Query 022820
Match_columns 291
No_of_seqs 174 out of 1144
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 2.4E-82 8.1E-87 588.6 26.0 280 2-291 121-405 (405)
2 1zvd_A SMAD ubiquitination reg 100.0 3.9E-81 1.3E-85 578.5 27.1 277 2-290 98-379 (380)
3 3olm_A E3 ubiquitin-protein li 100.0 4.1E-79 1.4E-83 572.2 26.4 276 2-290 148-428 (429)
4 1nd7_A WW domain-containing pr 100.0 1.2E-78 4E-83 561.2 27.7 271 2-282 97-372 (374)
5 1c4z_A E6AP, ubiquitin-protein 100.0 6.2E-79 2.1E-83 559.7 23.4 276 2-291 81-358 (358)
6 2oni_A E3 ubiquitin-protein li 100.0 6.3E-77 2.2E-81 552.0 24.8 269 2-282 117-392 (392)
7 3pt3_A E3 ubiquitin-protein li 100.0 6.2E-42 2.1E-46 264.0 7.7 110 176-291 2-118 (118)
8 1l6x_B Minimized B-domain of p 51.8 14 0.00048 20.9 2.7 23 197-219 4-28 (34)
9 3b09_A Peptidyl-prolyl CIS-tra 45.6 33 0.0011 24.0 4.7 48 104-151 14-67 (88)
10 1zda_A Mini protein A domain, 31.1 20 0.00069 20.8 1.2 22 198-219 10-33 (38)
11 2lr2_A Immunoglobulin G-bindin 28.8 43 0.0015 22.8 2.7 30 196-225 20-51 (88)
12 3ivp_A Putative transposon-rel 27.8 1.1E+02 0.0038 22.0 5.4 62 161-223 36-108 (126)
13 2kzi_A Engineered protein, ZHE 26.0 26 0.0009 23.2 1.3 21 199-219 22-44 (70)
14 3lfp_A CSP231I C protein; tran 25.0 1.2E+02 0.0042 20.6 5.0 61 161-223 25-94 (98)
15 2diu_A KIAA0430 protein; struc 23.6 73 0.0025 22.7 3.4 34 250-283 4-37 (96)
16 1sn9_A BBAT, tetrameric beta-B 20.4 60 0.0021 16.5 1.7 19 262-280 3-21 (26)
17 3qwo_C Motavizumab epitope sca 20.1 64 0.0022 20.4 2.1 23 197-219 5-29 (57)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=2.4e-82 Score=588.57 Aligned_cols=280 Identities=31% Similarity=0.597 Sum_probs=253.7
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
+|+|||.+..+++|+++|+|+|++||+||+++.+++++||++|||+|+|.+++++||+++||++|++|++|++++.++.
T Consensus 121 ~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l- 199 (405)
T 3h1d_A 121 TYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTL- 199 (405)
T ss_dssp EEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGS-
T ss_pred eEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhh-
Confidence 5789999888899999999999999999999999999999999999999999999999999999999999999875543
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
.+++||+++.+..|...++||+|||++++||.+||++||+++++|+++++++.|++||++||++|+|.+.|+ +
T Consensus 200 --~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~-----l 272 (405)
T 3h1d_A 200 --GYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLIS-----I 272 (405)
T ss_dssp --SSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHT-----T
T ss_pred --cceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh-----C
Confidence 377899987777787788999999999999999999999999999999999999999999999999998776 8
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCC-----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA----- 236 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~----- 236 (291)
|+|+||+.++||. ++||+++|+++|.|+||+.++++|+|||+|+++||++||++||+|+|||+|+|++||+.+.
