 29-107 7-99 (99)
23 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-18 5.3E-23 129.5 10.4 77 30-106 11-93 (94)
24 1whw_A Hypothetical protein ri 99.8 1.4E-18 4.8E-23 131.0 10.2 80 32-111 5-90 (99)
25 1x5t_A Splicing factor 3B subu 99.8 8.8E-19 3E-23 131.3 9.0 79 33-111 3-88 (96)
26 2jrs_A RNA-binding protein 39; 99.8 1E-18 3.4E-23 134.5 9.5 86 24-109 15-106 (108)
27 2dnm_A SRP46 splicing factor; 99.8 8.4E-19 2.9E-23 133.3 8.7 82 30-111 8-95 (103)
28 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-18 6.3E-23 131.8 10.6 82 30-112 10-100 (105)
29 2do4_A Squamous cell carcinoma 99.8 2.6E-18 8.9E-23 129.9 11.2 80 31-111 13-98 (100)
30 1wi8_A EIF-4B, eukaryotic tran 99.8 1.8E-18 6.1E-23 131.8 10.2 80 31-111 11-96 (104)
31 1p27_B RNA-binding protein 8A; 99.8 1.1E-18 3.7E-23 133.3 8.8 80 30-109 18-103 (106)
32 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-18 4.6E-23 133.8 9.3 81 30-110 21-107 (110)
33 4f02_A Polyadenylate-binding p 99.8 1.6E-19 5.5E-24 155.0 4.5 132 32-176 12-154 (213)
34 3ex7_B RNA-binding protein 8A; 99.8 8.6E-19 2.9E-23 138.1 8.3 85 26-110 13-103 (126)
35 3p5t_L Cleavage and polyadenyl 99.8 3E-19 1E-23 132.7 5.2 77 36-112 2-86 (90)
36 2rs2_A Musashi-1, RNA-binding 99.8 2E-18 6.9E-23 133.0 9.8 83 29-111 19-106 (109)
37 2cpf_A RNA binding motif prote 99.8 1.8E-18 6.2E-23 130.2 9.2 79 33-111 3-90 (98)
38 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-18 3.9E-23 132.3 8.1 80 31-110 8-93 (102)
39 2cpe_A RNA-binding protein EWS 99.8 2.8E-18 9.5E-23 132.6 10.2 82 30-111 10-105 (113)
40 4f25_A Polyadenylate-binding p 99.8 2.2E-18 7.6E-23 134.0 9.5 76 34-111 4-85 (115)
41 2div_A TRNA selenocysteine ass 99.8 2.1E-18 7.2E-23 130.0 9.1 79 32-110 6-95 (99)
42 2dh8_A DAZ-associated protein 99.8 2.9E-18 9.8E-23 130.8 9.9 81 31-111 12-97 (105)
43 1s79_A Lupus LA protein; RRM, 99.8 1.2E-18 4E-23 133.1 7.7 76 32-108 8-88 (103)
44 3ns6_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 135.3 4.5 77 33-109 4-93 (100)
45 2khc_A Testis-specific RNP-typ 99.8 2.7E-18 9.1E-23 133.7 9.7 76 31-106 36-117 (118)
46 2cqd_A RNA-binding region cont 99.8 6.1E-18 2.1E-22 131.4 11.6 80 30-110 12-97 (116)
47 1l3k_A Heterogeneous nuclear r 99.8 9E-19 3.1E-23 147.3 7.4 135 31-176 9-157 (196)
48 3ulh_A THO complex subunit 4; 99.8 3.7E-18 1.3E-22 130.5 10.2 76 31-107 25-106 (107)
49 2d9p_A Polyadenylate-binding p 99.8 2.8E-18 9.6E-23 130.4 9.4 80 30-111 10-95 (103)
50 2dgp_A Bruno-like 4, RNA bindi 99.8 1.9E-18 6.7E-23 131.9 8.4 82 30-111 8-98 (106)
51 2cqg_A TDP-43, TAR DNA-binding 99.8 8.2E-18 2.8E-22 127.8 11.7 82 30-111 10-95 (103)
52 2cpy_A RNA-binding protein 12; 99.7 2.4E-18 8.1E-23 133.5 8.6 79 30-109 10-94 (114)
53 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.2E-18 1.8E-22 138.7 11.0 81 30-110 34-120 (156)
54 3ucg_A Polyadenylate-binding p 99.7 6.6E-18 2.3E-22 124.6 10.6 76 34-109 5-85 (89)
55 4a8x_A RNA-binding protein wit 99.7 2.8E-18 9.6E-23 126.3 8.5 78 33-110 2-86 (88)
56 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.3E-18 3.2E-22 127.5 11.4 80 30-111 10-95 (103)
57 3n9u_C Cleavage and polyadenyl 99.7 3.8E-18 1.3E-22 139.9 9.8 76 34-109 54-137 (156)
58 1x4b_A Heterogeneous nuclear r 99.7 2.6E-18 8.8E-23 133.5 8.2 78 33-110 25-107 (116)
59 2cqp_A RNA-binding protein 12; 99.7 2.7E-18 9.1E-23 129.2 8.0 79 31-109 11-95 (98)
60 2ywk_A Putative RNA-binding pr 99.7 6E-18 2E-22 126.5 9.8 76 31-107 12-93 (95)
61 2cq3_A RNA-binding protein 9; 99.7 1.3E-17 4.6E-22 126.6 11.8 82 29-112 9-96 (103)
62 2do0_A HnRNP M, heterogeneous 99.7 1.1E-17 3.8E-22 129.3 11.4 80 30-110 10-95 (114)
63 2fy1_A RNA-binding motif prote 99.7 5.1E-18 1.7E-22 132.2 9.4 78 32-110 4-87 (116)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.2E-18 1.8E-22 140.1 9.9 82 30-111 67-154 (165)
65 2kxn_B Transformer-2 protein h 99.7 3.6E-18 1.2E-22 135.6 8.5 81 30-110 41-127 (129)
66 2ek1_A RNA-binding protein 12; 99.7 2.1E-18 7.2E-23 129.0 6.6 77 32-108 12-94 (95)
67 2mss_A Protein (musashi1); RNA 99.7 2.2E-18 7.4E-23 123.3 6.3 70 37-106 1-75 (75)
68 2dhg_A TRNA selenocysteine ass 99.7 4.3E-18 1.5E-22 129.5 8.3 78 32-110 6-91 (104)
69 1u6f_A Tcubp1, RNA-binding pro 99.7 9.6E-18 3.3E-22 134.3 10.7 80 31-110 38-123 (139)
70 3d2w_A TAR DNA-binding protein 99.7 8.2E-18 2.8E-22 124.9 8.8 76 30-110 6-85 (89)
71 2m2b_A RNA-binding protein 10; 99.7 1.5E-18 5.2E-23 138.0 5.2 80 31-110 19-109 (131)
72 1wez_A HnRNP H', FTP-3, hetero 99.7 5E-18 1.7E-22 129.3 7.8 79 30-110 10-93 (102)
73 1wg5_A Heterogeneous nuclear r 99.7 9.6E-18 3.3E-22 128.0 9.2 79 30-109 10-94 (104)
74 2cpi_A CCR4-NOT transcription 99.7 7.6E-18 2.6E-22 130.0 8.7 81 30-110 10-102 (111)
75 2dgx_A KIAA0430 protein; RRM d 99.7 1.2E-17 4.1E-22 125.5 9.4 77 32-111 6-92 (96)
76 1sjq_A Polypyrimidine tract-bi 99.7 8.4E-18 2.9E-22 128.4 8.5 76 31-112 12-95 (105)
77 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 129.5 9.3 76 34-109 24-104 (114)
78 2dis_A Unnamed protein product 99.7 1E-17 3.5E-22 128.5 9.0 80 32-111 5-94 (109)
79 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.1E-17 7.2E-22 132.1 10.9 77 30-106 58-140 (140)
80 2kn4_A Immunoglobulin G-bindin 99.7 1.4E-17 4.7E-22 136.2 10.0 80 32-111 67-152 (158)
81 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.8E-18 9.5E-23 130.0 5.4 79 30-109 14-98 (100)
82 1x4e_A RNA binding motif, sing 99.7 1.8E-18 6E-23 126.8 4.2 76 32-107 2-83 (85)
83 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-17 4.4E-22 123.9 8.8 78 32-111 5-88 (92)
84 2nlw_A Eukaryotic translation 99.7 1.6E-17 5.3E-22 127.0 9.5 77 32-110 12-101 (105)
85 1x5o_A RNA binding motif, sing 99.7 1.6E-17 5.4E-22 128.5 9.5 79 30-109 20-112 (114)
86 1p1t_A Cleavage stimulation fa 99.7 6.4E-18 2.2E-22 128.4 7.1 80 33-112 6-91 (104)
87 2dgw_A Probable RNA-binding pr 99.7 2.9E-17 1E-21 121.9 10.4 77 32-110 7-88 (91)
88 2kt5_A RNA and export factor-b 99.7 8.9E-18 3E-22 132.0 7.8 81 31-112 31-117 (124)
89 1fxl_A Paraneoplastic encephal 99.7 3.1E-18 1E-22 139.9 5.1 131 34-175 1-140 (167)
90 2qfj_A FBP-interacting repress 99.7 1.2E-17 4E-22 142.5 8.9 133 32-175 25-177 (216)
91 2jwn_A Embryonic polyadenylate 99.7 2.2E-17 7.6E-22 129.6 9.5 77 34-110 35-116 (124)
92 2cq1_A PTB-like protein L; RRM 99.7 3.4E-17 1.2E-21 124.5 10.2 76 30-111 10-93 (101)
93 1b7f_A Protein (SXL-lethal pro 99.7 2.6E-18 8.8E-23 140.8 4.2 131 34-175 2-141 (168)
94 1iqt_A AUF1, heterogeneous nuc 99.7 5.1E-18 1.7E-22 121.3 4.9 70 37-106 1-75 (75)
95 2a3j_A U1 small nuclear ribonu 99.7 2E-17 6.7E-22 131.0 8.5 78 30-110 24-111 (127)
96 3q2s_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 144.5 8.8 76 34-109 67-150 (229)
97 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.2E-18 2.5E-22 121.0 5.4 70 36-106 1-76 (77)
98 1x4a_A Splicing factor, argini 99.7 6.6E-17 2.2E-21 124.1 11.2 78 30-110 17-100 (109)
99 2ki2_A SS-DNA binding protein 99.7 3.5E-18 1.2E-22 126.6 3.7 77 36-112 2-83 (90)
100 2fc9_A NCL protein; structure 99.7 4.4E-17 1.5E-21 123.3 9.7 76 31-110 11-92 (101)
101 2db1_A Heterogeneous nuclear r 99.7 2.6E-17 8.9E-22 128.5 8.6 75 32-107 14-96 (118)
102 1x4d_A Matrin 3; structural ge 99.7 1.3E-17 4.5E-22 127.0 6.7 75 30-110 10-93 (102)
103 2err_A Ataxin-2-binding protei 99.7 3.2E-17 1.1E-21 126.1 8.9 78 30-109 24-107 (109)
104 3r27_A HnRNP L, heterogeneous 99.7 3.3E-17 1.1E-21 123.9 8.6 74 30-109 16-97 (100)
105 1wel_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 132.6 5.0 78 32-109 22-104 (124)
106 2lea_A Serine/arginine-rich sp 99.7 1.2E-17 4E-22 133.7 6.0 80 32-111 44-129 (135)
107 2j8a_A Histone-lysine N-methyl 99.7 3.9E-17 1.3E-21 127.9 8.4 76 36-111 3-98 (136)
108 1wex_A Hypothetical protein (r 99.7 4E-17 1.4E-21 124.7 8.4 75 30-110 10-92 (104)
109 1x4c_A Splicing factor, argini 99.7 1.2E-16 4E-21 122.7 10.9 72 32-110 12-94 (108)
110 2xs2_A Deleted in azoospermia- 99.7 3.1E-17 1.1E-21 124.3 7.4 77 33-110 7-87 (102)
111 2hgl_A HNRPF protein, heteroge 99.7 2.7E-17 9.3E-22 131.7 7.4 78 30-108 39-124 (136)
112 2cjk_A Nuclear polyadenylated 99.7 3.1E-17 1.1E-21 134.3 7.8 131 34-175 2-139 (167)
113 2krb_A Eukaryotic translation 99.7 2E-17 6.7E-22 120.3 5.8 67 35-103 1-80 (81)
114 2ad9_A Polypyrimidine tract-bi 99.7 3.8E-17 1.3E-21 127.7 7.7 76 31-112 27-110 (119)
115 2wbr_A GW182, gawky, LD47780P; 99.7 6.5E-17 2.2E-21 118.7 8.5 68 34-107 6-79 (89)
116 2cpx_A Hypothetical protein FL 99.7 1.3E-17 4.6E-22 129.0 4.6 81 31-111 21-107 (115)
117 2cpj_A Non-POU domain-containi 99.7 8.5E-17 2.9E-21 121.3 8.8 78 27-110 7-90 (99)
118 2fc8_A NCL protein; structure 99.7 1.1E-16 3.7E-21 121.2 9.3 78 30-110 10-93 (102)
119 1fj7_A Nucleolin RBD1, protein 99.7 6.7E-18 2.3E-22 127.8 2.5 78 32-110 14-96 (101)
120 2dnn_A RNA-binding protein 12; 99.7 5.8E-17 2E-21 124.9 7.7 72 34-107 15-91 (109)
121 1nu4_A U1A RNA binding domain; 99.7 3.8E-17 1.3E-21 122.6 6.4 78 31-111 4-91 (97)
122 2ytc_A PRE-mRNA-splicing facto 99.7 1.6E-16 5.3E-21 116.3 9.4 71 30-106 7-84 (85)
123 3md3_A Nuclear and cytoplasmic 99.7 1.1E-17 3.9E-22 136.4 3.5 128 36-175 1-139 (166)
124 2jvr_A Nucleolar protein 3; RN 99.7 9.2E-17 3.1E-21 124.2 8.1 75 31-109 24-105 (111)
125 1why_A Hypothetical protein ri 99.7 1.7E-16 5.8E-21 119.2 9.4 75 30-110 12-94 (97)
126 3lqv_A PRE-mRNA branch site pr 99.7 1.2E-16 4.1E-21 123.7 8.5 78 32-112 5-88 (115)
127 2f3j_A RNA and export factor b 99.7 9.7E-17 3.3E-21 134.2 8.6 79 32-111 85-169 (177)
128 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-16 4.5E-21 119.9 8.2 75 31-110 15-95 (97)
129 2dnq_A RNA-binding protein 4B; 99.7 2E-16 6.8E-21 117.2 9.1 72 32-111 5-82 (90)
130 2lmi_A GRSF-1, G-rich sequence 99.7 2.8E-17 9.7E-22 126.0 4.4 77 31-108 7-91 (107)
131 2lcw_A RNA-binding protein FUS 99.5 5.2E-18 1.8E-22 131.8 0.0 79 32-110 4-96 (116)
132 2hgn_A Heterogeneous nuclear r 99.7 2.7E-17 9.3E-22 132.1 4.2 79 30-110 41-124 (139)
133 2hgm_A HNRPF protein, heteroge 99.7 8.8E-17 3E-21 127.0 7.0 75 31-107 38-119 (126)
134 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-16 7.8E-21 121.2 9.1 73 31-111 27-105 (108)
135 2xnq_A Nuclear polyadenylated 99.7 3.3E-16 1.1E-20 117.9 9.8 74 28-109 15-95 (97)
136 2cpd_A Apobec-1 stimulating pr 99.7 5.8E-16 2E-20 116.7 11.1 74 29-110 9-90 (99)
137 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-16 9.2E-21 120.7 9.4 75 31-111 21-101 (109)
138 2dha_A FLJ20171 protein; RRM d 99.7 6.7E-17 2.3E-21 127.2 6.1 75 32-107 20-103 (123)
139 3egn_A RNA-binding protein 40; 99.7 3.1E-17 1.1E-21 132.1 4.2 81 32-112 42-133 (143)
140 2la4_A Nuclear and cytoplasmic 99.7 2E-16 6.7E-21 119.7 8.1 71 32-108 24-100 (101)
141 1wf0_A TDP-43, TAR DNA-binding 99.7 2E-16 6.9E-21 116.6 8.0 73 33-110 3-79 (88)
142 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-16 4.4E-21 119.5 6.3 75 31-110 12-92 (96)
143 1wf1_A RNA-binding protein RAL 99.6 4.2E-16 1.5E-20 119.8 9.3 72 31-110 23-101 (110)
144 1x4f_A Matrin 3; structural ge 99.6 1.6E-16 5.4E-21 122.8 6.8 75 30-110 20-103 (112)
145 2dgu_A Heterogeneous nuclear r 99.6 4.7E-16 1.6E-20 118.1 9.2 72 32-111 8-85 (103)
146 2dgt_A RNA-binding protein 30; 99.6 7.4E-16 2.5E-20 114.5 9.8 73 31-111 6-84 (92)
147 2dnp_A RNA-binding protein 14; 99.6 5.8E-16 2E-20 114.6 8.7 73 31-111 5-83 (90)
148 2i2y_A Fusion protein consists 99.6 3.3E-16 1.1E-20 127.1 7.9 75 30-109 68-148 (150)
149 3nmr_A Cugbp ELAV-like family 99.6 5.4E-17 1.8E-21 133.6 3.3 130 34-175 2-146 (175)
150 1x5p_A Negative elongation fac 99.6 2E-15 6.7E-20 113.4 11.5 75 29-111 9-89 (97)
151 2e44_A Insulin-like growth fac 99.6 3.2E-16 1.1E-20 117.3 7.1 76 30-109 10-92 (96)
152 3md3_A Nuclear and cytoplasmic 99.6 9.7E-16 3.3E-20 124.8 10.5 77 31-107 83-165 (166)
153 2hvz_A Splicing factor, argini 99.6 1.8E-16 6.2E-21 119.9 5.6 70 36-110 1-76 (101)
154 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.6E-20 114.2 9.6 74 32-110 5-83 (94)
155 2kvi_A Nuclear polyadenylated 99.6 3.1E-16 1.1E-20 117.7 6.3 72 31-110 6-84 (96)
156 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 127.2 10.4 80 33-112 102-186 (196)
