Query 022820
Match_columns 291
No_of_seqs 174 out of 1144
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 100.0 7.1E-79 1.5E-83 600.3 24.6 280 2-291 588-872 (872)
2 smart00119 HECTc Domain Homolo 100.0 6.8E-77 1.5E-81 544.2 28.0 278 2-291 55-336 (336)
3 cd00078 HECTc HECT domain; C-t 100.0 1.8E-76 3.8E-81 546.2 27.6 277 2-289 74-352 (352)
4 PF00632 HECT: HECT-domain (ub 100.0 9.7E-72 2.1E-76 508.5 22.7 282 3-291 24-317 (317)
5 KOG0939 E3 ubiquitin-protein l 100.0 7.1E-72 1.5E-76 524.2 19.3 279 2-291 437-720 (720)
6 KOG0942 E3 ubiquitin protein l 100.0 6.2E-71 1.4E-75 528.9 18.7 280 3-291 717-1001(1001)
7 KOG0941 E3 ubiquitin protein l 100.0 4.5E-68 9.7E-73 507.7 23.2 275 3-291 575-850 (850)
8 KOG0170 E3 ubiquitin protein l 100.0 2.4E-64 5.3E-69 458.5 22.2 279 2-291 311-621 (621)
9 KOG4427 E3 ubiquitin protein l 100.0 2.7E-62 5.8E-67 460.2 20.1 280 2-291 789-1096(1096)
10 KOG0940 Ubiquitin protein liga 100.0 1.6E-44 3.6E-49 327.8 10.7 265 2-281 89-358 (358)
11 KOG0943 Predicted ubiquitin-pr 100.0 8.6E-43 1.9E-47 338.5 15.6 276 3-291 2730-3015(3015)
12 PF14698 ASL_C2: Argininosucci 35.4 1.3E+02 0.0028 20.7 5.2 46 16-64 19-65 (70)
13 PHA02681 ORF089 virion membran 33.8 24 0.00051 25.4 1.2 21 207-227 50-70 (92)
14 PF05293 ASFV_L11L: African sw 28.9 60 0.0013 22.1 2.4 36 22-57 26-65 (78)
15 KOG3817 Uncharacterized conser 27.3 1.2E+02 0.0026 28.3 4.8 93 119-231 280-375 (452)
16 COG4106 Tam Trans-aconitate me 25.6 32 0.0007 29.9 0.9 57 163-223 166-228 (257)
17 PF02758 PYRIN: PAAD/DAPIN/Pyr 24.2 85 0.0018 22.4 2.8 28 201-228 4-36 (83)
18 PF03368 Dicer_dimer: Dicer di 23.7 55 0.0012 23.8 1.7 33 224-265 9-41 (90)
19 COG4807 Uncharacterized protei 20.5 98 0.0021 24.4 2.5 62 62-145 3-64 (155)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-79 Score=600.34 Aligned_cols=280 Identities=36% Similarity=0.658 Sum_probs=269.6
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
.++|||.+.++|+|+++|+|+|++||+||++++.++++|+++|||+|++++++++|++++||++|++|.+|++++.++.
T Consensus 588 ~~~~n~~s~~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~- 666 (872)
T COG5021 588 TLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDET- 666 (872)
T ss_pred ccCcCccccCCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcc-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
.++++|+++....|...+|||||||++++||.+||++||.++++|++.+++++|++||..||.+|||..+++ +
T Consensus 667 --~l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~-----i 739 (872)
T COG5021 667 --ILDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQ-----I 739 (872)
T ss_pred --eeeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHh-----h
Confidence 499999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS---- 237 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~---- 237 (291)
|+++||+.|+||.+..||++|||++|.|+||++++++|.|||+++++|+.|+|++|||||||++|+|++||+.|++
T Consensus 740 F~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~ 819 (872)
T COG5021 740 FDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGV 819 (872)
T ss_pred cCHHHHHHHHCCCCccccHHHHhhcccccccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCccc
Confidence 8999999999998433999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 238 -RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 238 -~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
+|+|++.+.++++||+||||||+|+||.|+|||+|++||.+||++ +.|||++
T Consensus 820 ~kf~I~~~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~E--g~GFg~~ 872 (872)
T COG5021 820 RKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINE--GAGFGLL 872 (872)
T ss_pred ceeeeecCCCccccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHh--ccCcCcC
Confidence 889999999999999999999999999999999999999999998 6799985
No 2
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=6.8e-77 Score=544.23 Aligned_cols=278 Identities=39% Similarity=0.683 Sum_probs=258.8
Q ss_pred ceeeCCCCCC-CcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHH-hccccc
Q 022820 2 HFLVCSASKV-HPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQIL-EMDAEF 79 (291)
Q Consensus 2 ~~~pnp~~~~-~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~-~~~~~~ 79 (291)
+++|||.+.. +++++++|+++|++||+|++++.++|++|||+|||.|+|.+++++||+++||++++++++|+ +.+..
