BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022821
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 150/264 (56%), Positives = 190/264 (71%), Gaps = 10/264 (3%)
Query: 29 YQTSWAFDHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAF 86
Y +WAFDH++Y G+ ++L+LD Y+G GF SK YLFG S+Q+KLV GDSAGTVTAF
Sbjct: 21 YVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAF 80
Query: 87 YMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLW 146
Y+SS H+E DFEFLGN TG+PY++QTNV+ G G+REQR+ LWFDPTKEFH YS+LW
Sbjct: 81 YLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLW 140
Query: 147 NQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAP 206
N +VFLVD+ PIRV N + G+ FP +Q M +YSS+WNADDWAT+GG KTDWS AP
Sbjct: 141 NMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAP 200
Query: 207 FIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRAN 266
FIASY+ F ID CE ASV AK C++ + WWD+ +L+ Q +L WVR
Sbjct: 201 FIASYRSFHIDGCE--ASV----EAKFCATQGAR--WWDQKEFQDLDAFQYRRLSWVRQK 252
Query: 267 HLIYDYCTDTSRFPAIPTECVHHR 290
+ IY+YCTD SR+P++P EC R
Sbjct: 253 YTIYNYCTDRSRYPSMPPECKRDR 276
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 162/303 (53%), Gaps = 40/303 (13%)
Query: 7 IFSLFVGLLMVVLVSSA--------------------KFDDLYQTSWAFDHVQYDGDTLK 46
I S+F+ LL +++ SS+ FD Y W H + D +L
Sbjct: 5 ILSIFLHLLPILMFSSSCLGQGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQGSLT 64
Query: 47 LNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS--DGP-NHNEFDFEFL 103
+ LD+ SG+GF S ++Y G IKL G +AG +T+FY+S+ D P H+E D EFL
Sbjct: 65 IWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFL 124
Query: 104 GNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVH 163
G G+PY +QTNV++ G G+RE R+ LWFDPT+++H Y++ W +++F VD+ PIR +
Sbjct: 125 GTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRY 184
Query: 164 TNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPA 223
P + + VY S+W+A WAT+ G+ K D+ + PF+ Y+ F + +C A
Sbjct: 185 PRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA 241
Query: 224 SVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIP 283
A C+ ++ + +L+ Q + WV+ N+++Y+YC D +R +
Sbjct: 242 -------ASSCNPASVSPY-------GQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLT 287
Query: 284 TEC 286
EC
Sbjct: 288 PEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 20 VSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDS 79
++S FD Y W H + D +L + LD+ SG+GF S ++Y G IKL G +
Sbjct: 15 ITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYT 74
Query: 80 AGTVTAFYMSS--DGP-NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPT 136
AG +T+FY+S+ D P H+E D EFLG G+PY +QTNV++ G G+RE R+ LWFDPT
Sbjct: 75 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPT 134
Query: 137 KEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 196
+++H Y++ W +++F VD+ PIR + P + + VY S+W+A WAT+ G
Sbjct: 135 QDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENG 191
Query: 197 RVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQ 256
+ K D+ + PF+ Y+ F + +C A A C+ ++ + +L+ Q
Sbjct: 192 KYKADYRYQPFVGKYEDFKLGSCTVEA-------ASSCNPASVSPY-------GQLSQQQ 237
Query: 257 SHQLMWVRANHLIYDYCTDTSRFPAIPTEC 286
+ WV+ N+++Y+YC D +R + EC
Sbjct: 238 VAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 152/275 (55%), Gaps = 25/275 (9%)
Query: 20 VSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDS 79
++S FD Y W H + D +L + LD+ SG+GF S ++Y G IKL G +
Sbjct: 14 ITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYT 73
Query: 80 AGTVTAFYMSS--DGP-NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDL 131
AG +T+FY+S+ D P H+E D EFLG G+PY +QTNV++ G G+ RE R+ L
Sbjct: 74 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHL 133
Query: 132 WFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDW 191
WFDPT+++H Y++ W +++F VD+ PIR + P + M VY S+W+A W
Sbjct: 134 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDASSW 190
Query: 192 ATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSE 251
AT+ G+ K D+ + PF+ Y+ F + +C A A C+ ++ + +
Sbjct: 191 ATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-------ASSCNPASVSPY-------GQ 236
Query: 252 LNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 286
