Query 022821
Match_columns 291
No_of_seqs 287 out of 1597
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 9.7E-86 2.1E-90 610.1 33.4 285 1-290 1-290 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.2E-83 2.6E-88 591.6 31.6 258 22-286 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 4.6E-45 1E-49 325.2 24.9 176 32-220 13-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 1.2E-37 2.6E-42 278.2 24.1 174 29-217 25-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.7E-35 3.7E-40 256.7 20.4 174 26-215 2-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 8E-33 1.7E-37 244.2 22.9 171 30-217 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 2.6E-32 5.7E-37 250.7 22.0 177 35-217 57-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 4.6E-32 9.9E-37 244.7 22.2 177 32-217 34-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 2.8E-29 6.2E-34 232.3 21.7 152 53-217 80-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 2.2E-28 4.7E-33 229.0 19.2 180 33-217 38-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 5.7E-28 1.2E-32 222.1 20.6 181 32-217 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 99.9 3.8E-27 8.2E-32 224.0 17.0 139 52-192 99-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 2.8E-26 6E-31 217.3 17.8 135 53-189 97-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 2.7E-25 5.8E-30 212.7 18.8 176 28-213 71-261 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 6.2E-21 1.3E-25 134.5 4.4 47 239-286 4-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.5 9E-14 2E-18 137.4 15.0 172 39-217 164-452 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.4 5.2E-12 1.1E-16 118.0 13.4 141 43-192 49-251 (293)
18 PF09264 Sial-lect-inser: Vibr 95.3 0.3 6.5E-06 43.3 11.3 106 46-164 10-121 (198)
19 PF06439 DUF1080: Domain of Un 94.0 3 6.6E-05 35.3 14.3 103 53-166 42-156 (185)
20 PF13385 Laminin_G_3: Concanav 93.4 2.3 5E-05 33.9 12.0 65 135-217 83-147 (157)
21 smart00210 TSPN Thrombospondin 91.1 4.3 9.4E-05 35.3 11.6 87 68-164 56-144 (184)
22 smart00560 LamGL LamG-like jel 91.0 7.6 0.00016 31.7 14.4 70 135-221 59-130 (133)
23 PF10287 DUF2401: Putative TOS 84.1 4.6 0.0001 37.1 7.5 76 68-149 103-207 (235)
24 cd00110 LamG Laminin G domain; 78.0 34 0.00074 27.4 15.6 86 64-163 20-106 (151)
25 PF09224 DUF1961: Domain of un 73.4 14 0.00029 33.7 6.9 59 137-216 159-218 (218)
26 PF14099 Polysacc_lyase: Polys 72.3 65 0.0014 28.3 11.2 75 130-216 145-224 (224)
27 cd00152 PTX Pentraxins are pla 67.3 41 0.00089 29.5 8.7 72 135-217 88-161 (201)
28 smart00159 PTX Pentraxin / C-r 58.6 1.3E+02 0.0028 26.5 16.0 72 135-217 88-161 (206)
29 smart00282 LamG Laminin G doma 46.3 82 0.0018 25.0 6.5 28 136-163 61-88 (135)
30 PF02973 Sialidase: Sialidase, 43.7 2.4E+02 0.0052 25.2 11.9 132 62-220 31-176 (190)
31 PF02210 Laminin_G_2: Laminin 43.3 1.5E+02 0.0032 22.6 9.0 74 136-217 53-126 (128)
32 KOG1691 emp24/gp25L/p24 family 42.0 1.8E+02 0.004 26.4 8.4 56 44-104 61-120 (210)
33 KOG1834 Calsyntenin [Extracell 36.7 35 0.00076 36.1 3.4 52 136-192 441-492 (952)
34 PF04202 Mfp-3: Foot protein 3 34.1 31 0.00067 25.7 1.9 35 1-35 1-38 (71)
35 KOG3049 Succinate dehydrogenas 30.9 30 0.00065 31.7 1.6 24 239-263 204-227 (288)
36 cd00070 GLECT Galectin/galacto 28.6 1.4E+02 0.003 24.0 5.2 49 116-165 56-105 (127)
37 PF07691 PA14: PA14 domain; I 26.5 1E+02 0.0022 24.7 4.0 29 135-164 57-85 (145)
38 PRK02710 plastocyanin; Provisi 25.2 1.6E+02 0.0034 23.7 4.9 14 1-14 1-14 (119)
39 PF06832 BiPBP_C: Penicillin-B 24.5 87 0.0019 23.6 3.1 36 150-187 44-79 (89)
40 KOG4352 Fas-mediated apoptosis 23.1 1.5E+02 0.0033 25.7 4.4 38 125-163 91-128 (187)
41 PF00337 Gal-bind_lectin: Gala 21.4 2.9E+02 0.0062 22.1 5.8 50 115-165 60-110 (133)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=9.7e-86 Score=610.13 Aligned_cols=285 Identities=47% Similarity=0.894 Sum_probs=252.0
Q ss_pred CchhhHHHHHHHHHH-HHHHh-ccccccccccceecCCc--eEecCCeEEEEEeCCCcceEEEcceeeeceEEEEEEeeC
Q 022821 1 MAKMSLIFSLFVGLL-MVVLV-SSAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVG 76 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~w~~~~--~~~~g~~l~L~ld~~sgs~i~Sk~~f~YG~~eariKl~~ 76 (291)
||.|..+++++++++ ++.-. +..+|.++|.++|+.+| +..+|+.|+|+||+.+|++|+||..|+||+||||||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~ 80 (291)
T PLN03161 1 MASLKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVP 80 (291)
T ss_pred ChhHHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCC
Confidence 666655544433332 21111 35689999999999999 455778999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeccCCCCCCceEEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCCCCCCCcEEEEEEEccceEEEEEc
Q 022821 77 GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVD 156 (291)
Q Consensus 77 g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVD 156 (291)
|+++|+||||||++.++.+|||||||||+++++|+++|||+|.+|.++|++++.++|||+++||+|+|+|+|++|+||||
T Consensus 81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD 160 (291)
T PLN03161 81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD 160 (291)
T ss_pred CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence 88899999999999777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEEeecCCCcccCCCCCCCCCC
Q 022821 157 ETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSS 236 (291)
Q Consensus 157 G~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~~C~~~~~~~~~~~~~~C~~ 236 (291)
|++||++++.+..|.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.+++. .....|..