157 1whx_A Hypothetical protein ri 99.6 3.9E-16 1.3E-20 120.5 6.0 71 33-109 8-84 (111)
158 2g4b_A Splicing factor U2AF 65 99.6 1.7E-15 5.8E-20 124.5 10.1 75 33-107 92-172 (172)
159 2yh0_A Splicing factor U2AF 65 99.6 3E-15 1E-19 125.8 11.7 79 33-111 112-196 (198)
160 2cqh_A IGF-II mRNA-binding pro 99.6 5.3E-16 1.8E-20 115.5 6.3 73 32-111 5-85 (93)
161 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.6E-20 118.4 7.2 74 31-110 21-107 (114)
162 2qfj_A FBP-interacting repress 99.6 2.2E-15 7.5E-20 128.3 9.9 79 33-111 123-207 (216)
163 3smz_A Protein raver-1, ribonu 99.6 8.2E-16 2.8E-20 137.0 7.4 133 32-176 92-237 (284)
164 2cjk_A Nuclear polyadenylated 99.6 8E-16 2.7E-20 125.8 6.7 77 33-109 85-166 (167)
165 2dnl_A Cytoplasmic polyadenyla 99.6 2.5E-15 8.5E-20 116.4 8.1 76 32-108 5-87 (114)
166 1wg1_A KIAA1579 protein, homol 99.6 2.1E-15 7.1E-20 111.3 7.0 70 33-109 3-78 (88)
167 3beg_B Splicing factor, argini 99.6 1.1E-15 3.7E-20 118.7 5.4 64 33-103 14-83 (115)
168 3sde_A Paraspeckle component 1 99.6 6.1E-16 2.1E-20 136.7 4.3 126 30-176 17-148 (261)
169 4f02_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 127.5 8.7 74 34-109 102-181 (213)
170 2voo_A Lupus LA protein; RNA-b 99.6 7.8E-15 2.7E-19 124.2 10.3 75 35-110 109-188 (193)
171 2diu_A KIAA0430 protein; struc 99.6 4.4E-15 1.5E-19 110.1 7.4 69 32-110 5-85 (96)
172 2bz2_A Negative elongation fac 99.6 4.6E-15 1.6E-19 116.3 7.6 75 29-111 33-113 (121)
173 1b7f_A Protein (SXL-lethal pro 99.6 9.5E-15 3.2E-19 119.4 9.5 75 32-106 86-168 (168)
174 3tyt_A Heterogeneous nuclear r 99.6 8E-15 2.7E-19 125.3 9.3 71 33-108 2-79 (205)
175 1fje_B Nucleolin RBD12, protei 99.6 3.3E-16 1.1E-20 129.4 0.3 80 31-111 9-93 (175)
176 2hzc_A Splicing factor U2AF 65 99.6 1.1E-14 3.7E-19 106.7 8.2 67 33-105 4-86 (87)
177 3nmr_A Cugbp ELAV-like family 99.6 6.3E-15 2.1E-19 121.1 7.7 74 32-106 92-174 (175)
178 1sjr_A Polypyrimidine tract-bi 99.5 1E-14 3.5E-19 119.7 8.7 71 35-109 46-124 (164)
179 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-14 5.2E-19 114.4 9.4 72 34-110 27-107 (130)
180 2e5i_A Heterogeneous nuclear r 99.5 2.8E-14 9.7E-19 112.1 9.6 72 33-110 21-103 (124)
181 1fxl_A Paraneoplastic encephal 99.5 1.9E-14 6.5E-19 117.2 8.6 74 33-106 86-167 (167)
182 2pe8_A Splicing factor 45; RRM 99.5 5.1E-14 1.7E-18 107.6 9.9 76 32-107 5-92 (105)
183 3pgw_A U1-A; protein-RNA compl 99.5 3E-14 1E-18 126.7 10.0 77 31-110 5-91 (282)
184 2g4b_A Splicing factor U2AF 65 99.5 1.9E-14 6.6E-19 118.1 7.6 127 33-176 2-147 (172)
185 2ghp_A U4/U6 snRNA-associated 99.5 6.9E-15 2.4E-19 131.5 4.7 132 32-175 114-264 (292)
186 3smz_A Protein raver-1, ribonu 99.5 7.3E-14 2.5E-18 124.3 10.3 82 31-113 180-268 (284)
187 2ghp_A U4/U6 snRNA-associated 99.5 6.4E-14 2.2E-18 125.2 9.6 78 32-109 207-291 (292)
188 2adc_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 121.8 8.8 75 30-109 29-110 (229)
189 1fje_B Nucleolin RBD12, protei 99.5 4.2E-14 1.4E-18 116.6 7.5 73 32-109 96-174 (175)
190 3u1l_A PRE-mRNA-splicing facto 99.5 3.3E-14 1.1E-18 123.9 6.6 74 32-111 131-231 (240)
191 2yh0_A Splicing factor U2AF 65 99.5 1.5E-14 5E-19 121.5 4.1 70 34-109 3-88 (198)
192 2dit_A HIV TAT specific factor 99.5 3.7E-13 1.3E-17 103.7 10.0 78 29-110 9-103 (112)
193 3pgw_A U1-A; protein-RNA compl 99.4 3.3E-13 1.1E-17 119.9 10.4 72 31-107 203-281 (282)
194 3tyt_A Heterogeneous nuclear r 99.4 1.4E-13 4.6E-18 117.6 6.7 73 32-106 120-204 (205)
195 1qm9_A Polypyrimidine tract-bi 99.4 1.7E-13 5.8E-18 115.4 6.3 71 34-109 2-79 (198)
196 1qm9_A Polypyrimidine tract-bi 99.4 2.9E-13 1E-17 113.9 7.6 73 32-109 117-197 (198)
197 2adc_A Polypyrimidine tract-bi 99.4 7.8E-13 2.7E-17 114.4 9.6 73 32-109 148-228 (229)
198 3sde_A Paraspeckle component 1 99.4 6.2E-13 2.1E-17 117.3 9.1 78 32-110 93-180 (261)
199 1jmt_A Splicing factor U2AF 35 99.4 2.4E-13 8.2E-18 103.6 3.6 68 38-106 18-103 (104)
200 3v4m_A Splicing factor U2AF 65 99.3 1.7E-12 5.9E-17 99.0 7.5 75 33-107 3-95 (105)
201 3ue2_A Poly(U)-binding-splicin 99.3 2.3E-12 7.8E-17 100.4 6.9 75 33-107 18-107 (118)
202 3tht_A Alkylated DNA repair pr 99.3 5.2E-12 1.8E-16 115.5 7.9 73 30-108 13-98 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.9E-11 9.7E-16 91.4 7.7 62 45-111 27-92 (100)
204 3s6e_A RNA-binding protein 39; 99.1 3.2E-10 1.1E-14 87.6 8.4 72 32-107 4-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 2.8E-10 9.5E-15 88.6 7.0 71 31-107 14-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 1.2E-09 4.1E-14 80.1 8.6 71 32-110 4-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.8 9.4E-09 3.2E-13 75.8 5.6 70 30-107 10-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.5 1.8E-07 6.1E-12 80.1 6.8 62 46-107 140-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.1 1.1E-05 3.8E-10 60.7 7.3 67 34-106 20-97 (117)
210 3pgw_S U1-70K; protein-RNA com 97.8 9.4E-06 3.2E-10 76.6 4.3 42 42-88 4-52 (437)
211 1wey_A Calcipressin 1; structu 97.2 0.00096 3.3E-08 49.8 7.3 71 33-109 3-84 (104)
212 1uw4_A UPF3X; nonsense mediate 96.9 0.0036 1.2E-07 45.7 7.5 63 36-98 2-72 (91)
213 2dhx_A Poly (ADP-ribose) polym 96.9 0.0043 1.5E-07 46.1 7.7 65 34-106 7-81 (104)
214 3ctr_A Poly(A)-specific ribonu 96.7 0.002 6.7E-08 47.6 5.0 46 35-89 6-51 (101)
215 1whv_A Poly(A)-specific ribonu 96.6 0.004 1.4E-07 45.8 5.9 49 32-89 13-61 (100)
216 2kn4_A Immunoglobulin G-bindin 96.2 0.00026 8.9E-09 56.7 -2.8 24 64-89 2-25 (158)
217 3pq1_A Poly(A) RNA polymerase; 95.5 0.0085 2.9E-07 56.5 3.8 49 35-89 53-101 (464)
218 2l08_A Regulator of nonsense t 95.1 0.019 6.4E-07 42.3 3.7 65 34-98 8-80 (97)
219 1wwh_A Nucleoporin 35, nucleop 93.1 0.32 1.1E-05 37.1 7.1 67 33-106 22-94 (119)
220 3p3d_A Nucleoporin 53; structu 88.3 0.6 2.1E-05 36.1 4.6 72 35-107 7-97 (132)
221 3d45_A Poly(A)-specific ribonu 85.2 1.2 4.3E-05 42.3 6.0 47 34-89 439-485 (507)
222 2i2y_A Fusion protein consists 82.6 0.94 3.2E-05 35.2 3.4 34 74-108 10-50 (150)
223 4f25_A Polyadenylate-binding p 76.2 0.56 1.9E-05 34.9 0.2 20 32-51 94-113 (115)
224 2lkz_A RNA-binding protein 5; 56.0 3.9 0.00013 29.2 1.2 40 128-176 25-64 (95)
225 2g0c_A ATP-dependent RNA helic 53.6 27 0.00093 23.4 5.3 62 37-106 2-74 (76)
226 4e8u_A Putative uncharacterize 43.0 46 0.0016 26.7 5.6 50 37-89 14-74 (172)
227 3ts2_A Protein LIN-28 homolog 40.9 3.9 0.00013 32.1 -1.0 28 50-85 2-29 (148)
228 2j8a_A Histone-lysine N-methyl 35.0 9 0.00031 29.6 0.3 35 129-174 23-57 (136)
229 3fut_A Dimethyladenosine trans 34.3 31 0.0011 29.6 3.7 34 36-70 111-144 (271)
230 3uzu_A Ribosomal RNA small sub 32.4 14 0.00046 32.0 1.0 37 35-71 114-150 (279)
231 2cs4_A Protein C12ORF2; GTP bi 27.2 33 0.0011 24.7 2.2 25 35-59 16-40 (95)
232 3tqs_A Ribosomal RNA small sub 24.0 46 0.0016 28.1 2.9 34 37-70 98-131 (255)
233 1qyr_A KSGA, high level kasuga 23.5 49 0.0017 27.9 3.0 33 36-68 91-123 (252)
234 3ftd_A Dimethyladenosine trans 23.1 43 0.0015 28.1 2.5 34 36-69 96-129 (249)
235 1i4w_A Mitochondrial replicati 20.3 60 0.0021 29.0 3.0 23 36-58 143-165 (353)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=8e-23 Score=193.84 Aligned_cols=79 Identities=33% Similarity=0.563 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.||+++|..+|++||.|+.|.|+.++.||+++|||||+|.+.++ +|||+.|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999887 7899999999999999
Q ss_pred cCCcc
Q 022814 106 VAKYK 110 (291)
Q Consensus 106 a~~~~ 110 (291)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97554
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=144.10 Aligned_cols=77 Identities=30% Similarity=0.585 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
....++|||+|||+.+|+++|.++|++||+|..|.|+.++.||.++|||||+|.+.++ .|||..|+|++|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999887 7999999999999999
Q ss_pred cCC
Q 022814 106 VAK 108 (291)
Q Consensus 106 a~~ 108 (291)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 865
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=141.45 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.+|.++|||+|||+.+++++|+++|++||.|..|.|+.|+.||+++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3678999999999999999999999999999999999999999999999999999887 7999999999999999
Q ss_pred cCCcc
Q 022814 106 VAKYK 110 (291)
Q Consensus 106 a~~~~ 110 (291)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 86443
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=4.3e-20 Score=137.83 Aligned_cols=78 Identities=28% Similarity=0.468 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh------hc-CCceeCCeEEEEecc
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL-NGAQILGRTIRVDHV 106 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~l-ng~~i~gr~i~V~~a 106 (291)
+++|||+|||+.+|+++|+++|++|| +|.+|.|+.++.||.++|||||+|.+.++ .| ++..|+|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999887 34 457899999999999
Q ss_pred CCcccc
Q 022814 107 AKYKKK 112 (291)
Q Consensus 107 ~~~~~~ 112 (291)
.+..+.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 5
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=9.8e-20 Score=137.08 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC--eeEEEEeecCCCCCcceEEEEEEcChhh------hcCCc----eeCCe
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE--IVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGA----QILGR 99 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~--I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~----~i~gr 99 (291)
....+||||+|||+.+|+++|.++|++||. |..|.|++|+.||.++|||||+|.+.++ .|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999995 6799999999999999999999999887 67775 59999
Q ss_pred EEEEeccCC
Q 022814 100 TIRVDHVAK 108 (291)
Q Consensus 100 ~i~V~~a~~ 108 (291)
+|.|.+|.+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 6
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=131.74 Aligned_cols=80 Identities=36% Similarity=0.554 Sum_probs=74.1
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
....++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456778999999999999999999999999999999999999999999999999999887 6999999999999
Q ss_pred EeccCC
Q 022814 103 VDHVAK 108 (291)
Q Consensus 103 V~~a~~ 108 (291)
|.++..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999863
No 7
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=134.89 Aligned_cols=83 Identities=28% Similarity=0.549 Sum_probs=76.3
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
.....+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455778999999999999999999999999999999999999899999999999999887 6999999999999
Q ss_pred EeccCCccc
Q 022814 103 VDHVAKYKK 111 (291)
Q Consensus 103 V~~a~~~~~ 111 (291)
|.++.+...
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999976553
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.1e-18 Score=135.43 Aligned_cols=84 Identities=29% Similarity=0.533 Sum_probs=76.7
Q ss_pred cccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEE
Q 022814 28 WHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTI 101 (291)
Q Consensus 28 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i 101 (291)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 33455788999999999999999999999999999999999998899999999999999887 689999999999
Q ss_pred EEeccCCccc
Q 022814 102 RVDHVAKYKK 111 (291)
Q Consensus 102 ~V~~a~~~~~ 111 (291)
.|.++.+...
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999976654
No 9
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=135.06 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=76.6
Q ss_pred cccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcC------Cce
Q 022814 28 WHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLN------GAQ 95 (291)
Q Consensus 28 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~ln------g~~ 95 (291)
......+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++ .|| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 33456778999999999999999999999999999999999999999999999999999887 688 999
Q ss_pred eCCeEEEEeccCCccc
Q 022814 96 ILGRTIRVDHVAKYKK 111 (291)
Q Consensus 96 i~gr~i~V~~a~~~~~ 111 (291)
|+|+.|.|.++.+...