T Consensus 55 ~~~~~p~~~~~~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~- 133 (336)
T smart00119 55 LLYPNPRAFFANPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTS- 133 (336)
T ss_pred eEEeCCCccccchHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCc-
Confidence 5789998764 58899999999999999999999999999999999999999999999999999999999994 44332
Q ss_pred cccccccceeeeeee-ccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHh
Q 022820 80 IDSDGLGLTFVREVE-ELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQF 158 (291)
Q Consensus 80 ~~~~~l~l~f~~~~~-~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~ 158 (291)
+.++++|++... ..|...++||++||++++||.+|+++||++++++++.++++.|++|||+||++|+|.+.|+
T Consensus 134 ---~~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~--- 207 (336)
T smart00119 134 ---EELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLR--- 207 (336)
T ss_pred ---ccccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhh---
Confidence 348899985443 3677789999999999999999999999999999999999999999999999999998776
Q ss_pred cccCCHHHHHHHhcCCCCCCchHHhhcccccC-CCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc
Q 022820 159 FLSLELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS 237 (291)
Q Consensus 159 ~~~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~ 237 (291)
+|+|+||+.++||. ++||+++|+++++|. ||++++++|+|||+|+++||+++|++||+|+||++|+|++|+++++|
T Consensus 208 --~f~~~eL~~licG~-~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~ 284 (336)
T smart00119 208 --LFTPEELELLICGS-PEIDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSP 284 (336)
T ss_pred --CCCHHHHHHHhCCC-CCCCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCC
Confidence 88999999999998 689999999999996 89999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 238 RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 238 ~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
+|+|+..+.++++||+||||||+|+||.|+|+|+||+||++||++ ++||||.
T Consensus 285 ~~~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~--~~gF~l~ 336 (336)
T smart00119 285 KFTIRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINE--GKGFGLS 336 (336)
T ss_pred ceEEEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHc--CCCCCCC
Confidence 999998877899999999999999999999999999999999997 6999985
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=1.8e-76 Score=546.19 Aligned_cols=277 Identities=39% Similarity=0.694 Sum_probs=263.3
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
+|+|||.+..+++++++|+++|++||+|++++.+++++||++|||+|+|.++|++||+++||++++++++|++++.+
T Consensus 74 ~~~~~p~~~~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~--- 150 (352)
T cd00078 74 LLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGD--- 150 (352)
T ss_pred eEEeCCCcccchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCc---
Confidence 58999999977899999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cccccceeeeeeec-cCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhcc
Q 022820 82 SDGLGLTFVREVEE-LGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFL 160 (291)
Q Consensus 82 ~~~l~l~f~~~~~~-~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~ 160 (291)
.+.++++|++..+. .++..++||++||++++||.+|+++||+++++++++++++.|++|||+||++|+|...|+
T Consensus 151 ~~~l~l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~----- 225 (352)
T cd00078 151 EDDLELTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLS----- 225 (352)
T ss_pred hhhhcceeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhh-----
Confidence 24588999988776 788899999999999999999999999999999999999999999999999999998776
Q ss_pred cCCHHHHHHHhcCCCCCCchHHhhcccccC-CCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCcce
Q 022820 161 SLELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRL 239 (291)
Q Consensus 161 ~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~~~ 239 (291)
+|+|+||+.++||. ++||+++|+++++|+ ||+.++++|+|||+++++||++||++||+|+||++|+|++||++++++|
T Consensus 226 ~f~~~eL~~lvcG~-~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i 304 (352)
T cd00078 226 LFTPEELELLICGS-EDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKF 304 (352)
T ss_pred CCCHHHHHHHhCCC-CCCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCe
Confidence 88999999999998 799999999999997 5777999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccc
Q 022820 240 HIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFG 289 (291)
Q Consensus 240 ~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg 289 (291)
+|.+.+.++++||+||||||+|+||.|+|+|+||+||++||++ ++|||
T Consensus 305 ~i~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~--~~gF~ 352 (352)
T cd00078 305 TIRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINE--GAGFG 352 (352)
T ss_pred EEEECCCCCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHHc--CCCCC
Confidence 9999887799999999999999999999999999999999998 67997
No 4
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=9.7e-72 Score=508.48 Aligned_cols=282 Identities=37% Similarity=0.625 Sum_probs=237.7
Q ss_pred eeeCCCC-------CCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHh-CCCCChhhHHhhCHHHHHHHHHHHh
Q 022820 3 FLVCSAS-------KVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLA-GKYISLEDIRDADPSLYSSCKQILE 74 (291)
Q Consensus 3 ~~pnp~~-------~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~-g~~~t~~Dl~~~D~~l~~~l~~l~~ 74 (291)
++|||.. ..++.++++|+++|++||+||++|.+++++||++|||+|+ |.+++++|++++||++++++++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~ 103 (317)
T PF00632_consen 24 FWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLD 103 (317)
T ss_dssp EEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHH
T ss_pred EeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhhee
Confidence 5677652 2356789999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccccccccccccceeeeeeec-cCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcch
Q 022820 75 MDAEFIDSDGLGLTFVREVEE-LGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPR 153 (291)
Q Consensus 75 ~~~~~~~~~~l~l~f~~~~~~-~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~ 153 (291)
++.++.+.+.++++|+++... .|..++++|++||+++.||.+|+++||++++++++.++++.|+++||+||.+|+|...
