BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022820
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 143/286 (50%), Gaps = 16/286 (5%)
Query: 5 VCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPS 64
+ S ++P HL+YF F GRV+ L + HR + F Y + K + L+D+ D
Sbjct: 151 INPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAE 210
Query: 65 LYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSL 124
+Y+S +LE + + L LTF + E G TV+L P GR++ V N+++YV L
Sbjct: 211 VYNSLNWMLENSIDGV----LDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVEL 266
Query: 125 LIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWK 184
+ R V + EQ F GF +++ P F ELE +L G I +EDWK
Sbjct: 267 YTQWRIVDRVQEQFKAFMDGFNELI--PEDLVTVFDERELE----LLIGGIAEIDIEDWK 320
Query: 185 AHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS-----RL 239
HT+Y GY+E+D I WFWK V E EQR LL F T +PV GF L R
Sbjct: 321 KHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRF 380
Query: 240 HIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
I K E +LP SHTCF R+ P Y M +L + +E +G
Sbjct: 381 TIEKAGE-VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIG 425
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 145/285 (50%), Gaps = 13/285 (4%)
Query: 5 VCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPS 64
+ AS ++P HL YF F GR IA+AL H + F FY ++ K + L+D+ DP
Sbjct: 119 INPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPE 178
Query: 65 LYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSL 124
Y+S + E + E D L + F + E LG K+ +L P G ++ V +N+E+Y+ +
Sbjct: 179 FYNSLIWVKENNIEECD---LEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRM 235
Query: 125 LIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWK 184
+ R + EQT F +GF +IL P+ Q+F + ELE +L Q I + DW+
Sbjct: 236 VAEWRLSRGVEEQTQAFFEGFNEIL--PQQYLQYFDAKELE----VLLCGMQEIDLNDWQ 289
Query: 185 AHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLH 240
H Y Y QI+WFW+ V E+ E+R LL F T LPV GFA L +
Sbjct: 290 RHAIYRRYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKF 349
Query: 241 IYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
+ V + LP SHTCF RL P Y S + ++L +E G
Sbjct: 350 CIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEG 394
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 143/285 (50%), Gaps = 14/285 (4%)
Query: 3 FLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDAD 62
+ + +S +P HL YF F GR++A A+ + F R FY + GK + D+ D
Sbjct: 122 YTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 181
Query: 63 PSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYV 122
Y +LE D + + G LTF EV+E G + +L P G ++ V +N+++YV
Sbjct: 182 YHFYQGLVYLLEND---VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYV 238
Query: 123 SLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVED 182
L+ + R +I +Q + F +GF +I+ P+ F ELE +L I ++D
Sbjct: 239 HLVCQMRMTGAIRKQLAAFLEGFYEII--PKRLISIFTEQELE----LLISGLPTIDIDD 292
Query: 183 WKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA-----S 237
K++TEY+ Y+ N QI WFW+ + R L F T +P++GFA L
Sbjct: 293 LKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQ 352
Query: 238 RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQE 282
+ I++ DRLP++HTCF +L P+Y S + L + QE
Sbjct: 353 KFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE 397
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 17/292 (5%)
Query: 3 FLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDAD 62
+ + +S +P HL YF F GR++A A+ + F R FY + GK + D+ D
Sbjct: 105 YTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESED 164
Query: 63 PSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYV 122
Y +LE D + + G LTF EV+E G + +L P G ++ V +N+++YV
Sbjct: 165 YHFYQGLVYLLEND---VSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYV 221
Query: 123 SLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVED 182
L+ + R +I +Q + F +GF +I+ P+ F ELE +L I ++D
Sbjct: 222 HLVCQMRMTGAIRKQLAAFLEGFYEII--PKRLISIFTEQELE----LLISGLPTIDIDD 275
Query: 183 WKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA-----S 237
K++TEY+ Y+ N QI WFW+ + R L F T +P++GFA L