T Consensus 88 ~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSSCEEEEECCCCCCC
T ss_pred EcCEEEEEEECCCCcc
Confidence 9999999999976543
No 10
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1e-18 Score=128.67 Aligned_cols=77 Identities=30% Similarity=0.620 Sum_probs=71.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++ .+++..|+|+.|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999887 678899999999998
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-19 Score=133.52 Aligned_cols=81 Identities=26% Similarity=0.451 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999887 699999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976654
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=129.24 Aligned_cols=77 Identities=30% Similarity=0.587 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3567899999999999999999999999999999999998899999999999999887 6899999999999999
Q ss_pred cCC
Q 022814 106 VAK 108 (291)
Q Consensus 106 a~~ 108 (291)
+.+
T Consensus 83 a~~ 85 (87)
T 3bs9_A 83 ATR 85 (87)
T ss_dssp EC-
T ss_pred cCC
Confidence 865
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1e-18 Score=127.37 Aligned_cols=76 Identities=24% Similarity=0.541 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~ 108 (291)
..+|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3589999999999999999999999999999999998899999999999999887 6999999999999999976
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.1e-18 Score=130.94 Aligned_cols=80 Identities=30% Similarity=0.607 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
|+++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999999999999999899999999999999887 789999999999999998
Q ss_pred Cccccc
Q 022814 108 KYKKKE 113 (291)
Q Consensus 108 ~~~~~~ 113 (291)
+.....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 766543
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1e-18 Score=135.59 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=75.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345677999999999999999999999999999999999999999999999999999887 78999999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99976543
No 16
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=131.79 Aligned_cols=81 Identities=35% Similarity=0.604 Sum_probs=74.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
....+.++|||+|||+.+++++|+++|++|| |..|.|+.++.||.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3456789999999999999999999999997 9999999999999999999999999887 789999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9976543
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=131.78 Aligned_cols=82 Identities=29% Similarity=0.609 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEec
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~ 105 (291)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999887 7899999999999999
Q ss_pred cCCcccc
Q 022814 106 VAKYKKK 112 (291)
Q Consensus 106 a~~~~~~ 112 (291)
+.+....
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9866543
No 18
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=9.4e-19 Score=128.13 Aligned_cols=75 Identities=37% Similarity=0.634 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999999999999999999998899999999999999887 7899999999999998
Q ss_pred c
Q 022814 106 V 106 (291)
Q Consensus 106 a 106 (291)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.1e-19 Score=133.40 Aligned_cols=82 Identities=35% Similarity=0.585 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999999899999999999999887 689999999999999
Q ss_pred ccCCcccc
Q 022814 105 HVAKYKKK 112 (291)
Q Consensus 105 ~a~~~~~~ 112 (291)
++.+....
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 20
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=133.46 Aligned_cols=84 Identities=25% Similarity=0.512 Sum_probs=76.4
Q ss_pred cccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEEcChhh------hc-CCceeCCe
Q 022814 28 WHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD-KGTGKPRGFAFVAYEDQRN------NL-NGAQILGR 99 (291)
Q Consensus 28 ~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d-~~tg~s~G~aFV~F~~~~~------~l-ng~~i~gr 99 (291)
......+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+ ..++.++|||||+|.+.++ .| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3445678899999999999999999999999999999999999 7899999999999999887 67 99999999
Q ss_pred EEEEeccCCccc
Q 022814 100 TIRVDHVAKYKK 111 (291)
Q Consensus 100 ~i~V~~a~~~~~ 111 (291)
.|.|.++.+...
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999976543
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=130.59 Aligned_cols=79 Identities=34% Similarity=0.689 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.+++++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3578999999999999999999999999999999999999899999999999999887 6999999999999999
Q ss_pred cCCcc
Q 022814 106 VAKYK 110 (291)
Q Consensus 106 a~~~~ 110 (291)
+.+..
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97654
No 22
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=131.86 Aligned_cols=79 Identities=29% Similarity=0.475 Sum_probs=73.4
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEEcChhh------hcCCc
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD--------VNLVRDKGTGKPRGFAFVAYEDQRN------NLNGA 94 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~ 94 (291)
....++.++|||+|||+.+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++ .|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345678899999999999999999999999999999 9999999899999999999999887 68999
Q ss_pred eeCCeEEEEeccC
Q 022814 95 QILGRTIRVDHVA 107 (291)
Q Consensus 95 ~i~gr~i~V~~a~ 107 (291)
.|+|+.|.|.+|.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=129.48 Aligned_cols=77 Identities=34% Similarity=0.675 Sum_probs=72.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...++.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345778999999999999999999999999999999999999899999999999999887 79999999999999
Q ss_pred ecc
Q 022814 104 DHV 106 (291)
Q Consensus 104 ~~a 106 (291)
.+|
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=131.05 Aligned_cols=80 Identities=26% Similarity=0.448 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4578999999999999999999999999999999999999899999999999999887 7899999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 976654
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-19 Score=131.34 Aligned_cols=79 Identities=25% Similarity=0.500 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i-~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++++|||+|||+.+++++|..+|++||.|..| .|+.++.+|.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 999998899999999999999887 6999999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976553
No 26
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=134.51 Aligned_cols=86 Identities=29% Similarity=0.597 Sum_probs=77.5
Q ss_pred CCcccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC
Q 022814 24 DDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 24 ~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~ 97 (291)
...+.+...++.++|||+|||+.+++++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334445556788999999999999999999999999999999999999899999999999999887 68999999
Q ss_pred CeEEEEeccCCc
Q 022814 98 GRTIRVDHVAKY 109 (291)
Q Consensus 98 gr~i~V~~a~~~ 109 (291)
|+.|.|.++.+.
T Consensus 95 g~~l~V~~a~~k 106 (108)
T 2jrs_A 95 GRPMKVGHVTER 106 (108)
T ss_dssp SSCCEEECSCSS
T ss_pred CEEEEEEEcccC
Confidence 999999998754
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.4e-19 Score=133.32 Aligned_cols=82 Identities=29% Similarity=0.537 Sum_probs=75.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.|+.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999999999999999999999887 69999999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99976543
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=1.8e-18 Score=131.80 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=74.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC---eE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG---RT 100 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g---r~ 100 (291)
...++.++|||+|||+.+++++|.++|++||.|..|.|+.++ +|.++|||||+|.+.++ .||+..|.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 345678999999999999999999999999999999999998 89999999999999887 689999998 99
Q ss_pred EEEeccCCcccc
Q 022814 101 IRVDHVAKYKKK 112 (291)
Q Consensus 101 i~V~~a~~~~~~ 112 (291)
|.|.++.+....
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999876543
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=129.87 Aligned_cols=80 Identities=26% Similarity=0.558 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998 99999999999999887 789999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9976543
No 30
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=131.82 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT-GKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~t-g~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|+++|++|| |..|.|+.++.| |.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 346779999999999999999999999999 999999999988 9999999999999887 789999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976543
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=133.34 Aligned_cols=80 Identities=31% Similarity=0.545 Sum_probs=73.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 345677899999999999999999999999999999999999999999999999999887 68999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 998654
No 32
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=1.3e-18 Score=133.78 Aligned_cols=81 Identities=32% Similarity=0.545 Sum_probs=74.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678899999999999999999999999999999999999999999999999999887 69999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9987544
No 33
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=1.6e-19 Score=155.04 Aligned_cols=132 Identities=22% Similarity=0.355 Sum_probs=96.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..|.+||||+|||+.+|+++|.++|++||+|.+|.|+.++.||.++|||||+|.+.++ .||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4578899999999999999999999999999999999999999999999999999887 7899999999999998
Q ss_pred cCCccccchhHHHH-H----HhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 106 VAKYKKKEEEDEET-R----QRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 106 a~~~~~~~~~~~~~-~----~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
+............. . ...-....+...|. .+|.+..|.+..+..+ .+|||||.|....
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~--~~G~i~~~~i~~d~~~-----------~~g~~fV~f~~~~ 154 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS--AFGNILSCKVVCDENG-----------SKGYGFVHFETQE 154 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHG--GGSCEEEEEEEEETTE-----------EEEEEEEEESSHH
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHh--hcCCeEEEEeeccCCC-----------CceEEEEEeCCHH
Confidence 86543221100000 0 00001223333333 3567888888877432 3578899987644
No 34
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=8.6e-19 Score=138.13 Aligned_cols=85 Identities=29% Similarity=0.490 Sum_probs=76.5
Q ss_pred cccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe
Q 022814 26 ASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR 99 (291)
Q Consensus 26 ~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr 99 (291)
.+......+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++ .|||..|+|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3334556778999999999999999999999999999999999999999999999999999887 6899999999
Q ss_pred EEEEeccCCcc
Q 022814 100 TIRVDHVAKYK 110 (291)
Q Consensus 100 ~i~V~~a~~~~ 110 (291)
.|.|.++.+..
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999986544
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=3e-19 Score=132.70 Aligned_cols=77 Identities=21% Similarity=0.443 Sum_probs=66.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G--~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
.+|||+|||+.+|+++|+++|++|| .|..|.|+.++.||.++|||||+|.+.++ .|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999887 799999999999999997
Q ss_pred Ccccc
Q 022814 108 KYKKK 112 (291)
Q Consensus 108 ~~~~~ 112 (291)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 66543
No 36
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2e-18 Score=132.95 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=70.4
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
.....+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.||.++|||||+|.+.++ .+.+..|+|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999887 44569999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976543
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=130.18 Aligned_cols=79 Identities=25% Similarity=0.455 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG---TGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~---tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
++.++|||+|||+.+++++|.++|++||.|..|.|+.++. |+.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5789999999999999999999999999999999999876 66999999999999887 69999999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976553
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=132.28 Aligned_cols=80 Identities=39% Similarity=0.717 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..++.++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999887 789999999999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987654
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=132.62 Aligned_cols=82 Identities=33% Similarity=0.528 Sum_probs=75.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEEcChhh------hcCCce
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--------DVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQ 95 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~--------~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~ 95 (291)
....+.++|||+|||+.+|+++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++ .||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4457889999999999999999999999999999 69999998899999999999999887 689999
Q ss_pred eCCeEEEEeccCCccc
Q 022814 96 ILGRTIRVDHVAKYKK 111 (291)
Q Consensus 96 i~gr~i~V~~a~~~~~ 111 (291)
|.|+.|.|.++.+...
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999976543
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=2.2e-18 Score=133.95 Aligned_cols=76 Identities=22% Similarity=0.468 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
...+|||+|||+.+|+++|+++|++||.|.+|.|+.+. +.++|||||+|.+.++ +|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999986 5589999999999887 789999999999999987
Q ss_pred Cccc
Q 022814 108 KYKK 111 (291)
Q Consensus 108 ~~~~ 111 (291)
+...
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 41
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=130.05 Aligned_cols=79 Identities=27% Similarity=0.480 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE----
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV-DVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT---- 100 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~-~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~---- 100 (291)
..++++|||+|||+.+++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++ .|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 46789999999999999999999999999999 99999999999999999999999887 69999999999
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987553
No 42
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=130.80 Aligned_cols=81 Identities=28% Similarity=0.493 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEec
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~ 105 (291)
...+.++|||+|||+.+++++|+++|++||+|..|.|+.++.++.++|||||+|.+.++ .++++.|+|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999887 4499999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 976654
No 43
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=133.12 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
..+.++|||+|||+.+|+++|.++|++||+|..|.|+.++. |.++|||||+|.+.++ .|++..|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999986 9999999999999887 78999999999999987
Q ss_pred CC
Q 022814 107 AK 108 (291)
Q Consensus 107 ~~ 108 (291)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 44
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=3.3e-19 Score=135.27 Aligned_cols=77 Identities=22% Similarity=0.474 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC-e
Q 022814 33 KDSAYVYVGGIPF------DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG-R 99 (291)
Q Consensus 33 ~~~~~lfVgnL~~------~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g-r 99 (291)
...++|||+|||+ .+++++|.++|++||.|..|.|+.++.||+++|||||+|.+.++ .|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999877 799999999 9
Q ss_pred EEEEeccCCc
Q 022814 100 TIRVDHVAKY 109 (291)
Q Consensus 100 ~i~V~~a~~~ 109 (291)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998643
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.7e-18 Score=133.74 Aligned_cols=76 Identities=21% Similarity=0.465 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..++.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34667999999999999999999999999999999999999899999999999999887 699999999999998
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=131.37 Aligned_cols=80 Identities=30% Similarity=0.510 Sum_probs=73.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++ .|++ .|+|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999887 6777 899999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9996543
No 47
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=9e-19 Score=147.27 Aligned_cols=135 Identities=19% Similarity=0.359 Sum_probs=99.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEec
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~ 105 (291)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .+++..|+|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999999999999999999999887 6688999999999999
Q ss_pred cCCccccchhHHHHHH---------hhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 106 VAKYKKKEEEDEETRQ---------RMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 106 a~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
+.+............. ..-....+...|. .+|.+..+.+..+..++. ..||+||.|....
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~--~~G~i~~v~i~~~~~~g~---------~~g~afV~F~~~~ 157 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE--QYGKIEVIEIMTDRGSGK---------KRGFAFVTFDDHD 157 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHT--TTSCEEEEEEEECTTTCC---------EEEEEEEEESSHH
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh--cCCCeEEEEEeecCCCCC---------ccceEEEEECCHH
Confidence 8765332111100000 0002233344443 467788888888876655 4578899887643
No 48
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=3.7e-18 Score=130.52 Aligned_cols=76 Identities=22% Similarity=0.467 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999999999999999999999 99999999999999887 699999999999999
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=130.38 Aligned_cols=80 Identities=18% Similarity=0.405 Sum_probs=73.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999887 69999999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99976654
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=1.9e-18 Score=131.89 Aligned_cols=82 Identities=28% Similarity=0.549 Sum_probs=74.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee---CCeE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI---LGRT 100 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i---~gr~ 100 (291)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.||.++|||||+|.+.++ .||+..| .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345678999999999999999999999999999999999999999999999999999887 6999888 8999
Q ss_pred EEEeccCCccc
Q 022814 101 IRVDHVAKYKK 111 (291)
Q Consensus 101 i~V~~a~~~~~ 111 (291)
|.|.++.+...
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999976543
No 51
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=127.81 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=73.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh----hcCCceeCCeEEEEec
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~----~lng~~i~gr~i~V~~ 105 (291)
....+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++ ..++..|+|+.|.|.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEEC
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEe
Confidence 345678999999999999999999999999999999999999899999999999999887 2357889999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976543
No 52
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=133.54 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=72.5
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEI-VDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I-~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|+++|++||.| ..|.|+.++ +|.++|||||+|.+.++ .+|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 345678999999999999999999999999999 899999999 99999999999999887 56999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 53
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=5.2e-18 Score=138.68 Aligned_cols=81 Identities=32% Similarity=0.533 Sum_probs=75.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|.++|++||+|..|.|+.++.|+.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344678999999999999999999999999999999999999999999999999999887 69999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997654
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=6.6e-18 Score=124.63 Aligned_cols=76 Identities=32% Similarity=0.625 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .||+..|+|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 35799999999999999999999999999999999999899999999999999887 7999999999999999865
Q ss_pred c
Q 022814 109 Y 109 (291)
Q Consensus 109 ~ 109 (291)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=126.29 Aligned_cols=78 Identities=21% Similarity=0.443 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK-PRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~-s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+++|||+|||+.+|+++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999987766 99999999999887 6999999999999999
Q ss_pred cCCcc
Q 022814 106 VAKYK 110 (291)
Q Consensus 106 a~~~~ 110 (291)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 56
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-18 Score=127.50 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=71.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.+. +.++|||||+|.+.++ .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 445678999999999999999999999999999999999986 3379999999999887 69999999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99976543
No 57
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=139.89 Aligned_cols=76 Identities=24% Similarity=0.480 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G--~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..++|||+|||+.+|+++|.++|++|| .|..|.|+.|+.||.++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999887 7899999999999999
Q ss_pred cCCc
Q 022814 106 VAKY 109 (291)
Q Consensus 106 a~~~ 109 (291)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 58
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=133.50 Aligned_cols=78 Identities=24% Similarity=0.507 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.||.++|||||+|.+.++ .+++..|+|+.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 446899999999999999999999999999999999999899999999999999887 458999999999999997
Q ss_pred Ccc
Q 022814 108 KYK 110 (291)
Q Consensus 108 ~~~ 110 (291)
+..