T Consensus 104 ~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~ 183 (317)
T PF00632_consen 104 MDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLEL 183 (317)
T ss_dssp SHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHH
T ss_pred ccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHH
Confidence 877665556789999976543 3345679999999999999999999999999999999899999999999999999987
Q ss_pred hhHHhcccCCHHHHHHHhcCCCCC-CchHHhhcccccC-CCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCC
Q 022820 154 LQKQFFLSLELEDLDRMLFGSEQA-ICVEDWKAHTEYN-GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEG 231 (291)
Q Consensus 154 L~~~~~~~~~~~eL~~l~cG~~~~-i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G 231 (291)
++ .|+|+||+.++||. ++ ||+++|+++++|+ ||+++++.++|||++|++||+++|++||+|+||++|+|++|
T Consensus 184 l~-----~f~~~eL~~l~~G~-~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G 257 (317)
T PF00632_consen 184 LS-----LFSPEELERLLCGS-PEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGG 257 (317)
T ss_dssp HT-----TSSHHHHHHHHHCB-SS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTG
T ss_pred HH-----cCCHHHHHHHhcCc-cccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccc
Confidence 76 88999999999998 57 9999999999997 89999999999999999999999999999999999999999
Q ss_pred CcCCCcceEEeecCC-CCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 232 FAGLASRLHIYKTVE-PADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 232 ~~~l~~~~~i~~~~~-~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
++.++++|+|...+. ++++||+||||||+|+||.|+|+|+||+||++||++ +++||||.
T Consensus 258 ~~~l~~~i~i~~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~-~~~gF~~s 317 (317)
T PF00632_consen 258 FSNLNPKITIQFSDDSPDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIEN-GQEGFGLS 317 (317)
T ss_dssp GGGGE-EEEEEEESC-STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHH-T-------
T ss_pred cccccceeEEeecCCCccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHc-CCCCcCcC
Confidence 999989999998775 478999999999999999999999999999999998 44899984
No 5
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=7.1e-72 Score=524.23 Aligned_cols=279 Identities=36% Similarity=0.600 Sum_probs=269.1
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
++.|||.+.++|+||++|+|+||++|+|+++|..+++.|++.|||+++|.++++.|++..||+.|+++.+|++++.++.
T Consensus 437 t~~pn~~s~~np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~DP~y~k~l~~il~ndis~~- 515 (720)
T KOG0939|consen 437 TFHPNPNSYVNPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESADPEYYKSLVWILKNDISDT- 515 (720)
T ss_pred EEeeCCcccCChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhcChHHhhceeehhcCCcccc-
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
++++|+.+.+..|..+++||+|||+++.||.+||.+||++++++||.+++++|++||.+||+++||...+. +
T Consensus 516 ---l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~-----i 587 (720)
T KOG0939|consen 516 ---LELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLS-----I 587 (720)
T ss_pred ---eeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH-----H
Confidence 89999999999998899999999999999999999999999999999999999999999999999998666 8
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS---- 237 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~---- 237 (291)
|++.||+.++||. ++||++||+++|+|+||+.++++|+|||++|++|++++|.+||+|+||++++|++||+.+.+
T Consensus 588 f~E~ELELLisGl-peidvdd~k~nt~y~~~~~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~ 666 (720)
T KOG0939|consen 588 FDEQELELLISGL-PEIDVDDLKANTEYLGYTKASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGV 666 (720)
T ss_pred hhhHHHHHHHcCC-CcccHHHHHhhhhhhcccccchHHHHHHHHHhhhcHHHHHhhHeeecccccCCcccccccccCCcc
Confidence 8999999999998 79999999999999999999999999999999999999999999999999999999998875
Q ss_pred -ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 238 -RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 238 -~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
+|.|+...+..++||+||||||+|+||.|.|||.++++|+.||.+ +++|||+|
T Consensus 667 q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~LllAi~E-~segfg~a 720 (720)
T KOG0939|consen 667 QKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESLLLAINE-GSEGFGMA 720 (720)
T ss_pred eeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHHHHHHHh-hhhccCcC
Confidence 899999888899999999999999999999999999999999998 79999997
No 6
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-71 Score=528.95 Aligned_cols=280 Identities=28% Similarity=0.499 Sum_probs=270.1
Q ss_pred eeeCCCCCC--CcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCC--ChhhHHhhCHHHHHHHHHHHhcccc
Q 022820 3 FLVCSASKV--HPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYI--SLEDIRDADPSLYSSCKQILEMDAE 78 (291)
Q Consensus 3 ~~pnp~~~~--~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~--t~~Dl~~~D~~l~~~l~~l~~~~~~ 78 (291)
+||||.+.. +.+++++|.|+|+++|+||+.|..++++|+..|.++|+|.+- .++||.++||++|+.|..|++++++
T Consensus 717 LYPNp~~~~l~~~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gd 796 (1001)
T KOG0942|consen 717 LYPNPTAAMLLDVDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGD 796 (1001)
T ss_pred ecCCCCchhhhhhHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCC
Confidence 799998874 677999999999999999999999999999999999999876 9999999999999999999999987
Q ss_pred ccccccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHh
Q 022820 79 FIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQF 158 (291)
Q Consensus 79 ~~~~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~ 158 (291)
++ ++++++|++...+.|..++|||+|||++++||.+|+-+||.++++|+|+.+++.|+.|||+||..|||++++.