L+ Q + WV+ N+++Y+YC D +R + EC
Sbjct: 237 LSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 152/275 (55%), Gaps = 25/275 (9%)
Query: 20 VSSAKFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDS 79
++S FD Y W H + D +L + LD+ SG+GF S ++Y G IKL G +
Sbjct: 17 ITSLGFDQGYTNLWGPQHQRVDQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYT 76
Query: 80 AGTVTAFYMSS--DGP-NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDL 131
AG +T+FY+S+ D P H+E D EFLG G+PY +QTNV++ G G+ RE R+ L
Sbjct: 77 AGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHL 136
Query: 132 WFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDW 191
WFDPT+++H Y++ W +++F VD+ PIR + P + + VY S+W+A W
Sbjct: 137 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSW 193
Query: 192 ATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSE 251
AT+ G+ K D+ + PF+ Y+ F + +C A A C+ ++ + +
Sbjct: 194 ATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-------ASSCNPASVSPY-------GQ 239
Query: 252 LNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 286
L+ Q + WV+ N+++Y+YC D +R + EC
Sbjct: 240 LSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 33 WAFDHVQYDG-DTLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAF 86
WAFDHV ++L+L + + G G S Y +G + +K + G V+AF
Sbjct: 21 WAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMKPA--KNVGIVSAF 78
Query: 87 YMSS---DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYS 143
Y S+ DG +E D EFLG T + VQ N Y NGVGN E+ ++L FD +HTY+
Sbjct: 79 YTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYA 135
Query: 144 LLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIW---NADDW 191
W + + VD L+H +Y S+W D+W
Sbjct: 136 FDWQPNSIKWYVDG-------QLKHTATTQIPQTPGKIYMSLWAGAGVDEW 179
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 52 YSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTT 107
Y+GA + ++ K+ +G Q+++ + G V++F+ + GP H +E D EFLG T
Sbjct: 79 YAGAEYRTRDKFGYGLY--QVRMKPAKNPGIVSSFFTYT-GPVHGTPWDEIDIEFLGKDT 135
Query: 108 GEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 156
+ VQ N Y N GN E DL FD +++FH Y+ W + +LVD
Sbjct: 136 TK---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVD 181
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 28 LYQTSWAFDHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAG 81
++ +W ++V + D LKL L + + A + S + Y +G + +K + G
Sbjct: 27 VFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTG 84
Query: 82 TVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTK 137
V++F+ + GP H +E D EFLG T + VQ N Y NGVG E+ + L FD +K
Sbjct: 85 IVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASK 140
Query: 138 EFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNA---DDW 191
FHTY+ W + + VD + HT + IP + M ++WN DDW
Sbjct: 141 GFHTYAFDWQPGYIKWYVDG--VLKHTATAN--IPSTPGKIM---MNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 28 LYQTSWAFDHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAG 81
++ +W ++V + D LKL L + + A + S + Y +G + +K + G
Sbjct: 29 VFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTG 86
Query: 82 TVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTK 137
V++F+ + GP H +E D EFLG T + VQ N Y NGVG E+ + L FD +K
Sbjct: 87 IVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASK 142
Query: 138 EFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNA---DDW 191
FHTY+ W + + VD + HT + IP + M ++WN DDW
Sbjct: 143 GFHTYAFDWQPGYIKWYVD--GVLKHTATAN--IPSTPGKIM---MNLWNGTGVDDW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 28 LYQTSWAFDHVQYDGD-TLKLNL-----DNYSGAGFASKSKYLFGKVSIQIKLVGGDSAG 81
++ +W ++V + D LKL L + + A + S + Y +G + +K + G
Sbjct: 29 VFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTG 86
Query: 82 TVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTK 137
V++F+ + GP H ++ D +FLG T + VQ N Y NGVG E+ + L FD +K
Sbjct: 87 IVSSFFTYT-GPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASK 142
Query: 138 EFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNA---DDW 191
FHTY+ W + + VD + HT + IP + M ++WN DDW
Sbjct: 143 GFHTYAFDWQPGYIKWYVDG--VLKHTATAN--IPSTPGKIM---MNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 60 KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQT 115