T Consensus 161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~----~~~~~c~~ 236 (291)
T PLN03161 161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGP----VSIKQCAD 236 (291)
T ss_pred CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCC----CCccccCC
Confidence 99999999877778899988999999999999999999999999999999999999999999987641 02346963
Q ss_pred CcccCcCcCccCcccCCHHHHHHHHHHhhcCeeeecCcCCCCCCC-CCCCccCCC
Q 022821 237 SAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPA-IPTECVHHR 290 (291)
Q Consensus 237 ~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~p~ec~~~~ 290 (291)
. +...||+++.|++|+++|+++|+|||+||||||||+|++|||+ +||||.+++
T Consensus 237 ~-~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~ 290 (291)
T PLN03161 237 P-TPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ 290 (291)
T ss_pred C-CccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence 1 1357999999999999999999999999999999999999999 899998764
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.2e-83 Score=591.64 Aligned_cols=258 Identities=57% Similarity=1.071 Sum_probs=240.7
Q ss_pred cccccccccceecCCc--eEecCCeEEEEEeCCCcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCC-CCCCce
Q 022821 22 SAKFDDLYQTSWAFDH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG-PNHNEF 98 (291)
Q Consensus 22 ~~~~~~~~~~~w~~~~--~~~~g~~l~L~ld~~sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~-~~~~EI 98 (291)
++.|+++|.++|+.+| +.++|+.|+|+||+++|++|+|+..|+||+||||||+|+|+++|+||||||++++ |.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4679999999999999 5566889999999999999999999999999999999998889999999999998 889999
Q ss_pred EEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCc
Q 022821 99 DFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQA 178 (291)
Q Consensus 99 DiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 178 (291)
|||++|+++|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777889997799
Q ss_pred eeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEEeecCCCcccCCCCCCCCCCCcccCcCcCccCcccCCHHHHH
Q 022821 179 MGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSH 258 (291)
Q Consensus 179 m~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~~C~~~~~~~~~~~~~~C~~~~~~~~w~~~~~~~~l~~~~~~ 258 (291)
|+|++|||+||+|||+||++|+||+++||+|.|++|+|+||.+++ ....|... ....||+.+.+++|+++|++
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 235 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDP------GDSFSSCS-CTEDWWNGSTYQQLSANQQR 235 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCC------CCccccCC-CccccccccccccCCHHHHH
Confidence 999999999999999999999999999999999999999999775 23446421 12569999999999999999
Q ss_pred HHHHHhhcCeeeecCcCCCCCCCCCCCc
Q 022821 259 QLMWVRANHLIYDYCTDTSRFPAIPTEC 286 (291)
Q Consensus 259 ~~~~~~~~~~~y~yc~d~~r~~~~p~ec 286 (291)
+|+|||+||||||||+|++|||.+||||
T Consensus 236 ~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 236 AMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 9999999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.6e-45 Score=325.18 Aligned_cols=176 Identities=30% Similarity=0.553 Sum_probs=155.1
Q ss_pred eecCCceEecCCeEEEEEeCC-CcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCCCCCCceEEEEcCCCCCCC
Q 022821 32 SWAFDHVQYDGDTLKLNLDNY-SGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEP 110 (291)
Q Consensus 32 ~w~~~~~~~~g~~l~L~ld~~-sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p 110 (291)
+..++++..++++|.|+|++. +|++|.|+++|+||+||||||+|.+ +|+||||||++++ ++|||||++|+ +|
T Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~--~gEIDIE~~G~---~~ 85 (203)
T cd02183 13 TVTSGTVDYDDDGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD--LDEIDWEWVGG---DL 85 (203)
T ss_pred EecCCcEeECCCeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC--CCEEEEEecCC---CC
Confidence 344555777778899999998 7999999999999999999999998 8999999999976 89999999996 46
Q ss_pred ceEEeeEEeCCCC---CcceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCC-CCCCCCCCCceeEEEeec
Q 022821 111 YLVQTNVYVNGVG---NREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEH-KGIPFPKDQAMGVYSSIW 186 (291)
Q Consensus 111 ~~~qtN~~~~g~g---~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~~Pm~l~lnlW 186 (291)
..+|+|+|.+|.. ++++.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+..|| ++||+|++|+|
T Consensus 86 ~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l~ln~W 164 (203)
T cd02183 86 TQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRLQIGIW 164 (203)
T ss_pred CEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEEEEEEe
Confidence 7899999987654 355677788888999999999999999999999999999987542 356899 99999999999
Q ss_pred cCCC---------cccCCCcccccCCCccEEEEEeEEEEEeec
Q 022821 187 NADD---------WATQGGRVKTDWSHAPFIASYKGFDIDACE 220 (291)
Q Consensus 187 ~gg~---------Wat~GG~~~id~~~~Pf~a~~~~v~v~~C~ 220 (291)
.||+ || ||. +||+.+||+|+|++|+|. |.
T Consensus 165 ~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~-~~ 202 (203)
T cd02183 165 AGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVT-DY 202 (203)
T ss_pred cCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEE-eC
Confidence 9985 99 775 999999999999999998 64
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1.2e-37 Score=278.18 Aligned_cols=174 Identities=30% Similarity=0.615 Sum_probs=147.8
Q ss_pred ccceecCCceEecCCeEEEEEeCC-------CcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCC---CCCCce
Q 022821 29 YQTSWAFDHVQYDGDTLKLNLDNY-------SGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEF 98 (291)
Q Consensus 29 ~~~~w~~~~~~~~g~~l~L~ld~~-------sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~---~~~~EI 98 (291)
...+|..+|+.-+++.|+|++.+. ++++|.|+.+|+||+||||||++.+ +|+|+||||++.. ..++||
T Consensus 25 ~~~~~~~~nv~v~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 25 FNCTWSADNVEFSDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred EeeeEccccEEEECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 345778888444466799998754 4799999999999999999999987 8999999999742 457999
Q ss_pred EEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCc
Q 022821 99 DFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQA 178 (291)
Q Consensus 99 DiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 178 (291)
|||++|++ +..+++|+|.++.++.+..+.+.++++++||+|+|+|+|++|+|||||+++++++..+ ..+| ++|
T Consensus 103 DiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p-~~p 175 (212)
T cd02175 103 DIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIP-DTP 175 (212)
T ss_pred EEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCC-CCC
Confidence 99999974 4578999998877666667778889999999999999999999999999999998643 3688 999
Q ss_pred eeEEEeeccCC---CcccCCCcccccCCCccEEEEEeEEEEE
Q 022821 179 MGVYSSIWNAD---DWATQGGRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 179 m~l~lnlW~gg---~Wat~GG~~~id~~~~Pf~a~~~~v~v~ 217 (291)
|+|++|+|.++ +|+ |. +|. .+|++|+||+||+.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 43 677 88999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.7e-35 Score=256.70 Aligned_cols=174 Identities=35% Similarity=0.651 Sum_probs=148.6
Q ss_pred cccccceecCCce-EecCCeEEEEEeC-----CCcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCC--CCCCc
Q 022821 26 DDLYQTSWAFDHV-QYDGDTLKLNLDN-----YSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG--PNHNE 97 (291)
Q Consensus 26 ~~~~~~~w~~~~~-~~~g~~l~L~ld~-----~sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~--~~~~E 97 (291)
.+++.++|+.+|+ ..+|+.|.|++++ .++++|+|+..++||+||+|||++.+ .|+++||||.+.+ +.++|
T Consensus 2 ~~~~~~~~~~~nv~~~~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVEDGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CCTEEEEETCCGEEEETTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CCceEEeeCCCcEEEcCCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 3678999999995 4455699999998 67999999999999999999998876 8999999997532 67999
Q ss_pred eEEEEcCCCCCCCceEEeeEEeCCCCCc--ceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCC
Q 022821 98 FDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPK 175 (291)
Q Consensus 98 IDiE~lGn~~g~p~~~qtN~~~~g~g~r--e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 175 (291)
||||++|++. ..+++|+|..+.+.. +.++.+.+++.++||+|+|+|+|++|+|||||++++++......+.+||+
T Consensus 80 IDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 9999999754 469999999888765 56677788999999999999999999999999999999987554446895
Q ss_pred CCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEE
Q 022821 176 DQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFD 215 (291)
Q Consensus 176 ~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~ 215 (291)
..||+|.+++|.+++|++..| .|+|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 599999999999999996555 47777776
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=8e-33 Score=244.16 Aligned_cols=171 Identities=34% Similarity=0.561 Sum_probs=141.3
Q ss_pred cceecCCceEecC-CeEEEEEeCC------CcceEEE-cceeeeceEEEEEEeeCCCCCceEEEEEeccCC---CCCCce
Q 022821 30 QTSWAFDHVQYDG-DTLKLNLDNY------SGAGFAS-KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEF 98 (291)
Q Consensus 30 ~~~w~~~~~~~~g-~~l~L~ld~~------sgs~i~S-k~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~---~~~~EI 98 (291)
...|..+|+..++ +.|.|++.+. ++++|.| ++.|+||+||+|||++.+ .|+|+||||++.+ +..+||
T Consensus 24 ~~~~~~~nv~~~~~G~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 24 NMTNSPNNVYVENDGGLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred eEEECccCEEEeCCCeEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 3467777754444 6799998653 5799999 999999999999999987 8999999999986 679999
Q ss_pred EEEEcCCCCCCCceEEeeEEeCCCC-----CcceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCC
Q 022821 99 DFEFLGNTTGEPYLVQTNVYVNGVG-----NREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPF 173 (291)
Q Consensus 99 DiE~lGn~~g~p~~~qtN~~~~g~g-----~re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 173 (291)
|||++|++ +..+++++|..+.+ .......+.+++.++||+|+|+|+|++|+|||||++++++.+. .