T Consensus 797 di--~eL~L~FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~--- 871 (1001)
T KOG0942|consen 797 DI--SELQLDFTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLR--- 871 (1001)
T ss_pred ch--hhccceEEEeccccccceeEEeccCCccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHH---
Confidence 76 5699999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCHHHHHHHhcCCCCCCchHHhhccccc-CCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc
Q 022820 159 FLSLELEDLDRMLFGSEQAICVEDWKAHTEY-NGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS 237 (291)
Q Consensus 159 ~~~~~~~eL~~l~cG~~~~i~~~~l~~~~~~-~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~ 237 (291)
+|++.||+-+|.|.+..||++|||+||+| .||+++|++|.+||+|+++|+.|+|++||+||||++|.|+.||+.+.|
T Consensus 872 --MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P 949 (1001)
T KOG0942|consen 872 --MFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDP 949 (1001)
T ss_pred --hhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCc
Confidence 88999999999999889999999999999 589999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 238 RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 238 ~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
+|+|...+.++++||||+||.|.|+||+|++++.||+||+|||+. +.||+++
T Consensus 950 ~FcI~n~gsd~~RLPTASTCmNLLKLP~y~~kt~LreKLlYAI~s--gAGFeLS 1001 (1001)
T KOG0942|consen 950 AFCIRNAGSDDDRLPTASTCMNLLKLPPYSNKTLLREKLLYAINS--GAGFELS 1001 (1001)
T ss_pred cceeeeCCCccccCCcHHHHHHHhcCCCcccHHHHHHHHHHHHhc--ccCCCCC
Confidence 999999998999999999999999999999999999999999987 8999985
No 7
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-68 Score=507.74 Aligned_cols=275 Identities=29% Similarity=0.508 Sum_probs=259.1
Q ss_pred eeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhcccccccc
Q 022820 3 FLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFIDS 82 (291)
Q Consensus 3 ~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~~ 82 (291)
+|.||.... ...+|.++|+++|+||+|...+++|||.++||+|++.+++++||.++.|.++++|+.|++..++++ .
T Consensus 575 ~WF~~~~~~---~~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~-e 650 (850)
T KOG0941|consen 575 LWFNPSPFE---EEKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDV-E 650 (850)
T ss_pred eeecCCCCC---ccceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccch-h
Confidence 566666552 233899999999999999999999999999999999999999999999999999999999998776 4
Q ss_pred ccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhcccC
Q 022820 83 DGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLSL 162 (291)
Q Consensus 83 ~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~~ 162 (291)
+.++++|++..+..|...+++|+|||.+++||.+||++||+++++|.++.+|++|++||++||+.|+..+.++ .|
T Consensus 651 d~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~-----lf 725 (850)
T KOG0941|consen 651 DVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLR-----LF 725 (850)
T ss_pred hheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhh-----hc
Confidence 7899999999988888899999999999999999999999999999999999999999999999999998777 78
Q ss_pred CHHHHHHHhcCCCCCCchHHhhcccccC-CCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCcceEE
Q 022820 163 ELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRLHI 241 (291)
Q Consensus 163 ~~~eL~~l~cG~~~~i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~~~~i 241 (291)
.|+||+.++||+ .++|++.+++.|+|. ||+.+|++|+|||++++.|+.++|++||+|+|||+|+|++|.+.+ ++.|
T Consensus 726 ~peEl~~li~G~-~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l--~~~i 802 (850)
T KOG0941|consen 726 QPEELEKLICGS-EDYDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKL--KLVI 802 (850)
T ss_pred CHHHHHHHHhCC-CccCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhc--eEEE
Confidence 899999999999 689999999999998 599999999999999999999999999999999999999999998 7888
Q ss_pred eecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 242 YKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 242 ~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
.+.+.+.++||+||||||.|.||.|+|+|.|++||+.||++ ++|||++
T Consensus 803 ~~~~~~~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~--~~GF~l~ 850 (850)
T KOG0941|consen 803 QKNGPDEDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINN--TEGFGLL 850 (850)
T ss_pred ecCCCCcccCcchhhhhhhhhccccCcHHHHHHHHHHHHHh--ccCcCCC
Confidence 88887789999999999999999999999999999999998 8999985
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-64 Score=458.47 Aligned_cols=279 Identities=25% Similarity=0.387 Sum_probs=253.7
Q ss_pred ceeeCCCCCC--C---cchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhcc
Q 022820 2 HFLVCSASKV--H---PLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMD 76 (291)
Q Consensus 2 ~~~pnp~~~~--~---~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~ 76 (291)
++||.|.... + ...+++|+++|+++|+||.+++.++++|+++|||.++|+++|..|+..+||++.++|..|....