+S ++G ++ + + G V++F+ + GP H +E D EFLG T + VQ
Sbjct: 7 RSTNIYGYGLYEVSMKPAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 116 NVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPK 175
N Y NGVG E+ + L FD +K FHTY+ W + + VD + HT + IP
Sbjct: 63 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATAN--IPSTP 118
Query: 176 DQAMGVYSSIWNA---DDW 191
+ M ++WN DDW
Sbjct: 119 GKIM---MNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 60 KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQT 115
+S ++G ++ + + G V++F+ + GP H +E D EFLG T + VQ
Sbjct: 7 RSTNIYGYGLYEVSMKPAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 116 NVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPK 175
N Y NGVG E+ + L FD +K FHTY+ W + + VD + HT + IP
Sbjct: 63 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATAN--IPSTP 118
Query: 176 DQAMGVYSSIWNA---DDW 191
+ M ++WN DDW
Sbjct: 119 GKIM---MNLWNGTGVDDW 134
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 59 SKSKYLFGKVSIQIKLVGGDSAGTVTAFYM---SSDGPNHNEFDFEFLGNTTGEPYLVQT 115
++S +G ++++ + G V++F+ +DG +E D EFLG T + VQ
Sbjct: 88 NRSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQF 144
Query: 116 NVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPK 175
N Y NG GN E+ +DL FD +HTY+ W + + VD TN IP
Sbjct: 145 NYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQ----IPTTP 200
Query: 176 DQAMGVYSSIWNA---DDW 191
+ M ++WN D+W
Sbjct: 201 GKIM---MNLWNGTGVDEW 216
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 60 KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQT 115
+S ++G ++ + + G V++F+ + GP H +E D EFLG T + VQ
Sbjct: 7 RSTNIYGYGLYEVSMKPAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQF 62
Query: 116 NVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPK 175
N Y NGVG E+ + L FD +K FHTY+ W + + VD + HT + IP
Sbjct: 63 NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATAN--IPSTP 118
Query: 176 DQAMGVYSSIWNA---DDW 191
+ M ++WN DDW
Sbjct: 119 GKIM---MNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query: 59 SKSKYLFGKVSIQIKLVGGDSAGTVTAFYM---SSDGPNHNEFDFEFLGNTTGEPYLVQT 115
++S +G ++ + + G V++F+ +DG +E D EFLG T + VQ
Sbjct: 64 NRSVQTYGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQF 120
Query: 116 NVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD------------ETPIRVH 163
N Y NGVGN E+ ++L FD +HTY+ W + + VD +TP ++
Sbjct: 121 NYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQLKHTATTQIPQTPGKIM 180
Query: 164 TNL-EHKGIPFPKDQAMGVYSSI 185
NL G+ D+ +G Y+ +
Sbjct: 181 MNLWNGAGV----DEWLGSYNGV 199
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 79 SAGTVTAFYMSSDGPNH----NEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFD 134
+ G V++F+ + GP H +E D EFLG T + VQ N Y NGVG E+ + L FD
Sbjct: 1 NTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFD 56
Query: 135 PTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNA---DDW 191
+K FHTY+ W + + VD + HT + IP + M ++WN DDW
Sbjct: 57 ASKGFHTYAFDWQPGYIKWYVD--GVLKHTATAN--IPSTPGKIM---MNLWNGTGVDDW 109
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 47 LNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMS------SDGPNHNEFDF 100
+++ ++SGA + +Y +GK ++K+ ++GTV++ ++ +DG E D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 101 EFLGNTTGEPYLVQTNVYVNGVGNR---EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDE 157
E LG + G Q+N+ G + E+ + + FHTY L W V + VD
Sbjct: 60 EVLGKSPGS---FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 158 TPIR 161
+R
Sbjct: 117 QEVR 120
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 51 NYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMS------SDGPNHNEFDFEFLG 104
++SGA + + +GK ++K+ ++GTV++ ++ +DG E D E LG
Sbjct: 4 DFSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLG 61
Query: 105 NTTGEPYLVQTNVYVNGVGNREQRLD---LWFDPTKEFHTYSLLWNQRQVVFLVDETPIR 161
G Q+N+ G ++ + + + FHTY L W V + VD +R
Sbjct: 62 KNPGS---FQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 51 NYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMS------SDGPNHNEFDFEFLG 104
++SGA + + +GK ++K+ ++GTV++ ++ +DG E D E LG
Sbjct: 3 DFSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLG 60