Sbjct: 276 LKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQ 335
Query: 238 RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFG 289
+ I++ DRLP++HTCF +L P+Y S + L + QE CS G
Sbjct: 336 KFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE---CSEG 384
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 143/282 (50%), Gaps = 13/282 (4%)
Query: 5 VCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPS 64
+ AS ++P HL YFCF GR IA+AL H + F FY ++ K ++++D+ D
Sbjct: 100 INPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTE 159
Query: 65 LYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSL 124
Y+S I + + I+ GL + F ++E LG + +L GG ++ V +N+++Y+ L
Sbjct: 160 FYNSLIWIRDNN---IEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGL 216
Query: 125 LIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWK 184
+ RF + EQT F GF +++ P Q+F ELE ++ Q + + DW+
Sbjct: 217 MTEWRFSRGVQEQTKAFLDGFNEVV--PLQWLQYFDEKELE----VMLCGMQEVDLADWQ 270
Query: 185 AHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLH 240
+T Y Y N QIIWFW+ V E E R LL F T LP+ GFA L +
Sbjct: 271 RNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKF 330
Query: 241 IYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQE 282
+ V LP SHTCF RL P Y S + ++L +E
Sbjct: 331 CIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE 372
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 143/276 (51%), Gaps = 16/276 (5%)
Query: 15 HLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILE 74
HL YF F GRV +A+ H + F R FY + K I+L D+ D Y+S + ILE
Sbjct: 117 HLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWILE 176
Query: 75 MDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSI 134
D +D L F+ + E G EL GG + V +KN+++Y+ L+I+ RFV I
Sbjct: 177 NDPTELD-----LRFIIDEELFGQTHQHELKNGGSEIVVTNKNKKEYIYLVIQWRFVNRI 231
Query: 135 SEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEY-NGYK 193
+Q + F +GF +++ P+ + F ELE +L + V DW+ HT+Y NGY
Sbjct: 232 QKQMAAFKEGFFELI--PQDLIKIFDENELE----LLMCGLGDVDVNDWREHTKYKNGYS 285
Query: 194 ENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL-ASRLHIYKTVE---PAD 249
N I WFWK V M +E+R LL F T +P+ GFA L S TVE +
Sbjct: 286 ANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQWGTPE 345
Query: 250 RLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
+LP +HTCF RL P Y S + D+L++ + G
Sbjct: 346 KLPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQG 381
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 138/276 (50%), Gaps = 16/276 (5%)
Query: 15 HLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILE 74
HL YF F GRV LA+ H + F R FY + GK I+L D+ D Y+S K ILE
Sbjct: 116 HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILE 175
Query: 75 MDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSI 134
D +D L F + E G V+L P G + V ++N+ +Y+ L+I+ RFV +
Sbjct: 176 NDPTELD-----LMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRV 230
Query: 135 SEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEY-NGYK 193
+Q + F +GF ++L P + F ELE +L + V DW+ H+ Y NGY
Sbjct: 231 QKQMNAFLEGFTELL--PIDLIKIFDENELE----LLMCGLGDVDVNDWRQHSIYKNGYC 284
Query: 194 ENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLHIYKTVEPAD 249
N I WFWK V M AE+R LL F T +P+ GFA L +L + +
Sbjct: 285 PNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPE 344
Query: 250 RLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
+LP +HT F RL P Y + + ++L + + G
Sbjct: 345 KLPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQG 380
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 138/276 (50%), Gaps = 16/276 (5%)
Query: 15 HLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILE 74
HL YF F GRV LA+ H + F R FY + GK I+L D+ D Y+S K ILE
Sbjct: 116 HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILE 175
Query: 75 MDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSI 134
D +D L F + E G V+L P G + V ++N+ +Y+ L+I+ RFV +
Sbjct: 176 NDPTELD-----LMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRV 230
Query: 135 SEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEY-NGYK 193
+Q + F +GF ++L P + F ELE +L + V DW+ H+ Y NGY
