Query 022818
Match_columns 291
No_of_seqs 199 out of 2419
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 3.8E-44 8.3E-49 301.9 34.4 283 2-288 3-285 (286)
2 TIGR03211 catechol_2_3 catecho 100.0 4.7E-32 1E-36 231.0 28.8 233 21-279 2-263 (303)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 9.8E-32 2.1E-36 228.1 28.9 237 20-282 1-257 (294)
4 KOG2943 Predicted glyoxalase [ 100.0 4E-32 8.6E-37 208.7 21.3 258 14-290 8-279 (299)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 1.9E-30 4.1E-35 219.2 27.6 234 21-281 1-263 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 6.8E-23 1.5E-27 177.5 22.8 222 22-255 1-267 (353)
7 PLN02875 4-hydroxyphenylpyruva 99.9 7.7E-21 1.7E-25 163.2 21.4 224 24-255 1-295 (398)
8 TIGR00068 glyox_I lactoylgluta 99.9 3.1E-20 6.8E-25 141.8 18.5 139 12-150 6-144 (150)
9 TIGR00068 glyox_I lactoylgluta 99.9 9.3E-21 2E-25 144.7 15.3 137 149-289 13-149 (150)
10 PLN02367 lactoylglutathione ly 99.9 1.2E-20 2.5E-25 149.9 14.8 130 152-287 74-228 (233)
11 COG2514 Predicted ring-cleavag 99.9 3E-19 6.4E-24 142.1 21.8 194 19-232 6-242 (265)
12 PRK10291 glyoxalase I; Provisi 99.8 2.1E-19 4.6E-24 133.7 16.3 124 28-151 1-124 (129)
13 PLN02367 lactoylglutathione ly 99.8 5.6E-19 1.2E-23 140.4 18.6 130 18-149 70-224 (233)
14 PRK10291 glyoxalase I; Provisi 99.8 9.6E-20 2.1E-24 135.5 13.6 122 158-283 1-122 (129)
15 cd08342 HPPD_N_like N-terminal 99.8 1.6E-19 3.5E-24 135.5 13.2 124 154-288 1-130 (136)
16 PLN03042 Lactoylglutathione ly 99.8 2.1E-18 4.6E-23 134.5 19.3 129 18-148 22-175 (185)
17 PLN03042 Lactoylglutathione ly 99.8 4.7E-19 1E-23 138.2 14.6 129 151-285 25-178 (185)
18 KOG0638 4-hydroxyphenylpyruvat 99.8 1E-19 2.2E-24 146.2 10.1 228 19-256 13-292 (381)
19 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 2.7E-18 5.8E-23 129.9 16.4 123 21-147 1-141 (142)
20 PRK11478 putative lyase; Provi 99.8 3E-18 6.5E-23 127.4 15.9 125 19-147 2-129 (129)
21 cd07233 Glyoxalase_I Glyoxalas 99.8 2.3E-18 5E-23 126.5 14.8 120 154-279 1-121 (121)
22 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.6E-18 3.4E-23 131.2 13.7 122 152-281 2-141 (142)
23 cd07233 Glyoxalase_I Glyoxalas 99.8 6.9E-18 1.5E-22 123.9 16.0 120 24-145 1-121 (121)
24 PLN02300 lactoylglutathione ly 99.8 3E-18 6.5E-23 144.6 14.8 131 149-283 20-150 (286)
25 cd08342 HPPD_N_like N-terminal 99.8 1.8E-17 3.9E-22 124.3 16.6 120 24-150 1-126 (136)
26 cd08358 Glo_EDI_BRP_like_21 Th 99.8 2.3E-17 5E-22 120.7 16.2 114 23-146 2-126 (127)
27 cd08358 Glo_EDI_BRP_like_21 Th 99.8 9.4E-18 2E-22 122.7 14.1 114 153-280 2-126 (127)
28 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.2E-17 4.7E-22 121.8 15.4 122 21-146 1-125 (125)
29 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.1E-17 4.5E-22 122.0 14.7 119 23-145 1-125 (125)
30 PRK11478 putative lyase; Provi 99.8 1.3E-17 2.9E-22 123.9 13.6 120 152-280 5-128 (129)
31 PRK04101 fosfomycin resistance 99.8 3.9E-17 8.6E-22 123.0 16.0 118 20-148 1-120 (139)
32 cd07243 2_3_CTD_C C-terminal d 99.8 2.3E-17 5E-22 124.7 14.3 121 151-281 4-125 (143)
33 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.2E-17 4.8E-22 121.8 13.4 119 153-279 1-125 (125)
34 TIGR03645 glyox_marine lactoyl 99.8 2.2E-17 4.8E-22 127.4 13.7 125 152-283 3-153 (162)
35 cd07257 THT_oxygenase_C The C- 99.8 9.1E-18 2E-22 128.4 11.5 120 153-283 1-127 (153)
36 TIGR03645 glyox_marine lactoyl 99.8 7.8E-17 1.7E-21 124.4 16.4 127 21-150 2-154 (162)
37 cd07257 THT_oxygenase_C The C- 99.8 3.2E-17 6.9E-22 125.4 13.8 119 23-148 1-126 (153)
38 cd07243 2_3_CTD_C C-terminal d 99.8 1.1E-16 2.3E-21 121.0 16.6 119 20-147 3-125 (143)
39 cd07265 2_3_CTD_N N-terminal d 99.7 7.7E-17 1.7E-21 118.6 15.1 116 21-148 2-120 (122)
40 cd08360 MhqB_like_C C-terminal 99.7 4.9E-17 1.1E-21 121.7 14.0 122 151-283 1-122 (134)
41 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 5.6E-17 1.2E-21 119.6 13.7 120 152-280 2-125 (125)
42 COG3185 4-hydroxyphenylpyruvat 99.7 2.7E-16 5.9E-21 129.2 17.6 229 15-256 15-275 (363)
43 TIGR03081 metmalonyl_epim meth 99.7 3.1E-17 6.7E-22 121.7 10.9 119 23-146 1-128 (128)
44 cd07256 HPCD_C_class_II C-term 99.7 1.5E-16 3.2E-21 122.8 14.6 122 151-282 1-124 (161)
45 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.5E-16 3.2E-21 116.8 14.0 114 22-147 1-119 (120)
46 TIGR03081 metmalonyl_epim meth 99.7 7.7E-17 1.7E-21 119.5 12.6 119 153-280 1-128 (128)
47 cd08360 MhqB_like_C C-terminal 99.7 2.7E-16 5.8E-21 117.7 15.6 117 22-148 2-121 (134)
48 cd07247 SgaA_N_like N-terminal 99.7 1.8E-16 3.8E-21 115.2 13.8 114 154-280 1-114 (114)
49 cd07237 BphC1-RGP6_C_like C-te 99.7 2.6E-16 5.6E-21 120.5 14.4 122 150-283 6-133 (154)
50 cd07265 2_3_CTD_N N-terminal d 99.7 1.9E-16 4.1E-21 116.6 13.2 116 151-282 2-120 (122)
51 PF00903 Glyoxalase: Glyoxalas 99.7 8.5E-17 1.8E-21 119.0 11.3 120 23-144 1-128 (128)
52 cd07258 PpCmtC_C C-terminal do 99.7 2.6E-16 5.6E-21 118.4 13.4 113 155-283 1-116 (141)
53 cd07237 BphC1-RGP6_C_like C-te 99.7 7E-16 1.5E-20 118.1 15.6 122 19-148 5-132 (154)
54 cd09014 BphC-JF8_C_like C-term 99.7 9E-16 2E-20 118.9 16.4 124 19-148 2-128 (166)
55 cd08361 PpCmtC_N N-terminal do 99.7 3.5E-16 7.7E-21 115.4 13.3 114 19-148 2-120 (124)
56 PRK06724 hypothetical protein; 99.7 7.3E-16 1.6E-20 113.9 14.8 114 19-148 3-124 (128)
57 cd09013 BphC-JF8_N_like N-term 99.7 7.5E-16 1.6E-20 113.2 14.7 115 19-148 2-119 (121)
58 cd07247 SgaA_N_like N-terminal 99.7 7.6E-16 1.6E-20 111.8 14.6 114 24-146 1-114 (114)
59 cd07263 Glo_EDI_BRP_like_16 Th 99.7 3.3E-16 7.1E-21 114.4 12.7 117 156-280 1-119 (119)
60 PRK04101 fosfomycin resistance 99.7 4.8E-16 1E-20 117.0 13.8 117 152-283 3-121 (139)
61 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 6.8E-16 1.5E-20 113.8 14.0 118 21-146 1-124 (125)
62 cd09011 Glo_EDI_BRP_like_23 Th 99.7 3.7E-16 8.1E-21 114.6 12.4 113 153-281 2-119 (120)
63 cd08343 ED_TypeI_classII_C C-t 99.7 1.3E-15 2.8E-20 113.5 15.4 117 25-150 1-120 (131)
64 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.8E-15 3.9E-20 111.3 15.8 117 27-146 3-121 (122)
65 cd07263 Glo_EDI_BRP_like_16 Th 99.7 1.1E-15 2.3E-20 111.7 14.2 117 26-146 1-119 (119)
66 cd07266 HPCD_N_class_II N-term 99.7 8.2E-16 1.8E-20 112.9 13.6 116 20-148 1-119 (121)
67 cd08364 FosX FosX, a fosfomyci 99.7 1.8E-15 4E-20 112.7 15.5 120 20-148 1-123 (131)
68 cd08363 FosB FosB, a fosfomyci 99.7 7.9E-16 1.7E-20 114.6 13.5 114 24-148 1-116 (131)
69 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.6E-15 3.5E-20 111.5 14.9 115 157-280 3-121 (122)
70 cd08363 FosB FosB, a fosfomyci 99.7 5.6E-16 1.2E-20 115.4 12.5 116 154-284 1-118 (131)
71 cd07256 HPCD_C_class_II C-term 99.7 2.7E-15 5.8E-20 115.8 16.2 118 22-148 2-124 (161)
72 cd07249 MMCE Methylmalonyl-CoA 99.7 1.1E-15 2.4E-20 113.1 13.5 119 154-280 1-128 (128)
73 cd08347 PcpA_C_like C-terminal 99.7 2.2E-15 4.8E-20 115.5 15.4 117 23-148 1-121 (157)
74 PF00903 Glyoxalase: Glyoxalas 99.7 2.5E-16 5.5E-21 116.4 9.8 120 153-278 1-128 (128)
75 cd07239 BphC5-RK37_C_like C-te 99.7 1.2E-15 2.6E-20 115.3 13.6 114 152-283 3-119 (144)
76 cd09013 BphC-JF8_N_like N-term 99.7 1.4E-15 3E-20 111.7 13.5 112 151-281 4-118 (121)
77 cd08343 ED_TypeI_classII_C C-t 99.7 1.9E-15 4.1E-20 112.6 14.1 116 155-283 1-119 (131)
78 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.5E-15 5.5E-20 110.9 14.5 117 24-147 1-125 (125)
79 cd08351 ChaP_like ChaP, an enz 99.7 3E-15 6.5E-20 110.3 14.8 112 20-147 1-121 (123)
80 cd07240 ED_TypeI_classII_N N-t 99.7 3.3E-15 7.2E-20 108.9 14.9 111 22-147 1-114 (117)
81 cd07255 Glo_EDI_BRP_like_12 Th 99.7 5E-15 1.1E-19 109.3 15.8 117 22-149 1-121 (125)
82 cd08347 PcpA_C_like C-terminal 99.7 1.4E-15 3.1E-20 116.5 13.2 117 153-282 1-121 (157)
83 cd09014 BphC-JF8_C_like C-term 99.7 2E-15 4.4E-20 117.0 14.1 120 152-281 5-127 (166)
84 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 3.1E-15 6.7E-20 109.9 14.3 115 157-280 5-121 (122)
85 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 2.1E-15 4.6E-20 111.1 13.3 117 152-280 2-124 (125)
86 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 4.7E-15 1E-19 108.9 15.1 116 27-147 5-122 (122)
87 cd07252 BphC1-RGP6_N_like N-te 99.7 1.8E-15 3.9E-20 111.0 12.8 112 153-282 2-118 (120)
88 cd08361 PpCmtC_N N-terminal do 99.7 1.3E-15 2.9E-20 112.3 12.1 111 152-282 5-120 (124)
89 cd08346 PcpA_N_like N-terminal 99.7 3.2E-15 7E-20 110.3 14.2 120 23-145 1-126 (126)
90 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2.7E-15 5.8E-20 110.7 13.6 115 154-281 1-125 (125)
91 cd07249 MMCE Methylmalonyl-CoA 99.7 2.5E-15 5.5E-20 111.2 13.5 118 24-146 1-128 (128)
92 cd07258 PpCmtC_C C-terminal do 99.7 4.3E-15 9.2E-20 111.8 14.8 114 25-150 1-117 (141)
93 cd08359 Glo_EDI_BRP_like_22 Th 99.7 3.9E-15 8.5E-20 108.9 14.3 112 25-146 3-119 (119)
94 cd07266 HPCD_N_class_II N-term 99.7 1.8E-15 4E-20 111.0 12.5 113 152-281 3-118 (121)
95 cd08359 Glo_EDI_BRP_like_22 Th 99.7 3E-15 6.6E-20 109.5 13.4 112 156-280 4-119 (119)
96 cd07267 THT_Oxygenase_N N-term 99.7 6.6E-15 1.4E-19 106.7 15.0 110 21-147 1-110 (113)
97 cd08346 PcpA_N_like N-terminal 99.7 2.5E-15 5.4E-20 110.9 12.8 120 153-279 1-126 (126)
98 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 2.1E-15 4.6E-20 109.0 11.9 113 24-144 1-114 (114)
99 cd07239 BphC5-RK37_C_like C-te 99.7 6.4E-15 1.4E-19 111.4 14.8 114 22-149 3-119 (144)
100 cd07252 BphC1-RGP6_N_like N-te 99.7 4.3E-15 9.2E-20 109.0 13.5 113 22-148 1-118 (120)
101 PF12681 Glyoxalase_2: Glyoxal 99.7 2.8E-15 6.1E-20 107.7 12.3 108 159-279 1-108 (108)
102 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 7E-15 1.5E-19 109.0 14.6 117 153-281 1-128 (128)
103 cd07255 Glo_EDI_BRP_like_12 Th 99.7 5.8E-15 1.3E-19 109.0 14.0 117 152-283 1-121 (125)
104 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 2.1E-15 4.5E-20 109.0 11.3 113 154-278 1-114 (114)
105 cd08351 ChaP_like ChaP, an enz 99.6 3.8E-15 8.2E-20 109.8 12.7 111 152-281 3-121 (123)
106 cd08362 BphC5-RrK37_N_like N-t 99.6 9.4E-15 2E-19 107.0 14.6 113 21-148 1-118 (120)
107 PF12681 Glyoxalase_2: Glyoxal 99.6 5.9E-15 1.3E-19 106.0 13.0 108 29-145 1-108 (108)
108 cd08364 FosX FosX, a fosfomyci 99.6 6.9E-15 1.5E-19 109.5 13.8 117 152-282 3-123 (131)
109 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.9E-14 4.1E-19 106.7 16.0 116 23-146 1-127 (128)
110 PRK06724 hypothetical protein; 99.6 5.3E-15 1.1E-19 109.3 12.6 110 152-281 6-123 (128)
111 cd08348 BphC2-C3-RGP6_C_like T 99.6 9.9E-15 2.1E-19 109.1 13.8 120 153-284 1-123 (134)
112 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 9.8E-15 2.1E-19 105.7 13.0 108 157-281 4-111 (112)
113 cd07240 ED_TypeI_classII_N N-t 99.6 1.2E-14 2.6E-19 105.9 13.4 111 152-281 1-114 (117)
114 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 2.6E-14 5.5E-19 103.4 14.6 109 26-147 3-111 (112)
115 cd08348 BphC2-C3-RGP6_C_like T 99.6 4.7E-14 1E-18 105.5 16.4 120 23-150 1-123 (134)
116 cd08362 BphC5-RrK37_N_like N-t 99.6 1.1E-14 2.5E-19 106.6 12.5 112 152-282 2-118 (120)
117 cd08349 BLMA_like Bleomycin bi 99.6 1.5E-14 3.3E-19 104.5 13.0 109 158-280 3-112 (112)
118 cd08345 Fosfomycin_RP Fosfomyc 99.6 1.6E-14 3.4E-19 104.7 13.0 109 26-147 1-111 (113)
119 COG3324 Predicted enzyme relat 99.6 1.4E-14 3.1E-19 104.1 12.3 120 151-282 7-126 (127)
120 cd07267 THT_Oxygenase_N N-term 99.6 1.9E-14 4.2E-19 104.3 12.8 109 152-281 2-110 (113)
121 TIGR03211 catechol_2_3 catecho 99.6 4.1E-14 8.9E-19 120.7 16.8 119 19-146 141-264 (303)
122 cd07262 Glo_EDI_BRP_like_19 Th 99.6 2.8E-14 6.1E-19 105.0 12.9 114 154-279 1-122 (123)
123 cd07244 FosA FosA, a Fosfomyci 99.6 2.6E-14 5.7E-19 104.9 12.6 110 153-283 1-112 (121)
124 cd08345 Fosfomycin_RP Fosfomyc 99.6 1.7E-14 3.8E-19 104.4 11.4 109 156-281 1-111 (113)
125 cd08350 BLMT_like BLMT, a bleo 99.6 2.8E-14 6.1E-19 104.6 12.6 108 156-281 5-119 (120)
126 cd07244 FosA FosA, a Fosfomyci 99.6 3.5E-14 7.6E-19 104.2 13.0 109 23-148 1-111 (121)
127 cd07235 MRD Mitomycin C resist 99.6 4E-14 8.6E-19 104.1 13.1 115 24-145 1-121 (122)
128 TIGR02295 HpaD 3,4-dihydroxyph 99.6 7.2E-14 1.6E-18 118.7 16.5 121 19-148 132-257 (294)
129 cd07262 Glo_EDI_BRP_like_19 Th 99.6 6.2E-14 1.3E-18 103.2 14.1 114 24-145 1-122 (123)
130 cd08349 BLMA_like Bleomycin bi 99.6 9.1E-14 2E-18 100.4 14.7 109 28-146 3-112 (112)
131 cd08354 Glo_EDI_BRP_like_13 Th 99.6 6.7E-14 1.5E-18 102.7 14.1 113 24-146 1-121 (122)
132 cd07261 Glo_EDI_BRP_like_11 Th 99.6 3.3E-14 7.1E-19 103.2 12.2 108 157-279 2-113 (114)
133 cd07254 Glo_EDI_BRP_like_20 Th 99.6 7.8E-14 1.7E-18 102.2 14.2 112 25-148 3-118 (120)
134 cd07235 MRD Mitomycin C resist 99.6 3E-14 6.5E-19 104.7 11.7 113 154-279 1-121 (122)
135 KOG2943 Predicted glyoxalase [ 99.6 8E-15 1.7E-19 113.7 8.7 128 150-290 14-152 (299)
136 cd09012 Glo_EDI_BRP_like_24 Th 99.6 3.8E-14 8.3E-19 104.5 12.0 112 155-280 2-123 (124)
137 cd08357 Glo_EDI_BRP_like_18 Th 99.6 3E-14 6.5E-19 105.1 11.4 113 156-280 2-124 (125)
138 cd08354 Glo_EDI_BRP_like_13 Th 99.6 6E-14 1.3E-18 103.0 12.8 114 154-281 1-122 (122)
139 cd07261 Glo_EDI_BRP_like_11 Th 99.6 8.7E-14 1.9E-18 101.0 13.3 108 27-145 2-113 (114)
140 cd06587 Glo_EDI_BRP_like This 99.6 3.9E-14 8.5E-19 101.6 11.3 112 156-278 1-112 (112)
141 cd08350 BLMT_like BLMT, a bleo 99.6 1.2E-13 2.6E-18 101.2 13.8 108 26-147 5-119 (120)
142 cd06587 Glo_EDI_BRP_like This 99.6 1.3E-13 2.8E-18 98.8 13.7 112 26-144 1-112 (112)
143 cd08344 MhqB_like_N N-terminal 99.6 8.5E-14 1.8E-18 100.7 12.7 106 153-281 2-109 (112)
144 cd07254 Glo_EDI_BRP_like_20 Th 99.6 1.1E-13 2.3E-18 101.4 13.4 112 155-282 3-118 (120)
145 cd08344 MhqB_like_N N-terminal 99.6 1.2E-13 2.5E-18 100.0 13.4 108 22-148 1-110 (112)
146 COG3324 Predicted enzyme relat 99.6 2.7E-13 5.8E-18 97.5 14.9 122 19-148 5-126 (127)
147 cd08357 Glo_EDI_BRP_like_18 Th 99.6 8.4E-14 1.8E-18 102.7 12.4 113 26-146 2-124 (125)
148 cd09012 Glo_EDI_BRP_like_24 Th 99.6 9.8E-14 2.1E-18 102.3 12.5 112 25-146 2-123 (124)
149 TIGR03213 23dbph12diox 2,3-dih 99.6 1.6E-13 3.4E-18 116.1 15.1 118 21-147 140-263 (286)
150 PF13669 Glyoxalase_4: Glyoxal 99.5 1E-13 2.3E-18 99.7 11.7 95 25-121 1-97 (109)
151 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.4E-13 3.1E-18 99.7 11.6 104 157-280 5-113 (113)
152 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.5E-13 5.4E-18 99.5 12.3 110 157-280 2-120 (121)
153 cd08356 Glo_EDI_BRP_like_17 Th 99.5 2.1E-13 4.6E-18 98.8 11.0 104 27-146 5-113 (113)
154 PF13669 Glyoxalase_4: Glyoxal 99.5 1.6E-13 3.5E-18 98.7 9.9 95 155-255 1-97 (109)
155 cd07251 Glo_EDI_BRP_like_10 Th 99.5 6.4E-13 1.4E-17 97.3 12.2 110 27-146 2-120 (121)
156 KOG2944 Glyoxalase [Carbohydra 99.4 9.9E-13 2.1E-17 95.9 9.4 125 21-147 20-168 (170)
157 KOG2944 Glyoxalase [Carbohydra 99.4 3E-12 6.5E-17 93.4 10.4 119 153-282 42-169 (170)
158 COG2514 Predicted ring-cleavag 99.4 9.1E-12 2E-16 99.6 12.7 122 149-283 6-128 (265)
159 cd07250 HPPD_C_like C-terminal 99.3 2.7E-11 5.8E-16 95.8 11.5 100 21-122 1-113 (191)
160 cd07250 HPPD_C_like C-terminal 99.3 1.7E-11 3.8E-16 96.9 10.0 99 152-256 2-113 (191)
161 COG3565 Predicted dioxygenase 99.2 2.2E-10 4.8E-15 78.8 10.4 118 22-147 3-129 (138)
162 COG2764 PhnB Uncharacterized p 99.2 2.7E-09 5.8E-14 78.3 15.4 118 27-149 4-133 (136)
163 COG3565 Predicted dioxygenase 99.1 7.1E-10 1.5E-14 76.4 10.1 118 153-282 4-130 (138)
164 cd06588 PhnB_like Escherichia 99.1 1.1E-09 2.3E-14 81.1 12.1 111 158-279 4-128 (128)
165 COG2764 PhnB Uncharacterized p 99.1 2.1E-09 4.6E-14 78.8 13.0 117 158-283 5-133 (136)
166 cd06588 PhnB_like Escherichia 99.1 5.9E-09 1.3E-13 77.1 15.0 110 28-144 4-127 (128)
167 TIGR01263 4HPPD 4-hydroxypheny 99.1 7.7E-10 1.7E-14 96.2 11.6 103 18-122 153-268 (353)
168 PF13468 Glyoxalase_3: Glyoxal 99.1 4.7E-09 1E-13 82.1 13.4 147 24-175 1-175 (175)
169 COG3607 Predicted lactoylgluta 99.0 1.2E-08 2.6E-13 71.7 10.8 119 154-283 4-129 (133)
170 COG0346 GloA Lactoylglutathion 99.0 3.3E-09 7.2E-14 78.3 8.7 121 153-280 2-138 (138)
171 COG0346 GloA Lactoylglutathion 98.9 4E-09 8.6E-14 77.9 8.2 122 22-146 1-138 (138)
172 PF14696 Glyoxalase_5: Hydroxy 98.9 1E-08 2.2E-13 75.6 9.3 124 18-150 4-129 (139)
173 PLN02875 4-hydroxyphenylpyruva 98.9 8.3E-09 1.8E-13 89.4 9.1 101 19-121 176-295 (398)
174 COG3607 Predicted lactoylgluta 98.8 5.9E-08 1.3E-12 68.3 9.4 117 23-149 3-129 (133)
175 KOG0638 4-hydroxyphenylpyruvat 98.7 2.9E-08 6.4E-13 80.8 5.9 132 152-287 16-154 (381)
176 PF14506 CppA_N: CppA N-termin 98.7 1.9E-06 4.2E-11 60.5 13.7 114 25-148 2-115 (125)
177 PRK01037 trmD tRNA (guanine-N( 98.7 2.8E-07 6.1E-12 77.3 10.6 108 152-280 246-353 (357)
178 PRK01037 trmD tRNA (guanine-N( 98.6 4.4E-07 9.5E-12 76.2 10.3 106 22-147 246-354 (357)
179 PRK10148 hypothetical protein; 98.5 2.6E-05 5.7E-10 58.8 16.0 116 27-150 5-144 (147)
180 PF14506 CppA_N: CppA N-termin 98.4 9.5E-06 2.1E-10 57.0 12.0 113 156-284 3-117 (125)
181 PRK10148 hypothetical protein; 98.4 8.4E-06 1.8E-10 61.5 12.7 116 158-282 6-142 (147)
182 COG3185 4-hydroxyphenylpyruvat 98.2 4.9E-06 1.1E-10 69.4 7.9 102 19-122 163-275 (363)
183 PF14696 Glyoxalase_5: Hydroxy 98.1 5.6E-05 1.2E-09 55.9 11.0 117 153-284 9-129 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.9 6.6E-05 1.4E-09 58.6 8.0 87 154-250 1-101 (175)
185 PF06983 3-dmu-9_3-mt: 3-demet 97.0 0.038 8.2E-07 39.8 11.9 99 162-279 11-116 (116)
186 PF06983 3-dmu-9_3-mt: 3-demet 96.6 0.16 3.5E-06 36.5 12.7 96 32-145 11-116 (116)
187 PF15067 FAM124: FAM124 family 95.9 0.11 2.3E-06 41.6 9.5 104 23-144 128-235 (236)
188 PF15067 FAM124: FAM124 family 95.2 0.6 1.3E-05 37.4 11.4 125 132-278 108-235 (236)
189 PF14507 CppA_C: CppA C-termin 94.9 0.096 2.1E-06 36.3 5.6 92 154-278 6-100 (101)
190 PF14507 CppA_C: CppA C-termin 94.5 0.13 2.9E-06 35.6 5.5 93 23-144 5-100 (101)
191 COG3865 Uncharacterized protei 86.4 11 0.00025 27.9 9.4 46 224-281 79-124 (151)
192 PF13670 PepSY_2: Peptidase pr 69.2 17 0.00037 24.1 5.1 45 102-148 30-74 (83)
193 PRK11700 hypothetical protein; 64.9 66 0.0014 25.2 9.3 79 21-102 37-120 (187)
194 PF06185 YecM: YecM protein; 64.1 69 0.0015 25.1 9.6 77 22-102 33-115 (185)
195 PHA02754 hypothetical protein; 62.6 19 0.0004 22.0 3.7 49 232-282 15-63 (67)
196 cd04895 ACT_ACR_1 ACT domain-c 59.4 39 0.00085 21.9 5.2 52 226-277 4-56 (72)
197 cd04882 ACT_Bt0572_2 C-termina 57.6 26 0.00056 21.4 4.2 26 92-117 39-64 (65)
198 COG4747 ACT domain-containing 56.7 72 0.0016 22.9 8.6 88 21-119 39-135 (142)
199 cd04883 ACT_AcuB C-terminal AC 55.6 34 0.00073 21.5 4.6 28 93-120 42-71 (72)
200 PF13670 PepSY_2: Peptidase pr 55.3 37 0.0008 22.5 4.8 44 232-281 30-73 (83)
201 cd04882 ACT_Bt0572_2 C-termina 54.6 27 0.00058 21.4 3.9 26 222-251 39-64 (65)
202 cd07268 Glo_EDI_BRP_like_4 Thi 50.6 1.1E+02 0.0023 23.1 8.9 76 24-102 2-82 (149)
203 PF07063 DUF1338: Domain of un 49.5 52 0.0011 28.1 5.8 44 25-69 36-84 (302)
204 COG0051 RpsJ Ribosomal protein 49.5 39 0.00084 23.7 4.1 48 226-274 11-58 (104)
205 PTZ00039 40S ribosomal protein 48.6 85 0.0018 22.5 5.9 44 230-274 28-71 (115)
206 PF02208 Sorb: Sorbin homologo 44.3 11 0.00024 21.7 0.6 25 152-176 10-34 (47)
207 TIGR01046 S10_Arc_S20_Euk ribo 43.7 51 0.0011 22.9 4.1 44 230-274 12-55 (99)
208 PF09142 TruB_C: tRNA Pseudour 43.6 45 0.00097 20.4 3.4 43 231-283 4-46 (56)
209 TIGR00318 cyaB adenylyl cyclas 39.1 1.8E+02 0.0039 22.4 15.1 136 97-249 7-159 (174)
210 PF07063 DUF1338: Domain of un 39.0 61 0.0013 27.7 4.6 30 219-252 181-216 (302)
211 PRK12271 rps10p 30S ribosomal 37.3 74 0.0016 22.2 4.1 43 231-274 14-56 (102)
212 CHL00135 rps10 ribosomal prote 35.5 72 0.0016 22.3 3.8 47 227-274 15-61 (101)
213 KOG4657 Uncharacterized conser 34.1 91 0.002 25.2 4.5 22 161-182 144-165 (246)
214 PRK00596 rpsJ 30S ribosomal pr 33.0 81 0.0018 22.0 3.8 44 230-274 15-58 (102)
215 PF08445 FR47: FR47-like prote 32.8 1.1E+02 0.0024 20.3 4.4 24 28-52 59-82 (86)
216 PF11080 DUF2622: Protein of u 31.9 88 0.0019 21.6 3.6 32 101-147 21-52 (96)
217 cd04897 ACT_ACR_3 ACT domain-c 31.9 1.5E+02 0.0032 19.4 5.1 52 226-277 4-56 (75)
218 PF09162 Tap-RNA_bind: Tap, RN 31.3 1.2E+02 0.0026 20.6 4.2 35 225-281 46-80 (88)
219 TIGR01049 rpsJ_bact ribosomal 30.6 81 0.0018 21.8 3.4 44 230-274 12-55 (99)
220 PRK11700 hypothetical protein; 29.2 2.9E+02 0.0062 21.8 7.1 78 152-232 38-120 (187)
221 cd04906 ACT_ThrD-I_1 First of 28.6 1.2E+02 0.0026 20.1 3.9 27 93-119 41-71 (85)
222 cd04927 ACT_ACR-like_2 Second 28.4 1.7E+02 0.0037 18.9 5.9 49 226-274 3-53 (76)
223 cd07268 Glo_EDI_BRP_like_4 Thi 27.4 2.7E+02 0.0059 21.0 8.4 76 154-232 2-82 (149)
224 cd04900 ACT_UUR-like_1 ACT dom 27.2 1.7E+02 0.0037 18.5 4.9 53 225-277 3-57 (73)
225 PRK00969 hypothetical protein; 27.2 1.5E+02 0.0033 27.2 5.2 76 101-180 324-405 (508)
226 KOG4657 Uncharacterized conser 27.1 52 0.0011 26.5 2.2 21 32-52 145-165 (246)
227 cd04908 ACT_Bt0572_1 N-termina 27.0 1.3E+02 0.0029 18.5 3.8 23 95-117 42-64 (66)
228 COG3865 Uncharacterized protei 26.8 2.8E+02 0.006 20.9 12.0 110 22-147 4-124 (151)
229 PF09066 B2-adapt-app_C: Beta2 26.7 2.3E+02 0.005 19.8 7.0 68 101-172 36-107 (114)
230 PTZ00330 acetyltransferase; Pr 26.2 94 0.002 22.5 3.5 25 24-51 116-140 (147)
231 PRK06704 RNA polymerase factor 25.7 40 0.00087 27.4 1.4 30 247-279 197-226 (228)
232 PF07494 Reg_prop: Two compone 25.5 85 0.0018 15.1 2.1 13 265-277 8-20 (24)
233 COG4747 ACT domain-containing 24.4 2.8E+02 0.006 20.1 12.7 115 103-253 17-135 (142)
234 TIGR03884 sel_bind_Methan sele 24.4 1.3E+02 0.0028 19.6 3.2 23 229-251 23-45 (74)
235 PF00583 Acetyltransf_1: Acety 21.1 88 0.0019 19.8 2.2 25 23-48 58-83 (83)
236 PF13176 TPR_7: Tetratricopept 21.0 70 0.0015 17.0 1.4 19 160-178 11-29 (36)
237 smart00300 ChSh Chromo Shadow 20.7 2.2E+02 0.0047 17.7 3.7 44 135-178 16-60 (61)
238 PF13508 Acetyltransf_7: Acety 20.5 1.3E+02 0.0029 19.1 3.0 21 26-49 59-79 (79)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=3.8e-44 Score=301.89 Aligned_cols=283 Identities=80% Similarity=1.318 Sum_probs=229.6
Q ss_pred CCCCcccccccccCCCCCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeec
Q 022818 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (291)
|.+|++.+.+...+++++.+.+|.|++|.|+|++++++||+++|||++..+...++..+...++..++...++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 34667777778889998999999999999999999999999999999987655555555566776655445666777654
Q ss_pred CCCCcccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCCCceEEEeee
Q 022818 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~~~~~~~v~l~v 161 (291)
........+.+..|++|.|+|+++++++|+++|+++...|...++|..+++||+||+|+.|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 43333334568899999999999999999999999888877777665556899999999999999988888999999999
Q ss_pred CChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhHHHHH
Q 022818 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~~~l~ 241 (291)
+|++++.+||+++|||++......++.+|...++..........+++..+.+......+++.+|++|.|+|++++++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999987655555556777766543322234566655443333345678999999999999999999
Q ss_pred HHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhhhhhh
Q 022818 242 LVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288 (291)
Q Consensus 242 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~~~~~ 288 (291)
+++|+++..+|...|+.+++.++|+||||+.|+|+++.++.|+|
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~ 285 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKEL 285 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhc
Confidence 99999999998888865568899999999999999999999886
No 2
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=4.7e-32 Score=230.95 Aligned_cols=233 Identities=22% Similarity=0.266 Sum_probs=162.0
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v 100 (291)