T Consensus 311 gLFp~P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv 390 (621)
T KOG0170|consen 311 GLFPRPWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVV 390 (621)
T ss_pred ccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHh
Confidence 6889998663 2 3368899999999999999999999999999999999999999999999999999998775532
Q ss_pred c----------------cccc-----cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHH
Q 022820 77 A----------------EFID-----SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSIS 135 (291)
Q Consensus 77 ~----------------~~~~-----~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~ 135 (291)
. +++. .++++++|+.+ +...+||+|+|.+++||..|.+||++.++++.+.++|.
T Consensus 391 ~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLP-----G~p~ieL~p~g~~~~V~~~NleEYi~~VId~tv~kGVq 465 (621)
T KOG0170|consen 391 PRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLP-----GFPDIELIPGGANKPVTISNLEEYIHGVIDATVGKGVQ 465 (621)
T ss_pred hhhhhhhhhcccccccccceeecCcchhhceeeEecC-----CCCCeeeccCCCCCccccccHHHHHHHHHHHHHhhhHH
Confidence 1 1111 25688899864 66889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCcchhhHHhcccCCHHHHHHHhcCCCCCCchHHhhccccc-CCCCCCcHHHHHHHHHHhcCCHHHH
Q 022820 136 EQTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEY-NGYKENDAQIIWFWKIVGEMPAEQR 214 (291)
Q Consensus 136 ~~~~afr~Gf~~vip~~~L~~~~~~~~~~~eL~~l~cG~~~~i~~~~l~~~~~~-~g~~~~~~~v~~fw~vl~~~s~e~r 214 (291)
+|++|||.||.+|+|.+.|+ .|+|+||..++||.+..|+++.|..|+.+ |||+.+++.|+.+.+++..|+.+||
T Consensus 466 kQleAFr~GF~~VF~~~~Lq-----if~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f~~~qQ 540 (621)
T KOG0170|consen 466 KQLEAFRSGFSSVFPYEHLQ-----IFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAFDKEQQ 540 (621)
T ss_pred HHHHHHHhhhhhccchhhee-----ecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhhchHHH
Confidence 99999999999999999888 88999999999998778999999999998 6999999999999999999999999
Q ss_pred HhhccccccCcCCCCCCCcCCCcceEEeecC-----CCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccc
Q 022820 215 KILLFFWTSVKHLPVEGFAGLASRLHIYKTV-----EPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFG 289 (291)
Q Consensus 215 ~~fL~F~TG~~~lP~~G~~~l~~~~~i~~~~-----~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg 289 (291)
|.||||+|||+|||+|||+.|+||++|+++- .+|+.||+.+||.|+|+||+|+|+|+|++||.+||++ |...|+
T Consensus 541 R~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~E-GqgSFh 619 (621)
T KOG0170|consen 541 RLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSKLLYAIEE-GQGSFH 619 (621)
T ss_pred HHHHHHhcCCCCCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHHHHHHHHc-cccccc
Confidence 9999999999999999999999999999863 3678999999999999999999999999999999998 455588
Q ss_pred cC
Q 022820 290 TW 291 (291)
Q Consensus 290 ~~ 291 (291)
+.