T Consensus 102 DiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------~ 172 (210)
T cd00413 102 DIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------V 172 (210)
T ss_pred EEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------C
Confidence 99999975 45788888876543 2233455566678999999999999999999999999998752 6
Q ss_pred CCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEE
Q 022821 174 PKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 174 P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~ 217 (291)
| .+||+|+||+|.+++|++ . .+....|..|+|++|||.
T Consensus 173 p-~~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 173 P-DDPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred C-CCCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEEC
Confidence 7 899999999999998882 2 345688999999999973
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.6e-32 Score=250.70 Aligned_cols=177 Identities=19% Similarity=0.177 Sum_probs=134.0
Q ss_pred CCceEecCCeEEEEEeCC-----------CcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccCC-CCCCceEE-E
Q 022821 35 FDHVQYDGDTLKLNLDNY-----------SGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG-PNHNEFDF-E 101 (291)
Q Consensus 35 ~~~~~~~g~~l~L~ld~~-----------sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~-~~~~EIDi-E 101 (291)
.+|+.-+++.|.|+..+. ++|+|.|+..|+|||||||||+|.+ . .+|||||++.+ +.++|||| |
T Consensus 57 ~~nv~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEIDI~E 133 (258)
T cd02178 57 ADNVSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEIDILE 133 (258)
T ss_pred cCCeEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEEhhh
Confidence 344434455788888643 3689999999999999999999976 4 57999999974 67999998 9
Q ss_pred EcCCCC--CCCceEEeeEEeCCCC-----Cc---ceeEecCCCCCCCcEEEEEEEc-cceEEEEEcCeeEEEEeccCCCC
Q 022821 102 FLGNTT--GEPYLVQTNVYVNGVG-----NR---EQRLDLWFDPTKEFHTYSLLWN-QRQVVFLVDETPIRVHTNLEHKG 170 (291)
Q Consensus 102 ~lGn~~--g~p~~~qtN~~~~g~g-----~r---e~~~~l~fdps~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~~~g 170 (291)
++|+.. ..+..+++++|.-+.+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.+. .
T Consensus 134 ~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~-~ 212 (258)
T cd02178 134 HYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI-T 212 (258)
T ss_pred ccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc-C
Confidence 999763 2246788887643221 11 1223445667899999999999 999999999999999987543 3
Q ss_pred CCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEE
Q 022821 171 IPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 171 ~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~ 217 (291)
...||++||+|+||++.|| |++..+. ...-...|..|+||+|||.
T Consensus 213 ~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 213 DGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 4567799999999999998 9932121 1223456999999999986
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=4.6e-32 Score=244.67 Aligned_cols=177 Identities=22% Similarity=0.367 Sum_probs=139.7
Q ss_pred eecCCceEecCCeEEEEEeCC----------CcceEEE--cceeeeceEEEEEEeeCCCCCceEEEEEeccCC------C
Q 022821 32 SWAFDHVQYDGDTLKLNLDNY----------SGAGFAS--KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG------P 93 (291)
Q Consensus 32 ~w~~~~~~~~g~~l~L~ld~~----------sgs~i~S--k~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~------~ 93 (291)
.+..+|+.-+++.|.|+..+. ++|+|.| ++.|+|||||||||+|.+ .|++|||||++.+ +
T Consensus 34 ~~~~~nv~v~~G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~w~ 111 (235)
T cd08023 34 TYRPENAYVEDGNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVGWP 111 (235)
T ss_pred eCCCCCeEEECCEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCCCC
Confidence 445556444455788887542 3689999 788999999999999987 8999999999875 4
Q ss_pred CCCceEE-EEcCCCCCCCceEEeeEEeCCCC----CcceeEecCC-CCCCCcEEEEEEEccceEEEEEcCeeEEEEeccC
Q 022821 94 NHNEFDF-EFLGNTTGEPYLVQTNVYVNGVG----NREQRLDLWF-DPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLE 167 (291)
Q Consensus 94 ~~~EIDi-E~lGn~~g~p~~~qtN~~~~g~g----~re~~~~l~f-dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~ 167 (291)
..+|||| |++|+. |..+++++|..+.. ..+..+.+.. +..++||+|+++|+|++|+|||||++|+++++..
T Consensus 112 ~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~ 188 (235)
T cd08023 112 ASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNPN 188 (235)
T ss_pred CCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcccc
Confidence 5789998 999975 45788999976643 2334455554 6899999999999999999999999999998754
Q ss_pred CCC-CCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEE
Q 022821 168 HKG-IPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 168 ~~g-~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~ 217 (291)
... ..+|+++||+|+||++.+++|+ |. ...-...|..|+||+|||.
T Consensus 189 ~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 189 TDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 321 2356699999999999999999 32 1244578999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=2.8e-29 Score=232.29 Aligned_cols=152 Identities=25% Similarity=0.264 Sum_probs=115.2
Q ss_pred CcceEEEcceeeeceEEEEEEeeC-CCCCceEEEEEeccC---------CCCCCceEE-EEcCCC---CCCCce----EE
Q 022821 53 SGAGFASKSKYLFGKVSIQIKLVG-GDSAGTVTAFYMSSD---------GPNHNEFDF-EFLGNT---TGEPYL----VQ 114 (291)
Q Consensus 53 sgs~i~Sk~~f~YG~~eariKl~~-g~s~G~v~AFwl~s~---------~~~~~EIDi-E~lGn~---~g~p~~----~q 114 (291)
++|.+.|+.+|+|||||||||+++ + +|+||||||+++ .|.++|||| |.+|.. .++++. +|
T Consensus 80 tSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H 157 (269)
T cd02177 80 TSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDIDYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLH 157 (269)
T ss_pred eeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccCCCCcccCCCCCCCeEEEEEEecCCccccccccccceEEE
Confidence 568899999999999999999865 5 899999999985 156899999 777643 123444 44
Q ss_pred eeEEeCCCCC--c--------ceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEe
Q 022821 115 TNVYVNGVGN--R--------EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSS 184 (291)
Q Consensus 115 tN~~~~g~g~--r--------e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~ln 184 (291)
++++.++.+. + ...+.+++|++++||+|+|+|+|++|+|||||++++++.+ .+. .+||.+.++
T Consensus 158 ~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~------~~w-~~~~~~~~~ 230 (269)
T cd02177 158 AIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPN------KYW-HRPMNVTLS 230 (269)
T ss_pred EeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcC------Ccc-ccccEEeec
Confidence 4444454331 1 1234567789999999999999999999999999999874 334 788888888
Q ss_pred eccCC---------CcccCCCcccccCCCccEEEEEeEEEEE
Q 022821 185 IWNAD---------DWATQGGRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 185 lW~gg---------~Wat~GG~~~id~~~~Pf~a~~~~v~v~ 217 (291)
+-... .|+ |+. .+.+..|-.|+||+|||.
T Consensus 231 ~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 231 LGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred cccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 74432 355 442 456789999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=2.2e-28 Score=229.03 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=123.0
Q ss_pred ecCCceEecCCeEEEEEeC-------CCcceEEE--cceeeeceEEEEEEeeCC-CCCceEEEEEeccCC----------
Q 022821 33 WAFDHVQYDGDTLKLNLDN-------YSGAGFAS--KSKYLFGKVSIQIKLVGG-DSAGTVTAFYMSSDG---------- 92 (291)
Q Consensus 33 w~~~~~~~~g~~l~L~ld~-------~sgs~i~S--k~~f~YG~~eariKl~~g-~s~G~v~AFwl~s~~---------- 92 (291)
+.++|+.-.++.|.|+..+ .++++|.| |+.|+|||||||||+|.+ ...|+||||||+++.