T Consensus 273 F~~~ELe~Li~G~-~~id~~dl~~~t~y~gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~ 351 (405)
T 3h1d_A 273 FTEQELELLISGL-PTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGI 351 (405)
T ss_dssp SCHHHHHHHHHCC-CCCCHHHHHHTEEEESSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSB
T ss_pred CCHHHHHHHhCCC-CCCCHHHHHhhCcccCCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCC
Confidence 8999999999998 6899999999999999999999999999999999999999999999999999999999986
Q ss_pred cceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 237 SRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 237 ~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
++|+|.+.+.++++||+||||||+|+||.|+|+|+||+||++||++ +++|||||
T Consensus 352 ~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e-~~~GFgla 405 (405)
T 3h1d_A 352 QKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE-ASEGFGLA 405 (405)
T ss_dssp CCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC---------
T ss_pred ceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHh-CCCCcCCC
Confidence 4899988777789999999999999999999999999999999986 68999997
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-81 Score=578.50 Aligned_cols=277 Identities=33% Similarity=0.567 Sum_probs=257.6
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
+++|||.+..+++|+++|+|+|++||+||+++.+++++||++|||+|+|.+++++||+++||++|++|++|++++.++
T Consensus 98 ~~~~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~~-- 175 (380)
T 1zvd_A 98 TLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITG-- 175 (380)
T ss_dssp EEEECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHSCCTT--
T ss_pred eeccCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhCCccc--
Confidence 467999988889999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
.++++|+++.+..|...++||+|||++++||.+||++||+++++++++++++.|++||++||++|+|...|+ +
T Consensus 176 --~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~-----~ 248 (380)
T 1zvd_A 176 --VLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLK-----T 248 (380)
T ss_dssp --TSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGT-----T
T ss_pred --cccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHh-----C
Confidence 488999999888888899999999999999999999999999999999999999999999999999999777 8
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS---- 237 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~---- 237 (291)
|+|+||+.++||. ++||+++|+++|.|+||++++++|+|||+||++||+|||++||+|||||+|+|++||+++++
T Consensus 249 F~~~ELe~li~G~-~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp 327 (380)
T 1zvd_A 249 FDEKELELIICGL-GKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGP 327 (380)
T ss_dssp CCHHHHHHHHHCB-SSCCHHHHHHTEEEESSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEE
T ss_pred CCHHHHHHhhCCC-CCCChhhhhhccEecCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCC
Confidence 8999999999998 78999999999999999999999999999999999999999999999999999999999863
Q ss_pred -ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCccccc
Q 022820 238 -RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGT 290 (291)
Q Consensus 238 -~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~ 290 (291)
+|+|+..+.++++||+||||||+|+||.|+|+|+||+||++||++ ++|||+
T Consensus 328 ~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~--~~GF~l 379 (380)
T 1zvd_A 328 RLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEE--TCGFAV 379 (380)
T ss_dssp CCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC--------
T ss_pred CceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHh--CCCcCc
Confidence 689997777889999999999999999999999999999999987 789997
No 3
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-79 Score=572.20 Aligned_cols=276 Identities=36% Similarity=0.641 Sum_probs=258.0
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
+++|||.+..+++|+++|+|+|++||+||+++.+++++|+++|||+|+|.+++++||+++||+++++|++|++++.+
T Consensus 148 ~~~~np~s~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~~d~~--- 224 (429)
T 3olm_A 148 TIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSID--- 224 (429)
T ss_dssp CEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTTSCCT---
T ss_pred eEeeCCcccCCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHhCCHH---
Confidence 47899998888999999999999999999999999999999999999999999999999999999999999876433
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
+.++++|+++.+..|...++||+|||++++||.+||++||+++++|+++++++.|++||++||++|+|...|+ +
T Consensus 225 -~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~-----~ 298 (429)
T 3olm_A 225 -GVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVT-----V 298 (429)
T ss_dssp -TTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHT-----T
T ss_pred -HhhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHh-----c
Confidence 3489999998888888899999999999999999999999999999999999999999999999999998776 8