T Consensus 620 LS 621 (621)
T KOG0170|consen 620 LS 621 (621)
T ss_pred cC
Confidence 64
No 9
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-62 Score=460.24 Aligned_cols=280 Identities=31% Similarity=0.557 Sum_probs=263.5
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCC--ChhhHHhhCHHHHHHHHHHHhccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYI--SLEDIRDADPSLYSSCKQILEMDAEF 79 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~--t~~Dl~~~D~~l~~~l~~l~~~~~~~ 79 (291)
.++|.|.++.-++|+.+|+|+||++|+|++.|+.++++|++.|..+++|..- .+++|..+||++|++|..+..++++-
T Consensus 789 ~LyPSPts~~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~ 868 (1096)
T KOG4427|consen 789 RLYPSPTSYHHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDL 868 (1096)
T ss_pred eecCCchhhhhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccH
Confidence 3799999999999999999999999999999999999999999999999876 88999999999999999999998764
Q ss_pred cccccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhc
Q 022820 80 IDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFF 159 (291)
Q Consensus 80 ~~~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~ 159 (291)
.++++||+++.+-.|...++||+|||+.++||++||-+||..++++++++++..|..||-+||.+++.+++|+
T Consensus 869 ---~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~Wls---- 941 (1096)
T KOG4427|consen 869 ---KDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLS---- 941 (1096)
T ss_pred ---hhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----
Confidence 4599999999988999999999999999999999999999999999999999999999999999999998777
Q ss_pred ccCCHHHHHHHhcCCCCCCchHHhhcccccC-CCCCCcHHHHHHHHHHhc-CCHHHHHhhccccccCcCCCCCCCcCCCc
Q 022820 160 LSLELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKENDAQIIWFWKIVGE-MPAEQRKILLFFWTSVKHLPVEGFAGLAS 237 (291)
Q Consensus 160 ~~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~-~s~e~r~~fL~F~TG~~~lP~~G~~~l~~ 237 (291)
+|+|.||++++.|...+||++||++||.|- ||..+|++|+|||+|++. |++|||..||+|||.|+|.|+-||+-+.|
T Consensus 942 -lFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlLGFayLeP 1020 (1096)
T KOG4427|consen 942 -LFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEP 1020 (1096)
T ss_pred -ccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcCCCccccccccCC
Confidence 889999999999988899999999999995 899999999999999997 99999999999999999999999999999
Q ss_pred ceEEee------------------------cCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 238 RLHIYK------------------------TVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 238 ~~~i~~------------------------~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
+|.|.. ++.+.++||+|+||||.|+||.|.-+..|||||+|||.. +.||.+.
T Consensus 1021 pFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLPnY~kkStlreKLrYAIss--ntGFELS 1096 (1096)
T KOG4427|consen 1021 PFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLPNYKKKSTLREKLRYAISS--NTGFELS 1096 (1096)
T ss_pred CceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCCCcchhHHHHHHHHHHhhc--CCCcccC
Confidence 988752 123567999999999999999999999999999999987 7899874
No 10
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=327.75 Aligned_cols=265 Identities=39% Similarity=0.612 Sum_probs=249.2
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
+++.||.+..+|+|+++|+|+|+.+|+|+.++..++-- -..|||.|++++.+++|.+.+|++.|++++++++++...
T Consensus 89 tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en~~~~-- 165 (358)
T KOG0940|consen 89 TLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIRENDPTN-- 165 (358)
T ss_pred ccccCCccCCCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccCCccc--
Confidence 57889999999999999999999999999999998888 999999999999999999999999999999999887543
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
+++|+.+....|.....+++++|.++.||.+|+++||.++.+ ++...+..|.+++.+||..++|...++ .
T Consensus 166 ----~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~-----~ 235 (358)
T KOG0940|consen 166 ----DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLR-----I 235 (358)
T ss_pred ----chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCccccc-----c
Confidence 789999988899999999999999999999999999999999 888899999999999999999998776 7
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS---- 237 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~---- 237 (291)
+.+.+++.++||. .++|+++|++++.|.+|..++++|+|||+.+.++++++|.+.++|+||++++|.+|++.+..
T Consensus 236 ~~e~~~e~~~~~~-~~~~~~d~~~~t~~~~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~ 314 (358)
T KOG0940|consen 236 FDEMELELALSGD-PEIDVNDWKQNTEYRGYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGP 314 (358)
T ss_pred cchhhHHHHhcCC-cccchhHHhhhcccccccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCcc
Confidence 8899999999998 79999999999999999999999999999999999999999999999999999999998764
Q ss_pred -ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHH
Q 022820 238 -RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQ 281 (291)
Q Consensus 238 -~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~ 281 (291)
+++|.. ....+.+|.+|||||+|++|.|.|++.|++|+..||+
T Consensus 315 ~~~~ie~-~~~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 315 RKFCIEK-WGKSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred CceeecC-cccccccchhcccccccccccccchhHHHHHHHHhcC
Confidence 678877 6678899999999999999999999999999998873
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-43 Score=338.51 Aligned_cols=276 Identities=24% Similarity=0.416 Sum_probs=228.4
Q ss_pred eeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhcccc-ccc
Q 022820 3 FLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAE-FID 81 (291)
Q Consensus 3 ~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~-~~~ 81 (291)
|.|-|.-. .+..|..|+-+||++|+|+..|...|+.|++.++|.|+|.++.|.|+..+||.+|++|++|...... +.|
T Consensus 2730 YtPkiGkg-a~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd~D 2808 (3015)
T KOG0943|consen 2730 YTPKIGKG-AEARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSDAD 2808 (3015)
T ss_pred cCCCCCCC-cHHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCccccc
Confidence 44545433 7888999999999999999999999999999999999999999999999999999999999876542 221
Q ss_pred --cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhc
Q 022820 82 --SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFF 159 (291)
Q Consensus 82 --~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~ 159 (291)
...+++.|....-.-.+...|+|+|||.++.||.+|+-+||.++++++|.......++|+|+|+.+|||...|-
T Consensus 2809 adFS~md~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~---- 2884 (3015)
T KOG0943|consen 2809 ADFSAMDLAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLE---- 2884 (3015)
T ss_pred chhhHHHHhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhc----
Confidence 11233333322111123467999999999999999999999999999999766778999999999999998554
Q ss_pred ccCCHHHHHHHhcCCCCCCchHHhhcccccCCCC-CCc----HHHHHHHHHHhcCCHHHHHhhccccccCcCCCCC--CC
Q 022820 160 LSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYK-END----AQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVE--GF 232 (291)
Q Consensus 160 ~~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~-~~~----~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~--G~ 232 (291)
.+|++++..++||- .+++++-|..+|.|..-+ .+. +.-+|||+|++.||..+|+.++.|||||+.||.. ||
T Consensus 2885 -~LT~EDfRLiicG~-eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~ 2962 (3015)
T KOG0943|consen 2885 -DLTAEDFRLIICGC-EEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGF 2962 (3015)
T ss_pred -ccCHhHheeeeecc-cceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCC
Confidence 89999999999997 689999999999884322 221 3469999999999999999999999999999985 45
Q ss_pred cCCCcceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 233 AGLASRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 233 ~~l~~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
.... .|...+.++..||+|+||.++|+.|.|+|+.+||+||+.||. ...|||.