T Consensus 38 Y~~~nv~v~~G~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~~~~ 117 (295)
T cd02180 38 YDPDAVTTINGSLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLATTE 117 (295)
T ss_pred ecCcCeEecCCeEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccccccc
Confidence 3445533344568888754 35789999 678899999999999963 237999999999852
Q ss_pred ---CC------CCceEE-EEcCCCC-CCCce---EE----------------eeEEeC------CC-CCcce-eE----e
Q 022821 93 ---PN------HNEFDF-EFLGNTT-GEPYL---VQ----------------TNVYVN------GV-GNREQ-RL----D 130 (291)
Q Consensus 93 ---~~------~~EIDi-E~lGn~~-g~p~~---~q----------------tN~~~~------g~-g~re~-~~----~ 130 (291)
|. .+|||| |.+|.+. +.... +| ..+|.. .. ++..+ .. .
T Consensus 118 ~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 197 (295)
T cd02180 118 GVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISCVTR 197 (295)
T ss_pred CCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccccccc
Confidence 32 489998 9998532 01111 11 111210 00 11101 00 1
Q ss_pred cCC----CCCCCcEEEEEEEcc-----ceEEEEEcCeeEEEEeccCC--C----CCCCCCCCceeEEEeeccCCCcccCC
Q 022821 131 LWF----DPTKEFHTYSLLWNQ-----RQVVFLVDETPIRVHTNLEH--K----GIPFPKDQAMGVYSSIWNADDWATQG 195 (291)
Q Consensus 131 l~f----dps~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~--~----g~~~P~~~Pm~l~lnlW~gg~Wat~G 195 (291)
+.- ...++||+|+|||+| ++|+|||||+++++++.... . ..++| ++||+|+||++.||+|+
T Consensus 198 ~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~--- 273 (295)
T cd02180 198 LNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ--- 273 (295)
T ss_pred cCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC---
Confidence 111 135789999999999 89999999999999986421 1 12466 99999999999999998
Q ss_pred CcccccCCCccEEEEEeEEEEE
Q 022821 196 GRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 196 G~~~id~~~~Pf~a~~~~v~v~ 217 (291)
|. +.+-...|..|+||+|||.
T Consensus 274 g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred CC-CcccCCCCCEEEEEEEEEE
Confidence 31 2345668999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=5.7e-28 Score=222.11 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=122.5
Q ss_pred eecCCceEec-CCeEEEEEeC-----CCcceEEEccee--ee----ceEEEEEEeeCCC---CCceEEEEEeccCC----
Q 022821 32 SWAFDHVQYD-GDTLKLNLDN-----YSGAGFASKSKY--LF----GKVSIQIKLVGGD---SAGTVTAFYMSSDG---- 92 (291)
Q Consensus 32 ~w~~~~~~~~-g~~l~L~ld~-----~sgs~i~Sk~~f--~Y----G~~eariKl~~g~---s~G~v~AFwl~s~~---- 92 (291)
+++.+|+.-+ ++.|.|+..+ .++++|.|+.++ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~~ 121 (259)
T cd02182 42 TNSTANVQLSGNGTLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRGN 121 (259)
T ss_pred cCCCcCEEEcCCCeEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccCC
Confidence 3344553333 4468887653 356899998765 33 3899999999741 36999999999863
Q ss_pred ----CCCCceEE-EEcCCCCCCCceEEeeEEeCCCC--CcceeEec--CCCCCCCcEEEEEEEcc-----ceEEEEEcCe
Q 022821 93 ----PNHNEFDF-EFLGNTTGEPYLVQTNVYVNGVG--NREQRLDL--WFDPTKEFHTYSLLWNQ-----RQVVFLVDET 158 (291)
Q Consensus 93 ----~~~~EIDi-E~lGn~~g~p~~~qtN~~~~g~g--~re~~~~l--~fdps~dfHtY~i~Wtp-----~~I~fyVDG~ 158 (291)
|..+|||| |..|.. +...++.++....+ .++..... ...+.++||+|+++|++ ++|+|||||+
T Consensus 122 ~~~WP~~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~ 198 (259)
T cd02182 122 GTNWPACGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGV 198 (259)
T ss_pred CCCCCccceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCE
Confidence 56789999 999853 34444433322111 11111000 01245899999999997 9999999999
Q ss_pred eEEEEeccCCC---CCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEEEE
Q 022821 159 PIRVHTNLEHK---GIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFDID 217 (291)
Q Consensus 159 ~vr~~~~~~~~---g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~v~ 217 (291)
++++++..... ..+.|+++||+|+||++.||+|++ ..-...-...|..|+||+|||.
T Consensus 199 ~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~~--~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 199 VYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWPG--APNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcCC--CCCcccccCCCceEEEEEEEEe
Confidence 99999864211 123345999999999999999992 2100112457999999999986
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=3.8e-27 Score=224.00 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=105.2
Q ss_pred CCcceEEE--cceeeeceEEEEEEeeCCCCCceEEEEEeccCC------CCCCceEE-EEcCCCCCCC-------ceEEe
Q 022821 52 YSGAGFAS--KSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG------PNHNEFDF-EFLGNTTGEP-------YLVQT 115 (291)
Q Consensus 52 ~sgs~i~S--k~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~------~~~~EIDi-E~lGn~~g~p-------~~~qt 115 (291)
.++|+|.| ++.|+|||||+|||+|.| .|+||||||++.+ |..+|||| |..|+....+ ..++.
T Consensus 99 ~~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~ 176 (330)
T cd08024 99 VMSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGS 176 (330)
T ss_pred eEEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEE
Confidence 46789999 567899999999999998 8999999999864 67899998 9999754221 23455
Q ss_pred eEEeCCCCC----ccee--E-ecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccC-------------------CC
Q 022821 116 NVYVNGVGN----REQR--L-DLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLE-------------------HK 169 (291)
Q Consensus 116 N~~~~g~g~----re~~--~-~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~ 169 (291)
.+|...... +... . ....+.+++||+|+|+|+|++|+|||||+++++++... ..
T Consensus 177 tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~ 256 (330)
T cd08024 177 TLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGG 256 (330)
T ss_pred EEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCccccc
Confidence 555422111 1111 1 11235678899999999999999999999999998521 01
Q ss_pred CCCCCCCCceeEEEeeccCCCcc
Q 022821 170 GIPFPKDQAMGVYSSIWNADDWA 192 (291)
Q Consensus 170 g~~~P~~~Pm~l~lnlW~gg~Wa 192 (291)
+...||++|++|+|||++||.|.
T Consensus 257 ~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 257 GKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CcCCCCCCCEEEEEEEEecCCCC
Confidence 24568999999999999999877
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=2.8e-26 Score=217.32 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=98.3
Q ss_pred CcceEEEc--ceeeeceEEEEEEeeCCCCCceEEEEEeccCC-------CCCCceEE-EEcCCCCCC---CceEEeeEEe
Q 022821 53 SGAGFASK--SKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG-------PNHNEFDF-EFLGNTTGE---PYLVQTNVYV 119 (291)
Q Consensus 53 sgs~i~Sk--~~f~YG~~eariKl~~g~s~G~v~AFwl~s~~-------~~~~EIDi-E~lGn~~g~---p~~~qtN~~~ 119 (291)
++|+|.|+ +.|+|||||+|||||.| .|+||||||++.+ |.++|||| |.+||..-. ..+..+.+|.
