BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022818
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 92/124 (74%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY 82
R LH + RVGDL R+I FYT+ GMKLLR + PE KYS AF+G+GPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIF 142
GV Y++GT +GH A++ ++ + E IR GGNVTRE GP+KGGTT IAFV+DPDGY
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 143 ELIQ 146
ELI+
Sbjct: 122 ELIE 125
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 4/130 (3%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG 213
L MLRVGDL RSI FY K LGMKLLRT + PEYKY+LA +GY E + V+ELTYN+G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 214 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDG 273
V +Y G AY +A+S D+ ++ E + ++ GG +TR+ G + G T I DPDG
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDG 118
Query: 274 WKTVLVDNED 283
+K L++ +D
Sbjct: 119 YKIELIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 5/125 (4%)
Query: 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81
RR LH + RVGDLDR+IKFYTE GMK+LRK DVPE+KY+ FLG+GPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYI 141
YGVTSY +GH AI EDV +LV ++R P + + +AFV DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHD-----VPIDYEDESGFMAFVVDPDGYY 121
Query: 142 FELIQ 146
EL+
Sbjct: 122 IELLN 126
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG 213
+ M+RVGDL RSIKFY + LGMK+LR D PE KYTL LGY E +TVLELTYNYG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 214 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ--PGSIPGLNTKITSFVDP 271
VT Y AY +AI +DV +EL + + P + + VDP
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV-----------KELVADMRKHDVPIDYEDESGFMAFVVDP 117
Query: 272 DGWKTVLVDNEDFLKELQSE 291
DG+ L++ + +++ +++
Sbjct: 118 DGYYIELLNEKTMMEKAEAD 137
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 131/286 (45%), Gaps = 51/286 (17%)
Query: 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----------KYSNAFLGFGPE 70
RR LH V++VG+ +T +FY + GMK+LR + E K+S +GFGPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 QSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTH 130
HFV ELTYNYGV Y +G F +A+ + V N R + PL
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASS---QAVSNAR-------KLEWPLTEVAEG 135
Query: 131 IAFVKDPDGYIFELIQRG-PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK 189
+ + P GY F L R P +P+ +V L V DL +S+ ++ LGMK+ ++ +
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQR- 194
Query: 190 YTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST--------DDVYKSAE--- 238
A+LGYA D LEL G ++ A+ ++A S +D+ K
Sbjct: 195 ---ALLGYA--DNQCKLELQGVKGGVDHAA--AFGRIAFSCPQKELPDLEDLMKRENQKI 247
Query: 239 VVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284
+ LV+ + GK T Q + DPDG + V +E F
Sbjct: 248 LTPLVSLDTPGKATVQ----------VVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 32/158 (20%)
Query: 17 PKKDKRRFL--HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------- 67
P + FL + R+ D +++ FYT G+ LL+K D P K+S FL +
Sbjct: 23 PDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIP 82
Query: 68 --GPEQSHF------VVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENI 110
E++ + +ELT+N+G SY G GFGH IA DVY +
Sbjct: 83 KDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 111 RAKGGNVTREP--GPLKGGTTHIAFVKDPDGYIFELIQ 146
G ++P G +KG +AF++DPDGY E++
Sbjct: 143 EELGVKFVKKPDDGKMKG----LAFIQDPDGYWIEILN 176
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 48/194 (24%)
Query: 120 EPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P G T + DPD + + L Q MLR+ D +S+ FY + LG
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 177 MKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE----- 216
+ LL+ +D P K++L L Y +++ + LELT+N+G +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQS 114
Query: 217 YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSFV- 269
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F+
Sbjct: 115 YHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AFIQ 165
Query: 270 DPDG-WKTVLVDNE 282