+++|+|+.|.|+|++++++||+++|||++..+... .+++.......+..+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 67899999999999999999999999998765321 23333211111222333221 124689999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC---------------------CCCceE
Q 022818 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~---------------------~~~~~~ 156 (291)
+ |+++++++|+++|+++...+.....+....++|+||+|+.|||++.... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7899999999999998765542222222348999999999999985431 235899
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccc-eEEEeccccCCceeEEEEeeecCcceeecCcc-eeEEEEEecchH
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNA-YAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~hi~~~v~di~ 234 (291)
|+|.|+|++++.+||+++|||++......+++.. ...++..... ...+.+.. ..+.+ +.|+||.|+|++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVG-------DPEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--Ccccceec-------CCCCCceEEEEEEcCCHH
Confidence 9999999999999999999999876654333321 2333432221 22222211 01234 889999999744
Q ss_pred H---hHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 235 K---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 235 ~---~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
+ +.++| +++|+++..+|...+....+++||+||+||+|||+
T Consensus 220 ~v~~~~~~l----~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 220 DVLKAADVM----SKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred HHHHHHHHH----HhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 3 44556 99999988887765533357899999999999998
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=9.8e-32 Score=228.13 Aligned_cols=237 Identities=23% Similarity=0.276 Sum_probs=163.6
Q ss_pred cceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022818 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~ 99 (291)
+|.+|+|+.|.|+|++++++||+++|||++..+.. . ..++..........+.+... ...+..|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~----~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E----YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C----eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999876532 1 23343211111222323221 12468899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC---------------CCCCceEEEeee
Q 022818 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~---------------~~~~~~~v~l~v 161 (291)
|+ |+++++++|+++|+++...+. +++. +.+||+||+||.|||+.... .+.++.|++|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQP-EALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCCc-eEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 96 789999999999998776432 2222 45899999999999987431 134689999999
Q ss_pred CChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhHHHHH
Q 022818 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~~~l~ 241 (291)
+|++++.+||+++|||++......+.+.....++..... ...+.+.. ..++++.|+||.|+|.++. .++.
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v-~~~~ 214 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTN-------GNGPRLHHIAYWVHDPLNI-IKAC 214 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeec-------CCCCceeeEEEEcCCHHHH-HHHH
Confidence 999999999999999998765433333323344432211 22333321 1246789999999994433 2333
Q ss_pred HHHHHhCCe--eecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 242 LVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 242 ~~~~~~G~~--~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
++|+++|++ +...|..+...+..++|++||+||+|||+...
T Consensus 215 ~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 215 DILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 444999997 65566654433347799999999999998754
No 4
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-32 Score=208.71 Aligned_cols=258 Identities=50% Similarity=0.862 Sum_probs=216.1
Q ss_pred cCCCCCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCC-----------CceeEEEEecCCCCcceEEEeeecC
Q 022818 14 LEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNY 82 (291)
Q Consensus 14 ~~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (291)
..+++.+-.+.-|+++.|-|..+++.||+++|||.+....++++ ++|.-.++++|+...+|+++++.++
T Consensus 8 ~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNY 87 (299)
T KOG2943|consen 8 LCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNY 87 (299)
T ss_pred hhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEecc
Confidence 35666777889999999999999999999999999998888877 6788889999999999999999999
Q ss_pred CCCcccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCCCceEEEeeeC
Q 022818 83 GVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRVG 162 (291)
Q Consensus 83 ~~~~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~~~~~~~v~l~v~ 162 (291)
+++.+..|.++.|+.+.++|+-...+.+...|.+ ..|.. .+++.||||+.+++++..+.+.++..|.|+|.
T Consensus 88 gV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~-~~~v~dPdGykF~l~~~~p~s~pv~~V~l~Vg 158 (299)
T KOG2943|consen 88 GVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK--------GSGCG-IAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVG 158 (299)
T ss_pred CccceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccceE-EEEEECCCCcEEEEeccCCCCCCeEEEEEEeh
Confidence 9999999999999999999987777776665532 12333 37889999999999998899999999999999
Q ss_pred ChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhHHHHHH
Q 022818 163 DLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNL 242 (291)
Q Consensus 163 d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~~~l~~ 242 (291)
|+++++.||.+.||+++.+. +..++.++++++.+ ...||++++.+...+..+.+...+++..+++..+.+.+
T Consensus 159 dL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i-- 230 (299)
T KOG2943|consen 159 DLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI-- 230 (299)
T ss_pred hHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH--
Confidence 99999999999999998763 33467778888776 68999999998887777777777777788999999999
Q ss_pred HHHHhCCeeecCCcc--CCCCC-ceEEEEECCCCceEEEeechhhhhhhhc
Q 022818 243 VTQELGGKITRQPGS--IPGLN-TKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 243 ~~~~~G~~~~~~~~~--~~~~~-~~~~~~~DpdG~~iel~~~~~~~~~~~~ 290 (291)
+..+.++..+... .|+.. ..++-+.||||+.|+|+..+++.+...+
T Consensus 231 --K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk~ 279 (299)
T KOG2943|consen 231 --KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSKI 279 (299)
T ss_pred --HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhcc
Confidence 7777776666544 33322 3567789999999999999998876654
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=1.9e-30 Score=219.20 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=163.4
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v 100 (291)
|.+|.|+.|.|+|+++|.+||+++|||+...+.. ++ ..++..+... ..+.+.... ..+..|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~~--~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSRA--HRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCCc--eEEEEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999999754321 11 2344554322 223232221 12577899999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEeCCCC------------------CCCceEE
Q 022818 101 ED---VYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRGPT------------------PEPLCQV 157 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~Dp~G~~iel~~~~~~------------------~~~~~~v 157 (291)
++ ++++.++|+++|+++...+... ..+....++|.||+||.+|+...... +.++.||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 88 8899999999999887654321 12333458999999999999874311 1268899
Q ss_pred EeeeCChhhhHHHHHHhcCCeeeeeeccCC--c-cceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchH
Q 022818 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPE--Y-KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 158 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~ 234 (291)
.|.|+|++++.+||+++|||++......+. + .+...++..... +..+.+.. . +..+++.|++|.|+|++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~-~-----~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAA-G-----PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEec-C-----CCCCceEEEEEEcCCHH
Confidence 999999999999999999999876543221 1 122444543322 33344321 1 12457899999999866
Q ss_pred H---hHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 235 K---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 235 ~---~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+ +.++| +++|+ ....|.+++.++.+++|++||+|++|||...
T Consensus 219 ~v~~~~~~l----~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 219 DVGLALDRV----DADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HHHHHHHHH----HHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 5 56666 99999 5556666554456889999999999999763
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.92 E-value=6.8e-23 Score=177.45 Aligned_cols=222 Identities=22% Similarity=0.371 Sum_probs=148.7
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCC----cc--cCCCCceE
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT----SY--DIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~--~~g~~~~~ 95 (291)
++++|+.|.|+|++++.+||++.|||+........... ..+.+..+ ...+.+ ..+.... .+ .+|++++|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G--~~~l~L--~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG--QINFVL--TAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC--CEEEEE--ecCCCCCchHHHHHHhCCCceEE
Confidence 46899999999999999999999999998763222221 22334433 333333 3322111 11 26789999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC----------------------C---
Q 022818 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP----------------------T--- 150 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~----------------------~--- 150 (291)
+||.|+|++++++++.++|+++..+|.....|...+.-+..+.|..+.|++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999887765431122222223444444444443210 0
Q ss_pred CCCceEEEeeeC--ChhhhHHHHHHhcCCeeeeeeccCCc--cc-eEEEeccccCCceeEEEEeeecCc---c------e
Q 022818 151 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEY--KY-TLAMLGYAEEDQTTVLELTYNYGV---T------E 216 (291)
Q Consensus 151 ~~~~~~v~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~l~~~~~~---~------~ 216 (291)
..+++|+++.|. |+++++.||+++|||++....+.... .. +.++.. +. ....|++..+... . .
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~-~~--g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS-PD--GKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC-CC--CcEEEEEeccCCCCCCCHHHHHHH
Confidence 124999999999 99999999999999998766543221 11 222222 12 2466777553211 1 1
Q ss_pred eecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCC
Q 022818 217 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 217 ~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~ 255 (291)
...|+|++||||.|+|+++++++| +++|++++..|
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 224789999999999999999999 99999998877
No 7
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.88 E-value=7.7e-21 Score=163.16 Aligned_cols=224 Identities=18% Similarity=0.263 Sum_probs=159.0
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCC--ceeEEEEecCCCCcceEEEeeecCC------------------
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYG------------------ 83 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 83 (291)
|+||.+.|.|.+++..||+..|||+.+.+.....+ ......++ ++.+.|++.-.-...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r--~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR--SGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFS 78 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE--eCCEEEEEeCCCCCccccccccccccccccccC
Confidence 68999999999999999999999999886653222 22333444 445666554332110
Q ss_pred C---Ccc--cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecC----CCceEEEEEECCCCCEEEEEeCCC-----
Q 022818 84 V---TSY--DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLK----GGTTHIAFVKDPDGYIFELIQRGP----- 149 (291)
Q Consensus 84 ~---~~~--~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~----~g~~~~~~~~Dp~G~~iel~~~~~----- 149 (291)
. ..+ .+|++++.|+|+|+|++++++++.++|++...+|.... .|...+.-+..+.|.++.|++...
T Consensus 79 ~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~~~ 158 (398)
T PLN02875 79 SDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGAK 158 (398)
T ss_pred cHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCCCc
Confidence 0 011 26889999999999999999999999999887766542 223334556777777777776421
Q ss_pred ----------C--------CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCc-----cceEEEeccccCCceeEE
Q 022818 150 ----------T--------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-----KYTLAMLGYAEEDQTTVL 206 (291)
Q Consensus 150 ----------~--------~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l 206 (291)
. ..+|+||++.|++++.++.||+++|||+..+..+.++. +.+...+..+. ....+
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~i 236 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLL 236 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEE
Confidence 0 12599999999999999999999999998865544322 22444454333 24566
Q ss_pred EEeeecC----cce------eecCcceeEEEEEecchHHhHHHHHHHHHHh----CCeeecCC
Q 022818 207 ELTYNYG----VTE------YTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 255 (291)
Q Consensus 207 ~l~~~~~----~~~------~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~----G~~~~~~~ 255 (291)
+|..+.. .++ ...|+|++||||.|+||.+++++| +++ |++++..|
T Consensus 237 pLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 237 PLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 6655432 111 235789999999999999999999 888 99999865
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.87 E-value=3.1e-20 Score=141.79 Aligned_cols=139 Identities=64% Similarity=1.075 Sum_probs=106.8
Q ss_pred cccCCCCCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCC
Q 022818 12 ELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT 91 (291)
Q Consensus 12 ~~~~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 91 (291)
.....|+...++|+|+.|.|+|++++.+||+++|||++..+...+...+..+++..++......+++.......+...+.
T Consensus 6 ~~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (150)
T TIGR00068 6 DLVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGN 85 (150)
T ss_pred ccccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCC
Confidence 34567788899999999999999999999999999998776555554445566665443334455554433323333455
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
+..|++|.|+|+++++++|.++|+++..+|...+++..+.+||+||+|+.|||++....
T Consensus 86 g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 78999999999999999999999998877766666655568899999999999987654
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.86 E-value=9.3e-21 Score=144.69 Aligned_cols=137 Identities=45% Similarity=0.789 Sum_probs=105.1
Q ss_pred CCCCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEE
Q 022818 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~ 228 (291)
....++.|+.|.|.|++++.+||+++|||++......++.++.+++++.+.......+++..+.+..+...+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 34568999999999999999999999999987655444444556666543332344566544333222234457899999
Q ss_pred EecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhhhhhhh
Q 022818 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~~~~~~ 289 (291)
.|+|+++++++| +++|+++..+|...+....+.+||+||+||+|||++....++.||
T Consensus 93 ~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 149 (150)
T TIGR00068 93 GVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLG 149 (150)
T ss_pred ecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhcc
Confidence 999999999999 999999988876555544578899999999999999999888887
No 10
>PLN02367 lactoylglutathione lyase
Probab=99.86 E-value=1.2e-20 Score=149.93 Aligned_cols=130 Identities=34% Similarity=0.605 Sum_probs=106.6
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCC---------------ceeEEEEeeecCcce
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE 216 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~~ 216 (291)
..+.|+.|.|.|++++++||+++|||++..+.+.+++++++++++++... ....|||+.+.+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 46899999999999999999999999999988888888999998753311 135789987765431
Q ss_pred ------eecC----cceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhhhh
Q 022818 217 ------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 217 ------~~~~----~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~~~ 286 (291)
+..+ .|+.||+|.|+|+++++++| +++|+++...|...++ .+++|++|||||+|||+|.....+
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~~ 227 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIGT 227 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccccc
Confidence 3333 48999999999999999999 9999999988775443 478999999999999999887654
Q ss_pred h
Q 022818 287 E 287 (291)
Q Consensus 287 ~ 287 (291)
-
T Consensus 228 ~ 228 (233)
T PLN02367 228 T 228 (233)
T ss_pred c
Confidence 3
No 11
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.86 E-value=3e-19 Score=142.05 Aligned_cols=194 Identities=21% Similarity=0.301 Sum_probs=133.0
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCC-CcccCCCCceEEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFA 97 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~~~i~ 97 (291)
+.-+.+..+.|.|+|++.+..||+++||+++..+.. ....+.+++. -.+.+.+.... .+.....|+.|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE---EEEEEEeCCCCCCCCccccceeeee
Confidence 345788999999999999999999999999987754 2456666543 23444443322 2223566999999
Q ss_pred EEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC------------------------
Q 022818 98 IATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT------------------------ 150 (291)
Q Consensus 98 ~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~------------------------ 150 (291)
|.+++ +.++..++.+.|+.+... . +.....-+||.||+||-||+....+.
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~Ga-~--DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLVGA-S--DHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccccc-C--cchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99975 778888999999876522 1 11222349999999999999987532
Q ss_pred ------------CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEe-eecCccee
Q 022818 151 ------------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELT-YNYGVTEY 217 (291)
Q Consensus 151 ------------~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~~~~ 217 (291)
...|.||.|.|.|++++.+||+++|||......+ ...|++.+.- +..+... ++......
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~Y--HHHia~N~W~s~~~~~ 225 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDY--HHHLAANTWNSRGARP 225 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCc--ceeEEEeccccCCCCC
Confidence 1248999999999999999999999999876621 3455664443 3333332 22111111
Q ss_pred --ecCcceeEEEEEecc
Q 022818 218 --TKGNAYAQVAISTDD 232 (291)
Q Consensus 218 --~~~~~~~hi~~~v~d 232 (291)
....|...+.+.+++
T Consensus 226 ~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 226 RNANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCCCcceEEEEcCC
Confidence 122366777777776
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.84 E-value=2.1e-19 Score=133.68 Aligned_cols=124 Identities=56% Similarity=1.006 Sum_probs=95.6
Q ss_pred EEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHHHH
Q 022818 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~~~ 107 (291)
+|.|+|++++++||+++|||++......++..+..+++..++......+++.......++..+.+..|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999988766656555667777655433344566654433333445668899999999999999
Q ss_pred HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCC
Q 022818 108 ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~~ 151 (291)
++|+++|+++..++...+++....++|+||||++|||++....+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 99999999988766666666555578899999999999977543
No 13
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=5.6e-19 Score=140.39 Aligned_cols=130 Identities=36% Similarity=0.664 Sum_probs=104.2
Q ss_pred CCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCC---------------cceEEEeeecC
Q 022818 18 KKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNY 82 (291)
Q Consensus 18 ~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~ 82 (291)
.+.--.+.|++|.|+|++++++||+++|||++..+..+++.++..+++.+++.. ....|++..+.
T Consensus 70 ~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~ 149 (233)
T PLN02367 70 ATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNW 149 (233)
T ss_pred CCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCC
Confidence 344567899999999999999999999999999998888888888888653311 13468888766
Q ss_pred CCCc------ccCC----CCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022818 83 GVTS------YDIG----TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 83 ~~~~------~~~g----~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~ 149 (291)
+... +..| .|++||||.|+|+++++++|+++|+++...|....+ ...++++||||++|||++...
T Consensus 150 g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 150 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 5431 3333 479999999999999999999999999887765443 335889999999999999764
No 14
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=9.6e-20 Score=135.53 Aligned_cols=122 Identities=50% Similarity=0.902 Sum_probs=92.9
Q ss_pred EeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhH
Q 022818 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~ 237 (291)
.|.|.|++++++||+++|||++......++..+.++++..++......+++..+.+......++++.|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987766555555677777654332344566654433333334568899999999999999
Q ss_pred HHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 238 EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 238 ~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
++| +++|+++..++...+++..+++||+|||||+|||++...
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999 999999887766555533467889999999999999764
No 15
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.83 E-value=1.6e-19 Score=135.48 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=95.1
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce------eecCcceeEEE
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQVA 227 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~hi~ 227 (291)
++|++|.|+|++++++||+++|||++......++ ....++. .+ ...+.+........ ...+++..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~--~g--~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLR--QG--DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEE--cC--CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5799999999999999999999999877654322 2233343 21 34555543222111 12456889999
Q ss_pred EEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhhhhhh
Q 022818 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~~~~~ 288 (291)
|.|+|+++++++| +++|++++.+|...++ +.+.++++||||++|||++++.+++++
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~~~ 130 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKGPF 130 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCCcc
Confidence 9999999999999 9999999999887555 568999999999999999999887764
No 16
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.82 E-value=2.1e-18 Score=134.48 Aligned_cols=129 Identities=35% Similarity=0.641 Sum_probs=98.4
Q ss_pred CCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCC---------------cceEEEeeecC
Q 022818 18 KKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNY 82 (291)
Q Consensus 18 ~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~ 82 (291)
++.=-++.|++|.|.|+++|++||+++|||++..+...++..+..+++..++.. ....+++..+.