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=129.25 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..+..++|||+|||+.+++++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999887 789999999999999
Q ss_pred ccCCc
Q 022814 105 HVAKY 109 (291)
Q Consensus 105 ~a~~~ 109 (291)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98643
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=6e-18 Score=126.50 Aligned_cols=76 Identities=30% Similarity=0.601 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+++++|+++|++||+|..|.|+.++ +|.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 45677999999999999999999999999999999999998 49999999999999887 699999999999999
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 885
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=126.61 Aligned_cols=82 Identities=28% Similarity=0.553 Sum_probs=73.1
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
.....+.++|||+|||+.+|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++ .||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34567789999999999999999999999999999999999863 489999999999887 6899999999999
Q ss_pred EeccCCcccc
Q 022814 103 VDHVAKYKKK 112 (291)
Q Consensus 103 V~~a~~~~~~ 112 (291)
|.++.+....
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9999876543
No 62
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=129.30 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=73.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345678999999999999999999999999999999999998 79999999999999887 69999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9986543
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=132.19 Aligned_cols=78 Identities=33% Similarity=0.666 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999998 99999999999999887 6999999999999999
Q ss_pred cCCcc
Q 022814 106 VAKYK 110 (291)
Q Consensus 106 a~~~~ 110 (291)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97554
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=5.2e-18 Score=140.10 Aligned_cols=82 Identities=32% Similarity=0.536 Sum_probs=74.1
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.||.++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999999999999999999999887 69999999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99976543
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=3.6e-18 Score=135.60 Aligned_cols=81 Identities=37% Similarity=0.565 Sum_probs=74.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...++.++|||+|||+.+++++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999887 69999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987643
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.1e-18 Score=129.00 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++.++|||+|||+.+|+++|+++|++||.|..|.|+.+..+|.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 4567999999999999999999999999999999999998899999999999999887 6899999999999998
Q ss_pred cCC
Q 022814 106 VAK 108 (291)
Q Consensus 106 a~~ 108 (291)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.2e-18 Score=123.33 Aligned_cols=70 Identities=29% Similarity=0.519 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
+|||+|||+.+++++|..+|++||+|..|.|+.++.+|.++|||||+|.+.++ .||+..|+|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999887 78999999999999875
No 68
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=129.50 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCce-eCCeEEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQ-CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQ-ILGRTIRV 103 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~-i~gr~i~V 103 (291)
..+.++|||+|||+.+|+++|.++|++ ||.|..|.|+.+. +|.++|||||+|.+.++ .||+.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 467899999999999999999999999 9999999999999 99999999999999887 699999 99999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987554
No 69
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=9.6e-18 Score=134.31 Aligned_cols=80 Identities=29% Similarity=0.449 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.||.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44667899999999999999999999999999999999999899999999999999887 699999999999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 997554
No 70
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=8.2e-18 Score=124.87 Aligned_cols=76 Identities=29% Similarity=0.508 Sum_probs=62.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh--hcCCcee--CCeEEEEec
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--NLNGAQI--LGRTIRVDH 105 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~--~lng~~i--~gr~i~V~~ 105 (291)
...++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++ +|++..+ .|+.|.|.+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISN 80 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEE
Confidence 44678899999999999999999999999999999999875 69999999999988 7888665 599999999
Q ss_pred cCCcc
Q 022814 106 VAKYK 110 (291)
Q Consensus 106 a~~~~ 110 (291)
+.+..
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87654
No 71
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=137.96 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE--EEEeecCCCCCcceEEEEEEcChhh-----hcCCc----eeCCe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD--VNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGA----QILGR 99 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~----~i~gr 99 (291)
...+.++|||+|||+.+|+++|+++|++||.|.. |.|+.|+.||.++|||||+|.+.++ .|||. .|+|+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCCCE
Confidence 3467889999999999999999999999999977 9999999999999999999999832 89999 99999
Q ss_pred EEEEeccCCcc
Q 022814 100 TIRVDHVAKYK 110 (291)
Q Consensus 100 ~i~V~~a~~~~ 110 (291)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 72
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5e-18 Score=129.29 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=70.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
....+.++|||+|||+.+|+++|+++|++|| |+.|.|+.++ +|+++|||||+|.+.++ +||+..|+++.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 3456778999999999999999999999999 4599999998 99999999999999887 789999999999998
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
.+.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 876443
No 73
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=127.97 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=70.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~-i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++ .+|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34467899999999999999999999999999987 889888 699999999999999887 55999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
..+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 887643
No 74
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.6e-18 Score=130.05 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=72.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEEeecCCCC---CcceEEEEEEcChhh------hcCCceeC
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLL---AVFAQCGEIVDVNLVRDKGTG---KPRGFAFVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~---~~F~~~G~I~~i~i~~d~~tg---~s~G~aFV~F~~~~~------~lng~~i~ 97 (291)
....+.++|||+|||+.+++++|. ++|++||+|..|.|+.+..++ .++|||||+|.+.++ .|||..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 445678899999999999999999 999999999999999988654 566999999999887 78999999
Q ss_pred CeEEEEeccCCcc
Q 022814 98 GRTIRVDHVAKYK 110 (291)
Q Consensus 98 gr~i~V~~a~~~~ 110 (291)
|+.|.|.++.+..
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999997654
No 75
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=125.54 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTI 101 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~----~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i 101 (291)
..+.++|||+|||+.+++++|+ ++|++||+|..|.|+.++.+ +|||||+|.+.++ .|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4678899999999999999999 99999999999999999855 8999999999887 699999999999
Q ss_pred EEeccCCccc
Q 022814 102 RVDHVAKYKK 111 (291)
Q Consensus 102 ~V~~a~~~~~ 111 (291)
.|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=128.42 Aligned_cols=76 Identities=16% Similarity=0.333 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcC--CceeCCeEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLN--GAQILGRTIR 102 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~ln--g~~i~gr~i~ 102 (291)
..++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++ .|+ +..|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4678899999999999999999999999999999999975 7999999999886 454 5899999999
Q ss_pred EeccCCcccc
Q 022814 103 VDHVAKYKKK 112 (291)
Q Consensus 103 V~~a~~~~~~ 112 (291)
|.++.+....
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999766544
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=129.50 Aligned_cols=76 Identities=24% Similarity=0.477 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.||.++|||||+|.+.++ .||+..|+|+.|.|.++.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 45799999999999999999999999999999999999999999999999999887 7899999999999999864
Q ss_pred c
Q 022814 109 Y 109 (291)
Q Consensus 109 ~ 109 (291)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=128.48 Aligned_cols=80 Identities=31% Similarity=0.481 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEe-ecCCCCCcceEEEEEEcChhh------hcC--CceeCCeEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLV-RDKGTGKPRGFAFVAYEDQRN------NLN--GAQILGRTI 101 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~i~i~-~d~~tg~s~G~aFV~F~~~~~------~ln--g~~i~gr~i 101 (291)
..+.++|||+|||+.+|+++|.++|++||. |..|.|+ .+..+|.++|||||+|.+.++ .|+ +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999998 888899999999999999887 675 589999999
Q ss_pred EEeccCCccc
Q 022814 102 RVDHVAKYKK 111 (291)
Q Consensus 102 ~V~~a~~~~~ 111 (291)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976553
No 79
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=132.11 Aligned_cols=77 Identities=36% Similarity=0.620 Sum_probs=71.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...++.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999999899999999999999887 68999999999999
Q ss_pred ecc
Q 022814 104 DHV 106 (291)
Q Consensus 104 ~~a 106 (291)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=1.4e-17 Score=136.21 Aligned_cols=80 Identities=30% Similarity=0.518 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999887 6899999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 986543
No 81
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=129.98 Aligned_cols=79 Identities=27% Similarity=0.481 Sum_probs=69.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-CCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK-GTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~-~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
......++|||+|||+.+++++|+.+|++|| |..|.|+.+. .+|+++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3456789999999999999999999999999 9999999998 699999999999999887 88999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998754
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-18 Score=126.82 Aligned_cols=76 Identities=22% Similarity=0.410 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3578999999999999999999999999999999999999899999999999999887 6999999999998876
Q ss_pred cC
Q 022814 106 VA 107 (291)
Q Consensus 106 a~ 107 (291)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=1.3e-17 Score=123.94 Aligned_cols=78 Identities=26% Similarity=0.484 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467899999999999999999999999999999999985 79999999999999887 6999999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 976543
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=127.00 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe
Q 022814 32 YKDSAYVYVGGIPFDL------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR 99 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~------te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr 99 (291)
....++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++ .|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 789999999999999999998 3589999999999999886 6999999998
Q ss_pred -EEEEeccCCcc
Q 022814 100 -TIRVDHVAKYK 110 (291)
Q Consensus 100 -~i~V~~a~~~~ 110 (291)
+|.|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987543
No 85
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=128.54 Aligned_cols=79 Identities=20% Similarity=0.479 Sum_probs=71.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee-------
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI------- 96 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i------- 96 (291)
....+.++|||+|||+.+|+++|+.+|++||.|..|.|+.++ +|.++|||||+|.+.++ .|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345678999999999999999999999999999999999998 99999999999999887 6999999
Q ss_pred -CCeEEEEeccCCc
Q 022814 97 -LGRTIRVDHVAKY 109 (291)
Q Consensus 97 -~gr~i~V~~a~~~ 109 (291)
.+++|.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999988743
No 86
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-18 Score=128.44 Aligned_cols=80 Identities=44% Similarity=0.815 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999999999899999999999999887 69999999999999999
Q ss_pred CCcccc
Q 022814 107 AKYKKK 112 (291)
Q Consensus 107 ~~~~~~ 112 (291)
.+....
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 765543
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=121.88 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
..+.++|||+|||+.+|+++|+++|++| .|..|.|+.+ .+|.++|||||+|.+.++ .||+..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 4568999999999999999999999999 9999999999 699999999999999887 78999999999999998
Q ss_pred CCcc
Q 022814 107 AKYK 110 (291)
Q Consensus 107 ~~~~ 110 (291)
.+..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7654
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=8.9e-18 Score=132.04 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999887 699999999999999
Q ss_pred ccCCcccc
Q 022814 105 HVAKYKKK 112 (291)
Q Consensus 105 ~a~~~~~~ 112 (291)
+|.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99765443
No 89
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=3.1e-18 Score=139.93 Aligned_cols=131 Identities=23% Similarity=0.362 Sum_probs=95.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999999999999999999887 589999999999999987
Q ss_pred CccccchhHHHH---HHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCC
Q 022814 108 KYKKKEEEDEET---RQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGF 175 (291)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~ 175 (291)
+.........-. ....-....+...|. .+|.+..+.+..+..++. ..||+++.|...
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~--~~G~i~~~~i~~~~~~g~---------~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFS--QYGRIITSRILVDQVTGV---------SRGVGFIRFDKR 140 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHG--GGSCEEEEEEEECTTTCC---------EEEEEEEEESSH
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHH--hcCCEeEEEEEecCCCCC---------ccceEEEEeCCH
Confidence 654321100000 000001122233333 245677777777765554 457778888653
No 90
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1.2e-17 Score=142.53 Aligned_cols=133 Identities=23% Similarity=0.383 Sum_probs=98.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3457899999999999999999999999999999999999899999999999999887 5899999999999998
Q ss_pred cCCccccchhHHHHHHhhh--------------hhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCC
Q 022814 106 VAKYKKKEEEDEETRQRMR--------------EERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEK 171 (291)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~--------------~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~ 171 (291)
+.................. ....+...|. .+|.+..+.+..+..++. ..||+||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~--~~G~v~~v~i~~~~~~g~---------~~g~afV~ 173 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE--AFGKIKSATLARDPTTGK---------HKGYGFIE 173 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT--TSSCEEEEEEEECTTTCC---------EEEEEEEE
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh--ccCCeeEEEEEecCCCCC---------cCceEEEE
Confidence 8765543322211111111 1233333333 467788888888876655 45677888
Q ss_pred ccCC
Q 022814 172 FEGF 175 (291)
Q Consensus 172 ~~~~ 175 (291)
|...
T Consensus 174 F~~~ 177 (216)
T 2qfj_A 174 YEKA 177 (216)
T ss_dssp ESSH
T ss_pred ecCH
Confidence 8653
No 91
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.2e-17 Score=129.61 Aligned_cols=77 Identities=31% Similarity=0.613 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAK 108 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~ 108 (291)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999998899999999999999887 7899999999999999865
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=124.48 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=66.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------h--cCCceeCCeEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------N--LNGAQILGRTI 101 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~--lng~~i~gr~i 101 (291)
...++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++ . +++..|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34568899999999999999999999999999999998865 7999999999886 3 35788999999
Q ss_pred EEeccCCccc
Q 022814 102 RVDHVAKYKK 111 (291)
Q Consensus 102 ~V~~a~~~~~ 111 (291)
.|.++.+...
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999976543
No 93
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=2.6e-18 Score=140.81 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=97.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999999899999999999999887 689999999999999987
Q ss_pred CccccchhHHH---HHHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCC
Q 022814 108 KYKKKEEEDEE---TRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGF 175 (291)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~ 175 (291)
+.........- .....-....+...|. .+|.+..+.+..+..++. ..||+++.|...
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~--~~G~i~~~~i~~~~~~~~---------~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFG--KYGSIVQKNILRDKLTGR---------PRGVAFVRYNKR 141 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHT--SSSCEEEEEEEECTTTCC---------EEEEEEEEESSH
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhh--cCCcEEEEEEEEcCCCCC---------cceEEEEEECCH
Confidence 65432110000 0000001222333333 356677778877765555 456788888653
No 94
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=5.1e-18 Score=121.30 Aligned_cols=70 Identities=23% Similarity=0.432 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
+|||+|||+.+++++|..+|++||+|..|.|+.++.+|.++|||||+|.+.++ .+++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999899999999999999887 67889999999999865
No 95
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=131.01 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=69.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR 99 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~----~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr 99 (291)
...++.++|||+|||+.+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++ .|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 445678999999999999999876 6999999999988753 68899999999999876 8999999999
Q ss_pred EEEEeccCCcc
Q 022814 100 TIRVDHVAKYK 110 (291)
Q Consensus 100 ~i~V~~a~~~~ 110 (291)
+|.|.++....
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999997654
No 96
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.6e-17 Score=144.47 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G--~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..++|||+|||+.||+++|+++|++|| .|+.|.|+.++.||+++|||||+|.+.++ .||++.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999877 6999999999999999
Q ss_pred cCCc
Q 022814 106 VAKY 109 (291)
Q Consensus 106 a~~~ 109 (291)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8644
No 97
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.2e-18 Score=121.02 Aligned_cols=70 Identities=29% Similarity=0.524 Sum_probs=66.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
++|||+|||+.+++++|+.+|++||+|..|.|+.++.+|.++|||||+|.+.++ .|+ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999887 667 9999999999886
No 98
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=124.10 Aligned_cols=78 Identities=29% Similarity=0.496 Sum_probs=69.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999654 5689999999999887 78999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9997654
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=3.5e-18 Score=126.61 Aligned_cols=77 Identities=32% Similarity=0.643 Sum_probs=68.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCCcc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAKYK 110 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~~~ 110 (291)
++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.+|.+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTHHHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 689999999999999999999999999999999999999999999999999877 799999999999999997654
Q ss_pred cc
Q 022814 111 KK 112 (291)
Q Consensus 111 ~~ 112 (291)
..
T Consensus 82 ~~ 83 (90)
T 2ki2_A 82 SL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 100
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=123.27 Aligned_cols=76 Identities=24% Similarity=0.422 Sum_probs=68.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|+++|++||.| .|+.+ .++.++|||||+|.+.++ .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999987 56666 589999999999999887 699999999999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997654
No 101
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.6e-17 Score=128.53 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE---IVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~---I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
..+.++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999999 89999999985 9999999999999887 78999999999999
Q ss_pred eccC
Q 022814 104 DHVA 107 (291)
Q Consensus 104 ~~a~ 107 (291)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9885
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=126.95 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=65.4
Q ss_pred cCCCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCC--ceeCCeE
Q 022814 30 AKYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNG--AQILGRT 100 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~-~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng--~~i~gr~ 100 (291)
....|+++|||+|||+ .+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++ .||+ ..|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3456889999999999 9999999999999999999999875 5899999999877 4554 5699999
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999997543
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=126.12 Aligned_cols=78 Identities=29% Similarity=0.602 Sum_probs=70.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999985 4599999999999887 69999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998754
No 104
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=123.94 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCc--eeCCeEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGA--QILGRTI 101 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~--~i~gr~i 101 (291)
...+|+.+|||+|||+.+|+++|.++|++||.|..|.|+. ++|||||+|.+.++ .|++. .|.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3457899999999999999999999999999999999985 37899999999887 56665 4889999
Q ss_pred EEeccCCc
Q 022814 102 RVDHVAKY 109 (291)
Q Consensus 102 ~V~~a~~~ 109 (291)
.|.++.+.