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCc----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLAS---- 237 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~---- 237 (291)
|+|+||+.++||. ++||+++|+++|.|+||++++++|+|||+|+++||+|||++||+|||||+|+|++||+++++
T Consensus 299 F~~~ELe~Li~G~-~~id~~dl~~~t~y~Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~ 377 (429)
T 3olm_A 299 FDERELELLIGGI-AEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGP 377 (429)
T ss_dssp SCHHHHHHHHTCB-CCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEE
T ss_pred CCHHHHHHHhcCC-CCCCHHHHHHhccccCCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcCCC
Confidence 8999999999998 68999999999999999999999999999999999999999999999999999999999974
Q ss_pred -ceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCccccc
Q 022820 238 -RLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGT 290 (291)
Q Consensus 238 -~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~ 290 (291)
+|+|++.+ ++++||+||||||+|+||.|+|+|+||+||++||++ ++|||+
T Consensus 378 ~~f~I~~~~-~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~--~~GFg~ 428 (429)
T 3olm_A 378 RRFTIEKAG-EVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE--TIGFGQ 428 (429)
T ss_dssp CCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHH--TC----
T ss_pred ceEEEeeCC-CCCCCCccccccCEeECCCCCCHHHHHHHHHHHHHc--CCCCCC
Confidence 78998765 578999999999999999999999999999999998 899996
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=1.2e-78 Score=561.24 Aligned_cols=271 Identities=35% Similarity=0.621 Sum_probs=256.6
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
+++|||.+..+++|+++|+|+|++||+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|++++.++.
T Consensus 97 ~~~~~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~~~~- 175 (374)
T 1nd7_A 97 CLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEEC- 175 (374)
T ss_dssp CEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSS-
T ss_pred eeccCCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHHhhHHHHHhhhhhccCChhhh-
Confidence 4689999888899999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred cccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhccc
Q 022820 82 SDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFLS 161 (291)
Q Consensus 82 ~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~~ 161 (291)
.++++|+++.+..|...++||+|||++++||.+||++||+++++++++++++.|++||++||++|+|.+.|+ +
T Consensus 176 --~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~-----~ 248 (374)
T 1nd7_A 176 --GLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQ-----Y 248 (374)
T ss_dssp --CCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGT-----T
T ss_pred --hcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHh-----c
Confidence 488999998877888899999999999999999999999999999999999999999999999999999777 8
Q ss_pred CCHHHHHHHhcCCCCCCchHHhhcccccCCCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCC-----
Q 022820 162 LELEDLDRMLFGSEQAICVEDWKAHTEYNGYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA----- 236 (291)
Q Consensus 162 ~~~~eL~~l~cG~~~~i~~~~l~~~~~~~g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~----- 236 (291)
|+|+||+.++||. ++||+++|+++|.|+||++++++|+|||+||++||+|||++||+|||||+|+|++||+++.
T Consensus 249 F~~~ELe~li~G~-~~id~~dl~~~t~y~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp 327 (374)
T 1nd7_A 249 FDEKELEVMLCGM-QEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGP 327 (374)
T ss_dssp CCHHHHHHHHHCC-CCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEE
T ss_pred CCHHHHHHHhcCC-CCCCHHHHhhheEEcCCCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhhccccCCC
Confidence 8999999999998 6899999999999999999999999999999999999999999999999999999999985
Q ss_pred cceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHh
Q 022820 237 SRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQE 282 (291)
Q Consensus 237 ~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~ 282 (291)
++++|.+.+ ++++||+||||||+|+||.|+|+|+||+||++||++
T Consensus 328 ~~f~I~~~~-~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~ 372 (374)
T 1nd7_A 328 QKFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE 372 (374)
T ss_dssp CCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHS
T ss_pred CceEEEeCC-CCCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHHh
Confidence 478888755 578999999999999999999999999999999987
No 5
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=6.2e-79 Score=559.66 Aligned_cols=276 Identities=29% Similarity=0.482 Sum_probs=249.8
Q ss_pred ceeeCCCCCCCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhccccccc
Q 022820 2 HFLVCSASKVHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFID 81 (291)
Q Consensus 2 ~~~pnp~~~~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~~ 81 (291)
.++|||.+. ++.++|+|+|++||+||+++.+++++||++|||+|+|.+++++||+++||++|++|++|++++.+..