T Consensus 97 ~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~ 174 (321)
T cd02179 97 VSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYG 174 (321)
T ss_pred eeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEc
Confidence 46889996 57899999999999999 7999999999874 46799999 999985210 0111222222
Q ss_pred C----CCC-Ccce---eEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCC----------------CCCCCCC
Q 022821 120 N----GVG-NREQ---RLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEH----------------KGIPFPK 175 (291)
Q Consensus 120 ~----g~g-~re~---~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P~ 175 (291)
. ... .+.. ......+.+++||+|+|+|+|++|+|||||+++++++.... .....||
T Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPF 254 (321)
T cd02179 175 GPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPF 254 (321)
T ss_pred ccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCC
Confidence 1 111 1111 01112356789999999999999999999999999986321 1235689
Q ss_pred CCceeEEEeeccCC
Q 022821 176 DQAMGVYSSIWNAD 189 (291)
Q Consensus 176 ~~Pm~l~lnlW~gg 189 (291)
++|++|+|||++||
T Consensus 255 D~~FyliLNlAVGG 268 (321)
T cd02179 255 DKEFYLSLGVGVGG 268 (321)
T ss_pred CCCeEEEEEEEecC
Confidence 99999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.7e-25 Score=212.68 Aligned_cols=176 Identities=24% Similarity=0.414 Sum_probs=139.1
Q ss_pred cccceecCCc-eEecCCeEEEEEeC-------CCcceEEEcce--eeeceEEEEEEeeCCCCCceEEEEEeccC----CC
Q 022821 28 LYQTSWAFDH-VQYDGDTLKLNLDN-------YSGAGFASKSK--YLFGKVSIQIKLVGGDSAGTVTAFYMSSD----GP 93 (291)
Q Consensus 28 ~~~~~w~~~~-~~~~g~~l~L~ld~-------~sgs~i~Sk~~--f~YG~~eariKl~~g~s~G~v~AFwl~s~----~~ 93 (291)
...++|...+ .+..+..+.|.+++ +++++++|..+ |+||++|+|||++.+ .|+||||||++. +.
T Consensus 71 ~~~~~w~~~~~~lt~~~~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~ 148 (355)
T COG2273 71 TKNLTWYVSNVVLTIGGTLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGG 148 (355)
T ss_pred ccccceeecceeEeeCCeeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCC
Confidence 3444666666 56667788888875 46899999887 899999999999976 999999999985 35
Q ss_pred CCCceEEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCC-CCCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCC
Q 022821 94 NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWF-DPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIP 172 (291)
Q Consensus 94 ~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~f-dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 172 (291)
.++|||||++|++.. +..+|+|.+.++.++.+....+.+ +..++||+|+++|.++.|+|||||++++++... ..
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 689999999997643 456999999998887766666666 888999999999999999999999999999853 24
Q ss_pred CCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeE
Q 022821 173 FPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKG 213 (291)
Q Consensus 173 ~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~ 213 (291)
.| ..||++++|+|.++.+.+.-|. ......|..+.+..
T Consensus 224 ~~-~~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~ 261 (355)
T COG2273 224 IP-QIPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYR 261 (355)
T ss_pred Cc-CCcceeEEeecccCccCCCccc--cccCCcceEeeeee
Confidence 58 9999999999999866644332 33333444444433
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.82 E-value=6.2e-21 Score=134.46 Aligned_cols=47 Identities=51% Similarity=1.138 Sum_probs=40.0
Q ss_pred ccCcCcCccCcccCCHHHHHHHHHHhhcCeeeecCcCCCCCCCC-CCCc
Q 022821 239 EKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAI-PTEC 286 (291)
Q Consensus 239 ~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-p~ec 286 (291)
++..||+++.++ |+++|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 4 ~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 4 SSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 456799998888 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.54 E-value=9e-14 Score=137.44 Aligned_cols=172 Identities=21% Similarity=0.391 Sum_probs=116.6
Q ss_pred EecCCeEEEEEeCC-------CcceEEEcc--eeeeceEEEEEEeeCC-CCCceEEEEEeccC-----------C-----
Q 022821 39 QYDGDTLKLNLDNY-------SGAGFASKS--KYLFGKVSIQIKLVGG-DSAGTVTAFYMSSD-----------G----- 92 (291)
Q Consensus 39 ~~~g~~l~L~ld~~-------sgs~i~Sk~--~f~YG~~eariKl~~g-~s~G~v~AFwl~s~-----------~----- 92 (291)
+-.++.|+|++++. .++.++|-. -|+-|++|++++||.. +..|+|||||++++ +
T Consensus 164 tt~~G~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g~WPyS 243 (504)
T PF03935_consen 164 TTENGSLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDGMWPYS 243 (504)
T ss_pred EeeCCEEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCceeccc
Confidence 33466799999863 356777754 4688999999999853 45799999999874 0
Q ss_pred ---------C---------------------------------CCCceEE-EEcCCCC-CCCc---eEEee---------
Q 022821 93 ---------P---------------------------------NHNEFDF-EFLGNTT-GEPY---LVQTN--------- 116 (291)
Q Consensus 93 ---------~---------------------------------~~~EIDi-E~lGn~~-g~p~---~~qtN--------- 116 (291)
+ ...|||| |-..... +.+. .+|..
T Consensus 244 Yd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~~y~~~ 323 (504)
T PF03935_consen 244 YDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDIWYRPD 323 (504)
T ss_pred ccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccccCCCCC
Confidence 0 1259997 8654321 1111 12221
Q ss_pred -----EEeCCC-------CCccee-E----ec---CC--CCCCCcEEEEEEEccc-----eEEEEEcCeeEEEEeccCC-
Q 022821 117 -----VYVNGV-------GNREQR-L----DL---WF--DPTKEFHTYSLLWNQR-----QVVFLVDETPIRVHTNLEH- 168 (291)
Q Consensus 117 -----~~~~g~-------g~re~~-~----~l---~f--dps~dfHtY~i~Wtp~-----~I~fyVDG~~vr~~~~~~~- 168 (291)
+|.... |+.-|+ + .+ ++ ....+||+|++||.|. .|+|+|||+++.++....-
T Consensus 324 ~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~ 403 (504)
T PF03935_consen 324 YDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALG 403 (504)
T ss_pred CCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcC
Confidence 110000 011111 1 11 12 1237899999999874 8999999999999976431
Q ss_pred -C----CCCCCCCCceeEEEeeccCCCcccCCCcccccCCC--ccEEEEEeEEEEE
Q 022821 169 -K----GIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSH--APFIASYKGFDID 217 (291)
Q Consensus 169 -~----g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~--~Pf~a~~~~v~v~ 217 (291)
. ....| .-||+|++||....+|+ .+||.+ .|.+|.||+|||+
T Consensus 404 ~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVY 452 (504)
T PF03935_consen 404 PNPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVY 452 (504)
T ss_pred CCCCcCccccC-cCCceeeeccccccccC------ccccccccccceEEEeEEEEe
Confidence 1 14688 99999999999999998 378764 8999999999998
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.39 E-value=5.2e-12 Score=118.00 Aligned_cols=141 Identities=23% Similarity=0.308 Sum_probs=95.0
Q ss_pred CeEEEEEeCC---------CcceEEEcceeeeceEEEEE-EeeCCCCCceEEEEEeccCC-CCCCceEE-EEcCCCCCCC
Q 022821 43 DTLKLNLDNY---------SGAGFASKSKYLFGKVSIQI-KLVGGDSAGTVTAFYMSSDG-PNHNEFDF-EFLGNTTGEP 110 (291)
Q Consensus 43 ~~l~L~ld~~---------sgs~i~Sk~~f~YG~~eari-Kl~~g~s~G~v~AFwl~s~~-~~~~EIDi-E~lGn~~g~p 110 (291)
+.|.|..|+. ++++|.||.+|.+|++|+|+ |||.+ .|+||||||++.+ |..+|||| |.++...