T Consensus 22 ~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~ 101 (185)
T PLN03042 22 ATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNW 101 (185)
T ss_pred CCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcC
Confidence 445678999999999999999999999999998887777777777777643210 12357776544
Q ss_pred CCCc------cc----CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 83 GVTS------YD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 83 ~~~~------~~----~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
...+ +. .+.|+.|++|.|+|+++++++|+++|+.+...|....+ ..+++|+||+|++|||++..
T Consensus 102 ~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 102 GTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred CCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECC
Confidence 3221 22 12489999999999999999999999998876644322 34578899999999999865
No 17
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.82 E-value=4.7e-19 Score=138.19 Aligned_cols=129 Identities=32% Similarity=0.586 Sum_probs=100.1
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCC---------------ceeEEEEeeecCcc
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVT 215 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~ 215 (291)
..++.|+.|.|.|++++++||+++|||++..+...++.++++++++++... ....|||..+.+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 357999999999999999999999999998887766666788887643210 13478887654322
Q ss_pred e------ee----cCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhhh
Q 022818 216 E------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 216 ~------~~----~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~~ 285 (291)
. +. .+.|+.||+|.|+|+++++++| +++|+.+...|....+ .+++||+||||++|||++.+...
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~~ 178 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRIG 178 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCch
Confidence 1 11 1248899999999999999999 9999999877654322 46788999999999999987654
No 18
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.81 E-value=1e-19 Score=146.24 Aligned_cols=228 Identities=22% Similarity=0.358 Sum_probs=161.1
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCc--eeEEEEecCCCCcceEEEeeecCCC-----CcccCCC
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK--YSNAFLGFGPEQSHFVVELTYNYGV-----TSYDIGT 91 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~g~ 91 (291)
-.+.+++||.+.|.|...+..||+..|||+.....+...+. +....++ ++.+.|++.-..++.- .-..+|.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr--~g~~vFv~~s~~~p~~~~~G~~l~~Hgd 90 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALR--QGKIVFVFNSAYNPDNSEYGDHLVKHGD 90 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhh--cCCEEEEEecCCCCCchhhhhhhhhccc
Confidence 44889999999999999999999999999998765433221 1222233 3344555443333222 1223677
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCeecC--CCceEEEEEECCCCCEEEEEeCCCC-------------------
Q 022818 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLK--GGTTHIAFVKDPDGYIFELIQRGPT------------------- 150 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~Dp~G~~iel~~~~~~------------------- 150 (291)
++..+||+|+|++++.+.+.++|+++..+|.+.. .|..+++.+..+.-....+++...-
T Consensus 91 gvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~ 170 (381)
T KOG0638|consen 91 GVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPK 170 (381)
T ss_pred chhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCC
Confidence 8999999999999999999999999998876654 4666677777776555555555421
Q ss_pred -----CCCceEEEeeeC--ChhhhHHHHHHhcCCeeeeeeccCCc-----cceEEEeccccCCceeEEEEeeecCcc---
Q 022818 151 -----PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEY-----KYTLAMLGYAEEDQTTVLELTYNYGVT--- 215 (291)
Q Consensus 151 -----~~~~~~v~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~~--- 215 (291)
..+++|++.+++ .++.+.+||.+.|||.-.+.++.++- ..+.+.+.... .++.++.+.+.+
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~----esi~mpinEp~~G~k 246 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYE----ESIKMPINEPAPGKK 246 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCC----ccEEEeccCCCCCCc
Confidence 125899999998 68899999999999998777664432 12222233222 222333333332
Q ss_pred ---------eeecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCc
Q 022818 216 ---------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 216 ---------~~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~ 256 (291)
.+..|+|.+||++.++||-.+++.+ +++|.+++.+|.
T Consensus 247 ~ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps 292 (381)
T KOG0638|consen 247 KKSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPS 292 (381)
T ss_pred cHHHHHHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCH
Confidence 1457889999999999999999999 999999998874
No 19
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=2.7e-18 Score=129.90 Aligned_cols=123 Identities=20% Similarity=0.320 Sum_probs=89.2
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCC-----------CceeEEEEecCCCCcceEEEeeecCCC----C
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGV----T 85 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~----~ 85 (291)
+++++||+|.|+|++++++||++ |||++..+...++ .....+++...++ ...+++.....+ .
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDG--HSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCC--CceEEEEEecCCCCcCc
Confidence 57899999999999999999999 9999865543321 2234455543222 334454432111 1
Q ss_pred ---cccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 86 ---SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ---~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
....+.++.|+||.|+|+++++++|+++|+++..++....+|.+ .+||+||+|+.|||++.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r-~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYR-LCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeE-EEEEECCCCCEEEeeec
Confidence 11234578899999999999999999999998887666655544 48999999999999984
No 20
>PRK11478 putative lyase; Provisional
Probab=99.80 E-value=3e-18 Score=127.41 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=84.7
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC---CCcccCCCCceE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~~~~~ 95 (291)
..+++++||+|.|+|++++.+||+++|||++..+...+........+..++ ...+++..... ........++.|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG---QYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCC---CcEEEEEEecCCCCCCCCCCCCceeE
Confidence 467889999999999999999999999999864422211110111222222 22344432211 111112346889
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++|.|+|+++++++|+++|+++...+....+|. .++||+||+||.||+++.
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEeC
Confidence 999999999999999999999765433333454 458999999999999873
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.80 E-value=2.3e-18 Score=126.48 Aligned_cols=120 Identities=46% Similarity=0.781 Sum_probs=91.5
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCc-ceeecCcceeEEEEEecc
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~hi~~~v~d 232 (291)
+.|+.|.|+|++++.+||+++|||++......++.++..+++..+.......+++....+. .....+++..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999877655444445666666433112455666544332 122344578999999999
Q ss_pred hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
++++++++ +++|+++..+|... .+.+++||+||+||+|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 99999999 99999999887765 2458899999999999985
No 22
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=1.6e-18 Score=131.18 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=89.8
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCC-----------ccceEEEeccccCCceeEEEEeeecCcce----
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTE---- 216 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 216 (291)
.++.|++|.|+|++++.+||++ |||++..+....+ .+..+.++..+. ....+++.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcC
Confidence 4689999999999999999998 9998765432211 223445554322 245677765432211
Q ss_pred ---eecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 217 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ---~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
...+.++.||||.|+|+++++++| +++|+++..+|...+. +.+++||+||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 123457889999999999999999 9999999876655443 46889999999999999984
No 23
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.79 E-value=6.9e-18 Score=123.93 Aligned_cols=120 Identities=53% Similarity=0.952 Sum_probs=89.2
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCC-CcccCCCCceEEEEEeCC
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIATED 102 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~~~i~~~v~d 102 (291)
+.|+.|.|+|++++.+||+++||+++......+++.+..+++..++......+.+...... .+...+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999987665554455566676543102233444433222 223344578899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
+++++++++++|+++...|... + ..++++|+||+|++||++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 9999999999999998877655 3 334589999999999984
No 24
>PLN02300 lactoylglutathione lyase
Probab=99.79 E-value=3e-18 Score=144.58 Aligned_cols=131 Identities=47% Similarity=0.799 Sum_probs=101.8
Q ss_pred CCCCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEE
Q 022818 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~ 228 (291)
....++.|++|.|+|++++++||+++|||++..+...++..+...++..+++..+..+++....+......++++.|++|
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 34568999999999999999999999999987665544444555666544433455677755433333334568889999
Q ss_pred EecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
.|+|++++++++ +++|+++...|...++++.+++||+|||||.|||+++..
T Consensus 100 ~v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 100 AVEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred EeCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999999 999999988887776644578899999999999999754
No 25
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.78 E-value=1.8e-17 Score=124.34 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=89.7
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCC-Cc-----ccCCCCceEEE
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TS-----YDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-----~~~g~~~~~i~ 97 (291)
|+|+.|.|+|++++++||+++|||++..+....+ ....++..+ .. .+.+...... .. ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g--~~--~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQG--DI--NFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcC--CE--EEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999987654321 223334322 22 3333332211 10 12456789999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
|.|+|+++++++|+++|+++..+|...++|.+ .++++||+|++|+|++....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~-~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGELK-IAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeEE-EEEEeccCCcEEEEEecCCC
Confidence 99999999999999999999988888666554 58899999999999998755
No 26
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2.3e-17 Score=120.70 Aligned_cols=114 Identities=45% Similarity=0.818 Sum_probs=86.8
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCC-----------CceeEEEEecCCCCcceEEEeeecCCCCcccCCC
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT 91 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 91 (291)
++.|++|.|+|+++|++||+++|||++..+..+++ +.+..+++.+++....+.+++..+.+..++..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999887776665 3334455655434556788898877655555554
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
+ |++|.|++. ++.++|+++|+++...|. + ++++.||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 4 667777766 456999999998876543 2 5889999999999974
No 27
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=9.4e-18 Score=122.75 Aligned_cols=114 Identities=32% Similarity=0.580 Sum_probs=85.5
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCC-----------ccceEEEeccccCCceeEEEEeeecCcceeecCc
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN 221 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (291)
++.|++|.|+|+++|++||+++|||++..+...++ +.+.++++...++.....++|..+.+..++..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999877665554 3344455554333346789998877655555555
Q ss_pred ceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 222 ~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+ |++|.|++. ++.++| +++|+.+...|. .+++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 666666665 556888 999998876544 27899999999999985
No 28
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.2e-17 Score=121.82 Aligned_cols=122 Identities=27% Similarity=0.334 Sum_probs=84.6
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecC--CCC-cccCCCCceEEE
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY--GVT-SYDIGTGFGHFA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~g~~~~~i~ 97 (291)
+++++||+|.|+|++++++||+++|||+.......++.......+...+ .. .+++.... ... ....+.+..|++
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~--~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG-GY--QLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC-Cc--EEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 3689999999999999999999999999876543222211112232211 22 23332211 111 111345789999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
|.|+|+++++++|+++|+++...+....+|.. ++|++||+|++||++|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKR-FTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCceE-EEEEECCCCCEEEecC
Confidence 99999999999999999998776655555544 4899999999999975
No 29
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.1e-17 Score=122.00 Aligned_cols=119 Identities=27% Similarity=0.418 Sum_probs=85.1
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCc---ccCCCCceEEEEE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~g~~~~~i~~~ 99 (291)
+++|++|.|+|++++++||+++|||+...+...+...+...++.+++ ...+++........ .....+..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865433333333455665542 22344443222111 1123478999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
|+ ++++++++|+++|+++...|...++|... ++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEeC
Confidence 95 48999999999999988877666666554 67999999999973
No 30
>PRK11478 putative lyase; Provisional
Probab=99.77 E-value=1.3e-17 Score=123.93 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=83.1
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCC-ccceEEEeccccCCceeEEEEeeecCcce---eecCcceeEEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~hi~ 227 (291)
.++.|++|.|+|++++.+||+++|||++......++ ..+.. .+.... ...+++.....+.. .....++.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999764322221 11111 122111 34566644222111 12234788999
Q ss_pred EEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
|.|+|+++++++| +++|+++...+.. +..+.+++||+|||||.|||+|
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999 9999998644332 3334688999999999999987
No 31
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.76 E-value=3.9e-17 Score=122.98 Aligned_cols=118 Identities=21% Similarity=0.385 Sum_probs=87.0
Q ss_pred cceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022818 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~ 99 (291)
|+.+|.|+.|.|+|++++.+||+++||+++..+.. ...++..++ ..+.+...........+.+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 57899999999999999999999999999875422 234555432 22333222211111223467899999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 100 TE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
++ |+++++++|+++|+++...+....++.. .++++||+||+||+.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~-~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKK-SIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCce-EEEEECCCCCEEEEEeCC
Confidence 97 9999999999999998766655555554 489999999999999875
No 32
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=2.3e-17 Score=124.66 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=83.2
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccc-eEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEE
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~ 229 (291)
+.++.||+|.|+|++++.+||+++|||++..+...+++.. ...++..... ...+.+.. ..++++.|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec-------CCCCCceEEEEE
Confidence 4578999999999999999999999999876643322211 2233432222 23333321 113578999999
Q ss_pred ecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
|+|+++.. ++.++|+++|+++...|..+..++++++||+|||||+|||.+.
T Consensus 75 v~d~~~l~-~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVL-KAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHH-HHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99977642 2223349999998777765543345789999999999999865
No 33
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=2.2e-17 Score=121.85 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=83.2
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce---eecCcceeEEEEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~hi~~~ 229 (291)
++.|++|.|+|++++++||+++|||++......+..++...++..++ +..+++........ ....+++.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999765443333334444554332 34566654322111 1233578999999
Q ss_pred ecc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 230 TDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
|+| +++++++| +++|+++..+|...+. +.+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 965 67777777 9999999877754443 335578999999999983
No 34
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.76 E-value=2.2e-17 Score=127.40 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=86.7
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeee----cc--------------CCccceEEEeccccCCceeEEEEeeecC
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTV----DK--------------PEYKYTLAMLGYAEEDQTTVLELTYNYG 213 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 213 (291)
.+++||.|.|+|+++|++||+++|||++..+. .. ......+.++..++ +..|++.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 46899999999999999999999999875321 10 11124455555332 34467765443
Q ss_pred cce-e----ecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCcc-C-CCC-CceEEEEECCCCceEEEeechh
Q 022818 214 VTE-Y----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGS-I-PGL-NTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 214 ~~~-~----~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~-~-~~~-~~~~~~~~DpdG~~iel~~~~~ 283 (291)
+.. . ..+.|..|++|.|+|+++++++| +++|+++...+.. . ++. ..+++|++|||||.|||+++..
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 221 1 12458899999999999999999 9999876443211 1 111 1278999999999999998864
No 35
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=9.1e-18 Score=128.40 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=86.5
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccC-CccceEEEeccccCCc---eeEEEEeeecCcceeecCcceeEEEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEEDQ---TTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~hi~~ 228 (291)
++.||+|.|+|++++++||+++||+++......+ .......++..+.+.. ...+.+.. ..++++.||||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5789999999999999999999999987654433 2223455555322100 11111111 12468999999
Q ss_pred EecchHHhH---HHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 229 STDDVYKSA---EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 229 ~v~di~~~~---~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
.|+|++++. ++| +++|+++...|...+.+...++|++||+||+|||.....
T Consensus 74 ~v~die~~~~~~~~L----~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 74 EVHDFDAQGLGHDYL----REKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred EcCCHHHHHHHHHHH----HHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 999988876 677 999999988887766544567899999999999997654
No 36
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.75 E-value=7.8e-17 Score=124.36 Aligned_cols=127 Identities=30% Similarity=0.352 Sum_probs=86.2
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEe----ec--------------CCCceeEEEEecCCCCcceEEEeeecC
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR----DV--------------PEEKYSNAFLGFGPEQSHFVVELTYNY 82 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (291)
.++++||+|.|+|+++|++||+++|||++..+. .. ....+...++..++ ...+++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 367999999999999999999999999875321 10 01124455665443 2224444432
Q ss_pred CCC-cc----cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCC-eec-CC-CceEEEEEECCCCCEEEEEeCCCC
Q 022818 83 GVT-SY----DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPL-KG-GTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 83 ~~~-~~----~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~-~~~-~~-g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
... +. ..+.|..|+||.|+|+++++++|+++|+++...+ ... ++ ...+++|++|||||+|||++...+
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 211 11 1246899999999999999999999998754332 211 11 123468999999999999998643
No 37
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=3.2e-17 Score=125.40 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=86.6
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecC-CCceeEEEEecCCCCcc---eEEEeeecCCCCcccCCCCceEEEE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSH---FVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
+|+||+|.|+|++++++||+++||+++..+...+ .......++..++.... ..+.+.. ..+.+++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5799999999999999999999999987654433 22334566665332110 0011111 11458999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATEDVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
.|+|++++. ++|+++|+++...+.....|...++|++||+||.||+....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 99999999988766655545555689999999999998765
No 38
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=1.1e-16 Score=120.98 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=84.1
Q ss_pred cceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCce-eEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
.+++|+|++|.|+|++++.+||+++|||++..+...+++.. ...|+..+. ..+ .+.+... .+.+++|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~~h-~~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-KPH-DIAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-Ccc-eEEEecC-------CCCCceEEEE
Confidence 47789999999999999999999999999876643322222 234554332 222 2333221 1347899999
Q ss_pred EeCCHHH---HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 99 ATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 99 ~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
.|+|+++ +.++|+++|+++...|.....+...++||+||+||.|||...
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999777 678999999998766544332233358999999999999764
No 39
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.75 E-value=7.7e-17 Score=118.63 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=83.2
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v 100 (291)
+++|+|+.|.|+|++++.+||+++|||++....+ ++ .+++..........+.+... ...+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6799999999999999999999999999875532 11 23444322122233333211 133678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
. |+++++++|+++|+++...|.....+....+||+||+||+||+....
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 6 79999999999999987655443333333589999999999998754
No 40
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=4.9e-17 Score=121.68 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=86.5
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v 230 (291)
+.++.|+.|.|.|++++.+||+++||+++..... . ...++..+....+..+.+..... ...++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 4578999999999999999999999999765532 1 22344432212244555533211 136889999999
Q ss_pred cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
+|+++..+ +.++|+++|+++...|...+..+.+++||+||+||+|||.....
T Consensus 71 ~d~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 71 GDIDEVML-GGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CCHHHHHH-HHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 99776654 22333999999887777766544567899999999999986544
No 41
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.74 E-value=5.6e-17 Score=119.60 Aligned_cols=120 Identities=24% Similarity=0.302 Sum_probs=84.5
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCC-ccceEEEeccccCCceeEEEEeeecCcc---eeecCcceeEEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVT---EYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~hi~ 227 (291)
.++.|++|.|.|++++.+||+++|||+.......++ ..+. +.+.... ...+++....... ....+.+..|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999875533222 2222 2222111 2344443322111 112345788999
Q ss_pred EEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
|.|+|++++.+++ +++|+++...+....+ +.+++|++||+||+|||+|
T Consensus 78 ~~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHL----KAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHH----HHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 9999999999999 9999998776544333 4578999999999999976
No 42
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.74 E-value=2.7e-16 Score=129.17 Aligned_cols=229 Identities=17% Similarity=0.238 Sum_probs=151.5
Q ss_pred CCCCCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcc--cCCCC
Q 022818 15 EWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTG 92 (291)
Q Consensus 15 ~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~g~~ 92 (291)
.+| ...+++++|.+.|.|.+.+..-|-..|||....+..... ...++ .++..+++.-...+....+ .+|++
T Consensus 15 ~~P-~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk~----v~l~r--QGdinlvvn~~~~s~a~~f~~~Hgps 87 (363)
T COG3185 15 ANP-EGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSKA----VTLYR--QGDINLVVNAEPDSFAAEFLDKHGPS 87 (363)
T ss_pred cCC-CCCCceeEEEEecCCHHHHHHHHHHHhCccccccccccc----eeEEE--eCCEEEEEcCCCcchhhHHHHhcCCc
Confidence 444 348999999999999954444444559999987655432 22233 2355666544333323333 37889
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCeeecCCe-----ecC---CCceEEEEEECCCC--CEE--EEEeC--C--CC---CCC
Q 022818 93 FGHFAIATEDVYKLVENIRAKGGNVTREPG-----PLK---GGTTHIAFVKDPDG--YIF--ELIQR--G--PT---PEP 153 (291)
Q Consensus 93 ~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~-----~~~---~g~~~~~~~~Dp~G--~~i--el~~~--~--~~---~~~ 153 (291)
.+.++|+|+|...++++..+.|++....+. +.+ +-....+||.|.+| ..+ ++... . +. ...
T Consensus 88 ~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~ 167 (363)
T COG3185 88 ACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTA 167 (363)
T ss_pred hheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCcee
Confidence 999999999999999999999996443322 111 11122488888773 222 12222 1 11 136
Q ss_pred ceEEEeee--CChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce---------eecCcc
Q 022818 154 LCQVMLRV--GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---------YTKGNA 222 (291)
Q Consensus 154 ~~~v~l~v--~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---------~~~~~~ 222 (291)
|+|++..| ..++.+..||+++|+|+.....+.++..-.+..-...+. +..+.++.+.+... ...|.|
T Consensus 168 IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp--~G~vrlplN~s~~~~sqi~efl~~y~G~G 245 (363)
T COG3185 168 IDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSP--CGKVRLPLNESADDKSQIGEFLREYRGEG 245 (363)
T ss_pred echhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecC--CCcEEeecccCCCchhHHHHHHHHhCCCc
Confidence 89998777 789999999999999999888776554222222222233 33455554544332 226789
Q ss_pred eeEEEEEecchHHhHHHHHHHHHHhCCeeecCCc
Q 022818 223 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 223 ~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~ 256 (291)
++||||.++||.++++++ +++|++++..|.
T Consensus 246 IQHIA~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 246 IQHIAFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred ceEEEecccHHHHHHHHH----HHcCCccCCCch
Confidence 999999999999999999 999999988774
No 43
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.73 E-value=3.1e-17 Score=121.69 Aligned_cols=119 Identities=30% Similarity=0.505 Sum_probs=85.8
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC-CC---cc--cCCCCceEE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-VT---SY--DIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---~~--~~g~~~~~i 96 (291)
+|+|+.|.|+|++++.+||+++|||+.......++.....+++..++. .+++..... .. .+ ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNT----KVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCE----EEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 579999999999999999999999998765444443445666655432 233332211 11 11 124578899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CeecCCCceEEEEE--ECCCCCEEEEEe
Q 022818 97 AIATEDVYKLVENIRAKGGNVTRE-PGPLKGGTTHIAFV--KDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~Dp~G~~iel~~ 146 (291)
||.|+|+++++++|.++|+++..+ |....+|... .++ +||||++||+++
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~-~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPV-AFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEE-EEecccccCcEEEEecC
Confidence 999999999999999999998764 5565666543 566 799999999975
No 44
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.73 E-value=1.5e-16 Score=122.78 Aligned_cols=122 Identities=21% Similarity=0.229 Sum_probs=79.5
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v 230 (291)
|.++.|++|.|+|++++++||+++|||++......+++.....++..... ...+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEec-------CCCCceeEEEEEc
Confidence 46799999999999999999999999997654433222222333432221 23333321 1245789999999
Q ss_pred cchHHhHHHHHHHHHHhCCe--eecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 231 DDVYKSAEVVNLVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
+|.++ ++++.++|+++|+. +...|......+.+++||+|||||.|||++..
T Consensus 72 ~~~~~-v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHN-IIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHH-HHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 87332 33333444999986 33344443323346799999999999998654
No 45
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.5e-16 Score=116.77 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=81.5
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeee----cCCCCcccCCCCceEEE
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY----NYGVTSYDIGTGFGHFA 97 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~g~~~~~i~ 97 (291)
+++.|+.|.|+|++++++||+++||+++....+ . ...+. ++ +.+.... .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE-GG----FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe-cc----ceeccchhhhccCCcccccccCCceEEE
Confidence 478999999999999999999999999864321 1 11121 11 1111100 01111122334567999
Q ss_pred EEeCCHHHHHHHHHHcCC-eeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 98 IATEDVYKLVENIRAKGG-NVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
|.|+|+++++++|+++|+ ++..+|...++|.+. ++|+|||||+|++.+.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 999999999999999986 688888888887765 8999999999999875
No 46
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.73 E-value=7.7e-17 Score=119.53 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=85.4
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce------eecCcceeEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~hi 226 (291)
++.|+.|.|+|++++++||+++|||++.......+......++..+ ...+++....+... ...+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 5789999999999999999999999987554333333455555432 24556644322111 0124577899
Q ss_pred EEEecchHHhHHHHHHHHHHhCCeeecC-CccCCCCCceEEEE--ECCCCceEEEee
Q 022818 227 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGSIPGLNTKITSF--VDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~-~~~~~~~~~~~~~~--~DpdG~~iel~~ 280 (291)
+|.|+|+++++++| +++|+++..+ |...++ +.+..|+ +||||++|||+|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999 9999998764 444444 4466677 799999999975
No 47
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=2.7e-16 Score=117.68 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=85.4
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
++++|+.|.|+|++++.+||+++||+++..... . ...++..++...+..+.+..... ...++.|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 579999999999999999999999999875532 1 23455543222233444433221 1358999999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
|++++. ++|+++|+++...|...+.+...++||+||+|++|||....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 887665 69999999987666555545455589999999999999654
No 48
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.73 E-value=1.8e-16 Score=115.20 Aligned_cols=114 Identities=25% Similarity=0.267 Sum_probs=83.4
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecch
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di 233 (291)
+.|+.|.|+|++++++||+++||+++..... ....+ .++..+. ...+.+....+.. ..+.+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999765443 22223 3333222 1222222222111 1234668999999999
Q ss_pred HHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+++.++| +++|+++..+|...++ +++.+|++|||||.|+|+|
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999 9999999988887775 4589999999999999975
No 49
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.72 E-value=2.6e-16 Score=120.49 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=87.4
Q ss_pred CCCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccC---CccceEEEeccccCCceeEEEEeeecCcceeecCcceeEE
Q 022818 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP---EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi 226 (291)
.++++.|+.|.|+|++++.+||+++|||++....... +....+.++..+.. +..+.+... ..++++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcC------CCCceeEEE
Confidence 3578999999999999999999999999976543221 11234555553222 233443221 123578999
Q ss_pred EEEecchH---HhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 227 AISTDDVY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 227 ~~~v~di~---~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
+|.|+|++ ++.++| +++|+++..+|...+..+.+.+|++||+||+|||.....