T Consensus 81 ~~~~np~s~---~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~- 156 (358)
T 1c4z_A 81 LFWFNPSSF---ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVE- 156 (358)
T ss_dssp EEEECTTCC---SCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHH-
T ss_pred eEeeCCccc---cchHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchh-
Confidence 378999875 2357899999999999999999999999999999999999999999999999999999999875322
Q ss_pred cccccceeeeee-eccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhcc
Q 022820 82 SDGLGLTFVREV-EELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFL 160 (291)
Q Consensus 82 ~~~l~l~f~~~~-~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~ 160 (291)
+.++++|+++. +..|...++||+|||++++||.+||++||+++++++++++++.|++||++||++|+|...|+.
T Consensus 157 -~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~---- 231 (358)
T 1c4z_A 157 -DDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKY---- 231 (358)
T ss_dssp -HHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCS----
T ss_pred -hhccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhc----
Confidence 45889999875 456777899999999999999999999999999999999999999999999999999887642
Q ss_pred cCCHHHHHHHhcCCCCCCchHHhhcccccC-CCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCCcce
Q 022820 161 SLELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLASRL 239 (291)
Q Consensus 161 ~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~~~~ 239 (291)
+|+|+||+.++||. ++||+++|+++|+|+ ||++++++|+|||+||++||+|||++||+|+|||+|+|++||+++ ++
T Consensus 232 lF~~~ELe~li~G~-~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~ 308 (358)
T 1c4z_A 232 LFRPEEIELLICGS-RNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KM 308 (358)
T ss_dssp CSSTHHHHHHHHCB-CCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CC
T ss_pred CCCHHHHHHHhhcc-cCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccc--ee
Confidence 68999999999998 689999999999996 899999999999999999999999999999999999999999998 67
Q ss_pred EEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 240 HIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 240 ~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
+|++.+.++++||+||||||+|+||.|+|+|+||+||++||++ ++|||+.
T Consensus 309 ~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~--~~GFgl~ 358 (358)
T 1c4z_A 309 IIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITY--AKGFGML 358 (358)
T ss_dssp EEEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHH--C------
T ss_pred eeecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHh--CCCCCcC
Confidence 8887766678999999999999999999999999999999998 7899973
No 6
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=6.3e-77 Score=551.98 Aligned_cols=269 Identities=34% Similarity=0.616 Sum_probs=251.7
Q ss_pred ceeeCCCCC-CCcchHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHHhCCCCChhhHHhhCHHHHHHHHHHHhcccccc
Q 022820 2 HFLVCSASK-VHPLHLDYFCFSGRVIALALMHRVQVGVVFDRVFYLQLAGKYISLEDIRDADPSLYSSCKQILEMDAEFI 80 (291)
Q Consensus 2 ~~~pnp~~~-~~~~~l~~~~~lG~lig~ai~~~~~l~l~l~~~~~k~l~g~~~t~~Dl~~~D~~l~~~l~~l~~~~~~~~ 80 (291)
+++|||.+. .+++++++|+|+|++||+||++|.+++++|+++|||+|+|.+++++||+++||++|++|++|++++.