T Consensus 49 g~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~--- 123 (293)
T cd02181 49 GNVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQT--- 123 (293)
T ss_pred CeEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCC---
Confidence 5688888753 25789999999999999997 99987 8999999999886 78899998 9997532
Q ss_pred ceEEeeEEeCCC----------C-------------CcceeEe--------cCCCCCCCcEEEEEEEccceEEEEE---c
Q 022821 111 YLVQTNVYVNGV----------G-------------NREQRLD--------LWFDPTKEFHTYSLLWNQRQVVFLV---D 156 (291)
Q Consensus 111 ~~~qtN~~~~g~----------g-------------~re~~~~--------l~fdps~dfHtY~i~Wtp~~I~fyV---D 156 (291)
..+..+|+.+. + +.+..+. ..|+ ..+=-.|++||+.+.|+.+. +
T Consensus 124 -~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~ 201 (293)
T cd02181 124 -SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRG 201 (293)
T ss_pred -ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCC
Confidence 23333443210 0 0011111 1121 34567999999999987665 2
Q ss_pred CeeEEEEeccCC-------CCCCCCCC---------CceeEEEeeccCCCcc
Q 022821 157 ETPIRVHTNLEH-------KGIPFPKD---------QAMGVYSSIWNADDWA 192 (291)
Q Consensus 157 G~~vr~~~~~~~-------~g~~~P~~---------~Pm~l~lnlW~gg~Wa 192 (291)
.+|- .++.... +-..|| . ++++|++|+-.=|+||
T Consensus 202 ~iP~-di~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 202 SIPA-DITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CCCc-ccccCCCCCcccCcccccCC-CCCCChhHhcccCEEEEEeecccccc
Confidence 2222 1111111 113466 4 8999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=95.32 E-value=0.3 Score=43.30 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=55.5
Q ss_pred EEEEeCCCcceEEEcce---eeec-eEEEEEEeeCCCCCceEEEEEeccCCCCCCceEEEEcCCCCCCCceEEeeEEeCC
Q 022821 46 KLNLDNYSGAGFASKSK---YLFG-KVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNG 121 (291)
Q Consensus 46 ~L~ld~~sgs~i~Sk~~---f~YG-~~eariKl~~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtN~~~~g 121 (291)
.+.+.-..|+++.|++. -.+| +....||+..| |..+-.+.-+.. .-=++|-.-. .|+ +-.++ +|
T Consensus 10 ~~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~~--r~l~~lsvn~--sG~---LvA~L--~g 77 (198)
T PF09264_consen 10 SWQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGSK--RYLPILSVNE--SGS---LVAEL--EG 77 (198)
T ss_dssp -EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESSE--EEEEEEEE-T--TS----EEEEE--TT
T ss_pred eEEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCce--EEEEEEEEcC--CCC---EEEEE--ec
Confidence 44455578899988763 3577 68899999876 444444432221 1111111111 111 11111 12
Q ss_pred CCCcceeEecCCCCCCCcEEEEEEEcc--ceEEEEEcCeeEEEEe
Q 022821 122 VGNREQRLDLWFDPTKEFHTYSLLWNQ--RQVVFLVDETPIRVHT 164 (291)
Q Consensus 122 ~g~re~~~~l~fdps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 164 (291)
.+.+ ..+.+....-.+||.|.|.-.| ..-.|||||++|++..
T Consensus 78 ~ss~-~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 78 QSSN-TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp S-S--EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred CCCc-EEEecccccccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 1111 1122211112579999999987 8999999999999853
No 19
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=93.97 E-value=3 Score=35.35 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=55.5
Q ss_pred CcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEeccC--C-----CCCCceEEEEcCCCCCCCceEEeeEEeCCCCC-
Q 022821 53 SGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSD--G-----PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN- 124 (291)
Q Consensus 53 sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s~--~-----~~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~- 124 (291)
.++-+.++..|.=..+++.+|+.++ | -.++++... . ...-|+.|.--+.....+ ...|.--
T Consensus 42 ~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~~-------~~~G~~~~ 110 (185)
T PF06439_consen 42 GGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGLP-------NSTGSLYD 110 (185)
T ss_dssp SS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTTT-------TSTTSBTT
T ss_pred CcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCCC-------CccceEEE
Confidence 4567888887777788999998543 2 334444433 1 234455553221110000 0001000
Q ss_pred c---ceeEec-CCCCCCCcEEEEEEEccceEEEEEcCeeEEEEecc
Q 022821 125 R---EQRLDL-WFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNL 166 (291)
Q Consensus 125 r---e~~~~l-~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 166 (291)
. ...... ...+..+||++.|.-..++|+.+|||++|.++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 111 EPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred eccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 000001 11356799999999999999999999999998864
No 20
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.37 E-value=2.3 Score=33.87 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEE
Q 022821 135 PTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGF 214 (291)
Q Consensus 135 ps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v 214 (291)
+...||..++.|....+++||||+.+.+...... ....+ ..+..| |+. .....+|...+++|
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~-~~~~~i-------------G~~---~~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNS-NGPLFI-------------GGS---GGGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTS-CCEEEE-------------SS----STT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCC-cceEEE-------------eec---CCCCCceEEEEEEE
Confidence 3588999999999999999999998865432211 00111 222211 221 12356999999999
Q ss_pred EEE
Q 022821 215 DID 217 (291)
Q Consensus 215 ~v~ 217 (291)
+|.
T Consensus 145 ~i~ 147 (157)
T PF13385_consen 145 RIY 147 (157)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=91.12 E-value=4.3 Score=35.28 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=51.1
Q ss_pred EEEEEEeeCCCCCceEEEEEeccCCCCCCceEEEEcCCCCCCCceEEeeEEeCCCCCcceeEecC-CC-CCCCcEEEEEE
Q 022821 68 VSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLW-FD-PTKEFHTYSLL 145 (291)
Q Consensus 68 ~eariKl~~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~-fd-ps~dfHtY~i~ 145 (291)
+.+.+|..+. +.|++-++.-. + ...++-++.-|.. ..+. ++..+..+..+..... .+ ....||..++.
T Consensus 56 i~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~~----~~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal~ 125 (184)
T smart00210 56 LLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGRA----NTLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLALS 125 (184)
T ss_pred EEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCCc----cEEE--EEECCCCCcEEEEeecCCccccCCceEEEEE
Confidence 6677777643 35666555432 1 2445555655532 1233 3332332322222211 12 24679999999
Q ss_pred EccceEEEEEcCeeEEEEe
Q 022821 146 WNQRQVVFLVDETPIRVHT 164 (291)
Q Consensus 146 Wtp~~I~fyVDG~~vr~~~ 164 (291)
+..+++++|||++++.+..
T Consensus 126 V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 126 VSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EeCCEEEEEECCcccccee
Confidence 9999999999999997764
No 22
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=91.00 E-value=7.6 Score=31.72 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=44.8
Q ss_pred CCCCcEEEEEEEcc--ceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEe
Q 022821 135 PTKEFHTYSLLWNQ--RQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYK 212 (291)
Q Consensus 135 ps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~ 212 (291)
+...||...+.++. .+|++||||+++.+.... +.+...|+.+-.....+ + ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~~-------~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILLG-------G-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccCC-------C-----CCCCCceEEee
Confidence 44789999999988 799999999998654321 11213343332111111 1 12348889999
Q ss_pred EEEEEeecC
Q 022821 213 GFDIDACEC 221 (291)
Q Consensus 213 ~v~v~~C~~ 221 (291)
.|+|..++-
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999986653
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=84.13 E-value=4.6 Score=37.09 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=48.4
Q ss_pred EEEEEEeeCCC-----CCceEEEEEeccCC----------------CCCCceEE-EEcCCCCCCCceEEeeEEe-CCCC-
Q 022821 68 VSIQIKLVGGD-----SAGTVTAFYMSSDG----------------PNHNEFDF-EFLGNTTGEPYLVQTNVYV-NGVG- 123 (291)
Q Consensus 68 ~eariKl~~g~-----s~G~v~AFwl~s~~----------------~~~~EIDi-E~lGn~~g~p~~~qtN~~~-~g~g- 123 (291)
|-.+.++|... ...=.||+||++.. ..++|+|| |.|... +. .+.+.+|. +|..