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999754
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-18 Score=132.61 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
..+.++|||+|||+.+|+++|.++|++||.|..|.++.+..+|.++|||||+|.+.++ .||+..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4567899999999999999999999999999987777777799999999999999887 79999999999999998
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
.+.
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.2e-17 Score=133.67 Aligned_cols=80 Identities=30% Similarity=0.518 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999999899999999999999887 6899999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 976554
No 107
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.9e-17 Score=127.93 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=68.4
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcC------hh---h-------hcCCce
Q 022814 36 AYVYVGGI----PFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED------QR---N-------NLNGAQ 95 (291)
Q Consensus 36 ~~lfVgnL----~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~------~~---~-------~lng~~ 95 (291)
++|||+|| |+.|++.+|+++|++||+|.+|.++.|+.||.++|||||+|.+ .. + .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999995 21 1 479999
Q ss_pred eCCeEEEEeccCCccc
Q 022814 96 ILGRTIRVDHVAKYKK 111 (291)
Q Consensus 96 i~gr~i~V~~a~~~~~ 111 (291)
|+|+.|.|.+......
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999998766544
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=124.74 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=65.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcC--CceeCCeEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLN--GAQILGRTI 101 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~ln--g~~i~gr~i 101 (291)
...+|.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++ .|+ +..|+|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 44678899999999999999999999999999999998864 7999999999886 454 456999999
Q ss_pred EEeccCCcc
Q 022814 102 RVDHVAKYK 110 (291)
Q Consensus 102 ~V~~a~~~~ 110 (291)
.|.++....
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999997654
No 109
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=122.70 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC-----eE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG-----RT 100 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g-----r~ 100 (291)
....++|||+|||+.+|+++|+++|++||+|..|.|+.+ |||||+|.+.++ .||+..|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999876 899999999876 699999999 99
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++.+..
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999997644
No 110
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=3.1e-17 Score=124.32 Aligned_cols=77 Identities=22% Similarity=0.540 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh---hc-CCceeCCeEEEEeccCC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NL-NGAQILGRTIRVDHVAK 108 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~l-ng~~i~gr~i~V~~a~~ 108 (291)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+. +|.++|||||+|.+.++ ++ ++..|+|+.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 456899999999999999999999999999999999998 99999999999999887 22 78899999999998875
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=2.7e-17 Score=131.70 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=71.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE---IVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTI 101 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~---I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i 101 (291)
....+.++|||+|||+.+|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++ .||+..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34566789999999999999999999999999 89999999986 9999999999999887 789999999999
Q ss_pred EEeccCC
Q 022814 102 RVDHVAK 108 (291)
Q Consensus 102 ~V~~a~~ 108 (291)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998853
No 112
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.1e-17 Score=134.33 Aligned_cols=131 Identities=18% Similarity=0.363 Sum_probs=94.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh----hcCCceeCCeEEEEeccCCc
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN----NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~----~lng~~i~gr~i~V~~a~~~ 109 (291)
++++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ ..++..|+|+.|.|.++.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 57899999999999999999999999999999999999899999999999999887 23467899999999887653
Q ss_pred cccchhHHHH---HHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCC
Q 022814 110 KKKEEEDEET---RQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGF 175 (291)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~ 175 (291)
........-. ....-....+...|. .+|.+..+.+..+..++. ..||+|+.|...
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~--~~G~i~~~~i~~~~~~g~---------~~g~afV~f~~~ 139 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFS--QWGTIIDAQLMLDKDTGQ---------SRGFGFVTYDSA 139 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHH--TTSCCSEEECCCSSSSST---------TSEEEEEEESSH
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHH--hCccEEEEEEEEcCCCCc---------cceEEEEEECCH
Confidence 2110000000 000001223333343 366788888888776665 567888888653
No 113
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=120.29 Aligned_cols=67 Identities=22% Similarity=0.429 Sum_probs=61.4
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe-EE
Q 022814 35 SAYVYVGGIPFDL------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR-TI 101 (291)
Q Consensus 35 ~~~lfVgnL~~~~------te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr-~i 101 (291)
+++|||+|||+.+ |+++|..+|++||+|..|.|+ ..+|.++|||||+|.+.++ .|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999988 3589999999999999887 6999999999 88
Q ss_pred EE
Q 022814 102 RV 103 (291)
Q Consensus 102 ~V 103 (291)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=127.70 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=66.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcC--CceeCCeEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLN--GAQILGRTIR 102 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~ln--g~~i~gr~i~ 102 (291)
..+++++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++ .|+ +..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3567899999999999999999999999999999999976 7999999999887 455 4689999999
Q ss_pred EeccCCcccc
Q 022814 103 VDHVAKYKKK 112 (291)
Q Consensus 103 V~~a~~~~~~ 112 (291)
|.++.+...+
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999766543
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=6.5e-17 Score=118.74 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
.+.-|||+||++.+|+++|+++|.+||+|.+|.|+. ++|||||+|.+.++ .||+..|+|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467799999999999999999999999999999975 58999999999876 899999999999999984
No 116
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-17 Score=129.05 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..++.++|||+|||+.+|+++|.++|++||.|..|.+..+..+|.++|||||+|.+.++ .||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34578999999999999999999999999999544333333389999999999999887 689999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9976654
No 117
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=121.32 Aligned_cols=78 Identities=23% Similarity=0.514 Sum_probs=69.4
Q ss_pred ccccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE
Q 022814 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT 100 (291)
Q Consensus 27 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~ 100 (291)
+.....++.++|||+|||+.+|+++|+.+|++||.|..|.|+.+ +|||||+|.+.++ .||+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 33445678899999999999999999999999999999999854 7899999999887 78999999999
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++.+..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 118
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=121.22 Aligned_cols=78 Identities=26% Similarity=0.464 Sum_probs=70.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|+++|+.|+ .|.|+.++.++.++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4467889999999999999999999999873 67888888899999999999999887 68999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9997654
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=6.7e-18 Score=127.82 Aligned_cols=78 Identities=19% Similarity=0.353 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
..+.++|||+|||+.+|+++|+.+|++||.|.. .++.+..+|.++|||||+|.+.++ .||+..|.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346789999999999999999999999999988 677777789999999999999887 79999999999999999
Q ss_pred CCcc
Q 022814 107 AKYK 110 (291)
Q Consensus 107 ~~~~ 110 (291)
.+..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 120
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=124.90 Aligned_cols=72 Identities=26% Similarity=0.489 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
+..+|||+|||+.+|+++|+++|++| .|..|.|+.++ +|+++|||||+|.+.++ .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 89999999998 49999999999999887 789999999999998775
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=3.8e-17 Score=122.58 Aligned_cols=78 Identities=21% Similarity=0.454 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT 100 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~----~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~ 100 (291)
..+++++|||+|||+.+++++|. .+|++||.|..|.|+. +|.++|||||+|.+.++ .|||..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 35688999999999999999999 9999999999999874 67889999999999887 68999999999
Q ss_pred EEEeccCCccc
Q 022814 101 IRVDHVAKYKK 111 (291)
Q Consensus 101 i~V~~a~~~~~ 111 (291)
|.|.++.+...
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987653
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=116.25 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hc-CCceeCCeEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL-NGAQILGRTIR 102 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~l-ng~~i~gr~i~ 102 (291)
...++.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++ .| ++..|+|++|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34567899999999999999999999999999999999874 7999999999887 57 99999999999
Q ss_pred Eecc
Q 022814 103 VDHV 106 (291)
Q Consensus 103 V~~a 106 (291)
|.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 123
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-17 Score=136.36 Aligned_cols=128 Identities=22% Similarity=0.345 Sum_probs=94.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~ 109 (291)
++|||+|||+.+|+++|.++|++||.|..|.|+.++ ++.++|||||+|.+.++ .|||..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 68899999999999887 78999999999999998665
Q ss_pred cccchhHHHH-----HHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCC
Q 022814 110 KKKEEEDEET-----RQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGF 175 (291)
Q Consensus 110 ~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~ 175 (291)
.......... ....-....+...| ..+|.+..+.+..+..++. ..||+++.|...
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f--~~~G~i~~~~i~~~~~~~~---------~~g~afV~f~~~ 139 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAF--KDFPSYLSGHVMWDMQTGS---------SRGYGFVSFTSQ 139 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHH--TTSTTEEEEEEEECTTTCC---------EEEEEEEEESCH
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHH--hccCCeeEEEEEecCCCCC---------cceEEEEEeCCH
Confidence 4321110000 00000122333333 3467778888888776655 557788888653
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=9.2e-17 Score=124.16 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=66.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
..+...+|||+|||+.+|+++|+++|++|| +|..|.|+. ..++|||||+|.+.++ .|||..|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 899998864 3589999999999887 79999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998643
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=119.21 Aligned_cols=75 Identities=24% Similarity=0.430 Sum_probs=67.7
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC--CeEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL--GRTI 101 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~--gr~i 101 (291)
...++.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++ .||+..|. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34577899999999999999999999999999999999854 7899999999887 69999999 9999
Q ss_pred EEeccCCcc
Q 022814 102 RVDHVAKYK 110 (291)
Q Consensus 102 ~V~~a~~~~ 110 (291)
.|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999997654
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=1.2e-16 Score=123.71 Aligned_cols=78 Identities=22% Similarity=0.418 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.+++++|||+|||+.+|+++|..+|++||.|..|.|+.+ +.++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456889999999999999999999999999999999875 5669999999999887 6999999999999999
Q ss_pred cCCcccc
Q 022814 106 VAKYKKK 112 (291)
Q Consensus 106 a~~~~~~ 112 (291)
+.+....
T Consensus 82 a~~~~~~ 88 (115)
T 3lqv_A 82 YNANRAF 88 (115)
T ss_dssp CCHHHHT
T ss_pred ecCChhh
Confidence 9865443
No 127
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=9.7e-17 Score=134.17 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999999 99999999999999887 6999999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 976543
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=119.88 Aligned_cols=75 Identities=29% Similarity=0.407 Sum_probs=66.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..+..++|||+|||+.+|+++|+.+|++||.|. |.|+. +.++|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445688999999999999999999999999997 66664 4689999999999886 789999999999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997654
No 129
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=117.16 Aligned_cols=72 Identities=24% Similarity=0.531 Sum_probs=66.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4678999999999999999999999999999999997 6899999999887 7999999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976553
No 130
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-17 Score=125.98 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE---IVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIR 102 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~---I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~ 102 (291)
.....++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++ .||+..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3457889999999999999999999999998 89999999986 9999999999999887 7899999999999
Q ss_pred EeccCC
Q 022814 103 VDHVAK 108 (291)
Q Consensus 103 V~~a~~ 108 (291)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998864
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-18 Score=131.83 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEEcChhh------hcCCceeC
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD--------VNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~ 97 (291)
..+.++|||+|||+.+++++|+.+|++||.|.. |.|+.++.+|.++|||||+|.+.++ .||+..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999998 9999998899999999999999887 68999999
Q ss_pred CeEEEEeccCCcc
Q 022814 98 GRTIRVDHVAKYK 110 (291)
Q Consensus 98 gr~i~V~~a~~~~ 110 (291)
|+.|.|.++.+..
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999986543
No 132
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=2.7e-17 Score=132.15 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=68.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
......++|||+|||+.+|+++|+++|++|| |+.|.|+.++. |+++|||||+|.+.++ +||+..|+++.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3445678999999999999999999999999 77999999984 9999999999999887 789999999999998
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
.+.+..
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 886543
No 133
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=8.8e-17 Score=126.97 Aligned_cols=75 Identities=29% Similarity=0.438 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCee--EEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--DVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~--~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
...+.++|||+|||+.+|+++|+++|++| .|+ .|.|+.++. |.++|||||+|.+.++ .+++..|+|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34567899999999999999999999999 677 999999985 9999999999999887 56889999999999
Q ss_pred eccC
Q 022814 104 DHVA 107 (291)
Q Consensus 104 ~~a~ 107 (291)
..+.
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8775
No 134
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=2.3e-16 Score=121.25 Aligned_cols=73 Identities=23% Similarity=0.475 Sum_probs=66.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|..+|++||.|..|.|+ +|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45678999999999999999999999999999999998 7899999999887 689999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9976543
No 135
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=3.3e-16 Score=117.94 Aligned_cols=74 Identities=15% Similarity=0.468 Sum_probs=64.8
Q ss_pred cccCCCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE
Q 022814 28 WHAKYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT 100 (291)
Q Consensus 28 ~~~~~~~~~~lfVgnL~~-~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~ 100 (291)
.....++.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++ .|||..|+|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334567899999999998 99999999999999999999983 7899999999887 69999999999
Q ss_pred EEEeccCCc
Q 022814 101 IRVDHVAKY 109 (291)
Q Consensus 101 i~V~~a~~~ 109 (291)
|.|.++.+.
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998654
No 136
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=116.71 Aligned_cols=74 Identities=22% Similarity=0.388 Sum_probs=66.1
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQC--GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT 100 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~--G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~ 100 (291)
.....+.++|||+|||+.+|+++|+.+|++| |.|..|.++ +|||||+|.+.++ .||+..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999999999 999999875 5799999999887 69999999999
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++.+..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 137
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=120.71 Aligned_cols=75 Identities=23% Similarity=0.498 Sum_probs=68.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..++.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999876 7899999999887 789999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9976543
No 138
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.7e-17 Score=127.19 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=67.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEI----VDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIR 102 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I----~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~ 102 (291)
..+..+|||+|||+.+|+++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++ .+|+..|+++.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999975 689999985 99999999999999887 5699999999999
Q ss_pred EeccC
Q 022814 103 VDHVA 107 (291)
Q Consensus 103 V~~a~ 107 (291)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98775
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=132.12 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE--Eeec---CCCCCcceEEEEEEcChhh------hcCCceeCCeE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVN--LVRD---KGTGKPRGFAFVAYEDQRN------NLNGAQILGRT 100 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~--i~~d---~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~ 100 (291)
..+.++|||+|||+.+|+++|..+|++||.|..|. ++.+ ..+|.++|||||+|.+.++ .|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 56789999999999999999999999999998751 1111 2479999999999999887 69999999999
Q ss_pred EEEeccCCcccc
Q 022814 101 IRVDHVAKYKKK 112 (291)
Q Consensus 101 i~V~~a~~~~~~ 112 (291)
|.|.++.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999776544
No 140
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2e-16 Score=119.69 Aligned_cols=71 Identities=27% Similarity=0.483 Sum_probs=64.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.+..++|||+|||+.+++++|+.+|++||.|..|.|+ .++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 4557899999999999999999999999999999998 358999999999886 7899999999999999
Q ss_pred cCC
Q 022814 106 VAK 108 (291)
Q Consensus 106 a~~ 108 (291)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 141
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=116.64 Aligned_cols=73 Identities=30% Similarity=0.531 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh--hcCCcee--CCeEEEEeccCC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN--NLNGAQI--LGRTIRVDHVAK 108 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~--~lng~~i--~gr~i~V~~a~~ 108 (291)
.++++|||+|||+.+|+++|+.+|++||.|..|.|+.+ ++|||||+|.+.++ +|++..+ .++.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 46799999999999999999999999999999999865 68999999999988 6777544 899999999876
Q ss_pred cc
Q 022814 109 YK 110 (291)
Q Consensus 109 ~~ 110 (291)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=119.48 Aligned_cols=75 Identities=25% Similarity=0.464 Sum_probs=66.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+++++|+.+|++||.|..| ..++.++|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34578999999999999999999999999988766 3478999999999999887 699999999999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=4.2e-16 Score=119.79 Aligned_cols=72 Identities=22% Similarity=0.533 Sum_probs=64.8
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 31 KYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...+.++|||+|||+. +|+++|+.+|++||.|..|.| ++|||||+|.+.++ .||+..|+|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3456689999999999 999999999999999999998 48999999999887 78999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9997543
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=122.84 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=65.1
Q ss_pred cCCCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hc--CCceeCCeE
Q 022814 30 AKYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL--NGAQILGRT 100 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~l--ng~~i~gr~ 100 (291)
...+++++|||+|||+. +|+++|+++|++||.|..|.|+. ++|||||+|.+.++ .| ++..|.|++
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34678899999999998 99999999999999999999974 37999999999876 44 456799999
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++....