T Consensus 2963 p~~a---SimiRP~dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIK---aKNFGFV 3015 (3015)
T KOG0943|consen 2963 PPMA---SIMIRPPDDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIK---AKNFGFV 3015 (3015)
T ss_pred CCCC---ceeecCcccccCCcccchhhheeeechhhHHHHHHHHHHhhh---ccccccC
Confidence 5442 233345567899999999999999999999999999999997 5778874
No 12
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=35.42 E-value=1.3e+02 Score=20.74 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHh-hCHH
Q 022820 16 LDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRD-ADPS 64 (291)
Q Consensus 16 l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~-~D~~ 64 (291)
....+.+|+++..|...|.++. .++..-|+.+ +..++ +|+.+ +||+
T Consensus 19 R~AH~iVg~~V~~a~~~~~~l~-~l~~~~~~~~-~~~~~-~~~~~~l~~~ 65 (70)
T PF14698_consen 19 REAHHIVGRLVRLAEEEGKPLS-ELTLEELQEI-SPEFE-EDVREALDPE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTS-GG-GS-HHHHHHH--TT---GGGGGGSSHH
T ss_pred HHHHHHHHHHHHHHHHcCCChh-hCCHHHHHHH-hHHhH-HHHHHHCCHH
Confidence 4567899999999999998843 5777666664 23333 45544 4544
No 13
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=33.85 E-value=24 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.3
Q ss_pred hcCCHHHHHhhccccccCcCC
Q 022820 207 GEMPAEQRKILLFFWTSVKHL 227 (291)
Q Consensus 207 ~~~s~e~r~~fL~F~TG~~~l 227 (291)
.+|+++|-|.|=+|+|||+-=
T Consensus 50 D~lTpDQVrAlHRlvTsSpe~ 70 (92)
T PHA02681 50 DKMTDDQVRAFHALVTSSPED 70 (92)
T ss_pred ccCCHHHHHHHHHHHhCCCCC
Confidence 478999999999999999753
No 14
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=28.92 E-value=60 Score=22.07 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCc----cccCCCcHHHHHHHhCCCCChhh
Q 022820 22 SGRVIALALMHRV----QVGVVFDRVFYLQLAGKYISLED 57 (291)
Q Consensus 22 lG~lig~ai~~~~----~l~l~l~~~~~k~l~g~~~t~~D 57 (291)
+-++|..|+.-|. .-++.|||-+|..+-+...+++.