DPDG W +L N+
Sbjct: 166 DPDGYWIEILNPNK 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS------------- 72
+ RV D +++ FYT GM L++K D P K+S FL + +
Sbjct: 33 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 92
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH IA DVY + G ++P
Sbjct: 93 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 122 --GPLKGGTTHIAFVKDPDGYIFELIQ 146
G +KG +AF++DPDGY E++
Sbjct: 153 DDGKMKG----LAFIQDPDGYWIEILN 175
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 48/194 (24%)
Query: 120 EPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P GG T ++ D D + + L Q MLRV D +S+ FY + LG
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 177 MKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE----- 216
M L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQS 113
Query: 217 YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSFV- 269
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F+
Sbjct: 114 YHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AFIQ 164
Query: 270 DPDG-WKTVLVDNE 282
DPDG W +L N+
Sbjct: 165 DPDGYWIEILNPNK 178
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS------------- 72
+ RV D +++ FYT GM L++K D P K+S FL + +
Sbjct: 37 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 96
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH IA DVY + G ++P
Sbjct: 97 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 156
Query: 122 --GPLKGGTTHIAFVKDPDGYIFELIQ 146
G +KG +AF++DPDGY E++
Sbjct: 157 DDGKMKG----LAFIQDPDGYWIEILN 179
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 48/199 (24%)
Query: 115 GNVTREPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFY 171
G+ EP P GG T ++ D D + + L Q MLRV D +S+ FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 172 EKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE 216
+ LGM L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTED 112
Query: 217 -----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKI 265
Y GN+ + + I+ DVY + + +ELG K ++P G + GL
Sbjct: 113 DETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL---- 164
Query: 266 TSFV-DPDG-WKTVLVDNE 282
+F+ DPDG W +L N+
Sbjct: 165 -AFIQDPDGYWIEILNPNK 182
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 30/145 (20%)
Query: 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS--------------- 72
+ RV D +++ FYT GM L++K D P K+S FL + +
Sbjct: 35 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 94
Query: 73 HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP-- 121
+ELT+N+G SY G GFGH IA DVY + G ++P
Sbjct: 95 KATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDD 154
Query: 122 GPLKGGTTHIAFVKDPDGYIFELIQ 146
G +KG +AF++DPDGY +++
Sbjct: 155 GKMKG----LAFIQDPDGYWIQILN 175
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 48/194 (24%)
Query: 120 EPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P GG T ++ D D + + L + MLRV D +S+ FY + LG
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 177 MKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE----- 216
M L++ D P K++L L Y +++ + LELT+N+G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQS 113
Query: 217 YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GSIPGLNTKITSFV- 269
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F+
Sbjct: 114 YHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AFIQ 164
Query: 270 DPDG-WKTVLVDNE 282
DPDG W +L N+
Sbjct: 165 DPDGYWIQILNPNK 178
>pdb|3BQX|A Chain A, High Resolution Crystal Structure Of A Glyoxalase-Related
Enzyme From Fulvimarina Pelagi
Length = 150
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 31 VGDLDRTIKFYTECFGMKLLRKRDVPEEKY--SNAFLGFGPEQSHFVVELTYNYG--VTS 86
+GDL+ + +FY E FG + + PE + N F+ + V L + G VTS
Sbjct: 13 IGDLEASARFYGEGFGWAPVFRN--PEIIFYQXNGFV----LATWLVQNLQEDVGVAVTS 66
Query: 87 YDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPLKGGTTHIAFVKDPDGYIFEL 144
H A +V L E + A GG + R P GG +V DPDG+I+E+
Sbjct: 67 RPGSXALAHNVRAETEVAPLXERLVAAGGQLLRPADAPPHGGLR--GYVADPDGHIWEI 123