T Consensus 117 ~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~d~--- 193 (392)
T 2oni_A 117 TLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDP--- 193 (392)
T ss_dssp CEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHSCC---
T ss_pred eeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcCCh---
Confidence 467999875 3688999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccccccceeeeeeeccCcccceecCCCCcccccCcCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhccCcchhhHHhcc
Q 022820 81 DSDGLGLTFVREVEELGSRKTVELCPGGRSMAVNSKNREDYVSLLIRHRFVTSISEQTSRFAKGFADILCNPRLQKQFFL 160 (291)
Q Consensus 81 ~~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~L~~~~~~ 160 (291)
++++++|+++.+..|...++||+|||++++||.+||++||+++++++++++++.|++||++||++|+|...|+
T Consensus 194 --~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~----- 266 (392)
T 2oni_A 194 --TELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIK----- 266 (392)
T ss_dssp --GGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHT-----
T ss_pred --hHceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhh-----
Confidence 3478999998888888889999999999999999999999999999999999999999999999999998777
Q ss_pred cCCHHHHHHHhcCCCCCCchHHhhcccccC-CCCCCcHHHHHHHHHHhcCCHHHHHhhccccccCcCCCCCCCcCCC---
Q 022820 161 SLELEDLDRMLFGSEQAICVEDWKAHTEYN-GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPVEGFAGLA--- 236 (291)
Q Consensus 161 ~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~-g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~~G~~~l~--- 236 (291)
+|+|+||+.++||. ++||+++|+++|+|. ||++++++|+|||+||++||+|||++||+|||||+|+|++||+++.
T Consensus 267 ~F~~~ELe~licG~-~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~ 345 (392)
T 2oni_A 267 IFDENELELLMCGL-GDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSN 345 (392)
T ss_dssp TSCHHHHHHHHHCC-CCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETT
T ss_pred cCCHHHHHHhhcCC-CCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhhcccC
Confidence 88999999999998 689999999999996 7999999999999999999999999999999999999999999984
Q ss_pred --cceEEeecCCCCCCCCccccCCCeeecCCCCCHHHHHHHHHHHHHh
Q 022820 237 --SRLHIYKTVEPADRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQE 282 (291)
Q Consensus 237 --~~~~i~~~~~~~~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~ 282 (291)
++++|.+.+ ++++||+||||||+|+||.|+|+|+||+||++||+|
T Consensus 346 gp~~f~I~~~~-~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI~n 392 (392)
T 2oni_A 346 GPQLFTIEQWG-SPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN 392 (392)
T ss_dssp EECCCEEEECS-CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CCCceEEEeCC-CCCcCcEEEcccCEeECCCCCCHHHHHHHHHHHHhC
Confidence 368888754 568999999999999999999999999999999974
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=100.00 E-value=6.2e-42 Score=263.96 Aligned_cols=110 Identities=34% Similarity=0.592 Sum_probs=76.5
Q ss_pred CCCchHHhhcccccCC-CCCCc----HHHHHHHHHHhcCCHHHHHhhccccccCcCCCC--CCCcCCCcceEEeecCCCC
Q 022820 176 QAICVEDWKAHTEYNG-YKEND----AQIIWFWKIVGEMPAEQRKILLFFWTSVKHLPV--EGFAGLASRLHIYKTVEPA 248 (291)
Q Consensus 176 ~~i~~~~l~~~~~~~g-~~~~~----~~v~~fw~vl~~~s~e~r~~fL~F~TG~~~lP~--~G~~~l~~~~~i~~~~~~~ 248 (291)
+.||+++|++||+|+| |..++ ++|+|||+||++||+|||++||+|+||++|+|+ +||+.+ ++|+|. +.++
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~--~~~~ 78 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIR--PPDD 78 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEE--SCCT
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC-CcEEEE--CCCC
Confidence 5799999999999975 56665 899999999999999999999999999999999 899998 578886 3468
Q ss_pred CCCCccccCCCeeecCCCCCHHHHHHHHHHHHHhCCCcccccC
Q 022820 249 DRLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEHVGCSFGTW 291 (291)
Q Consensus 249 ~~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~~~~gFg~~ 291 (291)
++||+||||||+|+||.|+|+|+||+||++||++ +||||.