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 9999997554
No 145
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=4.7e-16 Score=118.15 Aligned_cols=72 Identities=19% Similarity=0.417 Sum_probs=65.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++ .||+..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567999999999999999999999999999999987 4599999999887 6899999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 976553
No 146
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=114.53 Aligned_cols=73 Identities=25% Similarity=0.436 Sum_probs=65.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|+.+|++||.|..|.|+. +||||+|.+.++ .||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456789999999999999999999999999999999984 399999999877 789999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9976543
No 147
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=114.62 Aligned_cols=73 Identities=26% Similarity=0.537 Sum_probs=65.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|+.+|++||.|..|.|+. +||||+|.+.++ .|||..|+|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999999999999999999999999999984 499999999887 699999999999999
Q ss_pred ccCCccc
Q 022814 105 HVAKYKK 111 (291)
Q Consensus 105 ~a~~~~~ 111 (291)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9976643
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.64 E-value=3.3e-16 Score=127.08 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=68.4
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|..+|++||.|..|.|+.+ ++|||||+|.+.++ .|||..|+|++|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999887 58999999999887 69999999999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998764
No 149
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=5.4e-17 Score=133.61 Aligned_cols=130 Identities=21% Similarity=0.394 Sum_probs=91.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CcceEEEEEEcChhh------hcCCceeC---CeEEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTG--KPRGFAFVAYEDQRN------NLNGAQIL---GRTIR 102 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg--~s~G~aFV~F~~~~~------~lng~~i~---gr~i~ 102 (291)
+.++|||+|||+.+|+++|.++|++||+|..|.|+.++.++ .++|||||+|.+.++ .|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999777 899999999999887 68998776 67888
Q ss_pred EeccCCccccchhHHHHHH----hhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCC
Q 022814 103 VDHVAKYKKKEEEDEETRQ----RMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGF 175 (291)
Q Consensus 103 V~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~ 175 (291)
|.++.+............. ..-....+...|. .+|.+..+.+..+.. +. ..||+|+.|...
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~--~~G~i~~v~~~~~~~-g~---------~~g~afV~f~~~ 146 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFS--SFGQIEECRILRGPD-GL---------SRGCAFVTFTTR 146 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHG--GGSCEEEEEEEECTT-SC---------EEEEEEEEESSH
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHH--hCCCEEEEEEEECCC-CC---------EEEEEEEEECCH
Confidence 8877654332110000000 0001122233332 355677777777642 33 457888888654
No 150
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-15 Score=113.41 Aligned_cols=75 Identities=31% Similarity=0.484 Sum_probs=66.2
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
.....+.++|||+|| .+|+++|+.+|++||.|..|.|. .++|||||+|.+.++ .||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345567899999996 89999999999999999999984 568999999999887 7899999999999
Q ss_pred EeccCCccc
Q 022814 103 VDHVAKYKK 111 (291)
Q Consensus 103 V~~a~~~~~ 111 (291)
|.++.+...
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=117.33 Aligned_cols=76 Identities=22% Similarity=0.258 Sum_probs=67.2
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i-~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
+.....++|||+|||+.+|+++|+.+|++||.|..| .|+.++.+|. |||+|.+.++ .|||..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 334567899999999999999999999999999999 5888875543 9999999887 6999999999999
Q ss_pred EeccCCc
Q 022814 103 VDHVAKY 109 (291)
Q Consensus 103 V~~a~~~ 109 (291)
|.++.+.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999765
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.7e-16 Score=124.80 Aligned_cols=77 Identities=23% Similarity=0.529 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|++|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999887 699999999999999
Q ss_pred ccC
Q 022814 105 HVA 107 (291)
Q Consensus 105 ~a~ 107 (291)
+|.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 153
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=119.86 Aligned_cols=70 Identities=36% Similarity=0.629 Sum_probs=65.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccCCc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~~~ 109 (291)
++|||+|||+.+|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++ .||+..|+|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 78999999999887 68999999999999999765
Q ss_pred c
Q 022814 110 K 110 (291)
Q Consensus 110 ~ 110 (291)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=114.23 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=65.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEecc
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a 106 (291)
....++|||+|||+.+|+++|+.+|++||.|..| +.+..+|. ||||+|.+.++ .||+..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 3456899999999999999999999999999987 66666666 99999999887 89999999999999988
Q ss_pred CCcc
Q 022814 107 AKYK 110 (291)
Q Consensus 107 ~~~~ 110 (291)
.+..
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 155
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.1e-16 Score=117.68 Aligned_cols=72 Identities=15% Similarity=0.511 Sum_probs=64.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 31 KYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~-~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
..++.++|||+|||+ .+|+++|..+|++||.|..|.|+ +|||||+|.+.++ .|||..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 357899999999999 99999999999999999999984 7899999999887 69999999999999
Q ss_pred eccCCcc
Q 022814 104 DHVAKYK 110 (291)
Q Consensus 104 ~~a~~~~ 110 (291)
.++.+..
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9986554
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.6e-15 Score=127.17 Aligned_cols=80 Identities=30% Similarity=0.504 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++ .+++..|+|+.|.|.++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 456899999999999999999999999999999999999899999999999999887 568999999999999997
Q ss_pred Ccccc
Q 022814 108 KYKKK 112 (291)
Q Consensus 108 ~~~~~ 112 (291)
+....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 66543
No 157
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=120.47 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
...++|||+|||+.+|+++|+.+|++||.|..|.|+. ++|||||+|.+.++ .|||..|+|++|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999874 57899999999887 79999999999999998
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 653
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.7e-15 Score=124.48 Aligned_cols=75 Identities=28% Similarity=0.561 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ +|||..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 447899999999999999999999999999999999998899999999999999887 79999999999999987
Q ss_pred C
Q 022814 107 A 107 (291)
Q Consensus 107 ~ 107 (291)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=3e-15 Score=125.81 Aligned_cols=79 Identities=28% Similarity=0.527 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 567999999999999999999999999999999999998899999999999999887 69999999999999999
Q ss_pred CCccc
Q 022814 107 AKYKK 111 (291)
Q Consensus 107 ~~~~~ 111 (291)
.+..+
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77653
No 160
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-16 Score=115.49 Aligned_cols=73 Identities=27% Similarity=0.450 Sum_probs=63.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEEcChhh------hcCC-ceeCCeEEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNG-AQILGRTIRV 103 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~-I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng-~~i~gr~i~V 103 (291)
..+.++|||+|||+.+|+++|+.+|++||. |..+.|. ++|||||+|.+.++ .||| ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 457889999999999999999999999999 6666553 47999999999886 7999 9999999999
Q ss_pred eccCCccc
Q 022814 104 DHVAKYKK 111 (291)
Q Consensus 104 ~~a~~~~~ 111 (291)
.++.+...
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99976543
No 161
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=118.41 Aligned_cols=74 Identities=22% Similarity=0.439 Sum_probs=64.7
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee-----C
Q 022814 31 KYKDSAYVYV--GGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI-----L 97 (291)
Q Consensus 31 ~~~~~~~lfV--gnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i-----~ 97 (291)
...|..+||| |||++.+|+++|+++|++||+|..|.|+.+ +|||||+|.+.++ +|||..| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3467889999 779999999999999999999999988642 7999999999876 8999998 6
Q ss_pred CeEEEEeccCCcc
Q 022814 98 GRTIRVDHVAKYK 110 (291)
Q Consensus 98 gr~i~V~~a~~~~ 110 (291)
+.+|.|.++....
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999987543
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=2.2e-15 Score=128.33 Aligned_cols=79 Identities=29% Similarity=0.538 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 466899999999999999999999999999999999999899999999999999887 69999999999999999
Q ss_pred CCccc
Q 022814 107 AKYKK 111 (291)
Q Consensus 107 ~~~~~ 111 (291)
.+...
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 76643
No 163
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=8.2e-16 Score=136.98 Aligned_cols=133 Identities=17% Similarity=0.268 Sum_probs=99.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
.++.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++ .|+|..|+|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4577899999999999999999999999999999999999999999999999999887 7899999999999999
Q ss_pred cCCccccchhHHHHHH------hh-hhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 106 VAKYKKKEEEDEETRQ------RM-REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 106 a~~~~~~~~~~~~~~~------~~-~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
+.+............- .. .....+...|. .+|.+..+.+..+. ++. ..||+||.|....
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~--~~G~i~~v~i~~~~-~g~---------~~g~afV~f~~~~ 237 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALS--AVHSPTFCQLACGQ-DGQ---------LKGFAVLEYETAE 237 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTC--SSSCCSEEEEEECS-SCC---------EEEEEEEECSSHH
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhh--CCCCeEEEEEEECC-CCC---------cccEEEEEeCCHH
Confidence 9765533211000000 00 01223334443 36778888888765 333 4578899987643
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=8e-16 Score=125.84 Aligned_cols=77 Identities=30% Similarity=0.545 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccC
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~ 107 (291)
.+..+|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++ .|++..|+|++|.|.++.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 356799999999999999999999999999999999998899999999999999887 789999999999999987
Q ss_pred Cc
Q 022814 108 KY 109 (291)
Q Consensus 108 ~~ 109 (291)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=116.37 Aligned_cols=76 Identities=24% Similarity=0.466 Sum_probs=63.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEEcChhh---hcCC-ceeCCeEEEEe
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRN---NLNG-AQILGRTIRVD 104 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~t---g~s~G~aFV~F~~~~~---~lng-~~i~gr~i~V~ 104 (291)
..+.++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++ +|.. ..|+|+.|.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 35678999999999999999999999999999 888888877 7999999999999887 2221 35788888887
Q ss_pred ccCC
Q 022814 105 HVAK 108 (291)
Q Consensus 105 ~a~~ 108 (291)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6543
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=2.1e-15 Score=111.27 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
...++|||+|||+.+++++|+++|++| .|..|.|. .++|||||+|.+.++ .|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999885 578999999999887 69999999999999998
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=1.1e-15 Score=118.74 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=56.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...++|||+|||+.+|+++|+++|++||+|..|.|+.+ |||||+|.+.++ +||+..|+|+.|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 35689999999999999999999999999999999876 899999999887 69999999998433
No 168
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=6.1e-16 Score=136.73 Aligned_cols=126 Identities=22% Similarity=0.395 Sum_probs=91.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
....+.++|||+|||+.+|+++|..+|++||.|..|.|+.+ +|||||+|.+.++ .|||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34566789999999999999999999999999999999654 7999999999887 69999999999999
Q ss_pred eccCCccccchhHHHHHHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 104 DHVAKYKKKEEEDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
.++.+....--..... ......+...|. .+|.+..+.+..+. ++. ..|||||.|....
T Consensus 91 ~~a~~~~~l~v~nl~~---~~t~~~l~~~F~--~~G~i~~v~i~~~~-~g~---------~~g~afV~f~~~~ 148 (261)
T 3sde_A 91 RFATHGAALTVKNLSP---VVSNELLEQAFS--QFGPVEKAVVVVDD-RGR---------ATGKGFVEFAAKP 148 (261)
T ss_dssp EECCCSSEEEEESCCT---TCCHHHHHHHHG--GGSCEEEEEEEEET-TSC---------EEEEEEEEESSHH
T ss_pred eecccCCcccccCCCC---CCCHHHHHHHHH--hcCCeEEEEeeeCC-CCC---------cCcEEEEEeCCHH
Confidence 9987643211000000 001122333333 35667888888873 444 4578888886644
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=4e-15 Score=127.49 Aligned_cols=74 Identities=20% Similarity=0.446 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
...+|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++ +|||..|+|++|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 46799999999999999999999999999999999985 5589999999999887 799999999999999987
Q ss_pred Cc
Q 022814 108 KY 109 (291)
Q Consensus 108 ~~ 109 (291)
+.
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 170
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=7.8e-15 Score=124.23 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=67.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEeccCCc
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDHVAKY 109 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~a~~~ 109 (291)
.++|||+|||+.+|+++|+++|++||+|..|.|+.+. +|.++|||||+|.+.++ .+.+..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4799999999999999999999999999999999987 69999999999999887 45567999999999987654
Q ss_pred c
Q 022814 110 K 110 (291)
Q Consensus 110 ~ 110 (291)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 171
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=110.08 Aligned_cols=69 Identities=20% Similarity=0.409 Sum_probs=60.8
Q ss_pred CCCCCE-EEEcCCCCCCCHHH----HHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe
Q 022814 32 YKDSAY-VYVGGIPFDLTEGD----LLAVFAQC-GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR 99 (291)
Q Consensus 32 ~~~~~~-lfVgnL~~~~te~~----L~~~F~~~-G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr 99 (291)
.+|+.| |||+|||+.+++++ |..+|++| |+|.+| || |||||+|.+.++ .|||..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 456777 99999999999988 55899999 599988 44 999999999987 8999999999
Q ss_pred EEEEeccCCcc
Q 022814 100 TIRVDHVAKYK 110 (291)
Q Consensus 100 ~i~V~~a~~~~ 110 (291)
+|.|.+|....
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99999997654
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=4.6e-15 Score=116.30 Aligned_cols=75 Identities=31% Similarity=0.484 Sum_probs=65.1
Q ss_pred ccCCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
.....+.++|||+|| .+|+++|+++|++||.|..|.|+ .++|||||+|.+.++ .|||..|+|+.|.
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999996 69999999999999999999986 568999999999886 7899999999999
Q ss_pred EeccCCccc
Q 022814 103 VDHVAKYKK 111 (291)
Q Consensus 103 V~~a~~~~~ 111 (291)
|.++.+...
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999976643
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=9.5e-15 Score=119.38 Aligned_cols=75 Identities=35% Similarity=0.599 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC--eEEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG--RTIRV 103 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g--r~i~V 103 (291)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++ .|||..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999999899999999999999887 699999988 99999
Q ss_pred ecc
Q 022814 104 DHV 106 (291)
Q Consensus 104 ~~a 106 (291)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=8e-15 Score=125.26 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 33 KDSAYVYVGGIP-FDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 33 ~~~~~lfVgnL~-~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
+++++|||+||| +.+|+++|.++|++||.|..|.|+.+. +|||||+|.+.++ .|||..|.|++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 468899999999 799999999999999999999998763 7999999999887 7999999999999999
Q ss_pred cCC
Q 022814 106 VAK 108 (291)
Q Consensus 106 a~~ 108 (291)
+..
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=3.3e-16 Score=129.39 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=69.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEec
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~ 105 (291)
...+.++|||+|||+.+|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++ +|||..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4567899999999999999999999999998866 345555689999999999999987 8999999999999999
Q ss_pred cCCccc
Q 022814 106 VAKYKK 111 (291)
Q Consensus 106 a~~~~~ 111 (291)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 976543
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.1e-14 Score=106.75 Aligned_cols=67 Identities=25% Similarity=0.636 Sum_probs=61.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCcee
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQC----G-------EIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQI 96 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~----G-------~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i 96 (291)
.+.++|||+|||+.+++++|+++|++| | .|..|.|+.+ +|||||+|.+.++ .|||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 457899999999999999999999999 8 9999998865 7999999999887 8999999
Q ss_pred CCeEEEEec
Q 022814 97 LGRTIRVDH 105 (291)
Q Consensus 97 ~gr~i~V~~ 105 (291)
+|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999964
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=6.3e-15 Score=121.13 Aligned_cols=74 Identities=24% Similarity=0.452 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC---CeEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL---GRTIR 102 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~---gr~i~ 102 (291)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++ +|||..|. +++|.
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999997 69999999999999887 88998776 49999
Q ss_pred Eecc
Q 022814 103 VDHV 106 (291)
Q Consensus 103 V~~a 106 (291)
|.+|
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 178
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1e-14 Score=119.69 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=63.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCC--eEEEEecc
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILG--RTIRVDHV 106 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~g--r~i~V~~a 106 (291)
..+|||+||++.+|+++|..+|++||.|..|.|+.. .++|||||+|.+.++ .|||..|.+ +.|.|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457899999999999999999999999999998643 357999999999876 899999965 99999999
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
.+.