T Consensus 78 af~V~d~~~l~~~~~~L----~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRV----RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99998754 356666 999999988887766555688999999999999986643
No 50
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.72 E-value=1.9e-16 Score=116.55 Aligned_cols=116 Identities=22% Similarity=0.186 Sum_probs=80.4
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v 230 (291)
..++.|+.|.|+|++++.+||+++|||++..... +. ..+ +..........+.+.. ...++..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~~-~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RVY-LKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eEE-EEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3578999999999999999999999999765431 11 222 2211111233344421 1234678999999
Q ss_pred c---chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 231 D---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~---di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
+ |++++.++| +++|+++...|.....+.++.+||+|||||+|||.+..
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 8 566666677 99999987766443332347899999999999998754
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.72 E-value=8.5e-17 Score=119.02 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=84.7
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeec--CCCceeEEEEecCCCCcceEEEeeecCCCCcccC---CCCceEEE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV--PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI---GTGFGHFA 97 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---g~~~~~i~ 97 (291)
+|+||+|.|+|++++++||+++|||++...... ........++..+.. .+.+............. +.+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999987662 222334455554433 33333322222211111 01445666
Q ss_pred EEe---CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022818 98 IAT---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel 144 (291)
+.+ +|+++++++|+++|+++..+|....++...++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 665 57888999999999999988877777777656899999999997
No 52
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=2.6e-16 Score=118.41 Aligned_cols=113 Identities=13% Similarity=0.222 Sum_probs=82.0
Q ss_pred eEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchH
Q 022818 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~ 234 (291)
.||.|.|+|++++.+||+++|||++..+... ..+++.......+..+.+.. ....++.|++|.|+|++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998766421 23445432222233333211 13458999999998744
Q ss_pred ---HhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 235 ---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
+++++| +++|+++...|...+..+.+++||+||+|+.|||+....
T Consensus 69 ~v~~~~~~l----~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRI----KAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHH----HHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 445555 999999988888766555688999999999999986543
No 53
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.71 E-value=7e-16 Score=118.12 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=87.6
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecC---CCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 95 (291)
+.-++|+||.|.|+|++++.+||+++||+++....... +......++..++. +..+.+.... .+.++.|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~------~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEGP------GPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcCC------CCceeEE
Confidence 34678999999999999999999999999986643321 11234555655332 2223332211 1347899
Q ss_pred EEEEeCCHH---HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 96 FAIATEDVY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 96 i~~~v~d~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
++|.|+|.+ +++++|+++|+++...+...+.+....+|++||+|+.|||....
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 999998754 68999999999988776655554445599999999999998765
No 54
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.71 E-value=9e-16 Score=118.92 Aligned_cols=124 Identities=22% Similarity=0.291 Sum_probs=86.8
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
+.+.+|+|++|.|+|++++.+||+++|||++........+.....++...+... .+.+..... ....++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVH--DVAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCce--eEEEecCCC----CCCCCceEEEE
Confidence 458899999999999999999999999999876543332222345555432222 222222111 11236789999
Q ss_pred EeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|+++...|.....+...++|++||+||+||+....
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9986 5578899999999987666554443444588999999999999873
No 55
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=3.5e-16 Score=115.38 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=83.1
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
.++.+|.|+.|.|+|++++.+||+++|||++..+.. ...++..++. +..+.+.... ++..|++|
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf 65 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGF 65 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEE
Confidence 468999999999999999999999999999865422 1345654432 2223333211 25678999
Q ss_pred EeCC---HHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATED---VYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
+|++ +++++++|+++|+++...+... ..+...+++|+|||||.||+....
T Consensus 66 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 66 ELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 9975 9999999999999876654321 123344589999999999998654
No 56
>PRK06724 hypothetical protein; Provisional
Probab=99.70 E-value=7.3e-16 Score=113.93 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=78.4
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhc---CCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 95 (291)
.|+.+|+||.|.|+|+++|++||+++| |++.........+ ...+ .+...... .....+..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g------------~~~l--~l~~~~~~--~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG------------ESEI--YFKEVDEE--IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC------------CeeE--EEecCCcc--ccCCCCcee
Confidence 467899999999999999999999966 6665321111111 1111 11111110 012346789
Q ss_pred EEEEe---CCHHHHHHHHHHcCCeeecCCeecCC--CceEEEEEECCCCCEEEEEeCC
Q 022818 96 FAIAT---EDVYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 96 i~~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
+||.| +++++++++|+++|+++...|...+. ++.+.++|+|||||.||+....
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 99998 78999999999999998877765431 2334588999999999998774
No 57
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.70 E-value=7.5e-16 Score=113.16 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=81.8
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
+.+++|+|+.|.|+|++++.+||+++||+++..+.+ ..+++...+......+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 358899999999999999999999999999876532 134454322212233333322 1247889999
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
.|+ ++++++++++++|+++...+.....+ . .+||+||+||.+|+....
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~-~-~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGHG-K-AYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCCc-c-eEEEECCCCCEEEEEEec
Confidence 996 58899999999999874432222222 2 489999999999998643
No 58
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.70 E-value=7.6e-16 Score=111.83 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=82.4
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCH
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~ 103 (291)
+.|+.|.|+|++++++||+++||+++..... ... ...++..++. ..+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG---AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc---cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865442 112 2334444321 112222221111 1233567899999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
++++++|+++|+++..+|...+++.. .++++||+||.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGR-FAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEE-EEEEECCCCCEEEeEC
Confidence 99999999999999888877765544 5999999999999975
No 59
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=3.3e-16 Score=114.38 Aligned_cols=117 Identities=23% Similarity=0.327 Sum_probs=84.5
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce--eecCcceeEEEEEecch
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDDV 233 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~hi~~~v~di 233 (291)
||.|.|.|++++.+||+++|||++.......+ +..++.+..... ....+.+........ ...+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999887654222 234444442221 134455443322211 12345778999999999
Q ss_pred HHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+++.+++ +++|+++..+|...++ ++.+|++||+||+|||+|
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 9999999 9999999988844433 589999999999999975
No 60
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.70 E-value=4.8e-16 Score=117.03 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=84.4
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++||+++..... ...++..+ +..+.+......+....+.++.|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999764321 22333321 24444432221111112346789999998
Q ss_pred --chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 232 --DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
|++++++++ +++|+++...|...+. +++.+||+|||||+|||.+...
T Consensus 73 ~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 73 EEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred HHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCCH
Confidence 888888888 9999998877766554 4589999999999999997654
No 61
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=6.8e-16 Score=113.76 Aligned_cols=118 Identities=30% Similarity=0.501 Sum_probs=84.0
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC---CCcccCCCCceEEE
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGHFA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~~~~~i~ 97 (291)
+++|+|+.|.|+|++++++||+++||++.....+... ...+..++ ..+.+..... ......+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~----~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVG----RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccCC----ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 4689999999999999999999999999876543211 23344332 1233332211 11222446789999
Q ss_pred EEeCC-HHHHHHHHHHcCCeeecCCeecCC--CceEEEEEECCCCCEEEEEe
Q 022818 98 IATED-VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d-~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~Dp~G~~iel~~ 146 (291)
|.+++ +++++++|+++|+++...|....+ +....++|+||+||++|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998876654322 22345899999999999986
No 62
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=3.7e-16 Score=114.60 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=80.1
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEee----ecCcceeecCcceeEEEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTY----NYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~hi~~ 228 (291)
++.++.|.|+|++++++||+++|||++....+ . . ..+ . . ...+.+.. .....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~~-~--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VTF-E--G---GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EEE-e--c---cceeccchhhhccCCcccccccCCceEEEE
Confidence 57789999999999999999999999764321 1 1 111 1 0 11111100 000111123345579999
Q ss_pred EecchHHhHHHHHHHHHHhCC-eeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 229 STDDVYKSAEVVNLVTQELGG-KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
.|+|+++++++| +++|+ ++..+|...++ |.+.++|+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 99986 78888888776 46899999999999999874
No 63
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.70 E-value=1.3e-15 Score=113.51 Aligned_cols=117 Identities=26% Similarity=0.387 Sum_probs=86.5
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHH
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~ 104 (291)
+||.|.|+|++++++||+++||++.......+ +....+++..++. ...+.+..... ..+..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~~------~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGPE------RPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCCC------CCCeeEEEEEcCCHH
Confidence 59999999999999999999999987665433 3234566665432 22333332211 347899999999864
Q ss_pred ---HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 105 ---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
+++++|+++|+++...|...+.+..++++|+||+|++|||.+..+.
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 7889999999998877665554444558999999999999987643
No 64
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=1.8e-15 Score=111.28 Aligned_cols=117 Identities=22% Similarity=0.283 Sum_probs=84.5
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCC--cccCCCCceEEEEEeCCHH
Q 022818 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~~~~~i~~~v~d~~ 104 (291)
-.|.|+|++++++||+++||++........++......+..++ ..+.+......... ....+.+..+++|.|+|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHH
Confidence 4689999999999999999999987654334433344455543 22333221111110 0113346679999999999
Q ss_pred HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
+++++++++|+++..+|...++|... ++++||+||+|+|.+
T Consensus 81 ~~~~~l~~~G~~v~~~~~~~~~g~~~-~~~~DPdG~~~~l~~ 121 (122)
T cd08355 81 AHYERARAAGAEILREPTDTPYGSRE-FTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHCCCEEeeCccccCCCcEE-EEEECCCCCEEEEec
Confidence 99999999999999888888887654 889999999999975
No 65
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.1e-15 Score=111.66 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=82.5
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCC--cccCCCCceEEEEEeCCH
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~~~~~i~~~v~d~ 103 (291)
||.|.|+|++++.+||+++|||++..+....+ ......+...+. ....+.+....... ....+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654222 223333332221 13334443332221 112344678999999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
++++++|+++|+++..++....++ +.++++||+||+|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999998877444443 34899999999999974
No 66
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.69 E-value=8.2e-16 Score=112.92 Aligned_cols=116 Identities=25% Similarity=0.306 Sum_probs=82.2
Q ss_pred cceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022818 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~ 99 (291)
+++++.|+.|.|+|++++.+||+++||+++..... + .+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD---D---RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC---C---eEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 46899999999999999999999999999865422 1 23343211112222333221 12368899999
Q ss_pred e---CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 100 T---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
| +|+++++++++++|+++...|.....+....+++.||+||+||++...
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 9 579999999999999887654433333334589999999999998653
No 67
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=1.8e-15 Score=112.66 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=81.9
Q ss_pred cceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCc-eeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
|+.+|+|+.|.|+|++++.+||+++||+....+....... ....++..++ ..+.+...... ...+.+|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEE
Confidence 5789999999999999999999999999876553221100 0111222222 12333322111 1236889999
Q ss_pred EeC--CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
.|+ +++++.++|+++|+++..+. ...++..+.+||+||+||.|||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 997 79999999999999876432 33333334599999999999998654
No 68
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.69 E-value=7.9e-16 Score=114.61 Aligned_cols=114 Identities=23% Similarity=0.377 Sum_probs=80.6
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCC-
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED- 102 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d- 102 (291)
|+||.|.|+|++++.+||+++||+++....+ ...++..++ . .+.+.............+..|++|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG--T--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc--e--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999865322 123444432 2 2333222211111123468899999974
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 103 -VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
+++++++|+++|+++..++....++.. .+||+||+||+||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 999999999999997665544444444 489999999999998765
No 69
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=1.6e-15 Score=111.50 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=83.1
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce----eecCcceeEEEEEecc
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YTKGNAYAQVAISTDD 232 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~hi~~~v~d 232 (291)
-.|.|+|++++++||+++||+++......+++......+..++ ..+.+........ ....++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 4689999999999999999999876654333332233333221 2333332221111 1133466899999999
Q ss_pred hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
++++++++ +++|+++..+|...++ |.+.++++|||||+|+|.+
T Consensus 79 ~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 99999999 9999999999888776 4688999999999999975
No 70
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.69 E-value=5.6e-16 Score=115.42 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=80.8
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecc-
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD- 232 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~d- 232 (291)
|.||.|.|+|++++.+||+++|||++..... . . ..+..+ +..+.+....+.+......++.|++|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~--~--~--~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE--K--T--AYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC--c--c--ceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 5799999999999999999999999764311 1 1 122221 244544332221111223477899999975
Q ss_pred -hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhh
Q 022818 233 -VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~ 284 (291)
+++++++| +++|+++..++...+. +++.+||+|||||+|||.+....
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~~ 118 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTLA 118 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcHH
Confidence 77777777 9999998765544333 35889999999999999987653
No 71
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.68 E-value=2.7e-15 Score=115.77 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=80.0
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
++|+||.|.|+|++++++||+++|||++......+.+.....++..++. ...+.+... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEecC-------CCCceeEEEEEcC
Confidence 5899999999999999999999999998754433223223344433221 122322211 2347899999997
Q ss_pred C---HHHHHHHHHHcCCee--ecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 102 D---VYKLVENIRAKGGNV--TREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.. ...|.....+...++|++||+||.||+++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 778889999999863 2233322222233589999999999998654
No 72
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=1.1e-15 Score=113.15 Aligned_cols=119 Identities=22% Similarity=0.329 Sum_probs=86.1
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccC-CccceEEEeccccCCceeEEEEeeecCcce------eecCcceeEE
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQV 226 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~hi 226 (291)
+.||.|.|+|++++.+||+++|||++....... +......++..+ ...+++..+..... ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987655432 233445555532 45566655432211 1245688999
Q ss_pred EEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCC--CceEEEee
Q 022818 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD--GWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~Dpd--G~~iel~~ 280 (291)
+|.|+|++++++++ +++|+++..+|...+.++.++.++.||+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999999 9999999888775444343445455555 99999985
No 73
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=2.2e-15 Score=115.49 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=82.1
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCc-ccCCCCceEEEEEeC
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATE 101 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~i~~~v~ 101 (291)
+|+||.|.|+|++++.+||+++|||++..+.. + ...++..+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57999999999999999999999999976543 1 223333221 2234455544322111 112346889999998
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 102 D---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+++.. +... +..+.+||+||+|+.||++...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999997543 2222 2334589999999999999874
No 74
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.68 E-value=2.5e-16 Score=116.43 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=80.0
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeecc--CCccceEEEeccccCCceeEEEEeeecCcceeec---CcceeEEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDK--PEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK---GNAYAQVA 227 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~hi~ 227 (291)
++.|++|.|+|++++.+||+++|||++...... .........+..+. ....+......+...... ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 478999999999999999999999999887662 22223344444322 233333322222211111 01345777
Q ss_pred EEec---chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEE
Q 022818 228 ISTD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 ~~v~---di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel 278 (291)
+.+. |++++.++| ++.|+++..+|.........++|++||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 7766 455566666 9999999999887776554556899999999997
No 75
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.68 E-value=1.2e-15 Score=115.33 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=82.1
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|+.|.|.|++++++||+++|||++..... + ...++..+.. ...+.+.. ...+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~--~~~~~l~~-------~~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD--HHSIAIAR-------GPHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC--cceEEEcc-------CCCCceEEEEEECC
Confidence 468999999999999999999999999764421 1 2233443332 33444422 11357889999999
Q ss_pred chHHhH---HHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 232 DVYKSA---EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~---~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
|++++. ++| +++|+++...|.....+..+++||+||+||.|||++...
T Consensus 69 d~~~l~~~~~~l----~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRM----IDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHH----HHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 977765 556 999999887765543333577899999999999998754
No 76
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.68 E-value=1.4e-15 Score=111.72 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=77.1
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v 230 (291)
..++.|+.|.|+|++++.+||+++||+++..+.+ ...++..........+.+.. ...++..|++|.+
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 3578999999999999999999999999876532 12233322211233444432 1235788999999
Q ss_pred cc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
++ ++++.+++ +++|+++...+.. +. .+..+||+|||||+|||...
T Consensus 71 ~~~~~v~~~~~~l----~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 71 SSPEALERRVAAL----EASGLGIGWIEGD-PG-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred CCHHHHHHHHHHH----HHcCCccccccCC-CC-CcceEEEECCCCCEEEEEEe
Confidence 85 55555566 9999987433332 22 24678999999999999864
No 77
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=1.9e-15 Score=112.64 Aligned_cols=116 Identities=25% Similarity=0.304 Sum_probs=84.0
Q ss_pred eEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchH
Q 022818 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~ 234 (291)
.||.|.|+|++++++||+++||+++......+ +.....++..+.. ...+.+.... ..+++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 48999999999999999999999986554322 2223444443222 3344443211 1457899999999864
Q ss_pred ---HhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 235 ---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
++++++ +++|+++..+|...+.++.++++|+||+||+|||++...
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 455666 999999988877666544678999999999999997654
No 78
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.5e-15 Score=110.89 Aligned_cols=117 Identities=23% Similarity=0.326 Sum_probs=80.6
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeee---cC---C--CCcccCCCCceE
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY---NY---G--VTSYDIGTGFGH 95 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~---~--~~~~~~g~~~~~ 95 (291)
+.|+.|.|+|++++.+||+++|||+...... .+.+ ..+..++ ..+.+.... .. . ........+..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETGE--TTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCCc--EEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999865332 1111 1122221 111111110 00 0 001112234568
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++|.|+|+++++++++++|+++..+|...++|... ++++||+||.+++++.
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTV-AYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEE-EEEECCCCCEEEEecC
Confidence 99999999999999999999998888888887764 8999999999999863
No 79
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=3e-15 Score=110.27 Aligned_cols=112 Identities=19% Similarity=0.308 Sum_probs=80.9
Q ss_pred cceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022818 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~ 99 (291)
|..++.|+.|.|+|++++++||+++||++..... +. ..++..++ ...+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GP--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CC--EEEEEcCC---CcEEEEecCC------CCCCcceEEEE
Confidence 3578999999999999999999999999986532 11 22233222 1234333321 11245789988
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeec-------CCCceEEEEEECCCCCEEEEEeC
Q 022818 100 TE--DVYKLVENIRAKGGNVTREPGPL-------KGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++ |+++++++|+++|+++...|... .+|.+ .++|+||+||.|||++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGR-GVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCee-EEEEECCCCCEEEEEec
Confidence 86 69999999999999987766543 34444 59999999999999986
No 80
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.67 E-value=3.3e-15 Score=108.88 Aligned_cols=111 Identities=26% Similarity=0.431 Sum_probs=84.5
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
++++|+.|.|+|++++.+||+++|||++..+.+ ...++..+. ...+.+.+.... ..+..|++|.|.
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 579999999999999999999999999986542 235555442 223334333321 236789999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++++++++++++|+++...+...+++.. .+++.||+||++|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEc
Confidence 6899999999999998877665555544 48999999999999865
No 81
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=5e-15 Score=109.31 Aligned_cols=117 Identities=26% Similarity=0.401 Sum_probs=83.5
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCC-CcccCCCCceEEEEEe
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIAT 100 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~~~i~~~v 100 (291)
++|+||.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 579999999999999999999999999986521 134555443 2233444433222 1122345788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022818 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~ 149 (291)
+ ++++++++|.++|+++..+ ..... ...+|++||+||++|+....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecC
Confidence 7 4899999999999987543 22222 235899999999999987654
No 82
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=1.4e-15 Score=116.51 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=81.9
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce-eecCcceeEEEEEec
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~hi~~~v~ 231 (291)
++.||+|.|+|++++.+||+++|||++..... . .+.+...+. ..+..|.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47899999999999999999999999876543 1 222222211 1245666655322211 122347889999999
Q ss_pred c---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 232 D---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
| +++++++| +++|+++. .+....+ .+.+||+||+||+|||++..
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 77777777 99999864 3333322 47899999999999999865
No 83
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.67 E-value=2e-15 Score=116.97 Aligned_cols=120 Identities=20% Similarity=0.197 Sum_probs=82.4
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|++|.|+|++++.+||+++|||++......+.+.....++..... ...+.+.. ... ...+++.|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~--~~~--~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTR--DPA--GARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEec--CCC--CCCCCceEEEEECC
Confidence 4689999999999999999999999998765433322222334433221 22333322 111 12246789999998
Q ss_pred chH---HhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 232 DVY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~---~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
|++ +++++| +++|+++...|.........++|++||+||+|||++.
T Consensus 79 ~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 744 555566 9999998777766544334569999999999999987
No 84
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=3.1e-15 Score=109.85 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=84.3
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcc--eeecCcceeEEEEEecchH
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~hi~~~v~di~ 234 (291)
..|.|.|++++.+||+++||+++......+++......+..++ ..+.+....+.. ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4589999999999999999999877655444433344344222 244444322110 1123346789999999999
Q ss_pred HhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
++++++ ++.|+++..+|...++ +.+.++++||+||+|+|++
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 999999 9999999988876665 5689999999999999987
No 85
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=2.1e-15 Score=111.11 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=82.7
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCc---ceeecCcceeEEEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV---TEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~hi~~ 228 (291)
.++.|+.|.|.|++++++||+++|||+.....+.. .+..+..+ + ..+++...... .....+++..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~--~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFG--S----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeC--C----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 36899999999999999999999999977543221 12222222 1 34444332211 11123457889999
Q ss_pred Eecc-hHHhHHHHHHHHHHhCCeeecCCccCCC--CCceEEEEECCCCceEEEee
Q 022818 229 STDD-VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~d-i~~~~~~l~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~DpdG~~iel~~ 280 (291)
.+++ ++++++++ +++|+++...|...++ +.++.+||+|||||+|||++
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 88888888 9999998877765432 23478999999999999986
No 86
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=4.7e-15 Score=108.86 Aligned_cols=116 Identities=21% Similarity=0.207 Sum_probs=85.2
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC-CC-cccCCCCceEEEEEeCCHH
Q 022818 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-VT-SYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~g~~~~~i~~~v~d~~ 104 (291)
+.|.|+|++++.+||+++||++.......+++......+..++. . +.+..... .. ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDS--V--LMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCE--E--EEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 46899999999999999999999876654444444445555432 2 22322211 11 1113346779999999999
Q ss_pred HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++++++.+.|+++..+|...++|.+. ++++||+|++|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDRY-GGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccceE-EEEECCCCCEEEEecC
Confidence 99999999999998888777777654 8999999999999863
No 87
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.67 E-value=1.8e-15 Score=110.95 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=78.6
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecc
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~d 232 (291)
++.||.|.|+|+++|.+||+++|||++..+.. .. ..++..++. +..+.+... ..++..|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~~--~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DG--ALYLRMDDR--AWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---CC--eEEEEccCC--ceEEEEEeC-------CCCceeEEEEEECC
Confidence 58899999999999999999999999764421 11 223332222 444554321 12467899999975
Q ss_pred ---hHHhHHHHHHHHHHhCCeeecCCcc--CCCCCceEEEEECCCCceEEEeech
Q 022818 233 ---VYKSAEVVNLVTQELGGKITRQPGS--IPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 ---i~~~~~~l~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
+++.+++| +++|+++...|.. ...+.++++||+|||||.|||+...
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 66666777 9999998865532 1222347899999999999998653
No 88
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=1.3e-15 Score=112.31 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=78.5
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.||+|.|+|++++.+||+++|||++..+.. ...++..+.. +..+.+.. . .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~--~------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIE--G------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEe--C------CCceEEEEEEEC
Confidence 468999999999999999999999999765421 1233443222 33444422 1 134579999998
Q ss_pred c---hHHhHHHHHHHHHHhCCeeecCCccCC--CCCceEEEEECCCCceEEEeech
Q 022818 232 D---VYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
| ++++.+++ +++|+++...+.... .++.+++||+|||||.|||..+.
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 6 66666777 999999876554211 22357789999999999998664
No 89
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=3.2e-15 Score=110.30 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=80.7
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCC-ceeEEEEecCCCCcceEEEeeecCCCCc--ccCCCCceEEEEE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNYGVTS--YDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~~~~~i~~~ 99 (291)
+|+||+|.|.|++++++||+++|||+...+....+. .....++..........+.+........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998876543322 1123334322111222344443322111 1123357899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
|+ ++++++++++++|+++...+.. ++. ..++|+||+||+||++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FGE-RSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cce-EEEEEECCCCCEEEeC
Confidence 98 5799999999999987654332 333 3489999999999984
No 90
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=2.7e-15 Score=110.74 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=79.8
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeec--------C--cceeecCcce
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY--------G--VTEYTKGNAY 223 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~~~ 223 (291)
+.|+.|.|+|++++.+||+++|||++..... +..+.. +..+ ...+.+.... . +......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999999764322 111221 1111 1121111100 0 0001112344
Q ss_pred eEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
.|++|.|+|++++++++ +++|+++..+|...++ |.+.++++|||||.|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 69999999999999999 9999999988887776 45789999999999999874
No 91
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=2.5e-15 Score=111.24 Aligned_cols=118 Identities=28% Similarity=0.488 Sum_probs=84.3
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecC-CCceeEEEEecCCCCcceEEEeeecCCC-Cc-----ccCCCCceEE
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYGV-TS-----YDIGTGFGHF 96 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-----~~~g~~~~~i 96 (291)
|+||.|.|+|++++.+||+++||++........ +.....+++..+ ...+.+..+... .. ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997755432 233445666543 223334332211 11 1246788999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECC-C--CCEEEEEe
Q 022818 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDP-D--GYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp-~--G~~iel~~ 146 (291)
+|.|+|+++++++++++|+++..+|.....++.. +++.|| + |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKR-VAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCE-EEEEecCCCceEEEEecC
Confidence 9999999999999999999998877644444444 455555 4 99999975
No 92
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=4.3e-15 Score=111.80 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=83.3
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCC--
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d-- 102 (291)
.||.|.|+|++++.+||+++|||++..+.. . ...++.......+..+.+... ...+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 499999999999999999999999876532 1 345665432222233322111 23489999999976
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 103 -VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
+++++++|.++|+++...|...+.+...++|++||+|+.||+......
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~ 117 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEE 117 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcce
Confidence 467799999999998877766554454568999999999999887643
No 93
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=3.9e-15 Score=108.92 Aligned_cols=112 Identities=22% Similarity=0.235 Sum_probs=79.9
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCC-----cccCCCCceEEEEE
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-----SYDIGTGFGHFAIA 99 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~g~~~~~i~~~ 99 (291)
-+..|.|+|++++.+||+++|||+...... ....+..++. .+.+.+....... ....+ ...|++|.