Sbjct: 231 QKQMNAFLEGFTELL--PIDLIKIFDENELE----LLMCGLGDVDVNDWRQHSIYKNGYC 284
Query: 194 ENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLHIYKTVEPAD 249
N I WFWK V M AE+R LL F T +P+ GFA L +L + +
Sbjct: 285 PNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPE 344
Query: 250 RLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
+LP +HT F RL P Y + + ++L + + G
Sbjct: 345 KLPRAHTSFNRLDLPPYETFEDLREKLLMAVENAQG 380
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 132/267 (49%), Gaps = 16/267 (5%)
Query: 15 HLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILE 74
HL YF F GRV LA+ H + F R FY GK I+L D D Y+S K ILE
Sbjct: 131 HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWILE 190
Query: 75 MDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSI 134
D +D L F + E G V+L P G + V ++N+ +Y+ L+I+ RFV +
Sbjct: 191 NDPTELD-----LXFCIDEENFGQTYQVDLKPNGSEIXVTNENKREYIDLVIQWRFVNRV 245
Query: 135 SEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEY-NGYK 193
+Q + F +GF ++L P + F ELE +L + V DW+ H+ Y NGY
Sbjct: 246 QKQXNAFLEGFTELL--PIDLIKIFDENELE----LLXCGLGDVDVNDWRQHSIYKNGYC 299
Query: 194 ENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLHIYKTVEPAD 249
N I WFWK V AE+R LL F T +P GFA L +L + +
Sbjct: 300 PNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSRVPXNGFAELYGSNGPQLFTIEQWGSPE 359
Query: 250 RLPTSHTCFYRLCFPSYPSMAIMGDRL 276
+LP +HTCF RL P Y + + ++L
Sbjct: 360 KLPRAHTCFNRLDLPPYETFEDLREKL 386
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 135/286 (47%), Gaps = 15/286 (5%)
Query: 5 VCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPS 64
+ S V+P HL YF F GR+ A+ H + F FY QL GK I+L+D DP
Sbjct: 101 INPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPD 160
Query: 65 LYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSL 124
L++S ILE D + L TF E G EL P G+S+ VN +N+++YV L
Sbjct: 161 LHNSLVWILENDITGV----LDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRL 216
Query: 125 LIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWK 184
+ RF+ I Q KGF +++ P+ + F ELE ++ I V DWK
Sbjct: 217 YVNWRFLRGIEAQFLALQKGFNEVI--PQHLLKTFDEKELE----LIICGLGKIDVNDWK 270
Query: 185 AHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGL----ASRLH 240
+T + + WFWK V E+R LL F T +P++GF L RL
Sbjct: 271 VNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLF 330
Query: 241 IYKTVEP-ADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVG 285
++ + LP +HTCF R+ P Y S + ++L +E G
Sbjct: 331 TIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCG 376
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 11/260 (4%)
Query: 19 FCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAE 78
F G V+ LA+ + + V F V Y +L GK + D+ D+ P LY S K +LE +
Sbjct: 95 FTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGN 154
Query: 79 FIDSDGLGLTF-VREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQ 137
D + +TF + + + G+ +L G + + ++NR+++V+L + S+ +Q
Sbjct: 155 V--EDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQ 212
Query: 138 TSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKEND 196
F +GF ++ N K F E+E +L + + + + TEY+ GY +
Sbjct: 213 FKAFRRGFH-MVTNESPLKYLFRPEEIE----LLICGSRNLDFQALEETTEYDGGYTRDS 267
Query: 197 AQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHIYKTVEPADRLPTSHT 256
I FW+IV EQ+++ L F T PV G L ++ I K +RLPTSHT
Sbjct: 268 VLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDTERLPTSHT 325
Query: 257 CFYRLCFPSYPSMAIMGDRL 276
CF L P Y S + +RL
Sbjct: 326 CFNVLLLPEYSSKEKLKERL 345
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 201 WFWKIVGEMPAEQRKILLFFWTSVKHLPV--EGFAGLASRLHIYKTVEPAD--RLPTSHT 256
WFW IV +M +R+ L++FWTS LP EGF + S T+ P D LPT++T
Sbjct: 32 WFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSI-----TIRPPDDQHLPTANT 86
Query: 257 CFYRLCFPSYPSMAIMGDRL 276
C RL P Y S I+ +L
Sbjct: 87 CISRLYVPLYSSKQILKQKL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,559,584
Number of Sequences: 62578
Number of extensions: 343196
Number of successful extensions: 808
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 13
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)