T Consensus 79 ~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~---~gfGfv 118 (118)
T 3pt3_A 79 QHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT---KNFGFV 118 (118)
T ss_dssp TSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC----------
T ss_pred CCCccceehhceeECCCCCCHHHHHHHHHHHHHh---CCcCCC
Confidence 8999999999999999999999999999999984 789884
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=51.84 E-value=14 Score=20.91 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.0
Q ss_pred HHHHHHHHHHh--cCCHHHHHhhcc
Q 022820 197 AQIIWFWKIVG--EMPAEQRKILLF 219 (291)
Q Consensus 197 ~~v~~fw~vl~--~~s~e~r~~fL~ 219 (291)
+.-+.|.+||+ .+|+|+|-.+++
T Consensus 4 ~qQnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 4 QCQRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 45678999997 899999988765
No 9
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=45.60 E-value=33 Score=23.96 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=15.7
Q ss_pred cCCCCcccccCcCCHHHHHHHHHHHHhhhhHHH------HHHHHHhhhhhccCc
Q 022820 104 LCPGGRSMAVNSKNREDYVSLLIRHRFVTSISE------QTSRFAKGFADILCN 151 (291)
Q Consensus 104 L~~~G~~~~Vt~~n~~~yv~~~~~~~l~~~~~~------~~~afr~Gf~~vip~ 151 (291)
|+|.|+...++.++-.+=+.-.+-..+...++. .+++|.+||.+.+-.
T Consensus 14 ~~~~~~~~~~~l~t~~~K~SYaIG~~mG~~L~~~g~~~lD~dav~~Gl~Dal~G 67 (88)
T 3b09_A 14 LVPRGSHMSDLFSTMEQHASYGVGRQMGEQLAANSFEGIDIPAVQAGLADAFAG 67 (88)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHTT
T ss_pred CCcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHcC
Confidence 566676655544433332332333333332221 344555555555533
No 10
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=31.11 E-value=20 Score=20.80 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHh--cCCHHHHHhhcc
Q 022820 198 QIIWFWKIVG--EMPAEQRKILLF 219 (291)
Q Consensus 198 ~v~~fw~vl~--~~s~e~r~~fL~ 219 (291)
.-..|.+||+ .+|+|+|-.|++
T Consensus 10 QQnaFYevLh~~nLtEeQrn~yI~ 33 (38)
T 1zda_A 10 QQRRFYEALHDPNLNEEQRNAKIK 33 (38)
T ss_dssp SSHHHHHHHSCSSSCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 3467999997 899999988865
No 11
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=28.79 E-value=43 Score=22.78 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHh--cCCHHHHHhhccccccCc
Q 022820 196 DAQIIWFWKIVG--EMPAEQRKILLFFWTSVK 225 (291)
Q Consensus 196 ~~~v~~fw~vl~--~~s~e~r~~fL~F~TG~~ 225 (291)
......||+|+. .+++|||..|++=.---+
T Consensus 20 k~qqnAfyEIl~lPNLneeQrnafiqSLkDDp 51 (88)
T 2lr2_A 20 KEQQNAFYEILHLPNLNEEQRNAFIQSLKDDS 51 (88)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhccCc
Confidence 356778999998 899999999987554433
No 12
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.75 E-value=1.1e+02 Score=21.96 Aligned_cols=62 Identities=5% Similarity=-0.081 Sum_probs=42.0
Q ss_pred cCCHHHHHHHhcCCCCCCchHHhhcccccC-----------CCCCCcHHHHHHHHHHhcCCHHHHHhhcccccc
Q 022820 161 SLELEDLDRMLFGSEQAICVEDWKAHTEYN-----------GYKENDAQIIWFWKIVGEMPAEQRKILLFFWTS 223 (291)
Q Consensus 161 ~~~~~eL~~l~cG~~~~i~~~~l~~~~~~~-----------g~~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG 223 (291)
.++..-+..+-.|. ...+++.+.+.+.+- +....+.....+.+.+..+++++++.++.++.+
T Consensus 36 gis~~~is~~E~g~-~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~~ 108 (126)