Query: 105 NTTGEPYLVQTNVYVNGVGNR---EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIR 161
G Q+N+ G + E+ + + FHTY L W V + VD +R
Sbjct: 61 KNPGS---FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 51 NYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMS------SDGPNHNEFDFEFLG 104
++SGA + + +GK ++K+ ++GTV++ + +DG E D E LG
Sbjct: 4 DFSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLG 61
Query: 105 NTTGEPYLVQTNVYVNGVGNR---EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIR 161
G Q+N+ G + E+ + + FHTY L W V + VD +R
Sbjct: 62 KNPGS---FQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 122 VGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGV 181
VG E+ + L FD +K FHTY+ W + + VD + HT + IP + M
Sbjct: 1 VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATAN--IPSTPGKIM-- 54
Query: 182 YSSIWNA---DDW 191
++WN DDW
Sbjct: 55 -MNLWNGTGVDDW 66
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 51 NYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMS------SDGPNHNEFDFEFLG 104
++SGA + + +GK + K ++GTV++ ++ +DG E D E LG
Sbjct: 3 DFSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLG 60
Query: 105 NTTGEPYLVQTNVYVNGVGNR---EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIR 161
P Q+N+ G + E+ + + FHTY L W V + VD +R
Sbjct: 61 KN---PGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 47 LNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMS------SDGPNHNEFDF 100
++ ++SGA + + +GK + K ++GTV++ ++ +DG E D
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDI 59
Query: 101 EFLGNTTGEPYLVQTNVYVNGVGNR---EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDE 157
E LG P Q+N+ G + E+ + + FHTY L W V + VD
Sbjct: 60 EVLGKN---PGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 158 TPIR 161
+R
Sbjct: 117 QEVR 120
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 45 LKLNLDNYSGAGFAS-------KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG----- 92
++ ++Y G + S K+ + +G+ I+ +L G GT A +M D
Sbjct: 58 IEARRESYEGREYTSARLVTRGKASWTYGRFEIRARLPSG--RGTWPAIWMLPDRQTYGS 115
Query: 93 ---PNHNEFDF-EFLG-NTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTK--EFHTYSLL 145
P++ E D E +G N V T Y + +G QR PT +FH Y++
Sbjct: 116 AYWPDNGEIDIAEHVGFNPDVVHGTVHTKAYNHLLGT--QRGGSIRVPTARTDFHVYAIE 173
Query: 146 WNQRQVVFLVDET-----PIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 196
W ++ + VD++ P TN E +P DQ + +I W Q G
Sbjct: 174 WTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMNIAVGGTWGGQQG 229
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 54 GAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFY 87
G FA+ K LFGK ++I +VG D+AG T Y
Sbjct: 2 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILY 35
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 54 GAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFY 87
G FA+ K LFGK ++I +VG D+AG T Y
Sbjct: 1 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILY 34
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Query: 121 GVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMG 180
G+ N+ + +W T + +++W RQ + D+ + HT + H+ D
Sbjct: 79 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFS 138
Query: 181 VYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEK 240
W D+ +G + K D F + V NA +
Sbjct: 139 ATKVRWLLDN--IEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIH 196
Query: 241 RFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRF 279
+ WD+ L LN+ S L V++N +Y + T + RF
Sbjct: 197 KLEWDQEILDLLNIP-SSMLPEVKSNSEVYGH-TRSYRF 233
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Query: 121 GVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMG 180
G+ N+ + +W T + +++W RQ + D+ + HT + H+ D
Sbjct: 91 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFS 150
Query: 181 VYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEK 240
W D+ +G + K D F + V NA +
Sbjct: 151 ATKVRWLLDN--IEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIH 208
Query: 241 RFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRF 279
+ WD+ L LN+ S L V++N +Y + T + RF
Sbjct: 209 KLEWDQEILDLLNIP-SSMLPEVKSNSEVYGH-TRSYRF 245
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 3/153 (1%)
Query: 121 GVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMG 180