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 73 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQG-QGLILNFE 73 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCC-ceEEEEEE
Confidence 367899999999999999999999875421 1233433322 2333332221111 11122 33489999
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
|+|++++++++.++|+++..+|...++|.+. ++++||+||+|+|+|
T Consensus 74 v~did~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 119 (119)
T cd08359 74 VDDVDAEYERLKAEGLPIVLPLRDEPWGQRH-FIVRDPNGVLIDIVQ 119 (119)
T ss_pred ECCHHHHHHHHHhcCCCeeeccccCCCcceE-EEEECCCCCEEEEEC
Confidence 9999999999999999988888877777554 889999999999985
No 94
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.66 E-value=1.8e-15 Score=111.05 Aligned_cols=113 Identities=26% Similarity=0.222 Sum_probs=78.6
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..... . ..++..........+.+.. ...++..|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D--RIYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C--eEEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 478999999999999999999999999765421 1 2223211111223333322 12246789999995
Q ss_pred ---chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 232 ---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
|++++++++ +++|+++...|.....+.++.+|+.|||||+|||+..
T Consensus 70 ~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 70 SEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 566677777 9999998766544333335789999999999999864
No 95
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=3e-15 Score=109.52 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=79.2
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcc----eeecCcceeEEEEEec
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----EYTKGNAYAQVAISTD 231 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~hi~~~v~ 231 (291)
+..|.|.|++++.+||+++|||++..... .+ ..+..++. ...+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WY--VSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cE--EEEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 56899999999999999999999775421 12 22322221 2334332211110 0111123359999999
Q ss_pred chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
|++++++++ +++|+++..+|...++ +.+.++++||+||+|||+|
T Consensus 76 did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 999999999 9999998888887776 4689999999999999986
No 96
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.66 E-value=6.6e-15 Score=106.74 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=80.0
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v 100 (291)
+++++|+.|.|+|++++.+||++ |||+...+.. + ..++..++. ..+.+..... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGT-DPFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCC-ccEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 9999865432 1 244543222 2222222111 124678999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
+|.+++.+.+++.|......+. .+++.. .++|.||+||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEec
Confidence 9999999999999998765432 444444 48999999999999875
No 97
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=2.5e-15 Score=110.91 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=79.9
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCc-cceEEEeccccCCceeEEEEeeecCcce--eecCcceeEEEEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-KYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~hi~~~ 229 (291)
++.|+.|.|.|++++++||+++|||++.......+. .....++.......+..+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 378999999999999999999999998766543221 1122223322111234566654322211 1122367899999
Q ss_pred ecc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 230 TDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
|+| ++++++++ +++|+++...+.. .+.+.+||+||+||+|||+
T Consensus 81 v~~~~~~~~~~~~~----~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERL----RAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHH----HHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 985 46666666 9999998654433 2358899999999999985
No 98
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=2.1e-15 Score=109.01 Aligned_cols=113 Identities=26% Similarity=0.312 Sum_probs=80.3
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCc-ccCCCCceEEEEEeCC
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED 102 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~i~~~v~d 102 (291)
|+|++|.|+|++++.+||+++||++...+...+. ...++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 5899999999999999999999999875433221 2345544432 1233333222111 1133467899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022818 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel 144 (291)
+++++++++++|+++...+.. .++.. .+++.||+|++||+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998876654 33443 48999999999985
No 99
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.65 E-value=6.4e-15 Score=111.40 Aligned_cols=114 Identities=20% Similarity=0.407 Sum_probs=82.9
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
.+++|+.|.|+|++++.+||+++|||+...... + ...++..++... .+.+... ...+..|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 478999999999999999999999999864422 1 235565543322 2333221 1247889999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022818 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~ 149 (291)
|++++. ++|+++|+++...+.....+...++||+||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877764 899999999876654433333445899999999999998753
No 100
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.65 E-value=4.3e-15 Score=108.97 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=81.2
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
.+|.||+|.|+|+++|.+||+++|||++..+.. . ...++..++. ++.+.+.... ..+..|++|.+.
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEEC
Confidence 368999999999999999999999999864421 1 1345554332 3444443221 236789999996
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEeCC
Q 022818 102 ---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
|+++++++|+++|+++...+... ..+...+++|+|||||.|||....
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58999999999999987654321 223334589999999999998764
No 101
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=2.8e-15 Score=107.65 Aligned_cols=108 Identities=26% Similarity=0.334 Sum_probs=76.5
Q ss_pred eeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhHH
Q 022818 159 LRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAE 238 (291)
Q Consensus 159 l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~~ 238 (291)
|.|+|++++++||+++|||++....+ .+..+..+ .........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLG--FRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEET--EEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEec--cchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999887332 12233222 110011222222211 11234578999999999999999
Q ss_pred HHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 239 VVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 239 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
++ +++|+++..+|...++ +.+.+++.|||||+|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 9999999999888777 468999999999999986
No 102
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=7e-15 Score=109.02 Aligned_cols=117 Identities=24% Similarity=0.271 Sum_probs=82.8
Q ss_pred CceEEEeeeCChhhhHHHHHHhc---CCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce---eecCcceeEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~hi 226 (291)
++.||.|.|.|++++.+||+++| ||++....+ + ...+... . .+..+.+.......+ ...++++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~---~--~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG---D--GGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec---C--CceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 999876542 1 1122221 1 135566654333221 1234578899
Q ss_pred EEEecc---hHHhHHHHHHHHHHhCCeeecCCccC--CCCCceEEEEECCCCceEEEeec
Q 022818 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 227 ~~~v~d---i~~~~~~l~~~~~~~G~~~~~~~~~~--~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+|.|++ +++++++| +++|+++...+... ...+.+.+|++||+||+|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999975 67777777 99999998877642 12245789999999999999853
No 103
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=5.8e-15 Score=108.96 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=81.1
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcc-eeecCcceeEEEEEe
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVAIST 230 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~hi~~~v 230 (291)
+++.|+.|.|.|++++.+||+++|||++....+ ..+.+..++ ....+.+....... ......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 368999999999999999999999999876521 233344322 23455554432211 122345788999999
Q ss_pred cc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
++ ++++++++ +++|+++.. +...+. .+.+||+|||||+|||....+
T Consensus 73 ~~~~~v~~~~~~l----~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRL----IELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHH----HHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 85 56666666 999998754 333333 378999999999999987654
No 104
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=2.1e-15 Score=109.05 Aligned_cols=113 Identities=23% Similarity=0.136 Sum_probs=80.3
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce-eecCcceeEEEEEecc
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~hi~~~v~d 232 (291)
|+|++|.|+|++++.+||+++||+++........ ...++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 5799999999999999999999999765433221 1122332221 2444443322211 1234567899999999
Q ss_pred hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEE
Q 022818 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel 278 (291)
++++++++ +++|+++..++.. . .+.+.+|++||+||+|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~-~-~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVP-G-DGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCC-C-CCccEEEEECCCCCEEeC
Confidence 99999999 9999998877754 2 235789999999999996
No 105
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.65 E-value=3.8e-15 Score=109.75 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=80.3
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++++||+++|||++.... +.+..+.++ . +..+.+... ....+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeC
Confidence 46889999999999999999999999976522 112222222 1 234544331 11234579999886
Q ss_pred --chHHhHHHHHHHHHHhCCeeecCCccC------CCCCceEEEEECCCCceEEEeec
Q 022818 232 --DVYKSAEVVNLVTQELGGKITRQPGSI------PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~~~~~------~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
|+++++++| +++|+++...|... ..++++.+||+|||||.|||+++
T Consensus 68 ~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 68 EEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 588888888 99999987776553 12356999999999999999986
No 106
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.65 E-value=9.4e-15 Score=107.04 Aligned_cols=113 Identities=25% Similarity=0.362 Sum_probs=81.9
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v 100 (291)
+.+|+|+.|.|+|++++.+||+++|||+...... + ..++..++. ....+.+... ..++..|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~--~----~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD--G----IVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC--C----EEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999865432 1 234443322 2233333221 123567999999
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCee--cCCCceEEEEEECCCCCEEEEEeCC
Q 022818 101 ---EDVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
+++++++++|+++|+++..+|.. .+++.. .++|+||+||.|+++...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 57899999999999998776533 344444 489999999999998764
No 107
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.64 E-value=5.9e-15 Score=106.00 Aligned_cols=108 Identities=23% Similarity=0.312 Sum_probs=75.9
Q ss_pred EEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHHHHH
Q 022818 29 YRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVE 108 (291)
Q Consensus 29 l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~~~~ 108 (291)
|.|+|++++++||+++|||++....+ . ...+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--D----YVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--S----EEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--C----eEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999988433 1 222322211000011222211 112234578899999999999999
Q ss_pred HHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 109 NIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
+++++|+++..+|...++|.. .+++.||+||+|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999999888888888755 499999999999986
No 108
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=6.9e-15 Score=109.53 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=78.4
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCc--cceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~ 229 (291)
.++.|++|.|+|++++.+||+++||+++..+...... ....++.. + ...+++..... ...++..|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-G----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-C----CeEEEEecCCC----CCCCCceEEEEE
Confidence 3689999999999999999999999987654322110 00111111 1 23455542111 122367899999
Q ss_pred ec--chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 230 TD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 230 v~--di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
|+ +++++.++| +++|+++..+. ....+.++.+||+|||||.|||....
T Consensus 74 v~~~~ld~~~~~l----~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERI----KALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHH----HHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 98 566777777 99999876433 22332358999999999999998654
No 109
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=1.9e-14 Score=106.67 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=81.8
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhc---CCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCc---ccCCCCceEE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~g~~~~~i 96 (291)
+|+||.|.|+|++++.+||+++| ||++..+.. .+ ..+... .. ...+.+.......+ ...+.+..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~-~~--~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG-DG--GTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec-CC--ceEEEEEecccCCCcccccCCcCeeEE
Confidence 57999999999999999999999 999876542 11 122221 11 23344443322211 1234578899
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEe
Q 022818 97 AIATE---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
+|.|+ |+++++++|+++|+++...+... ..+..+.+|++||+||+|||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 99996 48999999999999988876642 2233345899999999999985
No 110
>PRK06724 hypothetical protein; Provisional
Probab=99.64 E-value=5.3e-15 Score=109.32 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=74.3
Q ss_pred CCceEEEeeeCChhhhHHHHHHhc---CCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~ 228 (291)
.+++||.|.|+|+++|++||+++| |+++........+ ...+.+...... .....+..|+||
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~~--~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDEE--IVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCcc--ccCCCCceeEEE
Confidence 469999999999999999999966 6664322111111 111212110000 012346789999
Q ss_pred Ee---cchHHhHHHHHHHHHHhCCeeecCCccCC--CCCceEEEEECCCCceEEEeec
Q 022818 229 ST---DDVYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v---~di~~~~~~l~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~DpdG~~iel~~~ 281 (291)
.| ++++++.++| +++|+++..+|...+ .++.+.+||+|||||.|||+..
T Consensus 70 ~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 70 QAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred ecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 98 5677777777 999999987876544 2334788999999999999865
No 111
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.63 E-value=9.9e-15 Score=109.15 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=81.4
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecc
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~d 232 (291)
++.|+.|.|+|++++++||+++|||++...... . ...++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999997654321 1 233443221 11344555433222111233477899999998
Q ss_pred hHH---hHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhh
Q 022818 233 VYK---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 i~~---~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~ 284 (291)
+++ ++++| +++|+++...+.. + +++.+|++||+||+|||....+.
T Consensus 76 ~~~v~~~~~~l----~~~G~~~~~~~~~-~--~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERL----RAAGITPVWPVDH-G--NAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHH----HHCCCCccccCCC-C--ceeEEEEECCCCCEEEEEEcCCC
Confidence 553 55566 9999988765432 2 24789999999999999977654
No 112
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.63 E-value=9.8e-15 Score=105.65 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=78.7
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHh
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~ 236 (291)
..|.|+|++++++||+++|||+..... + ....+..+. ..+..+.+..... .++...|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 478999999999999999999975321 1 222233212 1233444432111 123457999999999999
Q ss_pred HHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 237 AEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+++| +++|+++..+|...++ +.+.+|+.||+||+|||+++
T Consensus 72 ~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 9999 9999999888877665 45789999999999999975
No 113
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.63 E-value=1.2e-14 Score=105.89 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=81.0
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
+++.|+.|.|+|++++.+||+++|||++....+ ...++..+.+ ....+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSED-DHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCC-CcEEEEEEeC-------CCCCceeEEEEcC
Confidence 368999999999999999999999999876532 1223332211 2334444321 1246789999998
Q ss_pred ---chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 232 ---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
++++..+++ +++|+++...|...++ +++.+|++||+||+||++..
T Consensus 67 ~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHL----EAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 466677777 9999999887765554 35889999999999999865
No 114
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.62 E-value=2.6e-14 Score=103.44 Aligned_cols=109 Identities=20% Similarity=0.269 Sum_probs=78.9
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHH
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~ 105 (291)
+..|.|+|++++.+||+++|||+.... .+ ...++..++ ...+.+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 356889999999999999999998643 11 123333222 1223343332211 12245699999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++++|++.|+++..+|...++|.+. +++.||+||+|+++++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWGVRR-FFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCceEE-EEEECCCCCEEEEEEc
Confidence 9999999999988888777776554 8999999999999875
No 115
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.62 E-value=4.7e-14 Score=105.47 Aligned_cols=120 Identities=25% Similarity=0.418 Sum_probs=82.0
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCC
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d 102 (291)
+|+|+.|.|+|++++++||+++||++....... . ...++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765431 1 234444331 11223333333222111233478899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 103 VY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 103 ~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
.+ +++++|.+.|+++...+. . ++. ..++++||+||+|||+...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~-~~~-~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H-GNA-WSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C-Cce-eEEEEECCCCCEEEEEEcCCC
Confidence 55 588999999998776532 1 222 348999999999999987654
No 116
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.62 E-value=1.1e-14 Score=106.59 Aligned_cols=112 Identities=28% Similarity=0.378 Sum_probs=79.1
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++++||+++|||+...... ++. ++..+.. ....+.+.. ...++..|++|.++
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIV--YLRATGS-EHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEE--EEECCCC-ccEEEEecc-------CCCCCCceEEEEeC
Confidence 368999999999999999999999999764422 233 2332221 223333321 11235689999995
Q ss_pred ---chHHhHHHHHHHHHHhCCeeecCCcc--CCCCCceEEEEECCCCceEEEeech
Q 022818 232 ---DVYKSAEVVNLVTQELGGKITRQPGS--IPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
+++++++++ +++|+++..+|.. .++ +++.++|+||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~-~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPG-GGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCC-CceEEEEECCCCCEEEEEecc
Confidence 577777777 9999998877643 233 467899999999999998754
No 117
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.62 E-value=1.5e-14 Score=104.46 Aligned_cols=109 Identities=25% Similarity=0.273 Sum_probs=79.2
Q ss_pred EeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhH
Q 022818 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~ 237 (291)
.|.|+|++++++||+++|||++..... +. .+.++..+ ...+.+........ ...++..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999876543 12 23334321 34455543332211 12346679999999999999
Q ss_pred HHHHHHHHHhCCe-eecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 238 EVVNLVTQELGGK-ITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 238 ~~l~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+++ +++|++ +..++...++ +.+.++++||+|+.|||+|
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999 999999 6666665555 4588999999999999986
No 118
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=1.6e-14 Score=104.68 Aligned_cols=109 Identities=23% Similarity=0.411 Sum_probs=75.9
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe--CCH
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT--EDV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v--~d~ 103 (291)
|+.|.|+|++++.+||+++||++...+.+ . ..++..++ ..+.+....... ..+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999875532 1 23343332 123232221111 1234678999999 579
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
+++++++.++|+++...+....++.. .++++||+||+||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGR-SIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCce-EEEEECCCCCEEEEEeC
Confidence 99999999999997654333233333 48999999999999864
No 119
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=104.07 Aligned_cols=120 Identities=27% Similarity=0.370 Sum_probs=90.9
Q ss_pred CCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022818 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v 230 (291)
...+.|..|.++|++++++||.++|||+.....+..+..|..+.... .+..+... - ... ...+++.+++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~-~~~gG~l~-~--~~~---~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG-AGAGGGLM-A--RPG---SPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC-ccccceec-c--CCc---CCCCCCCEEEEEec
Confidence 45688999999999999999999999998776655545554443332 12222221 1 111 11225668999999
Q ss_pred cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
+|++++++++ +++|.+++.++...|+ +++.+.+.||.||+|.|.+..
T Consensus 80 ~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999 9999999999999886 369999999999999998753
No 120
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.61 E-value=1.9e-14 Score=104.30 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=76.9
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++.+||++ |||++..+.. + . .++..++. ....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~---~-~~~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D---E-LYYRGYGT-DPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C---e-EEEecCCC-ccEEEEccc-------CCcCcccEEEEEEC
Confidence 3689999999999999999999 9999765421 1 2 22332211 122222111 12357789999999
Q ss_pred chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
|+++..+.+ +++|+.+...+. .++ +++++||+|||||.|||+..
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 988888888 889998765443 344 45889999999999999764
No 121
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.61 E-value=4.1e-14 Score=120.66 Aligned_cols=119 Identities=18% Similarity=0.282 Sum_probs=83.5
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCce-eEEEEecCCCCcceEEEeeecCCCCcccCCCC-ceEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG-FGHF 96 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~i 96 (291)
..+++|+||.|.|+|++++.+||+++|||+...+...+++.. ...++..+.. .+ .+.+... .+.+ ++|+
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-------~~~g~~~Hi 211 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-AH-DIAFVGD-------PEPGKLHHV 211 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-Cc-ccceecC-------CCCCceEEE
Confidence 447899999999999999999999999999876544433322 2344443221 11 1111111 1224 8899
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 97 AIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
||.|+| +++++++|+++|+++...|.....+...++||+||+||+||+..
T Consensus 212 af~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 212 SFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 999986 55678899999999877765544333346999999999999983
No 122
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=2.8e-14 Score=105.02 Aligned_cols=114 Identities=24% Similarity=0.241 Sum_probs=76.5
Q ss_pred ceEEEeeeCChhhhHHHHHHh---cCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022818 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v 230 (291)
+.|++|.|+|++++++||+++ ||+++.... .+ ..+. +..+. ....+.+....+..+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~--~~~~-~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP--GAVG-YGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC--ceeE-eccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 688876443 11 1222 33221 1344444333221111 223457999999
Q ss_pred cc---hHHhHHHHHHHHHHhCCeeecCCccCCC--CCceEEEEECCCCceEEEe
Q 022818 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~DpdG~~iel~ 279 (291)
++ ++++++++ +++|+.+..+|...++ .+.+.+||+|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAA----LAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHH----HHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 55556666 9999998888876654 2235689999999999996
No 123
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.60 E-value=2.6e-14 Score=104.93 Aligned_cols=110 Identities=30% Similarity=0.337 Sum_probs=76.6
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEe--
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST-- 230 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v-- 230 (291)
++.|+.|.|+|++++.+||+++|||++....+ +. .++..+ ...+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~----~~~~~~----~~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--KG----AYLEAG----DLWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--Cc----eEEecC----CEEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 47899999999999999999999999765432 11 122221 123333221111 1235678999998
Q ss_pred cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
+|++++++++ +++|+++..++.. + ++.+||+|||||+|||+...-
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~~ 112 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGSL 112 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCCH
Confidence 4677777777 9999998665443 1 368999999999999997643
No 124
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.60 E-value=1.7e-14 Score=104.43 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=74.2
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec--ch
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DV 233 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~--di 233 (291)
|+.|.|+|++++++||+++||+++....+ + ...+.+. ...+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~~~~~------~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAYFELA------GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeEEEec------CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999765432 1 1112111 2344443222111 12346789999995 57
Q ss_pred HHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+++++++ +++|+++...+...+. .++.+|++|||||+|||+..
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 7777777 9999998654333222 35889999999999999854
No 125
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.59 E-value=2.8e-14 Score=104.60 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=76.2
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHH
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~ 235 (291)
...|.|+|++++++||++ |||++...... .++.+..+ +..+.+....... ......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 357899999999999999 99997654321 23333322 2455554432111 11234689999999999
Q ss_pred hHHHHHHHHHHhCCeee-------cCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 236 SAEVVNLVTQELGGKIT-------RQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~-------~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
++++| +++|+++. .+|...++ +.+.++|+|||||+|||.|.
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 99999 99999743 33444444 56899999999999999874
No 126
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=3.5e-14 Score=104.24 Aligned_cols=109 Identities=28% Similarity=0.463 Sum_probs=77.7
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe--
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT-- 100 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v-- 100 (291)
+|+|+.|.|+|++++.+||+++||+++....+ + ..++..++ ..+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 47999999999999999999999999865432 1 23444332 22222221111 1234678999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
+|+++++++++++|+++...+.. .+ ..+||.||+||+||+++..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~--~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG--DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc--cEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 22 2489999999999999764
No 127
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.59 E-value=4e-14 Score=104.07 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=76.8
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecC---CCCcccCCCCceEEEEEe
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY---GVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~~~~~i~~~v 100 (291)
++||.|.|+|+++|++||++ |||++...... .....+..++ ...+.+...... .......+.+..+++|.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG-GVRLAWDTVESIRSFTPGWTPTGGHRIALAFLC 74 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC-CEEEEEEcccceeeecCCCCCCCCCcEEEEEEc
Confidence 57999999999999999975 99997543221 1122233321 122222111000 000001223456788876
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
. |+++++++|+++|+++..+|...++|.+. ++++||+||+|+|+
T Consensus 75 ~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~iel~ 121 (122)
T cd07235 75 ETPAEVDALYAELVGAGYPGHKEPWDAPWGQRY-AIVKDPDGNLVDLF 121 (122)
T ss_pred CCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEE-EEEECCCCCEEEEe
Confidence 4 89999999999999988888888887654 89999999999986
No 128
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.59 E-value=7.2e-14 Score=118.68 Aligned_cols=121 Identities=24% Similarity=0.351 Sum_probs=84.8
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
..+++|+||+|.|+|++++.+||+++||++...+...+.+.....++..+.. ...+.+... .+.+++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTNG-------NGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeecC-------CCCceeeEEE
Confidence 3578999999999999999999999999998765433333333444433221 112222211 2358999999
Q ss_pred EeCC---HHHHHHHHHHcCCe--eecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATED---VYKLVENIRAKGGN--VTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
.|+| ++++.++|+++|++ +...|.....+...++|++||+||+||+....
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9998 55678999999987 54455443333444689999999999998754
No 129
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=6.2e-14 Score=103.16 Aligned_cols=114 Identities=25% Similarity=0.266 Sum_probs=77.8
Q ss_pred eEEEEEEeCCHHHHHHHHHhh---cCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEe
Q 022818 24 FLHAVYRVGDLDRTIKFYTEC---FGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v 100 (291)
|+|+.|.|+|++++++||+++ ||++...+. .+ . .+.+..+... ..+.+......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~--~~~~~~~~~~--~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G--AVGYGKGGGG--PDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c--eeEeccCCCC--ceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 699886543 11 1 2233322222 23333332211111 222457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecCC--CceEEEEEECCCCCEEEEE
Q 022818 101 ED---VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~Dp~G~~iel~ 145 (291)
++ ++++++++.++|+.+...|...++ ...+.+||+||+||.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998877766553 2333489999999999987
No 130
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.59 E-value=9.1e-14 Score=100.36 Aligned_cols=109 Identities=28% Similarity=0.402 Sum_probs=78.4
Q ss_pred EEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHHHH
Q 022818 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~~~ 107 (291)
.|.|+|++++++||+++|||+...... .. ...++..+ . ..+.+......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--G--AQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--C--EEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999876543 12 23444432 2 23333332222111 2346668999999999999
Q ss_pred HHHHHcCCe-eecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 108 ENIRAKGGN-VTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 108 ~~l~~~G~~-~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
+++++.|++ +..++...++|... ++++||+|+.|+|+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMRE-FAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEE-EEEECCCCCEEEecC
Confidence 999999998 66666666666554 889999999999975
No 131
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=6.7e-14 Score=102.72 Aligned_cols=113 Identities=28% Similarity=0.463 Sum_probs=79.0
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCC------cccCCCCceEEE
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT------SYDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~g~~~~~i~ 97 (291)
+.|+.|.|+|++++++||+++|||++..+ +++. ..++..++. .. +.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR-GM--LLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC-cE--EEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998764 1222 345555443 22 2222211110 111234678999
Q ss_pred EEe--CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 98 IAT--EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v--~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
|.+ +|++++++++.++|+++...+. ..++... ++++||+|++||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~~-~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGRS-LYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCeeE-EEEECCCCCEEEEec
Confidence 998 5799999999999998876554 3344444 899999999999985
No 132
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=3.3e-14 Score=103.20 Aligned_cols=108 Identities=26% Similarity=0.275 Sum_probs=75.7
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce-eecCcceeEEEEEecc---
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD--- 232 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~hi~~~v~d--- 232 (291)
+.|.|+|++++++||+++||+++.... ..+..+... + ...+.+........ .....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 578999999999999999999976432 123332222 2 23444433322111 1123466899999986
Q ss_pred hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
++++++++ +++|+++..+|...++ ++.++|+|||||+|||+
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 66666666 9999999988887766 36789999999999996
No 133
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.59 E-value=7.8e-14 Score=102.19 Aligned_cols=112 Identities=24% Similarity=0.395 Sum_probs=77.6
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCC--
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d-- 102 (291)
.|+.|.|+|++++.+||+++||++...+.+ + ...+ ..++. .+.+.+..+... ...+..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~-~~~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKF-LLEDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEE-EecCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998765421 1 1222 22222 222333222111 11478899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCC-CceEEEEEECCCCCEEEEEeCC
Q 022818 103 -VYKLVENIRAKGGNVTREPGPLKG-GTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
++++++++.++|+++...+....+ +..+.++++||+||+|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 788999999999998776543322 2233588999999999999754
No 134
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.58 E-value=3e-14 Score=104.72 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=75.0
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeec-----CcceeecCcceeEEEE
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-----GVTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~~~~~~hi~~ 228 (291)
+.||+|.|+|+++|++||+. |||++...... . ....+..+. +..+.+.... .+.....+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~--~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--E--PHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--C--CcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 47999999999999999975 99987533221 1 111122111 1222221110 0000012234568888
Q ss_pred Eec---chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 229 STD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~---di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
.+. |+++++++| +++|+++..+|...++ +.+.++|+|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 875 788888888 9999999888887776 458899999999999996
No 135
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=8e-15 Score=113.68 Aligned_cols=128 Identities=38% Similarity=0.663 Sum_probs=107.9
Q ss_pred CCCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCC-----------ccceEEEeccccCCceeEEEEeeecCcceee
Q 022818 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYT 218 (291)
Q Consensus 150 ~~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 218 (291)
...+..|+.+.|.|.+++++||+++||+++.+..+.++ ++|+-.|++++++..++.+||+.|++-..+.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 34578899999999999999999999999887665555 6888899999999999999999999999999
Q ss_pred cCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhhhhhhhc
Q 022818 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 219 ~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~~~~~~~ 290 (291)
-|+++.||.+.++|+-..++.+ +..|.+ ..+.-.+++.||||+.|++.++.+.-+++|+
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~ 152 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQ 152 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEE
Confidence 9999999999999988888888 554432 1123568899999999999998777677664
No 136
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=3.8e-14 Score=104.49 Aligned_cols=112 Identities=23% Similarity=0.215 Sum_probs=75.2
Q ss_pred eEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCc------ce-eecCcceeEEE
Q 022818 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TE-YTKGNAYAQVA 227 (291)
Q Consensus 155 ~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~-~~~~~~~~hi~ 227 (291)
.+++|.|+|++++++||++ |||++......+. ...+..+ + ...+.+...... .. ...+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5789999999999999976 9999764332222 1222221 1 233444321100 00 01234567999
Q ss_pred EEecc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 228 ISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
|.|++ ++++++++ +++|+++..+|...++ .+.+||+|||||+|||+.