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCccc
Confidence 67777888721 13457999999762 25899998 999753 33 56666665 4421
Q ss_pred -----CcceeEecCCCCCCCcEEEEEEEccc
Q 022821 124 -----NREQRLDLWFDPTKEFHTYSLLWNQR 149 (291)
Q Consensus 124 -----~re~~~~l~fdps~dfHtY~i~Wtp~ 149 (291)
+....+ -.|++..-++++.++.+
T Consensus 180 ~~~g~G~~~yf---~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSDYF---KRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCCcc---cCCCCCCeEEEEEEcCC
Confidence 111111 13777888899888654
No 24
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=77.98 E-value=34 Score=27.42 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=48.7
Q ss_pred eeceEEEEEEeeCCCCCceEEEEEeccCCCCCCceEEEEcCCCCCCCceEEeeEEeCCCCCcceeEecCC-CCCCCcEEE
Q 022821 64 LFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWF-DPTKEFHTY 142 (291)
Q Consensus 64 ~YG~~eariKl~~g~s~G~v~AFwl~s~~~~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l~f-dps~dfHtY 142 (291)
....+++++|.... .|++ |++.+. ...+-+-+|... | .+...+-. | .....+.... =....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 45567777777654 5654 333332 135556666653 2 23332222 2 2222222211 124579999
Q ss_pred EEEEccceEEEEEcCeeEEEE
Q 022821 143 SLLWNQRQVVFLVDETPIRVH 163 (291)
Q Consensus 143 ~i~Wtp~~I~fyVDG~~vr~~ 163 (291)
.|.+..+.++.+|||.++.+.
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEECCCEEEEEECCccEEee
Confidence 999999999999999854443
No 25
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=73.37 E-value=14 Score=33.65 Aligned_cols=59 Identities=22% Similarity=0.412 Sum_probs=39.2
Q ss_pred CCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCC-ccEEEEEeEEE
Q 022821 137 KEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSH-APFIASYKGFD 215 (291)
Q Consensus 137 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~-~Pf~a~~~~v~ 215 (291)
..|+.-.|.=....|.|.|||.+|..++.... ...|- -.+|+ |-..+ +|..|.|++++
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~ 217 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------------LRGGR--IGFRQMAPLVARYRNLE 217 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBE--EEEEEETT-EEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------------ccCcE--eeeeccchhhhhhcccc
Confidence 36777788889999999999999999975432 11230 11464 54555 79999999998
Q ss_pred E
Q 022821 216 I 216 (291)
Q Consensus 216 v 216 (291)
|
T Consensus 218 V 218 (218)
T PF09224_consen 218 V 218 (218)
T ss_dssp E
T ss_pred C
Confidence 6
No 26
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=72.32 E-value=65 Score=28.33 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=45.4
Q ss_pred ecCCCCCCCcEEEEE--EEcc---ceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCC
Q 022821 130 DLWFDPTKEFHTYSL--LWNQ---RQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSH 204 (291)
Q Consensus 130 ~l~fdps~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~ 204 (291)
.+...+...||.+.| .|.+ ..|..++||++|..++... -++..+..++-+.|.-.+ |.+..+. .+.
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~~--~~~-- 215 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPNE--SDT-- 215 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC----SS--
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCcc--ccc--
Confidence 333334588999866 5775 7799999999998887622 333136778888887643 2211111 111
Q ss_pred ccEEEEEeEEEE
Q 022821 205 APFIASYKGFDI 216 (291)
Q Consensus 205 ~Pf~a~~~~v~v 216 (291)
.++||+|++
T Consensus 216 ---~vy~D~v~~ 224 (224)
T PF14099_consen 216 ---QVYYDNVRI 224 (224)
T ss_dssp ----EEEEEEE-
T ss_pred ---EEEeccccC
Confidence 188999875
No 27
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=67.34 E-value=41 Score=29.50 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEc--cceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEe
Q 022821 135 PTKEFHTYSLLWN--QRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYK 212 (291)
Q Consensus 135 ps~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~ 212 (291)
....||...+.|+ ..++.+||||+++..-. -..+..++ . ...+.+.-- --..||. .+. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~-~-~g~l~lG~~----q~~~gg~--~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVG-P-GGSIILGQE----QDSYGGG--FDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEEC-C-CCeEEEeec----ccCCCCC--CCC-CcceEEEEc
Confidence 4678999999998 45799999999875432 11122333 1 222333211 0111342 343 347888888
Q ss_pred EEEEE
Q 022821 213 GFDID 217 (291)
Q Consensus 213 ~v~v~ 217 (291)
+|+|.
T Consensus 157 ~v~iw 161 (201)
T cd00152 157 DVNMW 161 (201)
T ss_pred eeEEE
Confidence 88886
No 28
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=58.63 E-value=1.3e+02 Score=26.50 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEEc--cceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEe
Q 022821 135 PTKEFHTYSLLWN--QRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYK 212 (291)
Q Consensus 135 ps~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~ 212 (291)
....||...+.|+ ..++.+||||+++.. . .-..+..++ .+-.+.+.- .-+.+ ||. .+. ...|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~--~~G~lvlGq-~qd~~---gg~--f~~-~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVK--PGGSIILGQ-EQDSY---GGG--FDA-TQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEEC--CCCEEEEEe-cccCC---CCC--CCC-CcceeEEEe
Confidence 3568999999997 457999999998621 1 111122332 222333333 11222 332 443 346888888
Q ss_pred EEEEE
Q 022821 213 GFDID 217 (291)
Q Consensus 213 ~v~v~ 217 (291)
+|+|.
T Consensus 157 ~v~iw 161 (206)
T smart00159 157 DLNMW 161 (206)
T ss_pred eeEEe
Confidence 88886
No 29
>smart00282 LamG Laminin G domain.
Probab=46.29 E-value=82 Score=24.98 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEccceEEEEEcCeeEEEE
Q 022821 136 TKEFHTYSLLWNQRQVVFLVDETPIRVH 163 (291)
Q Consensus 136 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 163 (291)
...||.-.|.-..+.++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 3579999999999999999999765443
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=43.65 E-value=2.4e+02 Score=25.15 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=65.6
Q ss_pred eeeeceEEEEEEeeCCCCCceEEEEEeccCCC----------CCCceEEEEcCCCCCCCceEEeeEEeCCCCCcceeEec
Q 022821 62 KYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGP----------NHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDL 131 (291)
Q Consensus 62 ~f~YG~~eariKl~~g~s~G~v~AFwl~s~~~----------~~~EIDiE~lGn~~g~p~~~qtN~~~~g~g~re~~~~l 131 (291)
...-|.+-++.|.... + -+-|++-.+++. ..+++=+|+.+...+.-+...+.+-..+ .