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 765
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.5e-14 Score=114.41 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEEcChhh------hcCCceeCC--eEEEEe
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGF-AFVAYEDQRN------NLNGAQILG--RTIRVD 104 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~-aFV~F~~~~~------~lng~~i~g--r~i~V~ 104 (291)
+-..|||+||++.+|+++|..+|++||.|..|.|+... +|| |||+|.+.++ +|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 44567899999999999999999999999999887643 688 9999999876 899999998 999999
Q ss_pred ccCCcc
Q 022814 105 HVAKYK 110 (291)
Q Consensus 105 ~a~~~~ 110 (291)
++.+..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 997543
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.8e-14 Score=112.15 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=61.6
Q ss_pred CCCCE--EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEEcChhh------hcCCceeCC--eEE
Q 022814 33 KDSAY--VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGF-AFVAYEDQRN------NLNGAQILG--RTI 101 (291)
Q Consensus 33 ~~~~~--lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~-aFV~F~~~~~------~lng~~i~g--r~i 101 (291)
+|+++ |||+||++.+|+++|..+|++||.|..|.|+. + .|| |||+|.+.++ +|||..|.| +.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 45554 57999999999999999999999999999865 2 286 9999999875 899999988 699
Q ss_pred EEeccCCcc
Q 022814 102 RVDHVAKYK 110 (291)
Q Consensus 102 ~V~~a~~~~ 110 (291)
.|.+|.+..
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999997553
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=1.9e-14 Score=117.19 Aligned_cols=74 Identities=32% Similarity=0.595 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE--EEEe
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT--IRVD 104 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~--i~V~ 104 (291)
.+..+|||+|||+.+++++|..+|++||.|..|.|+.+..+|.++|||||+|.+.++ .|||..|+|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 457899999999999999999999999999999999999899999999999999887 69999999965 8887
Q ss_pred cc
Q 022814 105 HV 106 (291)
Q Consensus 105 ~a 106 (291)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=5.1e-14 Score=107.61 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEEcChhh------hcCCceeCCe
Q 022814 32 YKDSAYVYVGGIPF-----DLTEGDLLAVFAQCGEIVDVNLVRDKGT-GKPRGFAFVAYEDQRN------NLNGAQILGR 99 (291)
Q Consensus 32 ~~~~~~lfVgnL~~-----~~te~~L~~~F~~~G~I~~i~i~~d~~t-g~s~G~aFV~F~~~~~------~lng~~i~gr 99 (291)
..++.+|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++ +|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46789999999963 2478999999999999999999998654 6899999999999886 8999999999
Q ss_pred EEEEeccC
Q 022814 100 TIRVDHVA 107 (291)
Q Consensus 100 ~i~V~~a~ 107 (291)
.|.|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999985
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=3e-14 Score=126.66 Aligned_cols=77 Identities=22% Similarity=0.463 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRT 100 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~----~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~ 100 (291)
...++++|||+|||+.+|+++|+ ++|++||.|..|.|+. +|.++|||||+|.+.++ .|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45779999999999999999966 8999999999999886 78899999999999887 88999999999
Q ss_pred EEEeccCCcc
Q 022814 101 IRVDHVAKYK 110 (291)
Q Consensus 101 i~V~~a~~~~ 110 (291)
|.|.++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999986544
No 184
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=1.9e-14 Score=118.10 Aligned_cols=127 Identities=15% Similarity=0.337 Sum_probs=89.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCcee
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQC----G-------EIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQI 96 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~----G-------~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i 96 (291)
.+.++|||+|||+.+|+++|.++|++| | .|..+.+. .++|||||+|.+.++ .||+..|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 357899999999999999999999999 6 67777665 348999999999887 8899999
Q ss_pred CCeEEEEeccCCccccchhHHHH---HHhhhhhhccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCcc
Q 022814 97 LGRTIRVDHVAKYKKKEEEDEET---RQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFE 173 (291)
Q Consensus 97 ~gr~i~V~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~ 173 (291)
.|+.|.|.++...........-. ....-....+...|. .+|.+..+.+..+..++. ..||+++.|.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~--~~G~v~~v~i~~~~~~g~---------~~g~afV~f~ 144 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLT--SFGPLKAFNLVKDSATGL---------SKGYAFCEYV 144 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHH--TTSCEEEEEEEECTTTCS---------EEEEEEEEES
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHH--hcCCceEEEEEecCCCCC---------cceEEEEEeC
Confidence 99999999886553321100000 000001222333333 356678888888776655 4578888886
Q ss_pred CCC
Q 022814 174 GFS 176 (291)
Q Consensus 174 ~~~ 176 (291)
...
T Consensus 145 ~~~ 147 (172)
T 2g4b_A 145 DIN 147 (172)
T ss_dssp STT
T ss_pred CHH
Confidence 543
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=6.9e-15 Score=131.48 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=87.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEe
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVD 104 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~ 104 (291)
..+.++|||+|||+.+++++|.++|++|| .|..|.|+.+.. |.++|||||+|.+.++ .|||..|.|+.|.|.
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45789999999999999999999999999 999999999874 8899999999999887 599999999999999
Q ss_pred ccCCccccchhHHHHHH----------hh-hhhhccccccccCCCCCCCceeEeecCC-CCCCCCCCCCCCCCCCCCCCc
Q 022814 105 HVAKYKKKEEEDEETRQ----------RM-REERGVCRAFQRGECTRGDGCKFSHNEQ-RAANTGGGPQDRSSRWGHEKF 172 (291)
Q Consensus 105 ~a~~~~~~~~~~~~~~~----------~~-~~~~~~~~~f~~~~~g~~~~~~~~~d~~-~~~~~g~g~~~~~~g~g~~~~ 172 (291)
++.+............. .. -....+...|. .+|.+..+.+..+.. ++. ..||+||.|
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~--~~G~v~~v~i~~~~~~tg~---------~~g~afV~F 261 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE--GFGSIEKINIPAGQKEHSF---------NNCCAFMVF 261 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG--GGSCEEEEECCSCCC---C---------CCEEEEEEE
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh--ccCCeeEEEEEecCCcCCC---------CceEEEEEe
Confidence 98765433211000000 00 11122333333 256677777766554 233 567889988
Q ss_pred cCC
Q 022814 173 EGF 175 (291)
Q Consensus 173 ~~~ 175 (291)
...
T Consensus 262 ~~~ 264 (292)
T 2ghp_A 262 ENK 264 (292)
T ss_dssp SSH
T ss_pred CCH
Confidence 653
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.49 E-value=7.3e-14 Score=124.29 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCC-CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEE
Q 022814 31 KYKDSAYVYVGGIPFDL-TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~-te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V 103 (291)
...+.++|||+|||+.+ |+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++ .|||..|+|++|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34578899999999994 999999999999999999999987 89999999999999887 79999999999999
Q ss_pred eccCCccccc
Q 022814 104 DHVAKYKKKE 113 (291)
Q Consensus 104 ~~a~~~~~~~ 113 (291)
.++.+.....
T Consensus 259 ~~a~~~~~~~ 268 (284)
T 3smz_A 259 SFCAPGPPGR 268 (284)
T ss_dssp EECCSSSCHH
T ss_pred EEecCCCccc
Confidence 9998776543
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=6.4e-14 Score=125.17 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEEcChhh-----hcCCceeCCeEEEEe
Q 022814 32 YKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKG-TGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVD 104 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~i~i~~d~~-tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~ 104 (291)
..+.++|||+|||+. +|+++|.++|++||.|..|.|+.+.. ||.++|||||+|.+.++ .|||..|+|+.|.|.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVS 286 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEE
Confidence 456789999999999 99999999999999999999999876 69999999999999887 799999999999999
Q ss_pred ccCCc
Q 022814 105 HVAKY 109 (291)
Q Consensus 105 ~a~~~ 109 (291)
++.+.
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99754
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=5.3e-14 Score=121.78 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=68.5
Q ss_pred cCCCCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 30 AKYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~-~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
...+++++|||+|||+ .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++ .|||..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3457789999999999 99999999999999999999999876 8899999999887 6999999999999
Q ss_pred EeccCCc
Q 022814 103 VDHVAKY 109 (291)
Q Consensus 103 V~~a~~~ 109 (291)
|.++...
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9998754
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=4.2e-14 Score=116.64 Aligned_cols=73 Identities=25% Similarity=0.467 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEec
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDH 105 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~ 105 (291)
..+.++|||+|||+.+|+++|.++|++||.|..| ..+|.++|||||+|.+.++ .|||..|+|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999988766 4589999999999999887 6999999999999999
Q ss_pred cCCc
Q 022814 106 VAKY 109 (291)
Q Consensus 106 a~~~ 109 (291)
+.+.
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8754
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=3.3e-14 Score=123.87 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCcee
Q 022814 32 YKDSAYVYVGGIPFDL---------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQI 96 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~---------te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i 96 (291)
..+.++||||||++.+ ++++|..+|++||+|..|.|+.+ +|||||+|.+.++ +|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 79999999999999999999853 7999999999876 8999999
Q ss_pred ------------CCeEEEEeccCCccc
Q 022814 97 ------------LGRTIRVDHVAKYKK 111 (291)
Q Consensus 97 ------------~gr~i~V~~a~~~~~ 111 (291)
.|+.|.|.+|.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=1.5e-14 Score=121.51 Aligned_cols=70 Identities=24% Similarity=0.611 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQC----G-------EIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQIL 97 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~----G-------~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~ 97 (291)
..++|||+|||+.+|+++|.++|++| | .|..+.+ +.++|||||+|.+.++ .|||..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 47899999999999999999999999 4 5555554 4568999999999887 78999999
Q ss_pred CeEEEEeccCCc
Q 022814 98 GRTIRVDHVAKY 109 (291)
Q Consensus 98 gr~i~V~~a~~~ 109 (291)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999998654
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.7e-13 Score=103.70 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=65.1
Q ss_pred ccCCCCCCEEEEcCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hc
Q 022814 29 HAKYKDSAYVYVGGIPFDLT-----------EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL 91 (291)
Q Consensus 29 ~~~~~~~~~lfVgnL~~~~t-----------e~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~l 91 (291)
.....++++|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++ .|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34567899999999954432 5899999999999999955 443 389999999999886 89
Q ss_pred CCceeCCeEEEEeccCCcc
Q 022814 92 NGAQILGRTIRVDHVAKYK 110 (291)
Q Consensus 92 ng~~i~gr~i~V~~a~~~~ 110 (291)
||..|+|++|.|.++.+..
T Consensus 85 ng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TTCEETTEECEEEECCSCC
T ss_pred CCCEECCcEEEEEEeCCCC
Confidence 9999999999999987643
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=3.3e-13 Score=119.89 Aligned_cols=72 Identities=19% Similarity=0.382 Sum_probs=65.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeEEEE
Q 022814 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRTIRV 103 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~i~V 103 (291)
..++.++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|||||+|.+.++ .|||..|+ |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999999664 6899999999887 79999999 999999
Q ss_pred eccC
Q 022814 104 DHVA 107 (291)
Q Consensus 104 ~~a~ 107 (291)
.|+.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9974
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=1.4e-13 Score=117.61 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCe--eEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe----
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEI--VDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR---- 99 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I--~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr---- 99 (291)
.+|.++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +.++|||||+|.+.++ .|||..|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3678899999999999999999999999999 899998875 6677999999999876 8999999886
Q ss_pred EEEEecc
Q 022814 100 TIRVDHV 106 (291)
Q Consensus 100 ~i~V~~a 106 (291)
++.|+++
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 6777654
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=1.7e-13 Score=115.41 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEEEecc
Q 022814 34 DSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHV 106 (291)
Q Consensus 34 ~~~~lfVgnL~~-~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a 106 (291)
.+++|||+|||+ .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++ .|||..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999999875 7899999999887 69999999999999998
Q ss_pred CCc
Q 022814 107 AKY 109 (291)
Q Consensus 107 ~~~ 109 (291)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=2.9e-13 Score=113.94 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=66.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeEEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRTIRV 103 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~i~V 103 (291)
.++.++|||+|||+.+++++|.++|++|| .|..|.|+.+. +|||||+|.+.++ .|||..|+ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 46789999999999999999999999999 99999997643 7999999999887 69999999 999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998653
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.40 E-value=7.8e-13 Score=114.37 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC-CeEEEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL-GRTIRV 103 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G-~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~-gr~i~V 103 (291)
.++.++|||+|||+.+++++|.++|++|| .|..|.|+.. .+|||||+|.+.++ .|||..|+ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 46789999999999999999999999999 9999999653 37899999999887 69999999 999999
Q ss_pred eccCCc
Q 022814 104 DHVAKY 109 (291)
Q Consensus 104 ~~a~~~ 109 (291)
.++.+.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 998753
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=6.2e-13 Score=117.32 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hc-CCceeC---CeEE
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NL-NGAQIL---GRTI 101 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~l-ng~~i~---gr~i 101 (291)
..+..+|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++ .| ++..+. +++|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 3567899999999999999999999999999999999995 99999999999999887 66 555655 9999
Q ss_pred EEeccCCcc
Q 022814 102 RVDHVAKYK 110 (291)
Q Consensus 102 ~V~~a~~~~ 110 (291)
.|.++.+..
T Consensus 172 ~v~~~~~~~ 180 (261)
T 3sde_A 172 IVEPMEQFD 180 (261)
T ss_dssp EEEECCCEE
T ss_pred EEeeccccC
Confidence 999987543
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2.4e-13 Score=103.62 Aligned_cols=68 Identities=15% Similarity=0.336 Sum_probs=59.0
Q ss_pred EEEcCCCCCCCHHHHHHHH------------hcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCe
Q 022814 38 VYVGGIPFDLTEGDLLAVF------------AQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGR 99 (291)
Q Consensus 38 lfVgnL~~~~te~~L~~~F------------~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr 99 (291)
.++.+||+.+++++|.++| ++||+|..|.|+.+. ++.++|||||+|.+.++ +|||..|+|+
T Consensus 18 ~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 18 QSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 3477888888888888777 999999999999887 58999999999999886 7999999999
Q ss_pred EEEEecc
Q 022814 100 TIRVDHV 106 (291)
Q Consensus 100 ~i~V~~a 106 (291)
+|.|.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999886
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.7e-12 Score=99.02 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCCEEEEcCC--CCCC--------CHHHHHHHHhcCCCeeEEEEeecCCC--CCcceEEEEEEcChhh------hcCCc
Q 022814 33 KDSAYVYVGGI--PFDL--------TEGDLLAVFAQCGEIVDVNLVRDKGT--GKPRGFAFVAYEDQRN------NLNGA 94 (291)
Q Consensus 33 ~~~~~lfVgnL--~~~~--------te~~L~~~F~~~G~I~~i~i~~d~~t--g~s~G~aFV~F~~~~~------~lng~ 94 (291)
.|+.+|+|.|| |..+ .+++|+++|++||+|.+|.|+.+..+ +.++|||||+|.+.++ +|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 3233 24799999999999999999998754 4789999999999886 89999
Q ss_pred eeCCeEEEEeccC
Q 022814 95 QILGRTIRVDHVA 107 (291)
Q Consensus 95 ~i~gr~i~V~~a~ 107 (291)
.|+|+.|.|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999875
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=2.3e-12 Score=100.43 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCC--C---CCHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEEcChhh------hcCCceeC
Q 022814 33 KDSAYVYVGGIPF--D---LTEGDLLAVFAQCGEIVDVNLVRDKG----TGKPRGFAFVAYEDQRN------NLNGAQIL 97 (291)
Q Consensus 33 ~~~~~lfVgnL~~--~---~te~~L~~~F~~~G~I~~i~i~~d~~----tg~s~G~aFV~F~~~~~------~lng~~i~ 97 (291)
+|+++|+|.||-. . -.+++|++.|++||+|..|.|+.+.. ++.++|||||+|.+.++ +|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999942 1 23689999999999999999998864 46788999999999886 89999999
Q ss_pred CeEEEEeccC
Q 022814 98 GRTIRVDHVA 107 (291)
Q Consensus 98 gr~i~V~~a~ 107 (291)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999875
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=5.2e-12 Score=115.54 Aligned_cols=73 Identities=21% Similarity=0.444 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEcC--CCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeC---C
Q 022814 30 AKYKDSAYVYVGG--IPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQIL---G 98 (291)
Q Consensus 30 ~~~~~~~~lfVgn--L~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~---g 98 (291)
....|+.+||||| |++.+|+++|+++|++||+|..|.|+. ++|||||+|.+.++ +|||..|. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3467899999999 578999999999999999999987754 47999999999876 89999883 4
Q ss_pred e--EEEEeccCC
Q 022814 99 R--TIRVDHVAK 108 (291)
Q Consensus 99 r--~i~V~~a~~ 108 (291)
+ .|.|.++..