T Consensus 74 f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99984 66777777 9999999888877665 467899999999999974
No 137
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=3e-14 Score=105.06 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=73.0
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcc----e-eecCcceeEEE--E
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----E-YTKGNAYAQVA--I 228 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~-~~~~~~~~hi~--~ 228 (291)
|+.|.|+|++++++||+++|||++..... .+..+...+ ....+.+....... . .....+..|++ |
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999754321 112222111 12222222111000 0 01122445765 4
Q ss_pred EecchHHhHHHHHHHHHHhCCeeecCCccCC---CCCceEEEEECCCCceEEEee
Q 022818 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIP---GLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~---~~~~~~~~~~DpdG~~iel~~ 280 (291)
.++|+++++++| +++|+++..+|.... .++.+.+|++|||||+|||..
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 567899999999 999999987775421 223588999999999999974
No 138
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=6e-14 Score=102.98 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=77.4
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcc------eeecCcceeEEE
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKGNAYAQVA 227 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~hi~ 227 (291)
+.+|.|.|.|++++.+||+++|||++... .+..+ .++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998754 12222 33333232 223322211110 011234678999
Q ss_pred EEec--chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 228 ISTD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 228 ~~v~--di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
|.++ |++++++++ .++|+++...+. ... +++.+|++||+||+|||+++
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 9984 788888888 999999876554 222 45889999999999999863
No 139
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=8.7e-14 Score=100.96 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=77.7
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCc-ccCCCCceEEEEEeCC---
Q 022818 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED--- 102 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~i~~~v~d--- 102 (291)
+.|.|+|++++++||+++||+++.... .. ...+..++ .. .+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~--~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PT--FALFVLGS-GV--KLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cc--eEEEEeCC-Cc--EEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 679999999999999999999986532 11 23333322 22 233333322211 1123467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
++++++++.++|+++..+|...++|. .++|+||+||+||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88999999999999998888777774 378999999999986
No 140
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.57 E-value=3.9e-14 Score=101.58 Aligned_cols=112 Identities=29% Similarity=0.373 Sum_probs=82.5
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHH
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~ 235 (291)
|+.+.|+|++++++||+++||+++........ .....+..+ ...+++....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78899999999999999999999876654211 234444422 355666554332211234678899999999999
Q ss_pred hHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEE
Q 022818 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel 278 (291)
+.++| +++|+.+..++... ..+.+.+++.||+|+.|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~~-~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPREE-PWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcCC-CCCcEEEEEECCCCcEEeC
Confidence 99999 99999988777522 2346899999999999986
No 141
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.57 E-value=1.2e-13 Score=101.19 Aligned_cols=108 Identities=22% Similarity=0.224 Sum_probs=75.5
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHH
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~ 105 (291)
...|.|+|++++++||++ |||+...+.+. ..+++..++ ..+.+....... ......+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 467899999999999999 99998755331 133344332 233343322111 11234578999999999
Q ss_pred HHHHHHHcCCeee-------cCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 106 LVENIRAKGGNVT-------REPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
++++|+++|+++. .++...++|.+. ++|+||+||+|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~-~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMRE-FALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeE-EEEECCCCCEEEeecC
Confidence 9999999999742 344444566654 8999999999999874
No 142
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.57 E-value=1.3e-13 Score=98.85 Aligned_cols=112 Identities=31% Similarity=0.448 Sum_probs=81.5
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHH
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~ 105 (291)
|+.|.|+|++++.+||+++||++....... ......++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998876542 11234445433 233444443322221345578899999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022818 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel 144 (291)
++++|.++|+.+...+....++.. .+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGR-VAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcE-EEEEECCCCcEEeC
Confidence 999999999988877653334444 48999999999985
No 143
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.57 E-value=8.5e-14 Score=100.73 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=72.3
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeE--EEEEe
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ--VAIST 230 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h--i~~~v 230 (291)
+|.|+.|.|.|++++.+||+ +|||++.... + ... +...+. ....+.+... ...+..| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~~~-~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--GLE-LRTAGN--DHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--ceE-EEecCC--CceEEEeecC-------CCCceeeEEEEeEh
Confidence 68999999999999999997 6999986442 1 122 222111 2334444321 1123344 55556
Q ss_pred cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+|++++++++ +++|+++..++.. . +.+.+||+||+||+|||...
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~~--~-~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPPG--A-DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCCc--C-CCCEEEEECCCCCEEEEecC
Confidence 8899999999 9999998766522 2 24679999999999999854
No 144
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.57 E-value=1.1e-13 Score=101.45 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=76.0
Q ss_pred eEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecc--
Q 022818 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD-- 232 (291)
Q Consensus 155 ~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~d-- 232 (291)
.|+.|.|+|++++.+||+++||++.....+ . +..+... .. ...+.+...... ..++..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---~-~~~~~~~--~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD---D-YAKFLLE--DP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC---C-eeEEEec--CC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 589999999999999999999998754421 1 2222222 11 233333221111 11577899999988
Q ss_pred -hHHhHHHHHHHHHHhCCeeecCCccCCC-CCceEEEEECCCCceEEEeech
Q 022818 233 -VYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~DpdG~~iel~~~~ 282 (291)
+++.++++ .++|+++..+|..... ...+.+|++||+||+|||++..
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 55566666 9999998877654332 2247899999999999999753
No 145
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.57 E-value=1.2e-13 Score=100.00 Aligned_cols=108 Identities=19% Similarity=0.345 Sum_probs=72.9
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceE--EEEE
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH--FAIA 99 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~--i~~~ 99 (291)
++|+||.|.|+|++++.+||+ .|||++..+. + ...++..+.. ...+.+.... ..+..| +.+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~---~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG---D---GLELRTAGND--HRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C---ceEEEecCCC--ceEEEeecCC-------CCceeeEEEEeE
Confidence 468999999999999999998 6999986542 1 1222222222 2222222211 123444 4455
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
++|+++++++|+++|+++...+ .+++... ++|.||+||+|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~~-~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPDG-VWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCCE-EEEECCCCCEEEEecCC
Confidence 6899999999999999987654 3333333 89999999999998643
No 146
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.56 E-value=2.7e-13 Score=97.52 Aligned_cols=122 Identities=25% Similarity=0.287 Sum_probs=89.1
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
.+...+.|..|.|+|++++++||.++|||+........+ .....+..+.....-.+.- . .....+.+...+.|
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~--~---~~~~p~~~~~~iy~ 77 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMA--R---PGSPPGGGGWVIYF 77 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceecc--C---CcCCCCCCCEEEEE
Confidence 457788999999999999999999999999977644322 2334443322111111111 0 01112246678889
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
.|+|+++..+|.+++|.+++.++.+.+++.+. +.+.||+||+|.|++..
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~-a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPGGGRI-AHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCCceEE-EEEECCCCCEEEEeecC
Confidence 99999999999999999999999999975554 88999999999998753
No 147
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=8.4e-14 Score=102.67 Aligned_cols=113 Identities=26% Similarity=0.358 Sum_probs=73.4
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC---CCcc--cCCCCceEEE--E
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSY--DIGTGFGHFA--I 98 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~--~~g~~~~~i~--~ 98 (291)
||.|.|+|++++++||+++||+++..... ....+..++ ..+.+.+..... .... ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999864321 112232222 123333222110 0000 1112345654 5
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCC---CceEEEEEECCCCCEEEEEe
Q 022818 99 ATEDVYKLVENIRAKGGNVTREPGPLKG---GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~Dp~G~~iel~~ 146 (291)
.++|+++++++|+++|+++..+|..... +..+.++++|||||+|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6789999999999999998876654321 22345899999999999974
No 148
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=9.8e-14 Score=102.32 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=76.0
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC-----CCcc--cCCCCceEEE
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-----VTSY--DIGTGFGHFA 97 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~--~~g~~~~~i~ 97 (291)
.++.|.|+|++++++||++ |||+......... ...+..++ .. .+.+..... .... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~-~~--~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD-NI--FVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC-ce--EEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5899999999999999987 9999864332222 12233332 12 232322110 0000 1233457999
Q ss_pred EEeC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 98 IATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
|.|+ ++++++++++++|+++..+|...+++ + .+||+|||||+||++.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~-~-~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGFM-Y-GRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCce-E-EEEEECCCCCEEEEEE
Confidence 9997 58899999999999998887776653 3 3799999999999985
No 149
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.55 E-value=1.6e-13 Score=116.06 Aligned_cols=118 Identities=22% Similarity=0.359 Sum_probs=83.0
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCC--C-ceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEE
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE--E-KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~ 97 (291)
..+|+||.|.|+|++++.+||+++|||++..+...+. + .+...++..++. +..+.+.... ...+++|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~~------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAGP------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecCC------CCCceEEEE
Confidence 6799999999999999999999999999876532221 1 123455655432 2222222111 234789999
Q ss_pred EEeCCHHH---HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 98 IATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
|.|+|.++ +.++|+++|+ ....+.....+...++|++||+|++||+...
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 99988666 8999999999 4444444443445568999999999999864
No 150
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.55 E-value=1e-13 Score=99.69 Aligned_cols=95 Identities=25% Similarity=0.304 Sum_probs=75.8
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcc--cCCCCceEEEEEeCC
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHFAIATED 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~g~~~~~i~~~v~d 102 (291)
+||+|.|+|++++++||+++||++.......+....+..++..++.. ..+++.++...... ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988776666666777777765432 55677765544332 267899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 022818 103 VYKLVENIRAKGGNVTREP 121 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~ 121 (291)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999977654
No 151
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.4e-13 Score=99.69 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=72.4
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHh
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~ 236 (291)
..|.|+|++++++||++ |||++....+ ...++..+ ...+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 46889999999999987 9999876531 22334432 233334221111 112346899999999999
Q ss_pred HHHHHHHHHHhCCeee-----cCCccCCCCCceEEEEECCCCceEEEee
Q 022818 237 AEVVNLVTQELGGKIT-----RQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+++| +++|+++. .+|...++ +.+.++|+|||||+|+|.+
T Consensus 70 ~~~l----~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHI----KALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHH----HHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 9999 99998743 23344444 4699999999999999975
No 152
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=2.5e-13 Score=99.48 Aligned_cols=110 Identities=25% Similarity=0.250 Sum_probs=74.9
Q ss_pred EEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCc------ceeecCcceeEEEEEe
Q 022818 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TEYTKGNAYAQVAIST 230 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~~~~~~~~hi~~~v 230 (291)
|+|.|.|++++.+||+++|||++... .+..+ .++..+ +..+.+...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~---~~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD---SNDGV--AFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc---CCCce--EEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 68999999999999999999997655 11222 233321 244554332110 0111222344566665
Q ss_pred ---cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 231 ---DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ---~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+|++++++++ +++|+++..+|...++ +++.+|++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 5788888888 9999999888876665 4688999999999999975
No 153
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=2.1e-13 Score=98.77 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=72.3
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHHHH
Q 022818 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~~~ 106 (291)
..|.|+|++++++||++ |||++....+ ...++..++ ..+.+ ....... .....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~~l~l--~~~~~~~----~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--CAFYL--QDYYVKD----WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--EEEEe--ecCCCcc----cccCCEEEEEECCHHHH
Confidence 46889999999999988 9999976532 234555442 22323 2211111 11335789999999999
Q ss_pred HHHHHHcCCeee-----cCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 107 VENIRAKGGNVT-----REPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 107 ~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
+++|+++|+++. .++...++|.+. ++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~-f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGRE-FFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEE-EEEECCCccEEEeeC
Confidence 999999998643 234445666654 999999999999864
No 154
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.51 E-value=1.6e-13 Score=98.72 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=76.4
Q ss_pred eEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce--eecCcceeEEEEEecc
Q 022818 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~hi~~~v~d 232 (291)
+||++.|+|++++++||+++||+.+......+..+.+..++..+++ ...+||+++.+..+ ...+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999998777666666666666664432 26889888766543 2377899999999999
Q ss_pred hHHhHHHHHHHHHHhCCeeecCC
Q 022818 233 VYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~~ 255 (291)
++++.++| +++|++++..+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 99999987665
No 155
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=6.4e-13 Score=97.27 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=75.3
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC------CCcccCCCCceEEEEEe
Q 022818 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG------VTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~g~~~~~i~~~v 100 (291)
|.|.|+|++++.+||+++|||++..+. .. ...++..++ ..+.+..... ......+.+..++++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 11 233444432 2233332111 01111222344566554
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 101 ---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
+|++++++++++.|+++..++...++|... ++++||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGYS-GYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCceE-EEEECCCCCEEEEee
Confidence 689999999999999998887777776554 899999999999975
No 156
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=9.9e-13 Score=95.85 Aligned_cols=125 Identities=35% Similarity=0.515 Sum_probs=79.9
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCC---------C------CcceEEEeeecCCCC
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP---------E------QSHFVVELTYNYGVT 85 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~~~l~~~~~~~~~ 85 (291)
--.+.|..+.+.|+.++..||++++|+.+..+..+++-.+...+++... . ...-.+++..+.+..
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 3445778888888888888888888887765544433222222221100 0 001134555554432
Q ss_pred c-----cc----CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 86 S-----YD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ~-----~~----~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
+ +. .+.|.+||||.|+|++++.++|++.|+++...+.+... ...+++.||||+.||+...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc--cceeEEECCCCCeEEEeec
Confidence 1 22 12389999999999999999999999997665444333 1358899999999998754
No 157
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3e-12 Score=93.38 Aligned_cols=119 Identities=25% Similarity=0.357 Sum_probs=78.6
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce-----eecC----cce
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-----YTKG----NAY 223 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-----~~~~----~~~ 223 (291)
++.++.+.+++.-+...||...||+++.+..+.+......+... ....+|+..+++... +..+ .|.
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~-----~~~~~ELthn~Gtes~~~~~~~ngN~~prGf 116 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFS-----RNAKLELTHNWGTESPPDQAYLNGNKEPRGF 116 (170)
T ss_pred hhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEec-----ccCceeeecCCCCCCCcchhhcCCCCCCCcc
Confidence 45555666666666666666666665544444333222222222 145678877765542 2222 288
Q ss_pred eEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 224 ~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
.||||.|+||+++.++| ++.|+++...|....- -..+|+.||||++|||..+.
T Consensus 117 gHIci~V~di~sac~~l----kekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 117 GHICIEVDDINSACERL----KEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred ceEEEEeCCHHHHHHHH----HHhCceeeecCCCccc--cceeEEECCCCCeEEEeecC
Confidence 99999999999999999 9999998776665211 25799999999999998653
No 158
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.38 E-value=9.1e-12 Score=99.63 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=88.1
Q ss_pred CCCCCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcc-eeecCcceeEEE
Q 022818 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVA 227 (291)
Q Consensus 149 ~~~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~hi~ 227 (291)
..+..+..|+|.|+|++++..||+++||+++..+.+ +.+.++.++ ...+.|.+...+. +.+...|..|+|
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeee
Confidence 345678899999999999999999999999887654 333344333 2455565544332 224567999999
Q ss_pred EEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
|.+++..++.+.| .++.+.|+.+. +..++.. ...+||.||+||-||+....+
T Consensus 77 fLlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 77 FLLPTREDLARVL-NHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred eecCCHHHHHHHH-HHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 9999855544444 55588998875 4455444 478999999999999997744
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.31 E-value=2.7e-11 Score=95.84 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=73.5
Q ss_pred ceeeEEEEEEeC--CHHHHHHHHHhhcCCEEEEEeecCC--CceeEEEEecCCCCcceEEEeeecCCC---C---c---c
Q 022818 21 KRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYGV---T---S---Y 87 (291)
Q Consensus 21 ~~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~---~---~---~ 87 (291)
+.+|+||++.|+ |++++++||+++|||+.......++ .......+..++ ..+.+++..+... + . .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHH
Confidence 367999999999 9999999999999999887665443 234444555333 2344555543321 1 1 1
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 022818 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24789999999999999999999999999877654
No 160
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.30 E-value=1.7e-11 Score=96.92 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCceEEEeeeC--ChhhhHHHHHHhcCCeeeeeeccCC--ccceEEEeccccCCceeEEEEeeecCc--c-------eee
Q 022818 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV--T-------EYT 218 (291)
Q Consensus 152 ~~~~~v~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-------~~~ 218 (291)
.+++|+++.|+ |++++.+||+++|||++......++ .+.....+..+. ....+++..+... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 36899999999 9999999999999999887665433 233444444332 3566666654431 1 122
Q ss_pred cCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCc
Q 022818 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 219 ~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~ 256 (291)
.|+|++||||.|+|+++++++| +++|++++..|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4689999999999999999999 999999988873
No 161
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.22 E-value=2.2e-10 Score=78.81 Aligned_cols=118 Identities=27% Similarity=0.288 Sum_probs=74.7
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCC--cccCCCC--ce--E
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTG--FG--H 95 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~~--~~--~ 95 (291)
+.+-|+.|.|+|++++.+||.++||++.-...+ +.+-+.+-+ ..++..+....... ....|.+ .- .
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyG--HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYG--HQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecc--cEEEEEecCCcccccCcccCCCCCCCccce
Confidence 456899999999999999999999998743322 112222111 11222222221111 1112222 22 3
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCC---CceEEEEEECCCCCEEEEEeC
Q 022818 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKG---GTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~Dp~G~~iel~~~ 147 (291)
+.+.++|.-++.++|+++|+....+|....- |..+.+++.||.||.+|+-..
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 4677899999999999999987777765422 334458899999999998654
No 162
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.18 E-value=2.7e-09 Score=78.28 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=89.1
Q ss_pred EEEEeC-CHHHHHHHHHhhcCCEEEEEeecCC----------CceeEEEEecCCCCcceEEEeeecCCCCccc-CCCCce
Q 022818 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRDVPE----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYD-IGTGFG 94 (291)
Q Consensus 27 v~l~v~-d~~~~~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~~~~ 94 (291)
.-|..+ |.++|++||+++||.+...+....+ +...++.+.+++. .+.+.......... .+..-.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeE
Confidence 346778 9999999999999999998887777 5677777877632 22232222111111 222345
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022818 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~ 149 (291)
.|.+.++|++++++++.+.|+++..++....||.+. ..++||.|+.|-|.....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~-G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRY-GQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccce-EEEECCCCCEEEEecCcc
Confidence 667888899999999999999999999999998874 889999999999876543
No 163
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.15 E-value=7.1e-10 Score=76.36 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=76.3
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce----ee--cCcceeEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YT--KGNAYAQV 226 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~--~~~~~~hi 226 (291)
.+.|..+.|.|++++++||.++||+...+..+ +++-+..=. ......+....+... .. -......+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyG--HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYG--HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecc--cEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 36799999999999999999999999765443 233222110 122333322111110 00 11133456
Q ss_pred EEEecchHHhHHHHHHHHHHhCCeeecCCccCCC---CCceEEEEECCCCceEEEeech
Q 022818 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG---LNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~DpdG~~iel~~~~ 282 (291)
.|.++|.-+..++| +++|+.+..+|.-.-. +..+..++.||.||.+|+-.-.
T Consensus 76 Vl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 76 VLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EEEHHHHHHHHHHH----HHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 67788988888999 9999998877755321 1347799999999999996443
No 164
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.14 E-value=1.1e-09 Score=81.14 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=70.6
Q ss_pred Eeee-CChhhhHHHHHHhcCCeeeeeeccCC----------ccceEEEeccccCCceeEEEEeeecCcceeecCcceeEE
Q 022818 158 MLRV-GDLGRSIKFYEKALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 158 ~l~v-~d~~~~~~fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi 226 (291)
.|.+ .|.+++++||+++||+++......++ +.+....+..+ +..+.+....+.... .+.+..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4667 99999999999999999876653211 11122222211 223333222211111 12344689
Q ss_pred EEEecc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~~~v~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
++.|+| +++++++| ++.| +++.+|...++ +.+.++++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l----~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEAL----SEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHH----hcCC-eEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 999987 44555555 6555 88888888877 568999999999999984
No 165
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.14 E-value=2.1e-09 Score=78.81 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=83.3
Q ss_pred EeeeC-ChhhhHHHHHHhcCCeeeeeeccCC----------ccceEEEeccccCCceeEEEEeeecCcceeec-CcceeE
Q 022818 158 MLRVG-DLGRSIKFYEKALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK-GNAYAQ 225 (291)
Q Consensus 158 ~l~v~-d~~~~~~fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~h 225 (291)
-|.++ |.+++++||+++||.++.......+ +...-+.+..+ +..|-+....+...... ++....
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 35677 9999999999999999888776655 33333333322 23333333332222122 224456
Q ss_pred EEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 226 i~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
|.+.++|+++..+++ .++|+++..++....| |.++..++||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a----~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERA----AAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHH----HhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 788888888888888 9999999999999988 5699999999999999976543
No 166
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.12 E-value=5.9e-09 Score=77.14 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=75.1
Q ss_pred EEEe-CCHHHHHHHHHhhcCCEEEEEeec----------CCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEE
Q 022818 28 VYRV-GDLDRTIKFYTECFGMKLLRKRDV----------PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 28 ~l~v-~d~~~~~~FY~~~lG~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i 96 (291)
.|.+ .|.+++++||+++||+++...... ..+.+....+..++. .+++ ......... .+.+..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~--~l~~--~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ--RLMA--SDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE--EEEE--EcCCCCCCC-CCCCCEEE
Confidence 4666 899999999999999999876542 123344555665542 2222 222111111 12244578
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022818 97 AIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 97 ~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel 144 (291)
++.|+| +++++++|.+.| ++..++...+||.+. ..++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 888886 778889987766 888888888888765 8999999999987
No 167
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.11 E-value=7.7e-10 Score=96.16 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=73.7
Q ss_pred CCcceeeEEEEEEeC--CHHHHHHHHHhhcCCEEEEEeecCCC--ceeEEEEecCCCCcceEEEeeecCC---CC-----
Q 022818 18 KKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYG---VT----- 85 (291)
Q Consensus 18 ~~~~~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~---~~----- 85 (291)
...+.+|+||++.|+ |+++++.||+++|||+.......... ......+....+ ...+++..+.. .+
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g--~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDG--KVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCC--cEEEEEeccCCCCCCCHHHHH
Confidence 355899999999999 99999999999999999876554322 222223332222 34455554311 11
Q ss_pred -cccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 022818 86 -SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 86 -~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
....|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 1124789999999999999999999999999877653
No 168
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.07 E-value=4.7e-09 Score=82.06 Aligned_cols=147 Identities=24% Similarity=0.332 Sum_probs=81.9
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCC--CC---cc-------cCCC
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG--VT---SY-------DIGT 91 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~---~~-------~~g~ 91 (291)
|+|+.+.|+|++++.++|++.|||.+......+..++.-..+.+++.. |++....+ .. .. ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~Y----lEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGY----LELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSE----EEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCce----EEEEEeCCcccccccccceechhhcCCC
Confidence 799999999999999999778999999877776645555555555532 33333211 11 11 1467
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceE--EEEEECC----CCCEEEEEeCCC-CC---------CCce
Q 022818 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTH--IAFVKDP----DGYIFELIQRGP-TP---------EPLC 155 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~--~~~~~Dp----~G~~iel~~~~~-~~---------~~~~ 155 (291)
|+..+|++++|+++..++|++.|+.... +...+++... .+++.+. .+..-.+++..+ .+ .+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~~-r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAGS-RVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEEE-EEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCCC-cCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 8999999999999999999999976211 1222222222 2444553 234445553332 21 2589
Q ss_pred EEEeeeCChhhhHHHHHHhc
Q 022818 156 QVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~l 175 (291)
++.+.++|.+++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 169
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=71.73 Aligned_cols=119 Identities=21% Similarity=0.207 Sum_probs=71.9
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeec-------CcceeecCcceeEE
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-------GVTEYTKGNAYAQV 226 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-------~~~~~~~~~~~~hi 226 (291)
...|+|.|.|++++.+||+. |||+.-........ ...... + ...+-|.... .+........-..|
T Consensus 4 mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a--~~mi~~---~--ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDA--ACMIIS---D--NIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred EEEEecchhhHHHHHHHHHH-hCcccCCCcccccc--eeEEEe---c--cEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 46789999999999999977 99996654432221 111122 1 1111111110 01111233455789
Q ss_pred EEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
+|.+.+ .+.++.+-+++.++|+++..+|..... ....-|.|||||.||++--..