T Consensus 31 ~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~-----~---- 98 (190)
T PF02973_consen 31 KLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG-----G---- 98 (190)
T ss_dssp T-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S-----E----
T ss_pred cccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc-----c----
Confidence 3456777788886443 3 345676666541 1226667777765332222222110000 0
Q ss_pred CCCCCCCcEEEEEEEc--cceEEEEEcCeeEEEEeccCCCCCCCCCCC--ceeEEEeeccCCCcccCCCcccccCCCccE
Q 022821 132 WFDPTKEFHTYSLLWN--QRQVVFLVDETPIRVHTNLEHKGIPFPKDQ--AMGVYSSIWNADDWATQGGRVKTDWSHAPF 207 (291)
Q Consensus 132 ~fdps~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~--Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf 207 (291)
.-....||+=++.=. ..+.++|+||..+.++.... ..|-.+- +=.+. -||...-.-...||
T Consensus 99 -~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~-----------iG~t~R~g~~~y~f 163 (190)
T PF02973_consen 99 -YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQ-----------IGGTNRAGSNAYPF 163 (190)
T ss_dssp -ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEE-----------ESSEEETTEEES--
T ss_pred -ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEE-----------EcceEeCCCceecc
Confidence 002345888877775 67899999999888876432 1221111 11111 13321111124599
Q ss_pred EEEEeEEEEEeec
Q 022821 208 IASYKGFDIDACE 220 (291)
Q Consensus 208 ~a~~~~v~v~~C~ 220 (291)
.-.|++++|.-++
T Consensus 164 ~G~I~~l~iYn~a 176 (190)
T PF02973_consen 164 NGTIDNLKIYNRA 176 (190)
T ss_dssp EEEEEEEEEESS-
T ss_pred cceEEEEEEEcCc
Confidence 9999999998443
No 31
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=43.26 E-value=1.5e+02 Score=22.64 Aligned_cols=74 Identities=9% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcccCCCcccccCCCccEEEEEeEEE
Q 022821 136 TKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIASYKGFD 215 (291)
Q Consensus 136 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~id~~~~Pf~a~~~~v~ 215 (291)
...||.-.|.=....++..||+............ ..-+...-.++.||.-...... ..-....|.--+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~------~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS------SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT------HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc------eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEE
Confidence 4679999999999999999999998877643211 0012233346666543311110 0001556777777777
Q ss_pred EE
Q 022821 216 ID 217 (291)
Q Consensus 216 v~ 217 (291)
|+
T Consensus 125 vn 126 (128)
T PF02210_consen 125 VN 126 (128)
T ss_dssp ET
T ss_pred EC
Confidence 64
No 32
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.03 E-value=1.8e+02 Score=26.36 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=41.4
Q ss_pred eEEEEEeCCCcceEEEcceeeeceEEEEEEeeCCCCCceEEEEEecc-CC--C-CCCceEEEEcC
Q 022821 44 TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DG--P-NHNEFDFEFLG 104 (291)
Q Consensus 44 ~l~L~ld~~sgs~i~Sk~~f~YG~~eariKl~~g~s~G~v~AFwl~s-~~--~-~~~EIDiE~lG 104 (291)
.+.+.+..+.|..+.++..+.-|+|...+.- .|+.-+-|..- .+ | ...+||++|--
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~ 120 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWKT 120 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEeec
Confidence 4777788889999999999999999887754 46666666652 11 3 34889998853
No 33
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=36.71 E-value=35 Score=36.08 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCcEEEEEEEccceEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeeccCCCcc
Q 022821 136 TKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWA 192 (291)
Q Consensus 136 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wa 192 (291)
.++||.|.+.-.=-.++.||||+-..-..-. ..|| -.|.++-..|=+|.=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCc-cCcccccceeEEeeecc
Confidence 4689999999976669999999865322111 3677 67777777776777787
No 34
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=34.09 E-value=31 Score=25.68 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=17.1
Q ss_pred CchhhHHHHHHHHH-HHHHHhc--cccccccccceecC
Q 022821 1 MAKMSLIFSLFVGL-LMVVLVS--SAKFDDLYQTSWAF 35 (291)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~w~~ 35 (291)
|-.+++.|+|+++| .++++-+ +.-++-++...|--
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSdag~~y~p~y~~~~~y 38 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDAGYYYYPGYNAPRRY 38 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecCccccCCCCCCCccc
Confidence 56677665555544 3333322 33345555555533
No 35
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=30.89 E-value=30 Score=31.75 Aligned_cols=24 Identities=13% Similarity=0.551 Sum_probs=15.2
Q ss_pred ccCcCcCccCcccCCHHHHHHHHHH
Q 022821 239 EKRFWWDEPTLSELNVHQSHQLMWV 263 (291)
Q Consensus 239 ~~~~w~~~~~~~~l~~~~~~~~~~~ 263 (291)
.+++|||+..|-+ .+.-.++++|+
T Consensus 204 CPSYWWN~ekYLG-PAvLmqAyRWi 227 (288)
T KOG3049|consen 204 CPSYWWNSEKYLG-PAVLMQAYRWI 227 (288)
T ss_pred CcccccCcccccC-HHHHHHHHhhh
Confidence 4678999986644 12345567775
No 36
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=28.56 E-value=1.4e+02 Score=24.00 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=33.7
Q ss_pred eEEeCCCCCcceeEe-cCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEec
Q 022821 116 NVYVNGVGNREQRLD-LWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTN 165 (291)
Q Consensus 116 N~~~~g~g~re~~~~-l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 165 (291)
|.+.+|.-++|++.. .+|.+. ...+-.|.=+++....+|||+++..+..
T Consensus 56 Ns~~~g~Wg~Eer~~~~pf~~g-~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 56 NSFLNGNWGPEERSGGFPFQPG-QPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred cCCCCCEecHhhccCCCCCCCC-CeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 333344445566653 444443 4458889999999999999999988863
No 37
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=26.47 E-value=1e+02 Score=24.69 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=24.2
Q ss_pred CCCCcEEEEEEEccceEEEEEcCeeEEEEe
Q 022821 135 PTKEFHTYSLLWNQRQVVFLVDETPIRVHT 164 (291)
Q Consensus 135 ps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 164 (291)
+.++-|++.+. ..+..+++|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 57788999888 888999999999995544
No 38
>PRK02710 plastocyanin; Provisional
Probab=25.17 E-value=1.6e+02 Score=23.71 Aligned_cols=14 Identities=21% Similarity=-0.045 Sum_probs=6.9
Q ss_pred CchhhHHHHHHHHH
Q 022821 1 MAKMSLIFSLFVGL 14 (291)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (291)
|++..+++++++++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (119)
T PRK02710 1 MAKRLRSIAAALVA 14 (119)
T ss_pred CchhHHHHHHHHHH
Confidence 56655544444443
No 39
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=24.48 E-value=87 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=21.8
Q ss_pred eEEEEEcCeeEEEEeccCCCCCCCCCCCceeEEEeecc
Q 022821 150 QVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWN 187 (291)
Q Consensus 150 ~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ 187 (291)
.+.|||||+++.+-.... ...++...|-.-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEEc
Confidence 788999999996554322 123332356666666633
No 40
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=23.12 E-value=1.5e+02 Score=25.73 Aligned_cols=38 Identities=16% Similarity=0.405 Sum_probs=29.2
Q ss_pred cceeEecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEE
Q 022821 125 REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVH 163 (291)
Q Consensus 125 re~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 163 (291)
+..++++|- .+.|=|.|+|.-..+.+..+++|..+++-
T Consensus 91 ~~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 91 MTKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhhheeEEE-EecCCceEEEEEeccceeeEEcCcccccc
Confidence 344566653 33445999999999999999999998874
No 41
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=21.38 E-value=2.9e+02 Score=22.13 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=33.5
Q ss_pred eeEEeCCCCCccee-EecCCCCCCCcEEEEEEEccceEEEEEcCeeEEEEec
Q 022821 115 TNVYVNGVGNREQR-LDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTN 165 (291)
Q Consensus 115 tN~~~~g~g~re~~-~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 165 (291)
-|.+.+|.-+.|++ ...+|.+... -+-.|.=+++....+|||+.+..+..
T Consensus 60 ~Ns~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~~~~~F~~ 110 (133)
T PF00337_consen 60 RNSRINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGKHFCSFPH 110 (133)
T ss_dssp EEEEETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTEEEEEEE-
T ss_pred EeceECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCeEEEEeeC
Confidence 34444554455666 3344544444 47778889999999999999999874
Done!