T 3ivp_A 36 EIDPRYLTNIENKG-QHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVIMESVADG 108 (126)
T ss_dssp TCCHHHHHHHHHSC-CCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCC-CCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34666677777776 456666666554431 122345567778899999999999998887654
No 13
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=26.01 E-value=26 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=17.2
Q ss_pred HHHHHHHHh--cCCHHHHHhhcc
Q 022820 199 IIWFWKIVG--EMPAEQRKILLF 219 (291)
Q Consensus 199 v~~fw~vl~--~~s~e~r~~fL~ 219 (291)
-..||+||. .+++++|..|++
T Consensus 22 QnAFYeiL~~pnLtEeQrngfI~ 44 (70)
T 2kzi_A 22 RNAYWEIALLPNLNNQQKRAFIR 44 (70)
T ss_dssp TTSSHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcchhhhhcccc
Confidence 457999997 899999987764
No 14
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=25.04 E-value=1.2e+02 Score=20.63 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=41.0
Q ss_pred cCCHHH----HHHHhcCCCCCCchHHhhcccccCCC-----CCCcHHHHHHHHHHhcCCHHHHHhhcccccc
Q 022820 161 SLELED----LDRMLFGSEQAICVEDWKAHTEYNGY-----KENDAQIIWFWKIVGEMPAEQRKILLFFWTS 223 (291)
Q Consensus 161 ~~~~~e----L~~l~cG~~~~i~~~~l~~~~~~~g~-----~~~~~~v~~fw~vl~~~s~e~r~~fL~F~TG 223 (291)
.+++.- +..+-.|. ...+.+.+.+.+.+-|. -.......-....+..++++++..+ .|+.+
T Consensus 25 gis~~~~~~~is~~E~g~-~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~ 94 (98)
T 3lfp_A 25 GIDEASASARMNQYEKGK-HAPDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNELNEQERKRI-NFYIR 94 (98)
T ss_dssp TCCHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHTSCGGGGGCCCHHHHHHHHHHTTCCHHHHHHH-HHHHT
T ss_pred CCCcchhhhHHHHHHCCC-CCCCHHHHHHHHHHHCcCHHHHhCCChhHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 345666 67777776 46677777766554221 1233445567788899999999998 88765
No 15
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.56 E-value=73 Score=22.68 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCCccccCCCeeecCCCCCHHHHHHHHHHHHHhC
Q 022820 250 RLPTSHTCFYRLCFPSYPSMAIMGDRLRIITQEH 283 (291)
Q Consensus 250 ~LP~A~TCf~~L~LP~Y~s~e~l~~kL~~Ai~~~ 283 (291)
..|-.+||++.--||.=.+.+.+|++|...-.+.
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y 37 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC 37 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc
Confidence 4566889988889999999999999998766653
No 16
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=20.40 E-value=60 Score=16.55 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=16.0
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 022820 262 CFPSYPSMAIMGDRLRIIT 280 (291)
Q Consensus 262 ~LP~Y~s~e~l~~kL~~Ai 280 (291)
++|.|.=.+.+.+-|+.|.
T Consensus 3 ripsydfadelakllrqa~ 21 (26)
T 1sn9_A 3 RIPSYDFADELAKLLRQAX 21 (26)
T ss_dssp CBTTBCHHHHHHHHHHHHT
T ss_pred CCCccchHHHHHHHHHHhh
Confidence 6899999999998888764
No 17
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=20.07 E-value=64 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHHHHHh--cCCHHHHHhhcc
Q 022820 197 AQIIWFWKIVG--EMPAEQRKILLF 219 (291)
Q Consensus 197 ~~v~~fw~vl~--~~s~e~r~~fL~ 219 (291)
..-..|.+||+ .+++++|..|++
T Consensus 5 ~qQ~AFYeil~lpnLtEeqRn~yI~ 29 (57)
T 3qwo_C 5 EKKLASNEIANLPNLNEEQRSAFLS 29 (57)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchhhccchHh
Confidence 35578999997 899999998875
Done!