T Consensus 76 ~ls~~s-~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 76 SLSAGS-REEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EeccCc-HHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeCH
Confidence 999876 333344434449999998777665322 234569999999999986544
No 170
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.98 E-value=3.3e-09 Score=78.31 Aligned_cols=121 Identities=24% Similarity=0.269 Sum_probs=72.8
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCcc---ceEEEeccccCCceeEEE--------EeeecCcc-eeecC
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK---YTLAMLGYAEEDQTTVLE--------LTYNYGVT-EYTKG 220 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--------l~~~~~~~-~~~~~ 220 (291)
++.|+.+.|+|++++++||+++||+++.......... ....+............. ........ ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5889999999999999999999999988765433221 112211111000000000 00000000 01111
Q ss_pred -cceeEEEEEecc---hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 221 -NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 221 -~~~~hi~~~v~d---i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
.+..|+++.+++ +....... ...|..+...+. ..+ +..+|++||||+.|||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 246799999998 55555566 778888765544 222 238999999999999974
No 171
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.95 E-value=4e-09 Score=77.90 Aligned_cols=122 Identities=22% Similarity=0.368 Sum_probs=72.8
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCce--eEEEEecCCC-CcceEEEe--------eecCCCCcccCC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY--SNAFLGFGPE-QSHFVVEL--------TYNYGVTSYDIG 90 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~l~~--------~~~~~~~~~~~g 90 (291)
++++|+.|.|+|++++.+||+++||++............ ....+..... ........ ............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 468999999999999999999999999988655332211 1111111110 00000000 000000000011
Q ss_pred --CCceEEEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022818 91 --TGFGHFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 91 --~~~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~ 146 (291)
.+..|+++.+.+ ...........|..+..... ..++. .+|++||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 246799999988 66666777777877654433 32322 5899999999999864
No 172
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.92 E-value=1e-08 Score=75.61 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=83.7
Q ss_pred CCcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcc--cCCCCceE
Q 022818 18 KKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGH 95 (291)
Q Consensus 18 ~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~g~~~~~ 95 (291)
+..+.+++||.+.+++.+++..+++. |||+...+..... ...++ .+.+.+++..........+ .+|++++.
T Consensus 4 P~g~~G~dFvEFa~~~~~~l~~~~~~-lGF~~~a~hrsk~----v~l~r--QG~I~~vln~ep~s~a~~~~~~HG~sv~a 76 (139)
T PF14696_consen 4 PLGLDGFDFVEFAVPDAQALAQLFTA-LGFQPVARHRSKD----VTLYR--QGDINFVLNSEPDSFAAEFAAQHGPSVCA 76 (139)
T ss_dssp TT-EEEEEEEEEE-SSTTSCHHHHCC-CCEEEECCECCCS----EEEEE--ETTEEEEEEEESTSCHHHHHHHHSSEEEE
T ss_pred CCCCCCeEEEEEecCCHHHHHHHHHH-hCcceEEecCCcc----eEEEE--eCCEEEEEeCCCcchHHHHHHhcCCEEEE
Confidence 36789999999999998888888865 9999998765332 33344 3356777755332222222 27899999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
|+|+|+|.+++++++.++|++....|... +...+.-++.+.|.++.|++....
T Consensus 77 iafrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 77 IAFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999999999877654322 233446789999999999987654
No 173
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.89 E-value=8.3e-09 Score=89.39 Aligned_cols=101 Identities=21% Similarity=0.345 Sum_probs=73.3
Q ss_pred CcceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCC-----ceeEEEEecCCCCcceEEEeeecCC-------CCc
Q 022818 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----KYSNAFLGFGPEQSHFVVELTYNYG-------VTS 86 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~ 86 (291)
..+.+|+||++.|+++++++.||+++|||+..+....++- ..+...+..++.. ..+++..+.. ...
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~--v~ipLnEP~~~~~~~SqI~e 253 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEM--VLLPLNEPTFGTKRKSQIQT 253 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCc--EEEEeccCCCCCCCcChHHH
Confidence 3478999999999999999999999999998865443221 2345555544332 3444444321 111
Q ss_pred c---cCCCCceEEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 022818 87 Y---DIGTGFGHFAIATEDVYKLVENIRAK----GGNVTREP 121 (291)
Q Consensus 87 ~---~~g~~~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 121 (291)
+ ..|.|++||||.|+|+.++.++|+++ |++....|
T Consensus 254 FL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 254 YLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 2 25789999999999999999999999 98877654
No 174
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.81 E-value=5.9e-08 Score=68.25 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=72.1
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcc-------cCCCCceE
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY-------DIGTGFGH 95 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~g~~~~~ 95 (291)
+.-.|.|.|.|++++.+||+. |||+.-.... +.. . ..+-.++ .+..+| +... .-..+ .....-.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~s--de~-a-~~mi~~~-ni~vML-L~~~-~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFS--DED-A-ACMIISD-NIFVML-LEEA-RFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcc--ccc-c-eeEEEec-cEEEEE-eccH-HhhhhcccccccccCCceEE
Confidence 446789999999999999998 9999854322 111 1 2222222 111111 1111 00000 01223345
Q ss_pred EEEEeC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022818 96 FAIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 96 i~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~ 149 (291)
+|+.+. ++|++.+++.+.|.++..++.+... .....|.|||||.||++.-++
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeCH
Confidence 677774 5889999999999998777655543 222568999999999987654
No 175
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.70 E-value=2.9e-08 Score=80.83 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=90.4
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce-----eecCcceeEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-----YTKGNAYAQV 226 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-----~~~~~~~~hi 226 (291)
.+++||.+.|.|...+..||+..|||++....+...+...+......++...+.+.-..+++.+. ...|.+.--+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvkdv 95 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDV 95 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhce
Confidence 46899999999999999999999999987755433322222222222221222222222222211 1256678899
Q ss_pred EEEecchHHhHHHHHHHHHHhCCeeecCCccCCCC--CceEEEEECCCCceEEEeechhhhhh
Q 022818 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL--NTKITSFVDPDGWKTVLVDNEDFLKE 287 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~--~~~~~~~~DpdG~~iel~~~~~~~~~ 287 (291)
||.|+|.+++...+ .++|+.+..+|...... ..+++.++.+.-....+++++.+.++
T Consensus 96 afeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 96 AFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred EEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 99999999999999 99999999998775432 24778888887777778887776654
No 176
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.68 E-value=1.9e-06 Score=60.46 Aligned_cols=114 Identities=23% Similarity=0.303 Sum_probs=64.7
Q ss_pred EEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCCHH
Q 022818 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d~~ 104 (291)
.+-+|.|+|-+..++||+++|||++..+.. .+++|+.......|+++-++...........-+.++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 467899999999999999999999988754 46777765555567776555444333333446889999999877
Q ss_pred HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
++. .|.++|.++... .....| +. +-+.+|+|+.|.+...+
T Consensus 76 EIe-~LLar~~~~~~l-~kg~~g-yA-fe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 EIE-ALLARGAQYDRL-YKGKNG-YA-FEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHH-HHHHC-S--SEE-EE-SSS-EE-EEEE-TT--EEEEE--S
T ss_pred HHH-HHHhccccccee-EEcCCc-eE-EEEECCCCCEEEEEEcC
Confidence 754 445556553221 111222 21 33579999999877543
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.65 E-value=2.8e-07 Score=77.33 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=69.3
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~ 231 (291)
.+-.||+|.|.|+++|.+||+++|++.. ... +. ... ++ . .-..+-+.. .+ .....-.-+||.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~---Fsd-e~--a~c-m~--d--tI~vMllt~-~D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC---WDG-DK--LFL-LG--K--TSLYLQQTK-AE----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC---CCC-Cc--ccc-cc--C--cEEEEEecC-CC----CCCcceEEEEeccC
Confidence 3567999999999999999999988874 211 11 111 11 1 112222211 11 22335568999998
Q ss_pred chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEee
Q 022818 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~ 280 (291)
+ .+.++++-+++.++|++...+|.++.. .--|.|||||.||++-
T Consensus 310 S-re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 C-EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred C-HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 7 555555555559999976665555322 4458999999999984
No 178
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=4.4e-07 Score=76.19 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=70.2
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
.+.-||.|.|+|+++|.+||+++|++.. .. ++. ...+ ++ .+ +.+-+... +. ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~--a~cm--~d-tI-~vMllt~~-D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK--LFLL--GK-TS-LYLQQTKA-EK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc--cccc--cC-cE-EEEEecCC-CC----CCcceEEEEeccC
Confidence 3456999999999999999999988874 22 221 1222 22 12 12222222 11 1123445688886
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 102 D---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
+ +|++.+++.++|.+...++.+... . --|.||||+.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~---rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP-L---RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC-c---ceeECCCCCEEEEEEE
Confidence 4 889999999999977666666555 2 4589999999999865
No 179
>PRK10148 hypothetical protein; Provisional
Probab=98.46 E-value=2.6e-05 Score=58.83 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=76.7
Q ss_pred EEEEeC-CHHHHHHHHHhhcCCEEEEEee---c-----------------CCCceeEEEEecCCCCcceEEEeeecCCCC
Q 022818 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRD---V-----------------PEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85 (291)
Q Consensus 27 v~l~v~-d~~~~~~FY~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (291)
.-|..+ +.++|++||+++||.++..... . +++.+.++.+.+++. .+++ ..... .
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~--~lm~--sD~~~-~ 79 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS--DIMM--SDAIP-S 79 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE--EEEE--ECCCC-C
Confidence 345555 8999999999999998865432 1 124455666766542 2222 22111 1
Q ss_pred cccCCCCceEEEEEeCCHHH---HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022818 86 SYDIGTGFGHFAIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 86 ~~~~g~~~~~i~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~ 150 (291)
....+ .-.++++.++|.++ ++++| +.|.++..++.+.+||.+. ..++||.|+.|.|......
T Consensus 80 ~~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~-g~v~D~fGi~W~l~~~~~~ 144 (147)
T PRK10148 80 GKAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGF-GKVTDKFGVPWMINVVKQQ 144 (147)
T ss_pred cCCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhcc-EEEECCCCCEEEEEecCCC
Confidence 11111 24567788888776 55655 6889999999999998764 8899999999999876543
No 180
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.45 E-value=9.5e-06 Score=57.02 Aligned_cols=113 Identities=28% Similarity=0.419 Sum_probs=63.6
Q ss_pred EEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce-eecC-cceeEEEEEecch
Q 022818 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKG-NAYAQVAISTDDV 233 (291)
Q Consensus 156 ~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~-~~~~hi~~~v~di 233 (291)
+-.|.|.|-+..++||++.|||++..+.. .+++++...+.....||-+. .... .-.| --+.++.+.|++
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP--~~rtr~V~G~KKl~~ivIkv~~- 73 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESP--SMRTRAVEGPKKLNRIVIKVPN- 73 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE----TTT-B--SSS-SEEEEEEEESS-
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCC--ccccccccCcceeeEEEEEcCC-
Confidence 45789999999999999999999886643 55666643433344444322 1111 1122 267899999998
Q ss_pred HHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhh
Q 022818 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~ 284 (291)
....++| .++|.++...-. +..+..+-..+|+|++|.+....+.
T Consensus 74 ~~EIe~L----Lar~~~~~~l~k---g~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 74 PKEIEAL----LARGAQYDRLYK---GKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp HHHHHHH----HHC-S--SEEEE----SSSEEEEEE-TT--EEEEE--S-G
T ss_pred HHHHHHH----HhcccccceeEE---cCCceEEEEECCCCCEEEEEEcCCH
Confidence 6667777 777766422212 2234666688999999999877653
No 181
>PRK10148 hypothetical protein; Provisional
Probab=98.44 E-value=8.4e-06 Score=61.53 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=71.4
Q ss_pred Eeee-CChhhhHHHHHHhcCCeeeeeecc---C-----------------CccceEEEeccccCCceeEEEEeeecCcce
Q 022818 158 MLRV-GDLGRSIKFYEKALGMKLLRTVDK---P-----------------EYKYTLAMLGYAEEDQTTVLELTYNYGVTE 216 (291)
Q Consensus 158 ~l~v-~d~~~~~~fy~~~lG~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 216 (291)
-|.. .|.+++++||+++||.++...... + ++......+..+ +..|.+....+..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~~- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPSG- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCCc-
Confidence 4556 489999999999999887644321 0 112222222221 1223222211111
Q ss_pred eecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 217 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 217 ~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
...+ ...++++.++|.+++ +++.++ .+.|+++..++...++ +.++..++||.|+.|.|...+
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~-~~~~~a-La~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEG-KRWFDN-LAANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred CCCC-CeEEEEEECCCHHHH-HHHHHH-hhCCCEEEecchhcch-hhccEEEECCCCCEEEEEecC
Confidence 1111 246788888886553 333333 3699999999999888 568999999999999997653
No 182
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.24 E-value=4.9e-06 Score=69.42 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=74.2
Q ss_pred CcceeeEEEEEEeC--CHHHHHHHHHhhcCCEEEEEeecCCC--ceeEEEEecCCCCcceEEEeeecCCCCc----c---
Q 022818 19 KDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYGVTS----Y--- 87 (291)
Q Consensus 19 ~~~~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~--- 87 (291)
..+..|+|++..|. .++....||+++|+|+.....+.++. ..+.-.+....+. +.+.+.......+ +
T Consensus 163 ~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~--vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 163 VGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGK--VRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred cCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCc--EEeecccCCCchhHHHHHHHH
Confidence 34679999999887 89999999999999999987776553 3333334333333 3444433322222 1
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 022818 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.||+|.++|+-+..++++++|++....|.
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 26889999999999999999999999999876654
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.14 E-value=5.6e-05 Score=55.90 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=76.3
Q ss_pred CceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcce----eecCcceeEEEE
Q 022818 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~hi~~ 228 (291)
.+.+|.+.+++.++...+++ .|||+.+.....-+ ..++..+ ...+.+....+... ...|++.--++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~--v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD--VTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS--EEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc--eEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 57899999999888888885 59999887654322 2333222 34444433222111 236889999999
Q ss_pred EecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechhh
Q 022818 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~~ 284 (291)
.|+|..+++++. .++|.+.+..|.... ...+--++-++|.++-|+++...
T Consensus 80 rV~Da~~A~~rA----~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 80 RVDDAAAAYERA----VALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EES-HHHHHHHH----HHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--SS
T ss_pred EeCCHHHHHHHH----HHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999 999999887764322 24677899999999999998654
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.89 E-value=6.6e-05 Score=58.61 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=50.7
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCc--cceEEEeccccCCceeEEEEeeecCccee------------ec
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTEY------------TK 219 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~------------~~ 219 (291)
|+|+.+.|+|++++.++|++.|||.+.....-+.. .-.++.++ + . .||+....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~--~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG--D---G-YLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S--S---S-EEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC--C---c-eEEEEEeCCcccccccccceechhhcC
Confidence 68999999999999999988899998876554432 22445554 2 3 6777664322211 13
Q ss_pred CcceeEEEEEecchHHhHHHHHHHHHHhCCe
Q 022818 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGK 250 (291)
Q Consensus 220 ~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~ 250 (291)
+.|+.+++|.++|+++..+++ ++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 568999999999999999999 899975
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.95 E-value=0.038 Score=39.83 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=52.7
Q ss_pred CChhhhHHHHHHhcCCeeeee-eccCCc------cceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchH
Q 022818 162 GDLGRSIKFYEKALGMKLLRT-VDKPEY------KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~ 234 (291)
.+.++|.+||.++||-..... ...++. ......+..+ +..+-..... .....+++ ..+++.++| .
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~~-~sl~i~~~~-~ 82 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGNN-ISLCIECDD-E 82 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----TT-EEEEEEESS-H
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCCc-EEEEEEcCC-H
Confidence 789999999999999533222 222211 1111122211 1222221111 12223333 678888988 5
Q ss_pred HhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
+.++++.++|.+.|- +. .++..++|..|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~----------~~-~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ----------WF-SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE----------TC-CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC----------cc-ceeEEEEeCCCCEEEeC
Confidence 566666666576654 22 38899999999999885
No 186
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.56 E-value=0.16 Score=36.54 Aligned_cols=96 Identities=20% Similarity=0.404 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhhcCCEEE-EEeecCC------CceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeCC--
Q 022818 32 GDLDRTIKFYTECFGMKLL-RKRDVPE------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 32 ~d~~~~~~FY~~~lG~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~d-- 102 (291)
.+.++|.+||+++||-..+ .....++ +...++.+.+++. .++. .... ..+..+ ....+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~--~lm~--~D~~--~~~~~~-~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ--KLMA--SDGG--PDFPFG-NNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE--EEEE--EEES--TS-----TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe--EEEE--ECCC--CCCCCC-CcEEEEEEcCCHH
Confidence 6899999999999995333 3333332 2444555665432 2222 1111 122223 23577888877
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022818 103 -VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~ 145 (291)
+++++++|.+.|- +.. .+..+.|.-|..|.++
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 5566788888774 223 4588999999988774
No 187
>PF15067 FAM124: FAM124 family
Probab=95.90 E-value=0.11 Score=41.56 Aligned_cols=104 Identities=15% Similarity=0.213 Sum_probs=59.9
Q ss_pred eeEEEEEEeC--CHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEe-cCCCCcceEEEeeec-CCCCcccCCCCceEEEE
Q 022818 23 RFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLG-FGPEQSHFVVELTYN-YGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~i~~ 98 (291)
-+-.+.|.|+ |.+.+++||+-+|+-+...... + .-++. +......+.+.+..- .+..+. ...-.-+.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~----FC~F~lys~~~~~iQlsLK~lp~~~~p~--p~esavLqF 199 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D----FCFFTLYSQPGLDIQLSLKQLPPGMSPE--PTESAVLQF 199 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C----cEEEEEecCCCeEEEEEeccCCCCCCcc--cccceEEEE
Confidence 4557889999 9999999999999998865432 1 22222 222223333333222 111111 112345789
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022818 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel 144 (291)
.|.|+.++...|-.--..+ +..+ .-..|||||.|-|
T Consensus 200 ~V~~igqLvpLLPnpc~PI---------S~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPCSPI---------SETR-WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCcccc---------cCCc-ceeeCCCCCEecc
Confidence 9999987665543221111 1222 4579999999854
No 188
>PF15067 FAM124: FAM124 family
Probab=95.20 E-value=0.6 Score=37.44 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=68.1
Q ss_pred EEEECCCCCEEEEEeCCCCCCCceEEEeeeC--ChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEe
Q 022818 132 AFVKDPDGYIFELIQRGPTPEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELT 209 (291)
Q Consensus 132 ~~~~Dp~G~~iel~~~~~~~~~~~~v~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 209 (291)
+|-.+|.=-+|.+-+-. -...+.-++|.|+ |.+.+++||+-+|+-+..... .+ +-++.+ +... +..+.+.
T Consensus 108 fysl~~~~PlWavr~VH-~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k--~~--FC~F~l-ys~~--~~~iQls 179 (236)
T PF15067_consen 108 FYSLDPGMPLWAVRQVH-YGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQK--ED--FCFFTL-YSQP--GLDIQLS 179 (236)
T ss_pred ceecCCCCceeEEeeee-ccccEEEEEEEecCCCHHHHHHHHHHHhccCcceee--CC--cEEEEE-ecCC--CeEEEEE
Confidence 33445544444443322 2235778899998 999999999999998764332 22 222222 2232 3344443
Q ss_pred eecCcc-eeecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEE
Q 022818 210 YNYGVT-EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 210 ~~~~~~-~~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel 278 (291)
...-+. -.+.+....-+.|.|.|+-+++.-| -+... |...++ -...|||||.|-|
T Consensus 180 LK~lp~~~~p~p~esavLqF~V~~igqLvpLL-----Pnpc~--------PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 180 LKQLPPGMSPEPTESAVLQFRVEDIGQLVPLL-----PNPCS--------PISETR-WQTEDYDGNKILL 235 (236)
T ss_pred eccCCCCCCcccccceEEEEEecchhhhcccC-----CCCcc--------cccCCc-ceeeCCCCCEecc
Confidence 321111 1122234467899999987777666 12221 111123 2378999999854
No 189
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.94 E-value=0.096 Score=36.26 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=38.7
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec-c
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD-D 232 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~-d 232 (291)
+..+.|+|+| +++..||+++||-... ..+.+....++ ...++- ...=+.-.+-|.|+ +
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G~--DL~~~~---------~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQGP--DLTIEN---------NETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---C--CGSS-T---------TSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccCC--ccccCC---------CcEEeeEEEEEEecCc
Confidence 5578999999 8899999998873211 12222211000 000000 00115567888998 3
Q ss_pred --hHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEE
Q 022818 233 --VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 --i~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel 278 (291)
+.+...++ .+.++- -++ ..+++.+.||.|..|.|
T Consensus 65 ~Dl~~L~~~l----e~~~~f---idK-----k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHL----EEQEFF---IDK-----KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHT----TTS-EE-----T-----T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHh----cccceE---ecC-----CceEEEEECCcceEEEe
Confidence 44444444 653321 122 24789999999998876
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.53 E-value=0.13 Score=35.56 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=39.0
Q ss_pred eeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCceEEEEEeC-
Q 022818 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE- 101 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~v~- 101 (291)
.+..+.|.|+| +++.+||+++||-.. + ..+.+-.. .+ ..+.+ .....-.+.-+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~------~---~~l~f~ea-~G-~DL~~---------~~~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL------P---FFLTFQEA-QG-PDLTI---------ENNETWDLEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH------T---TTEEEEE-----CCGSS----------TTSBSSEEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC------C---ceEEEeec-cC-Ccccc---------CCCcEEeeEEEEEEecC
Confidence 35689999999 889999999886211 0 01111110 00 00100 0001124556678887
Q ss_pred --CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022818 102 --DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 102 --d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel 144 (291)
|+.++.+++.+.+.=+. -+..++.+.||++..+-|
T Consensus 64 ~~Dl~~L~~~le~~~~fid--------Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEFFID--------KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEEE
T ss_pred cccHHHHHHHhcccceEec--------CCceEEEEECCcceEEEe
Confidence 57788888888543211 122357789999966543
No 191
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.38 E-value=11 Score=27.90 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=33.7
Q ss_pred eEEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
..+-+.++| .+..++++.+|.+.|.+- ....+++|-.|.-|.|+-+
T Consensus 79 ~S~~v~~~~-q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 79 FSFQVACDD-QEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEEEcCC-HHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 345555667 777788877779888621 3678899999999999643
No 192
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=69.22 E-value=17 Score=24.14 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022818 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~ 148 (291)
+.+++.+.+.+.|+.+..- ....+|.+. +...|.+|+.+++.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~v-e~~~~g~ye-v~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV-EFDDDGCYE-VEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEE-EEcCCCEEE-EEEEECCCCEEEEEEcC
Confidence 6889999999999965543 222344444 66899999999987654
No 193
>PRK11700 hypothetical protein; Provisional
Probab=64.89 E-value=66 Score=25.20 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=44.6
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCC-----CcceEEEeeecCCCCcccCCCCceE
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~g~~~~~ 95 (291)
--.++||.+.|++.+.+.+|-+..+-+-..-.... -++-.+..+.+... ..--.++++.+.. ..-+..|+-|
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~-INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEH 113 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSENI-INGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEH 113 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccc-cCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceE
Confidence 34579999999999999999888764433221111 11222333333211 1112355555433 2224558999
Q ss_pred EEEEeCC
Q 022818 96 FAIATED 102 (291)
Q Consensus 96 i~~~v~d 102 (291)
|-+-++.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9988854
No 194
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=64.14 E-value=69 Score=25.12 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=39.8
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEE------ecCCCCcceEEEeeecCCCCcccCCCCceE
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFL------GFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 95 (291)
-.++||++.|++.+.+.++-+..+..-..-....-.|+ .+..+ .+++..+ -.++++.+.. ..-...|+-|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGR-PI~l~~L~qPL~~~~~~I-~~vELP~P~~--K~Yp~eGWEH 108 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGR-PICLFKLNQPLQFGGWSI-DCVELPYPKD--KRYPQEGWEH 108 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTE-EEEEEEEEEEEEETTEEE-EEEEEE---S--S--SS-EEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCe-eEEEEEcCCchhcCCeeE-EEEEeCCCCC--CCCCCCCceE
Confidence 46799999999999999999998866544332211221 22222 2222111 2456665543 2224458999
Q ss_pred EEEEeCC
Q 022818 96 FAIATED 102 (291)
Q Consensus 96 i~~~v~d 102 (291)
+-|-++.
T Consensus 109 IE~Vip~ 115 (185)
T PF06185_consen 109 IEFVIPS 115 (185)
T ss_dssp EEEE--S
T ss_pred EEEEecC
Confidence 9998864
No 195
>PHA02754 hypothetical protein; Provisional
Probab=62.61 E-value=19 Score=22.00 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=32.9
Q ss_pred chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeech
Q 022818 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~ 282 (291)
|..++.+.+++.|.++|+-+.+-..-... +.-..+.-.||..||+.+.+
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~S--GdkIVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITTS--GDKIVVITADAIKIELSETE 63 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEec--CCEEEEEEcceEEEEEEeee
Confidence 56778888999999999976544332222 22334555678999988764
No 196
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.37 E-value=39 Score=21.89 Aligned_cols=52 Identities=19% Similarity=0.015 Sum_probs=33.1
Q ss_pred EEEEecchHHhHHHHHHHHHHhCCeeecCCccCCC-CCceEEEEECCCCceEE
Q 022818 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTV 277 (291)
Q Consensus 226 i~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~DpdG~~ie 277 (291)
+-+...|--.++.++-..+.+.|+.+...--...+ .....||++|.+|+.+.
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 34445565555555556669999987655333322 11366999999999873
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.55 E-value=26 Score=21.44 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.3
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCee
Q 022818 92 GFGHFAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
+...+.+.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45667899999999999999999875
No 198
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=56.72 E-value=72 Score=22.95 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=52.9
Q ss_pred ceeeEEEEEEeCCHHHHHHHHHhhcCCEEEEEeec-------CCCceeEEEEecCCCC--cceEEEeeecCCCCcccCCC
Q 022818 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV-------PEEKYSNAFLGFGPEQ--SHFVVELTYNYGVTSYDIGT 91 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~g~ 91 (291)
...|.-+.+.|++++.+.+-..+ -||.+...... |++ .....-.+++.. ......+....