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85
H V + + FY +KLL D+P + AFL G + + L+ +
Sbjct: 11 HIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIA 70
Query: 86 SY--DIGTGFGHFAIATEDVYKLVENIRAKGGN-VTREPGPLKGGTTHIAFV--KDPDGY 140
+ G G H AI + + + ++ ++ G + EP P G +AF+ + G
Sbjct: 71 KFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARG-AQVAFLHPRSARGV 129
Query: 141 IFELIQRGPTPEPL 154
++E ++ E L
Sbjct: 130 LYEFCEKKEQAENL 143
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVEL------- 78
H Y D D K+Y E FG L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV- 134
T + ++ G H A +D+ + +R +G + + L G I F+
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFMH 131
Query: 135 -KDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 25/116 (21%)
Query: 90 GTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149
G G A+AT DV E G R PG A + + LIQR
Sbjct: 72 GDGVADIAMATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDG 131
Query: 150 TPEPL-------------------------CQVMLRVGDLGRSIKFYEKALGMKLL 180
T L + L GDLG ++++YE+ALG + +
Sbjct: 132 TSAELPPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQI 187
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHF-VVELTYN 81
R H V V D+ TI+FY E G + K + L FG ++ + E+ +
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFSAVTF------KQNRKALIFGAQKINLHQQEMEFE 76
Query: 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIA--FVKDPDG 139
+ G+ F I + + +V I G ++ P G T I +++DPDG
Sbjct: 77 PKASRPTPGSADLCF-ITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDG 135
Query: 140 YIFELIQ 146
+ E+ Q
Sbjct: 136 NLIEISQ 142
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY 82
R H V DL++ FY G ++ +PE S F+ G + + L +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDS 64
Query: 83 GVTSY---DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV--KDP 137
+ + + G H I +++ V +++ K E + + F+ KD
Sbjct: 65 PIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDC 124
Query: 138 DGYIFELIQ 146
G + EL Q
Sbjct: 125 GGVLVELEQ 133
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG 213
L V + V DL ++ FY+ LG ++ V PE+ ++ + T +EL + G
Sbjct: 6 LNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLG----NTKMELLHPLG 61
Query: 214 V-------TEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKIT 266
+ + K + I D++ +A V++L +++ + + I G + K
Sbjct: 62 LDSPIAGFLQKNKAGGMHHICIEVDNI--NAAVMDLKKKKI--RSLSEEVKI-GAHGKPV 116
Query: 267 SFVDPDGWKTVLVDNE 282
F+ P VLV+ E
Sbjct: 117 IFLHPKDCGGVLVELE 132
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85
H + T FY E G ++LR+ PE+ L G ++ + +
Sbjct: 8 HVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARP 66
Query: 86 SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGT-THIAFVKDPDGYIFEL 144
SY G H A E + +++ + +G + EP + T F DPDG EL
Sbjct: 67 SYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGLPLEL 124
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 17 PKKDKRRFLH---AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSH 73
PK ++ RFLH + VG+ + FY G + L + + E S + +Q
Sbjct: 9 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGL--ETGSREVVSHVIKQGK 66
Query: 74 FVVELT-----YNYGVTSYDI--GTGFGHFAIATEDVYKLVENIRAKGGNVTREP 121
V L +N + + + G G A ED +V+ R +G + REP
Sbjct: 67 IVFVLCSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCEHIVQKARERGAKIVREP 121
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 87 YDIGTGFGHFAIATEDVYKLVENIRAKG 114
Y+ G G H A+ TED+ + ++R +G
Sbjct: 258 YNGGAGVQHIALRTEDIITTIRHLRERG 285
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVEL------- 78
H Y D D K+Y E FG L + + PE+ + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV- 134
T + ++ G H A +D+ + +R +G + + L G I F
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFXH 131
Query: 135 -KDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHF-VVELTYN 81
R H V V D+ TI+FY E G + K + L FG ++ + E +
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFSAVTF------KQNRKALIFGAQKINLHQQEXEFE 76
Query: 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIA--FVKDPDG 139