G+ N+ + +W T + +++W RQ + D+ + HT + H+ D
Sbjct: 74 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFS 133
Query: 181 VYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEK 240
W D+ +G + K D F + V NA +
Sbjct: 134 ATKVRWLLDN--IEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIH 191
Query: 241 RFWWDEPTLSELNVHQSHQLMWVRANHLIYDYC 273
+ WD+ L LN+ S L V++N +Y +
Sbjct: 192 KLEWDQEILDLLNI-PSSMLPEVKSNSEVYGHT 223
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 3/153 (1%)
Query: 121 GVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMG 180
G+ N+ + +W T + +++W RQ + D+ + HT + H+ D
Sbjct: 78 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFS 137
Query: 181 VYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEK 240
W D+ +G + K D F + V NA +
Sbjct: 138 ATKVRWLLDN--IEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIH 195
Query: 241 RFWWDEPTLSELNVHQSHQLMWVRANHLIYDYC 273
+ WD+ L LN+ S L V++N +Y +
Sbjct: 196 KLEWDQEILDLLNIP-SSMLPEVKSNSEVYGHT 227
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 3/153 (1%)
Query: 121 GVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMG 180
G+ N+ + +W T + +++W RQ + D+ + HT + H+ D
Sbjct: 79 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFS 138
Query: 181 VYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEK 240
W D+ +G + K D F + V NA +
Sbjct: 139 ATKVRWLLDN--IEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIH 196
Query: 241 RFWWDEPTLSELNVHQSHQLMWVRANHLIYDYC 273
+ WD+ L LN+ S L V++N +Y +
Sbjct: 197 KLEWDQEILDLLNIP-SSMLPEVKSNSEVYGHT 228
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 3/153 (1%)
Query: 121 GVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMG 180
G+ N+ + +W T + +++W RQ + D+ + HT + H+ D
Sbjct: 78 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFS 137
Query: 181 VYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEK 240
W D+ +G + K D F + V NA +
Sbjct: 138 ATKVRWLLDN--IEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIH 195
Query: 241 RFWWDEPTLSELNVHQSHQLMWVRANHLIYDYC 273
+ WD+ L LN+ S L V++N +Y +
Sbjct: 196 KLEWDQEILDLLNIP-SSMLPEVKSNSEVYGHT 227
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 24 KFDDLYQTSWAFDHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKL--VGGDSAG 81
KFD++ ++ + ++GD L+ N++ KV ++KL VGG S G
Sbjct: 77 KFDEIDAANFYCKYTLFEGDVLRDNIE----------------KVVYEVKLEAVGGGSKG 120
Query: 82 TVTAFYMSSDGPNHNE 97
+T Y G NE
Sbjct: 121 KITVTYHPKPGCTVNE 136
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 54 GAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFY 87
G +S LFGK ++I +VG D+AG T Y
Sbjct: 2 GLTISSLFSRLFGKKQMRILMVGLDAAGKTTILY 35
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 67 KVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFL-------GNTTGEPYLVQTN-VY 118
K S +VGG G TA++++ NH + L GN ++++N ++
Sbjct: 19 KKSYDAIIVGGGGHGLATAYFLAK---NHGITNVAVLEKGWLAGGNMARNTTIIRSNYLW 75
Query: 119 VNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFL------VDETPIRVHTN 165
G E+ L LW + E Y L++QR V+ L V E+ RV N
Sbjct: 76 DESAGIYEKSLKLW-EQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEAN 127
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 67 KVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFL-------GNTTGEPYLVQTN-VY 118
K S +VGG G TA++++ NH + L GN ++++N ++
Sbjct: 19 KKSYDAIIVGGGGHGLATAYFLAK---NHGITNVAVLEKGWLAGGNXARNTTIIRSNYLW 75
Query: 119 VNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFL------VDETPIRVHTN 165
G E+ L LW + E Y L++QR V+ L V E+ RV N
Sbjct: 76 DESAGIYEKSLKLW-EQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEAN 127
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 156 DETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFD 215
D T V+ NL K G+ SS W+ + TQGG + + +A D
Sbjct: 267 DPTKFPVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGD--VAGGLAMD 324
Query: 216 IDACECPA 223
ID C A
Sbjct: 325 IDNCSVMA 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,713,208
Number of Sequences: 62578
Number of extensions: 420629
Number of successful extensions: 1034
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 48
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)