T Consensus 39 t~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~-l~~I~~vl~d~diNldYiYAFv~ek--------- 107 (142)
T COG4747 39 TGDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGG-LSRIAEVLGDADINLDYIYAFVTEK--------- 107 (142)
T ss_pred ccCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCc-HHHHHHHHhhcCcCceeeeeeeecC---------
Confidence 44567789999999999999998 89987653221 111 000000011111 11222222221
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeec
Q 022818 92 GFGHFAIATEDVYKLVENIRAKGGNVTR 119 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~ 119 (291)
.-.-+.++|+|+|++...|.++|++...
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 1124578899999999999999998764
No 199
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.63 E-value=34 Score=21.53 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=21.1
Q ss_pred ceEEEEEe--CCHHHHHHHHHHcCCeeecC
Q 022818 93 FGHFAIAT--EDVYKLVENIRAKGGNVTRE 120 (291)
Q Consensus 93 ~~~i~~~v--~d~~~~~~~l~~~G~~~~~~ 120 (291)
...+.|++ .+.+.+.+.|+++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 33445555 58889999999999988764
No 200
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=55.26 E-value=37 Score=22.48 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=30.1
Q ss_pred chHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+..++.+.+ ++.|+++..- .... .+.+-+...|.+|..+|+.=.
T Consensus 30 ~~~~~~~~l----~~~G~~v~~v-e~~~-~g~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREV-EFDD-DGCYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHH----HhcCCceEEE-EEcC-CCEEEEEEEECCCCEEEEEEc
Confidence 456777777 9999965433 2211 224568899999999999644
No 201
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.63 E-value=27 Score=21.36 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.3
Q ss_pred ceeEEEEEecchHHhHHHHHHHHHHhCCee
Q 022818 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 251 (291)
Q Consensus 222 ~~~hi~~~v~di~~~~~~l~~~~~~~G~~~ 251 (291)
+...+.|.+++.+.+.+.| +++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L----~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVL----QERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHH----HHCCceE
Confidence 4567889999878888888 9999876
No 202
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=50.57 E-value=1.1e+02 Score=23.09 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCCC-----CcceEEEeeecCCCCcccCCCCceEEEE
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~g~~~~~i~~ 98 (291)
++||.+.|++.+.+.+|-+..+.+-..-.... -++--+..+.+... ..--.++++.+.. ..-...|+-|+-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~-INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENE-INGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccc-cCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEEE
Confidence 68999999999999999988775533222111 11222333333210 1112355554432 2224558999998
Q ss_pred EeCC
Q 022818 99 ATED 102 (291)
Q Consensus 99 ~v~d 102 (291)
-++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 8854
No 203
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=49.49 E-value=52 Score=28.11 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=34.0
Q ss_pred EEEEEEe-----CCHHHHHHHHHhhcCCEEEEEeecCCCceeEEEEecCC
Q 022818 25 LHAVYRV-----GDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP 69 (291)
Q Consensus 25 ~hv~l~v-----~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 69 (291)
+|+.|.+ ..++...+++.. ||+.....-+++..+....++...+
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p~d 84 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRPPD 84 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEETS
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecCCC
Confidence 8999983 267788889887 9999998888877776666665443
No 204
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=49.46 E-value=39 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=35.0
Q ss_pred EEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 226 i~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
-+|....+|...+.+...++..|+.+ .+|-..|..-.++..++.|+|+
T Consensus 11 ~s~d~~~LD~~~~~Ive~akrtg~~v-~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 11 KSFDHRLLDQVCREIVETAKRTGADV-KGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhCCee-eCCccCCCceEEEEEEeCCCCC
Confidence 34445567888888877778899987 4666666644577778999986
No 205
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=48.56 E-value=85 Score=22.52 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=32.1
Q ss_pred ecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
...++.+.+.+...++..|+.+. +|-..|..-.++...+.|+|+
T Consensus 28 ~~~Ld~~~~~Ii~~ak~~g~~v~-GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 28 LKSIEKVCADIITGAKEKNLKVT-GPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred HHHHHHHHHHHHHHHHHcCCEeE-CCccCCceeEEEEeeeCCCCC
Confidence 34578888888777788999875 555566644566778999986
No 206
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=44.26 E-value=11 Score=21.74 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=19.6
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcC
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALG 176 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG 176 (291)
++++..++.+.+.++..+||+..|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 4566667777889999999998764
No 207
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=43.66 E-value=51 Score=22.90 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=31.8
Q ss_pred ecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
...++.+.+.+...++..|+.+. +|-..|..-.++...+.|.|+
T Consensus 12 ~~~Ld~~~~~I~~~ak~~g~~~~-GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 12 VRSLEKVCAQIKRIAEKTGVRMS-GPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEE-CCccCCcceEEEEeeeCCCCC
Confidence 34477788888777788999864 566666644567778999974
No 208
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=43.55 E-value=45 Score=20.36 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=21.1
Q ss_pred cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeechh
Q 022818 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~~~ 283 (291)
-++++..++- ..+|-.+..... ....-..+|||.++.|++...
T Consensus 4 ~~ls~~ea~~----l~~Gr~l~~~~~------~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 4 RELSAEEARD----LRHGRRLPAAGP------PGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp EE--HHHHHH----HHTT---B-----------S-EEEE-TTS-EEEEEEEET
T ss_pred eECCHHHHHH----HhCCCccCCCCC------CceEEEECCCCcEEEEEEccC
Confidence 3445555555 678877643311 123558899999999997644
No 209
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=39.08 E-value=1.8e+02 Score=22.42 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=70.7
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeec------CCC----ceEEEEEECCCCCEEEEEeCCCCCC----CceEEEeeeC
Q 022818 97 AIATEDVYKLVENIRAKGGNVTREPGPL------KGG----TTHIAFVKDPDGYIFELIQRGPTPE----PLCQVMLRVG 162 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~------~~g----~~~~~~~~Dp~G~~iel~~~~~~~~----~~~~v~l~v~ 162 (291)
=+.+.|.+.+.++|.+.|+......... +++ ....+.++.-+|. ..+....+... .-..+.+.|.
T Consensus 7 K~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~-~~lT~Kgp~~~~~~~~~~E~e~~v~ 85 (174)
T TIGR00318 7 KAKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGE-KFVTYKGPKIDNESKTRKEIEFKIE 85 (174)
T ss_pred EEEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCc-EEEEEeCCccCCcceEEEEEEEEEC
Confidence 4667899999999999997643321111 110 0012334433332 22222212111 1123668889
Q ss_pred ChhhhHHHHHHhcCCeeeeeeccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEec---chHHhHHH
Q 022818 163 DLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEV 239 (291)
Q Consensus 163 d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~---di~~~~~~ 239 (291)
|.++....+. .||+++...+... ...+.++ ...+.+..-.+ -| .+.=|-..++ ++.++.++
T Consensus 86 d~~~~~~iL~-~LG~~~~~~v~K~---R~~~~l~------~~~i~lD~v~~-----lG-~FvEIE~~~~~~~~~~~~~~~ 149 (174)
T TIGR00318 86 DIENALQILK-KLGFKKVYEVIKK---RRIYQTN------ELNVSIDDVEG-----LG-FFLEIEKIINNINDKDLALEE 149 (174)
T ss_pred CHHHHHHHHH-HCCCeEEEEEEEE---EEEEEEC------CEEEEEEccCC-----Cc-cEEEEEEecCCccchHHHHHH
Confidence 9999999998 5999975443211 1222222 23444432111 11 2223333333 45677778
Q ss_pred HHHHHHHhCC
Q 022818 240 VNLVTQELGG 249 (291)
Q Consensus 240 l~~~~~~~G~ 249 (291)
+...+...|+
T Consensus 150 i~~~~~~LGl 159 (174)
T TIGR00318 150 IFEIINQLGI 159 (174)
T ss_pred HHHHHHHcCC
Confidence 8788888888
No 210
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=39.03 E-value=61 Score=27.70 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=22.9
Q ss_pred cCcceeEEEEEe------cchHHhHHHHHHHHHHhCCeee
Q 022818 219 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 219 ~~~~~~hi~~~v------~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.|..+.|++..| .||+++.+.| +++|+.+.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 677889999999 9999999999 99999876
No 211
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=37.32 E-value=74 Score=22.25 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=31.2
Q ss_pred cchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
..++.+.+.+...++..|+.+. +|-..|..-.++..++.|.|+
T Consensus 14 ~~Ld~~~~~I~~~~k~~g~~~~-GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 14 EDLDEVCDQIKEIAEKTGVDMS-GPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred HHHHHHHHHHHHHHHHcCCeEE-CCCcCCceeEEEEeeeCCCCC
Confidence 3477788888777788999875 555566544567778999965
No 212
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=35.47 E-value=72 Score=22.27 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=33.3
Q ss_pred EEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
+|....++...+.+...++..|+.+. +|-..|..-.++..++.|.++
T Consensus 15 S~d~~~L~~~~~~I~~~~k~~~~~~~-GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 15 SFNHELLNSSCKKIIDTASRTNATAV-GPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCeEe-CCcCCCcEEEEEEEecCCCCC
Confidence 34445677888888777788888865 555566544577888999875
No 213
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.12 E-value=91 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=18.4
Q ss_pred eCChhhhHHHHHHhcCCeeeee
Q 022818 161 VGDLGRSIKFYEKALGMKLLRT 182 (291)
Q Consensus 161 v~d~~~~~~fy~~~lG~~~~~~ 182 (291)
..|+.+++.||.+.||+++...
T Consensus 144 sa~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hhccHHHHHHHHHhcCceeeec
Confidence 3678889999999999997654
No 214
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=32.99 E-value=81 Score=21.99 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=31.6
Q ss_pred ecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
...++.....+...++..|+.+. +|-..|..-.++..++.|.++
T Consensus 15 ~~~L~~~~~~i~~~a~~~~i~v~-GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 15 HRLLDQSAKKIVETAKRTGAQVR-GPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE-CCcCCCcEEEEEEEeeCCCCC
Confidence 34467777777777788999874 555666644577889999986
No 215
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=32.83 E-value=1.1e+02 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=17.2
Q ss_pred EEEeCCHHHHHHHHHhhcCCEEEEE
Q 022818 28 VYRVGDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 28 ~l~v~d~~~~~~FY~~~lG~~~~~~ 52 (291)
.....+=+.|.++|++ |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 4455677889999998 99998754
No 216
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=31.94 E-value=88 Score=21.60 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
.|+.++..+|...|+. ..+.|++|+..+|-..
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgtn 52 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELGTN 52 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecCCC
Confidence 4688889999999853 5579999999987644
No 217
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.89 E-value=1.5e+02 Score=19.37 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=31.6
Q ss_pred EEEEecchHHhHHHHHHHHHHhCCeeecCCccCCC-CCceEEEEECCCCceEE
Q 022818 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTV 277 (291)
Q Consensus 226 i~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~DpdG~~ie 277 (291)
+-+.+.|--.++-++-..+.+.|+.+...--...+ .....+|++|.+|..+.
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 34445554444444444458899987655333322 11367999999999874
No 218
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=31.35 E-value=1.2e+02 Score=20.59 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=23.1
Q ss_pred EEEEEecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCceEEEeec
Q 022818 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 225 hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~~~ 281 (291)
+..|.|+| .+++.+| +..+-+ +.|+||..|.|.-+
T Consensus 46 ~a~FfV~D-~~tA~aL----k~vsrk-----------------I~~~dg~Ki~I~V~ 80 (88)
T PF09162_consen 46 RAQFFVED-ASTASAL----KDVSRK-----------------ICDEDGFKISIFVN 80 (88)
T ss_dssp EEEEEESS-HHHHHHH----HTTTTT-----------------EEBTTSBEE--EEE
T ss_pred EEEEEeCC-HHHHHHH----HHCCCc-----------------eECCCCCEEEEEEc
Confidence 68899999 7788888 666543 35666666666543
No 219
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=30.59 E-value=81 Score=21.84 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=31.9
Q ss_pred ecchHHhHHHHHHHHHHhCCeeecCCccCCCCCceEEEEECCCCc
Q 022818 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~DpdG~ 274 (291)
...++.....+...++..|+.+. +|-..|..-.++..++.|.++
T Consensus 12 ~~~L~~~~~~i~~~a~~~gi~~~-gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 12 HRLLDQSTKKIVETAKRTGAQVK-GPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCcee-cccCCCCEEEEEEEeeCCCCC
Confidence 34567777777777788999874 566666644577788999986
No 220
>PRK11700 hypothetical protein; Provisional
Probab=29.16 E-value=2.9e+02 Score=21.77 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=43.0
Q ss_pred CCceEEEeeeCChhhhHHHHHHhcCCeee--eeeccCCccceEEEeccccCCce---eEEEEeeecCcceeecCcceeEE
Q 022818 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLL--RTVDKPEYKYTLAMLGYAEEDQT---TVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 152 ~~~~~v~l~v~d~~~~~~fy~~~lG~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~~~~~~~~~~~~~~~~hi 226 (291)
..++|+.++|.+.+.+.+|-+..+..-.. .... .+-...++-+.-+-.-.+ ..+||.++.+ ..|+ -.|.-||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~I-NGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp-~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENII-NGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRYP-HEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhcccc-CCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceEE
Confidence 45899999999999999998776654322 1111 111122222221111112 3456654333 1232 2488899
Q ss_pred EEEecc
Q 022818 227 AISTDD 232 (291)
Q Consensus 227 ~~~v~d 232 (291)
-+.++.
T Consensus 115 ElVlp~ 120 (187)
T PRK11700 115 ELVLPG 120 (187)
T ss_pred EEEecC
Confidence 999874
No 221
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.57 E-value=1.2e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=21.5
Q ss_pred ceEEEEEeCC----HHHHHHHHHHcCCeeec
Q 022818 93 FGHFAIATED----VYKLVENIRAKGGNVTR 119 (291)
Q Consensus 93 ~~~i~~~v~d----~~~~~~~l~~~G~~~~~ 119 (291)
...+.++++| ++.+.+.|+++|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3456778888 89999999999998653
No 222
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.41 E-value=1.7e+02 Score=18.89 Aligned_cols=49 Identities=20% Similarity=0.045 Sum_probs=33.3
Q ss_pred EEEEecchHHhHHHHHHHHHHhCCeeecCCccC-CCC-CceEEEEECCCCc
Q 022818 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSI-PGL-NTKITSFVDPDGW 274 (291)
Q Consensus 226 i~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~~-~~~-~~~~~~~~DpdG~ 274 (291)
+-+.+.|-.....++...+.++|+.+...--.. ..+ .-..+|+.|++|.
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 455667777777788788899999987643221 221 1256889999887
No 223
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.45 E-value=2.7e+02 Score=20.97 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=41.8
Q ss_pred ceEEEeeeCChhhhHHHHHHhcCCeee--eeeccCCccceEEEeccccCCce---eEEEEeeecCcceeecCcceeEEEE
Q 022818 154 LCQVMLRVGDLGRSIKFYEKALGMKLL--RTVDKPEYKYTLAMLGYAEEDQT---TVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~~v~l~v~d~~~~~~fy~~~lG~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~~~~~~~~~~~~~~~~hi~~ 228 (291)
++|+.++|.+.+.+.+|-+..+..-.. .... .+-...++-+.-+-.-.+ ..+||.++.+ ..| .-.|.-||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~I-NGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Y-p~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEI-NGRPIALIKLEKPLQFAGWSISIVELPFPKD-KKY-PQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhcccc-CCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 689999999999999998876654322 1111 111122222221111112 2456654332 123 2248889999
Q ss_pred Eecc
Q 022818 229 STDD 232 (291)
Q Consensus 229 ~v~d 232 (291)
.++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 9874
No 224
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.21 E-value=1.7e+02 Score=18.52 Aligned_cols=53 Identities=21% Similarity=0.065 Sum_probs=35.9
Q ss_pred EEEEEecchHHhHHHHHHHHHHhCCeeecCCcc-CCC-CCceEEEEECCCCceEE
Q 022818 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGS-IPG-LNTKITSFVDPDGWKTV 277 (291)
Q Consensus 225 hi~~~v~di~~~~~~l~~~~~~~G~~~~~~~~~-~~~-~~~~~~~~~DpdG~~ie 277 (291)
-+.+.+.|-.....++...+..+|+.+...--. ... .--..+++.|++|..+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~ 57 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIG 57 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCC
Confidence 356667777788888888889999998764322 211 11255888999988643
No 225
>PRK00969 hypothetical protein; Provisional
Probab=27.16 E-value=1.5e+02 Score=27.21 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC------CCCCCceEEEeeeCChhhhHHHHHHh
Q 022818 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG------PTPEPLCQVMLRVGDLGRSIKFYEKA 174 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~------~~~~~~~~v~l~v~d~~~~~~fy~~~ 174 (291)
-.++++.+.|.+.|++...+....++ ....-++|.- .+++.... -+..++..|.|.-.++.++..||+++
T Consensus 324 ~t~~eA~~~~~~~gIel~~eg~~~dd---aVVV~Q~P~~-TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~ 399 (508)
T PRK00969 324 LTLKEAEELLEKLGIELEKEGYDGDD---AVVVEQTPET-TLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKV 399 (508)
T ss_pred CCHHHHHHHHHhCCcEEEecCCCCCC---cEEEecCCch-HHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHh
Confidence 46889999999999987754222221 1122244533 22222222 12457899999999999999999999
Q ss_pred cCCeee
Q 022818 175 LGMKLL 180 (291)
Q Consensus 175 lG~~~~ 180 (291)
.|+...
T Consensus 400 tGL~~~ 405 (508)
T PRK00969 400 TGLKTK 405 (508)
T ss_pred cCCccc
Confidence 998744
No 226
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.12 E-value=52 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHhhcCCEEEEE
Q 022818 32 GDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 32 ~d~~~~~~FY~~~lG~~~~~~ 52 (291)
.|..+++.||.+.||+.+..-
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 467788999999999998653
No 227
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.01 E-value=1.3e+02 Score=18.49 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.5
Q ss_pred EEEEEeCCHHHHHHHHHHcCCee
Q 022818 95 HFAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
.+-+.++|.+.+.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 34556688889999999999875
No 228
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.85 E-value=2.8e+02 Score=20.86 Aligned_cols=110 Identities=20% Similarity=0.331 Sum_probs=56.9
Q ss_pred eeeEEEEEEeCCHHHHHHHHHhhcCCEEEE---E--eecC---CCceeEEEEecCCCCcceEEEeeecCCCCcccCCCCc
Q 022818 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLR---K--RDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGF 93 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~---~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 93 (291)
.++.-.-..-.+.+++.+||.++|-=..+. + .+.+ .+++....+.+++. .. +.+.... ...+... ..
T Consensus 4 ~kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~-~f--~~ld~g~-~~~f~fn-eA 78 (151)
T COG3865 4 PKITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQ-SF--MALDGGP-NTSFKFN-EA 78 (151)
T ss_pred CcceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCe-EE--EEEcCCC-CcCCCcC-cc
Confidence 344433444489999999999998544332 1 1111 22344455555431 11 1121111 1111111 11
Q ss_pred eEEEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022818 94 GHFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 94 ~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~ 147 (291)
..+-+.++| +|+...+|...|... .. ...++|-.|.-|.+...
T Consensus 79 ~S~~v~~~~q~E~Drlwnal~~~g~e~----------~~-cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 79 FSFQVACDDQEEIDRLWNALSDNGGEA----------EA-CGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEEEcCCHHHHHHHHHHHhccCcch----------hc-ceeEecccCcEEEEcHH
Confidence 233344454 777888888888521 11 25689999988877654
No 229
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=26.67 E-value=2.3e+02 Score=19.85 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEE--ECCCCCEE--EEEeCCCCCCCceEEEeeeCChhhhHHHHH
Q 022818 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV--KDPDGYIF--ELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~--~Dp~G~~i--el~~~~~~~~~~~~v~l~v~d~~~~~~fy~ 172 (291)
.+.+.+.++|+++++-.... ...+++.. ++|+ .+..|..+ |+.-.. ...-..+++.+.+.+.+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~-~~~~~~~~-~~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIAS-GKVDNGQK-FFYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEE-EECTT-EE-EEEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEec-CCCCcccc-EEEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 57899999999999875543 22332333 3444 56665443 333332 2335688899999876666654
No 230
>PTZ00330 acetyltransferase; Provisional
Probab=26.18 E-value=94 Score=22.53 Aligned_cols=25 Identities=12% Similarity=0.438 Sum_probs=18.7
Q ss_pred eEEEEEEeCCHHHHHHHHHhhcCCEEEE
Q 022818 24 FLHAVYRVGDLDRTIKFYTECFGMKLLR 51 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~ 51 (291)
+..+.+.++ +.+.+||++ +||+...
T Consensus 116 ~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 116 CYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 445566664 579999998 9999865
No 231
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=25.66 E-value=40 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=21.6
Q ss_pred hCCeeecCCccCCCCCceEEEEECCCCceEEEe
Q 022818 247 LGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 247 ~G~~~~~~~~~~~~~~~~~~~~~DpdG~~iel~ 279 (291)
.|+++...|...+ ...+++.||||+-.-++
T Consensus 197 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 197 PTIDFTKLPSKQP---VLLFNVKQPSSYSCMLC 226 (228)
T ss_pred ccceeeecccccc---eEEEEeeCCCccchhhc
Confidence 6777776665432 36788999999977654
No 232
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.46 E-value=85 Score=15.13 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.0
Q ss_pred EEEEECCCCceEE
Q 022818 265 ITSFVDPDGWKTV 277 (291)
Q Consensus 265 ~~~~~DpdG~~ie 277 (291)
...+.|++|++|-
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 3567899998874
No 233
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=24.44 E-value=2.8e+02 Score=20.06 Aligned_cols=115 Identities=13% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCCCceEEEeeeCChhhhHHHHHHhcCCeeeee
Q 022818 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRT 182 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~Dp~G~~iel~~~~~~~~~~~~v~l~v~d~~~~~~fy~~~lG~~~~~~ 182 (291)
+..+...|.+.|+.+.. +.+.|. +.+.-+.+.|++.+.+.+-..+ -||.+...
T Consensus 17 L~~~~~~L~eagINiRA------------~tiAdt--------------~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINIRA------------FTIADT--------------GDFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCceEE------------EEeccc--------------cCcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 67788889999976421 334433 2344566778888888877766 67775432
Q ss_pred e----ccCCccceEEEeccccCCceeEEEEeeecCcceeecCcceeEEEEEecchHHhHHHHHHHHHHhCCeeec
Q 022818 183 V----DKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 253 (291)
Q Consensus 183 ~----~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hi~~~v~di~~~~~~l~~~~~~~G~~~~~ 253 (291)
- ..++..-.+..+..--+.....++..+..-.. ..-.-+-+.|+|+|++.+.| +++|+.+..
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~e-----k~KAlli~r~ed~d~~~~aL----ed~gi~~~~ 135 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTE-----KQKALLIVRVEDIDRAIKAL----EDAGIKLIG 135 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeec-----CceEEEEEEhhHHHHHHHHH----HHcCCeecC
Confidence 1 01110000100000000011222222211110 12246788999999999999 999998763
No 234
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.41 E-value=1.3e+02 Score=19.61 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.6
Q ss_pred EecchHHhHHHHHHHHHHhCCee
Q 022818 229 STDDVYKSAEVVNLVTQELGGKI 251 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~ 251 (291)
..+|+|+++++|..++++.|..-
T Consensus 23 ~~~d~d~Al~eM~e~A~~lGAnA 45 (74)
T TIGR03884 23 ESDNVDEIVENLREKVKAKGGMG 45 (74)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCE
Confidence 35699999999999999999863
No 235
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=21.09 E-value=88 Score=19.85 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=16.6
Q ss_pred eeEEEEEEeC-CHHHHHHHHHhhcCCE
Q 022818 23 RFLHAVYRVG-DLDRTIKFYTECFGMK 48 (291)
Q Consensus 23 ~i~hv~l~v~-d~~~~~~FY~~~lG~~ 48 (291)
++..+.+.+. +-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 3555666555 44458899997 8875
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=21.00 E-value=70 Score=17.01 Aligned_cols=19 Identities=37% Similarity=0.821 Sum_probs=14.5
Q ss_pred eeCChhhhHHHHHHhcCCe
Q 022818 160 RVGDLGRSIKFYEKALGMK 178 (291)
Q Consensus 160 ~v~d~~~~~~fy~~~lG~~ 178 (291)
...|.++++.+|++.|.+.
T Consensus 11 ~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HCT-HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 3578999999999987554
No 237
>smart00300 ChSh Chromo Shadow Domain.
Probab=20.68 E-value=2.2e+02 Score=17.65 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=25.6
Q ss_pred ECCCCCEEEEEeCCC-CCCCceEEEeeeCChhhhHHHHHHhcCCe
Q 022818 135 KDPDGYIFELIQRGP-TPEPLCQVMLRVGDLGRSIKFYEKALGMK 178 (291)
Q Consensus 135 ~Dp~G~~iel~~~~~-~~~~~~~v~l~v~d~~~~~~fy~~~lG~~ 178 (291)
.|-+|.+.-++.-.. ....+..-.+....+...++||.+.|-|+
T Consensus 16 ~d~~G~l~flikwk~~~~~lVp~~~~~~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 16 TKDDGELTFLIKWKDDAASLVPNKEANVKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred ecCCCeEEEEEEEeCCcEEEEEHHHHHHHChHHHHHHHHHhCccC
Confidence 344555544444333 22222222356678999999999988764
No 238
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=20.54 E-value=1.3e+02 Score=19.08 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.1
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEE
Q 022818 26 HAVYRVGDLDRTIKFYTECFGMKL 49 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~ 49 (291)
++.+.+ -+.+.+||++ +||++
T Consensus 59 ~i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 59 KIFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEEE--EHHHHHHHHH-TTEEE
T ss_pred cEEEEE--cHHHHHHHHH-CcCCC
Confidence 344444 3689999998 99874
Done!