T Consensus 87 ~~~~ly~~~~~~ 98 (345)
T 3tht_A 87 QKITLYLNFVEK 98 (345)
T ss_dssp CEEECEEEECSS
T ss_pred CceEEEEEEeec
Confidence 4 678887753
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=91.38 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh---hc-CCceeCCeEEEEeccCCccc
Q 022814 45 FDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN---NL-NGAQILGRTIRVDHVAKYKK 111 (291)
Q Consensus 45 ~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~---~l-ng~~i~gr~i~V~~a~~~~~ 111 (291)
..+++++|+++|++||+|..|.|+ +.++|||||+|.+.++ ++ .+..+.+++|.|.++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCCC
Confidence 568999999999999999999998 4679999999999887 22 24456799999999876543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.08 E-value=3.2e-10 Score=87.62 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=59.8
Q ss_pred CCCCCEEEEcCCCCCCC----------HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCce
Q 022814 32 YKDSAYVYVGGIPFDLT----------EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQ 95 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~t----------e~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~ 95 (291)
..|+.+|.|.||-.... +++|++.|++||.|..|.|+.+. ++|||||+|.+.++ +|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35677888888843221 35889999999999999997663 58999999999876 899999
Q ss_pred eCCeEEEEeccC
Q 022814 96 ILGRTIRVDHVA 107 (291)
Q Consensus 96 i~gr~i~V~~a~ 107 (291)
|+|+.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.8e-10 Score=88.58 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=61.5
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcC-hhh------hc--CCceeCCeE
Q 022814 31 KYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED-QRN------NL--NGAQILGRT 100 (291)
Q Consensus 31 ~~~~~~~lfVgnL~~~-~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~-~~~------~l--ng~~i~gr~ 100 (291)
..++.+.|||+||++. ++.++|+++|++||+|.+|.|+.+.. .|||.|.+ ..+ +| ++..|++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4688999999999999 99999999999999999999998864 59999999 433 66 478899988
Q ss_pred EEEeccC
Q 022814 101 IRVDHVA 107 (291)
Q Consensus 101 i~V~~a~ 107 (291)
+.|....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-09 Score=80.12 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=60.1
Q ss_pred CCCCCEEEEcCCC----CCCCH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCC
Q 022814 32 YKDSAYVYVGGIP----FDLTE----GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILG 98 (291)
Q Consensus 32 ~~~~~~lfVgnL~----~~~te----~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~g 98 (291)
.||..||+|.-++ .++-. .+|...|++||+|..++|+.+. +||+|.+.++ .|||+.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCC
Confidence 4788899997776 23434 6788999999999999999874 8999999877 899999999
Q ss_pred eEEEEeccCCcc
Q 022814 99 RTIRVDHVAKYK 110 (291)
Q Consensus 99 r~i~V~~a~~~~ 110 (291)
+.|+|+++.+..
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999987654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=9.4e-09 Score=75.76 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEcCCCCC-----CCH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCce
Q 022814 30 AKYKDSAYVYVGGIPFD-----LTE----GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQ 95 (291)
Q Consensus 30 ~~~~~~~~lfVgnL~~~-----~te----~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~ 95 (291)
..-||..||+|.-++.. +-. .+|...|++||+|..++|+.+. +||+|.+.++ .|||+.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~ 81 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMK 81 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCee
Confidence 45688999999888743 323 5688999999999999999885 9999998877 899999
Q ss_pred eCCeEEEEeccC
Q 022814 96 ILGRTIRVDHVA 107 (291)
Q Consensus 96 i~gr~i~V~~a~ 107 (291)
|+|+.|+|.+-.
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.49 E-value=1.8e-07 Score=80.05 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEeecC----CCCCcceEEEEEEcChhh------hcCCceeCCeEEEEeccC
Q 022814 46 DLTEGDLLAVFAQCGEIVDVNLVRDK----GTGKPRGFAFVAYEDQRN------NLNGAQILGRTIRVDHVA 107 (291)
Q Consensus 46 ~~te~~L~~~F~~~G~I~~i~i~~d~----~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~V~~a~ 107 (291)
.-.+++|.+.|++||.|..|.|+.+. .++.++||+||+|.+.++ .|||..++|+.|.|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34568999999999999999998554 355899999999999876 899999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.1e-05 Score=60.71 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQC-----GEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTIR 102 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~-----G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i~ 102 (291)
..++|-|-|||-.+++..|..+++++ |.|+.|.|+.|. |-|+|+|.+... +|+|.+|+|+.|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46788888999999999999999999 999999999884 689999999876 8999999999999
Q ss_pred Eecc
Q 022814 103 VDHV 106 (291)
Q Consensus 103 V~~a 106 (291)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9755
No 210
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.84 E-value=9.4e-06 Score=76.59 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=25.0
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEEee----cC-CCCCcceEE--EEEEcChh
Q 022814 42 GIPFDLTEGDLLAVFAQCGEIVDVNLVR----DK-GTGKPRGFA--FVAYEDQR 88 (291)
Q Consensus 42 nL~~~~te~~L~~~F~~~G~I~~i~i~~----d~-~tg~s~G~a--FV~F~~~~ 88 (291)
.||++ |..+|.++|+|..|..+. +. .+....|++ |++|....
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~ 52 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPR 52 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcc
Confidence 45654 778999999998874332 22 122333444 77776543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.00096 Score=49.79 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCCCEEEEcCCCCCC-C----HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh------hcCCceeCCeEE
Q 022814 33 KDSAYVYVGGIPFDL-T----EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN------NLNGAQILGRTI 101 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~-t----e~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~------~lng~~i~gr~i 101 (291)
.-+++|+|+||+..+ + .+.++.+|..|+++....+.... .=..|.|.++++ .|++..+.|..|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346889999998854 3 25778999999998877666543 356899999887 899999999999
Q ss_pred EEeccCCc
Q 022814 102 RVDHVAKY 109 (291)
Q Consensus 102 ~V~~a~~~ 109 (291)
+|-++++.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999854
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.91 E-value=0.0036 Score=45.73 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=50.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEEcChhh------hcCCceeCC
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK--PRGFAFVAYEDQRN------NLNGAQILG 98 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~--s~G~aFV~F~~~~~------~lng~~i~g 98 (291)
++|.|.+||+.+||+++.+.++....+.....+..+.+.+ ...-|||.|.+.++ .++|+.+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999998887776665544433 34679999999887 788877643
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.0043 Score=46.12 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc-----CCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEE
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQ-----CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRV 103 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~-----~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V 103 (291)
-..+|.|-|||+.+.++.|+.+|+. -|+|..|.... +-|+|+|.+... +...+.|.+.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4678999999999999999999986 26888886643 579999999887 33468888888888
Q ss_pred ecc
Q 022814 104 DHV 106 (291)
Q Consensus 104 ~~a 106 (291)
...
T Consensus 79 ~P~ 81 (104)
T 2dhx_A 79 RPA 81 (104)
T ss_dssp EEC
T ss_pred EcC
Confidence 643
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.002 Score=47.57 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=40.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.+.|+| .+|+.+...+|..+|++|| -..|.++-|. -|||.|.+++.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~ 51 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQ 51 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHH
Confidence 467778 9999999999999999999 5568888886 89999999877
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.62 E-value=0.004 Score=45.79 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=42.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
+.-.+.|+| .+|+.+...||..+|+.||. ..|.++-|. -|||.|.+++.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~ 61 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQ 61 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHH
Confidence 445678888 99999999999999999995 457888876 89999999887
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.21 E-value=0.00026 Score=56.70 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.9
Q ss_pred EEEEeecCCCCCcceEEEEEEcChhh
Q 022814 64 DVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 64 ~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.+.|+.+. ..++|||||+|.+.++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~ 25 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAAT 25 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHh
Confidence 46777775 4699999999999887
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.48 E-value=0.0085 Score=56.50 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
.++|||. .|..+++.+|.++|++||+|..+.+-.+. .-||.|||.+.++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~ 101 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKES 101 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---C
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHH
Confidence 4789996 89999999999999999999999877654 3799999999887
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.08 E-value=0.019 Score=42.28 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEEcChhh------hcCCceeCC
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK--PRGFAFVAYEDQRN------NLNGAQILG 98 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~--s~G~aFV~F~~~~~------~lng~~i~g 98 (291)
-+-+|.|..||+.+||+++.+.++..=++.....+....+.+ ...-|||.|.+.++ .++|..+-+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 456799999999999999888777654443333332222222 23568999999988 778877643
No 219
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.09 E-value=0.32 Score=37.05 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCC-eEEEEecc
Q 022814 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILG-RTIRVDHV 106 (291)
Q Consensus 33 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~g-r~i~V~~a 106 (291)
...+.|.|-+.|+.. ...|...|++||+|+..... ....+-.|.|.+..+ ..||..|++ -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346678888998875 67788899999999988762 124699999999877 779999985 66666553
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.30 E-value=0.6 Score=36.08 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=48.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecC--------CCC-----CcceEEEEEEcChhh-----hcCCce
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDK--------GTG-----KPRGFAFVAYEDQRN-----NLNGAQ 95 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~-i~i~~d~--------~tg-----~s~G~aFV~F~~~~~-----~lng~~ 95 (291)
...|.|=+.|+.. ...|...|++||.|.. +.+.... .+. ....+-.|+|.+..+ ..||..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4456677887655 5678888999999976 2222100 001 124577999999887 779999
Q ss_pred eCCeEEEEeccC
Q 022814 96 ILGRTIRVDHVA 107 (291)
Q Consensus 96 i~gr~i~V~~a~ 107 (291)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999888776653
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.17 E-value=1.2 Score=42.27 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=39.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 34 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
-+..|+|+ +|..|...+|..+|+.||. ..|.++.+. .|||.|.+.+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~ 485 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQ 485 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHH
Confidence 35688887 9999999999999999995 467777665 79999999887
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=82.59 E-value=0.94 Score=35.16 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=29.8
Q ss_pred CCcceEEEEEEcChhh------hc-CCceeCCeEEEEeccCC
Q 022814 74 GKPRGFAFVAYEDQRN------NL-NGAQILGRTIRVDHVAK 108 (291)
Q Consensus 74 g~s~G~aFV~F~~~~~------~l-ng~~i~gr~i~V~~a~~ 108 (291)
...+|+++|+|.+.++ +| ||..|+| .|.|+++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4679999999999887 56 9999999 999998865
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=76.24 E-value=0.56 Score=34.85 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCEEEEcCCCCCCCHHH
Q 022814 32 YKDSAYVYVGGIPFDLTEGD 51 (291)
Q Consensus 32 ~~~~~~lfVgnL~~~~te~~ 51 (291)
....++|||+|||+.+|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34557899999999999864
No 224
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=56.04 E-value=3.9 Score=29.25 Aligned_cols=40 Identities=5% Similarity=0.083 Sum_probs=26.2
Q ss_pred ccccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 022814 128 GVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS 176 (291)
Q Consensus 128 ~~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~~~ 176 (291)
.+...|..-+...+..+.+..|..++. .+|||||.|....
T Consensus 25 ~L~~~F~~~G~i~v~~v~i~~d~~tg~---------srG~aFV~f~~~~ 64 (95)
T 2lkz_A 25 SIMTALSPYASLAVNNIRLIKDKQTQQ---------NRGFAFVQLSSAM 64 (95)
T ss_dssp HHHHHSTTTCCCCGGGEECCCCSSSSS---------CSSEEEEECSSSH
T ss_pred HHHHHHHhhCCccEEEEEEEecCCCCC---------CceEeEEEECCHH
Confidence 344555442222466788888888877 6678899987643
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.58 E-value=27 Score=23.35 Aligned_cols=62 Identities=13% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEEEcCC-CCCCCHHHHHHHHhcCC-----CeeEEEEeecCCCCCcceEEEEEEcChhh-----hcCCceeCCeEEEEec
Q 022814 37 YVYVGGI-PFDLTEGDLLAVFAQCG-----EIVDVNLVRDKGTGKPRGFAFVAYEDQRN-----NLNGAQILGRTIRVDH 105 (291)
Q Consensus 37 ~lfVgnL-~~~~te~~L~~~F~~~G-----~I~~i~i~~d~~tg~s~G~aFV~F~~~~~-----~lng~~i~gr~i~V~~ 105 (291)
+|||..= ...+...+|..++..-+ .|-.|.|.- .|.||+-..... .|++..+.|+.+.|..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHHHHHHHHHhccccCcCceEEEEE
Confidence 5666321 22466678888877544 355666643 289999987665 8899999999998876
Q ss_pred c
Q 022814 106 V 106 (291)
Q Consensus 106 a 106 (291)
+
T Consensus 74 ~ 74 (76)
T 2g0c_A 74 A 74 (76)
T ss_dssp C
T ss_pred C
Confidence 5
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.04 E-value=46 Score=26.69 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=33.8
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hcCCCeeEEEEeecCCCCCcceEEEEEEcChhh
Q 022814 37 YVYVGGIPF-D--------LTEGDLLAVF--AQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRN 89 (291)
Q Consensus 37 ~lfVgnL~~-~--------~te~~L~~~F--~~~G~I~~i~i~~d~~tg~s~G~aFV~F~~~~~ 89 (291)
++.|-|+|. . .....|.+.| ..|.++. |..+..+ .-+.|+|.|.|..--.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 344558886 2 3347899977 9998876 4444443 3368999999987544
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.86 E-value=3.9 Score=32.12 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEEc
Q 022814 50 GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE 85 (291)
Q Consensus 50 ~~L~~~F~~~G~I~~i~i~~d~~tg~s~G~aFV~F~ 85 (291)
++|..+|...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456667777777765432 3799999986
No 228
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=34.99 E-value=9 Score=29.59 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=26.9
Q ss_pred cccccccCCCCCCCceeEeecCCCCCCCCCCCCCCCCCCCCCCccC
Q 022814 129 VCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEG 174 (291)
Q Consensus 129 ~~~~f~~~~~g~~~~~~~~~d~~~~~~~g~g~~~~~~g~g~~~~~~ 174 (291)
+...|. .+|.+..|.+..|+.||. ..|||+|.|.+
T Consensus 23 Lk~~Fs--~fGeV~~~~li~Dp~Tg~---------slGfgfVef~d 57 (136)
T 2j8a_A 23 IKNYFK--KYGEISHFEAFNDPNSAL---------PLHVYLIKYAS 57 (136)
T ss_dssp HHHHHH--TTSCCSEEEEEECTTTCC---------EEEEEEEECC-
T ss_pred HHHHHH--hcCCeEEEEEEecCCCCc---------eeeEEEEEECC
Confidence 344444 367899999999999998 66788999986
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.30 E-value=31 Score=29.58 Aligned_cols=34 Identities=9% Similarity=0.312 Sum_probs=27.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD 70 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d 70 (291)
..+.|+|||+.++..-|..++.. ..+..+.++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999999987 77777666543
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=32.41 E-value=14 Score=32.03 Aligned_cols=37 Identities=11% Similarity=0.391 Sum_probs=29.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK 71 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d~ 71 (291)
...+.|+|||+.++..-|..++.....+..+.++..+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 3467899999999999999999876667777665543
No 231
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.24 E-value=33 Score=24.66 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=18.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC
Q 022814 35 SAYVYVGGIPFDLTEGDLLAVFAQC 59 (291)
Q Consensus 35 ~~~lfVgnL~~~~te~~L~~~F~~~ 59 (291)
...=+|++|...||-.||-..+.+.
T Consensus 16 g~er~VsGvT~~TTC~DVV~aL~~~ 40 (95)
T 2cs4_A 16 GVQRIVCGVTEVTTCQEVVIALAQA 40 (95)
T ss_dssp TEEECCSSBCSSSCHHHHHHHHHHH
T ss_pred CceeEEECCCCCCcHHHHHHHHHhc
Confidence 3334566889999999998877653
No 232
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.00 E-value=46 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec
Q 022814 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD 70 (291)
Q Consensus 37 ~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~d 70 (291)
...|+|||+.++..-|..++.....+..+.++..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 4589999999999999999987667776666544
No 233
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.47 E-value=49 Score=27.88 Aligned_cols=33 Identities=15% Similarity=0.482 Sum_probs=24.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLV 68 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~ 68 (291)
..+.|+|||+.++..-|..++...-.+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 468899999999999888888754445555443
No 234
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=23.06 E-value=43 Score=28.12 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=25.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~i~i~~ 69 (291)
..+.|+|||+.++..-|..++.....+..+.++.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 4588999999999999999987655455555443
No 235
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.35 E-value=60 Score=29.03 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhc
Q 022814 36 AYVYVGGIPFDLTEGDLLAVFAQ 58 (291)
Q Consensus 36 ~~lfVgnL~~~~te~~L~~~F~~ 58 (291)
..++|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35899999999999888887764
Done!