+ G+ F I + + +V I G ++ P G T I +++DPDG
Sbjct: 77 PKASRPTPGSADLCF-ITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRDPDG 135
Query: 140 YIFELIQ 146
+ E+ Q
Sbjct: 136 NLIEISQ 142
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 42 TECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101
+E G ++ R+ E Y+N PE+ V E +G+ F+ +
Sbjct: 65 SERAGGRVRTHRNSKEGWYANLGPMRIPEKHRIVREYIRKFGLN-------LNEFSQEND 117
Query: 102 DVYKLVENIRAKGGNVTREPGPLK 125
+ + ++NIR + G V ++PG LK
Sbjct: 118 NAWYFIKNIRKRVGEVNKDPGLLK 141
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 42 TECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101
+E G ++ R+ E+ Y+N PE+ V E +G+ F+ +
Sbjct: 65 SERAGGRVRTYRNDKEDWYANLGPMRLPEKHRIVREYIRKFGLQ-------LNEFSQEND 117
Query: 102 DVYKLVENIRAKGGNVTREPGPLK 125
+ + ++NIR + G V ++PG LK
Sbjct: 118 NAWYFIKNIRKRVGEVKKDPGVLK 141
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 18 KKDKRRFLH---AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHF 74
K ++ RFLH + VG+ + FY G + L R + E S + +Q
Sbjct: 3 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGL--ETGSREVVSHVIKQGKI 60
Query: 75 VVELT-----YNYGVTSYDI--GTGFGHFAIATEDVYKLVENIRAKGGNVTREP 121
V L+ +N + + + G G A ED +V+ R +G + REP
Sbjct: 61 VFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREP 114
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 87 YDIGTGFGHFAIATEDVYKLVENIRAKG 114
Y+ G G H A+ TED+ + ++R +G
Sbjct: 251 YNGGAGVQHIALKTEDIITAIRHLRERG 278
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 38 IKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95
I+ +C KL K +S A GFG E H +V+L V SY+ TG H
Sbjct: 49 IQSAVQC-AKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAH 105
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP-EQSHFVVELT-YNYG 83
H V D D++ +FY G +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 84 VTSYDI-----GTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPD 138
I G H A EDV + + A G V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 139 GYIFEL 144
G EL
Sbjct: 127 GLPLEL 132
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 42 TECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101
+E G ++ R+ E Y+N PE+ V E +G+ F+ E
Sbjct: 78 SERAGGQVKTYRNEKEGWYANLGPMRLPEKHRIVREYIRKFGLQ-------LNEFSQENE 130
Query: 102 DVYKLVENIRAKGGNVTREPGPL 124
+ + ++NIR + G V ++PG L
Sbjct: 131 NAWYFIKNIRKRVGEVNKDPGVL 153
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLG------YAEED-QTTVLELT 209
G +G + KALG KL+ TV PE LG Y+ ED VLELT
Sbjct: 151 GGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELT 205
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 59 KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGG--N 116
KYS FL + + +L T Y+IGTG GH + K V +I N
Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN 65
Query: 117 VTREPGPLKGGTTHI 131
++ E L T I
Sbjct: 66 LSSEKLKLNTRVTLI 80
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter
pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter, In A Closed Conformation With
Benzylhydantoin
Length = 501
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 208 LTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL--NTKI 265
+T YG+T N +A + VY +++ LG ++ G PG+ +T I
Sbjct: 155 VTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLG-EVMSMGGENPGMPFSTAI 213
Query: 266 TSFVDPDGWKTVLVDNEDFLKELQSE 291
FV GW V+V D +KE + +
Sbjct: 214 MIFVG--GWIAVVVSIHDIVKECKVD 237
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 212 YGVTEYTKGNAYAQVAISTDDVYKSAEV--------VNLVTQELGGK------------- 250
YG TE T+ A+ A VY++AEV VT E G+
Sbjct: 100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159
Query: 251 ----ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288
I+RQ SIP K+ V P GW +L D EL
Sbjct: 160 GFHGISRQ--SIPAERLKVFERVYPFGWLGLLADTPPVSHEL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,045,258
Number of Sequences: 62578
Number of extensions: 399643
Number of successful extensions: 1094
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 53
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)