T Consensus 26 lhklitialflgclffilrdfcfppmlw~~l~n~t~~~n~ 65 (78)
T PF05293_consen 26 LHKLITIALFLGCLFFILRDFCFPPMLWTQLNNITSPFNN 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHcccchHHH
Confidence 4667777777664 45899999999999776655543
No 15
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.32 E-value=1.2e+02 Score=28.26 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhhHHH---HHHHHHhhhhhccCcchhhHHhcccCCHHHHHHHhcCCCCCCchHHhhcccccCCCCCC
Q 022820 119 EDYVSLLIRHRFVTSISE---QTSRFAKGFADILCNPRLQKQFFLSLELEDLDRMLFGSEQAICVEDWKAHTEYNGYKEN 195 (291)
Q Consensus 119 ~~yv~~~~~~~l~~~~~~---~~~afr~Gf~~vip~~~L~~~~~~~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~ 195 (291)
..+|..++...+...+++ ...+++++|..+-+ + +++.+|-+.--.-. ..=.+++||+.+.-.++
T Consensus 280 A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~r----R-----lLtEeEYeeQaeve-T~kaLaeLReycnkpd~--- 346 (452)
T KOG3817|consen 280 AAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKR----R-----LLTEEEYEEQAEVE-TSKALAELREYCNKPDC--- 346 (452)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch----h-----hcCHHHHHHHHHHH-HHHHHHHHHHHhCCCCC---
Confidence 344555555444433332 24566777554422 2 67888887654432 23457788887764333
Q ss_pred cHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCC
Q 022820 196 DAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEG 231 (291)
Q Consensus 196 ~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G 231 (291)
+ =|.++..+-.-.| |-.|+-|++++-.+-
T Consensus 347 -~----~Wkvvgrlrsp~r--fA~F~eG~~Hlt~~E 375 (452)
T KOG3817|consen 347 -K----QWKVVGRLRSPLR--FASFAEGAPHLTDEE 375 (452)
T ss_pred -c----hhhhhhhccCHHH--HHHHhcCCCCCCHHH
Confidence 2 3889988755444 999999999988653
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=25.64 E-value=32 Score=29.85 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=40.7
Q ss_pred CHHHHHHHhcCCCCCCchHHhhccccc-CCCCCCcHHHHHHH-----HHHhcCCHHHHHhhcccccc
Q 022820 163 ELEDLDRMLFGSEQAICVEDWKAHTEY-NGYKENDAQIIWFW-----KIVGEMPAEQRKILLFFWTS 223 (291)
Q Consensus 163 ~~~eL~~l~cG~~~~i~~~~l~~~~~~-~g~~~~~~~v~~fw-----~vl~~~s~e~r~~fL~F~TG 223 (291)
++..--.++.+... .++-| +|.| |.....+++|+|.- -++..++.++|++||.=-++
T Consensus 166 s~a~Yy~lLa~~~~--rvDiW--~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~ 228 (257)
T COG4106 166 SPAAYYELLAPLAC--RVDIW--HTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLA 228 (257)
T ss_pred CHHHHHHHhCcccc--eeeee--eeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHH
Confidence 45555567766533 34444 4666 67778888999854 58899999999999986665
No 17
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=24.16 E-value=85 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHHHHhcCCHHHHHhhcccc-----ccCcCCC
Q 022820 201 WFWKIVGEMPAEQRKILLFFW-----TSVKHLP 228 (291)
Q Consensus 201 ~fw~vl~~~s~e~r~~fL~F~-----TG~~~lP 228 (291)
.+..++++++.++.++|-... .|..++|
T Consensus 4 ~Ll~~Le~L~~~efk~FK~~L~~~~~~~~~~Ip 36 (83)
T PF02758_consen 4 LLLWYLEELSEEEFKRFKWLLKEPVKEGFPPIP 36 (83)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHSTSSTTTCSSS
T ss_pred HHHHHHHhCCHHHHHHHHHHhcchhhcCCCCCC
Confidence 467899999999999998888 4444444
No 18
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=23.68 E-value=55 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=16.8
Q ss_pred CcCCCCCCCcCCCcceEEeecCCCCCCCCccccCCCeeecCC
Q 022820 224 VKHLPVEGFAGLASRLHIYKTVEPADRLPTSHTCFYRLCFPS 265 (291)
Q Consensus 224 ~~~lP~~G~~~l~~~~~i~~~~~~~~~LP~A~TCf~~L~LP~ 265 (291)
+++||-+++..+.|.+.+...+. ..+| ++.||.
T Consensus 9 C~~Lp~d~~~~~~P~~~~~~~~~-------~~~c--~v~LP~ 41 (90)
T PF03368_consen 9 CSTLPSDSFTNLKPEFEIEKIGS-------GFIC--TVILPI 41 (90)
T ss_dssp HTTSSS-TT--SS-EEEEEE--G--------EEE--EEE--T
T ss_pred HhcCCCCCCccCCceEEEEEcCC-------cEEE--EEECCC
Confidence 46889888988888888776542 3455 555554
No 19
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.49 E-value=98 Score=24.44 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHhccccccccccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 022820 62 DPSLYSSCKQILEMDAEFIDSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRF 141 (291)
Q Consensus 62 D~~l~~~l~~l~~~~~~~~~~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~af 141 (291)
..++-++++++++...... +++..- .+..||.+.+..|..+-.+.=+...-...+.+|
T Consensus 3 nNDvLRsvRY~Ln~~dn~l---------------------v~i~~~-~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~f 60 (155)
T COG4807 3 NNDILRSVRYILNANDNDL---------------------VRILAL-GNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSF 60 (155)
T ss_pred chHHHHHHHHHHcCCchHH---------------------HHHHHh-cCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHH
Confidence 3467788899988765543 111111 245788899999998887777776666778888
Q ss_pred Hhhh
Q 022820 142 AKGF 145 (291)
Q Consensus 142 r~Gf 145 (291)
..|+
T Consensus 61 L~GL 64 (155)
T COG4807 61 LNGL 64 (155)
T ss_pred hcch
Confidence 8876
Done!