Query 022823
Match_columns 291
No_of_seqs 180 out of 1254
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 2.1E-46 4.5E-51 340.9 16.3 211 11-280 3-213 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 7E-21 1.5E-25 148.0 5.5 86 16-104 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 9.8E-20 2.1E-24 141.5 7.2 87 137-279 1-87 (87)
4 KOG1623 Multitransmembrane pro 99.4 1E-13 2.2E-18 127.0 4.8 94 10-106 121-214 (243)
5 COG4095 Uncharacterized conser 99.1 3.2E-10 6.9E-15 88.5 8.0 84 12-101 3-86 (89)
6 COG4095 Uncharacterized conser 98.9 3.7E-09 8.1E-14 82.5 6.0 60 136-198 5-64 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.2 8.3E-05 1.8E-09 67.7 17.1 167 14-190 4-190 (220)
8 PF04193 PQ-loop: PQ loop repe 97.8 6.9E-05 1.5E-09 54.1 6.1 56 15-75 3-58 (61)
9 PF04193 PQ-loop: PQ loop repe 97.6 0.00019 4.1E-09 51.8 5.8 57 137-196 3-59 (61)
10 PRK01021 lpxB lipid-A-disaccha 95.8 0.41 8.9E-06 49.9 16.3 207 8-287 4-229 (608)
11 KOG3211 Predicted endoplasmic 95.5 0.16 3.4E-06 46.2 10.2 170 13-198 30-202 (230)
12 KOG2913 Predicted membrane pro 95.2 0.34 7.5E-06 45.4 12.2 54 19-74 11-64 (260)
13 smart00679 CTNS Repeated motif 92.7 0.11 2.5E-06 32.4 2.6 28 31-58 2-29 (32)
14 TIGR00951 2A43 Lysosomal Cysti 89.5 0.86 1.9E-05 41.5 6.0 49 137-188 5-53 (220)
15 PHA02246 hypothetical protein 88.0 17 0.00038 31.9 12.5 138 23-179 11-149 (192)
16 smart00679 CTNS Repeated motif 85.2 0.87 1.9E-05 28.3 2.4 28 153-180 2-29 (32)
17 PF03650 MPC: Uncharacterised 85.1 0.3 6.5E-06 40.7 0.3 62 42-104 39-100 (119)
18 KOG1589 Uncharacterized conser 83.0 0.71 1.5E-05 37.9 1.6 60 42-102 43-102 (118)
19 PF10688 Imp-YgjV: Bacterial i 82.2 22 0.00047 30.9 10.7 137 13-198 4-140 (163)
20 PHA02246 hypothetical protein 76.5 16 0.00035 32.1 7.9 59 27-87 119-177 (192)
21 PF03650 MPC: Uncharacterised 75.7 0.73 1.6E-05 38.4 -0.5 81 141-282 21-103 (119)
22 KOG3211 Predicted endoplasmic 54.6 24 0.00051 32.4 4.8 70 29-100 154-223 (230)
23 PRK05771 V-type ATP synthase s 49.0 3.4E+02 0.0073 28.4 13.4 52 29-93 325-376 (646)
24 PF10688 Imp-YgjV: Bacterial i 38.2 21 0.00046 30.9 1.9 36 54-92 118-153 (163)
25 KOG2913 Predicted membrane pro 37.2 23 0.0005 33.3 2.1 45 20-67 169-213 (260)
26 PF05602 CLPTM1: Cleft lip and 34.0 90 0.0019 31.2 5.8 69 21-92 306-375 (438)
27 KOG1589 Uncharacterized conser 33.7 9.4 0.0002 31.5 -0.9 35 164-198 43-79 (118)
28 KOG2532 Permease of the major 27.4 1.9E+02 0.0041 29.2 6.9 176 13-191 261-446 (466)
29 KOG4314 Predicted carbohydrate 26.1 1.3E+02 0.0028 27.8 4.9 53 130-182 126-178 (290)
30 KOG2489 Transmembrane protein 25.4 5.4E+02 0.012 26.9 9.5 157 25-185 329-515 (592)
31 PF07578 LAB_N: Lipid A Biosyn 24.4 1.4E+02 0.0031 22.7 4.1 52 33-88 14-65 (72)
32 COG3952 Predicted membrane pro 24.3 49 0.0011 27.2 1.6 37 162-198 48-84 (113)
33 KOG3145 Cystine transporter Cy 21.7 6.2E+02 0.014 24.8 8.7 37 13-52 123-159 (372)
34 TIGR01809 Shik-DH-AROM shikima 21.1 1.1E+02 0.0023 28.6 3.5 43 218-273 225-270 (282)
35 KOG3646 Acetylcholine receptor 20.9 3.5E+02 0.0077 27.7 7.2 80 130-238 259-338 (486)
36 PF07578 LAB_N: Lipid A Biosyn 20.9 81 0.0018 24.1 2.1 36 163-198 21-56 (72)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=2.1e-46 Score=340.93 Aligned_cols=211 Identities=44% Similarity=0.745 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHH
Q 022823 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQL 90 (291)
Q Consensus 11 ~~~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~ 90 (291)
+...+.+|..|.++++++|++|+|+++||+|+||+|++|..||+++.+||.+|+.|| ++.+|+..++.+|++|+++++
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999 666634589999999999999
Q ss_pred HHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCcccc
Q 022823 91 VYIILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFM 170 (291)
Q Consensus 91 ~yl~vf~~y~~~k~r~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~m 170 (291)
+|+..|+.|+++|++.+..... .+.++...+++.....++++.+.+.+|.+|.+++++||+|||..+|+||||||+|+|
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~m 159 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIVLAL-VLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYM 159 (243)
T ss_pred HHHHHHheecCchheeEeeehH-HHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeee
Confidence 9999999999988844322111 111222222344455667777899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcccCCceeEeeccccccchhhheeceeeeeEEeecccccchhhHHhhhhcccCccceeehh
Q 022823 171 PFYLSLSTFLMSTSFLAYGIMNWDPFIYVWFLLPSHFSLLILFGVCFFFCFMLYNIQTVSLQSLLLQKKVICPLVTITFL 250 (291)
Q Consensus 171 p~~l~l~~~ln~~lW~~YGll~~D~fI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
|++++++.++++.+|++||++++|.|+.
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli~D~~Ia---------------------------------------------------- 187 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLIKDFFIA---------------------------------------------------- 187 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCeEEE----------------------------------------------------
Confidence 9999999999999999999999999999
Q ss_pred hhcccCchhHHHHHHHHhhheeeecCCCCC
Q 022823 251 LKFQVPNGIGTILGIVQLALYFNYKETSGE 280 (291)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (291)
+||++|.++|++||.||+.||+++.+
T Consensus 188 ----ipN~iG~~l~~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 188 ----IPNVLGFLLGLIQLILYFKYPKTTEK 213 (243)
T ss_pred ----cccHHHHHHHHHHHHHhhhcCCCccc
Confidence 99999999999999999999987744
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.82 E-value=7e-21 Score=147.97 Aligned_cols=86 Identities=27% Similarity=0.619 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHHHHH
Q 022823 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 95 (291)
Q Consensus 16 ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~yl~v 95 (291)
++|.+|.+++++|++||+|+++|++|+||+|++|+.|++++++||.+|+.|| ++.+|+ +++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d~-~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILINDW-PIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCCe-eEEeeHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999999 888886 9999999999999999999
Q ss_pred hhhccchhh
Q 022823 96 FITYTEKDK 104 (291)
Q Consensus 96 f~~y~~~k~ 104 (291)
|++|+++||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.80 E-value=9.8e-20 Score=141.52 Aligned_cols=87 Identities=37% Similarity=0.518 Sum_probs=83.9
Q ss_pred hhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhcccCCceeEeeccccccchhhheecee
Q 022823 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVWFLLPSHFSLLILFGVC 216 (291)
Q Consensus 137 ~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~fI~~~~~~~~~~~~~~~~~~~ 216 (291)
+++|.+|++.++++|+||++++++++|+||++++|..+.+++++||.+|+.||++++|.+++
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~------------------ 62 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPII------------------ 62 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEE------------------
Confidence 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHHHHHhhheeeecCCCC
Q 022823 217 FFFCFMLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILGIVQLALYFNYKETSG 279 (291)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (291)
+||.+|.+++..|+.+|+.|+++++
T Consensus 63 --------------------------------------~~N~~g~~~~~~~~~~~~~y~~~~~ 87 (87)
T PF03083_consen 63 --------------------------------------VPNVFGLVLSIIYLVVYYIYPSKKK 87 (87)
T ss_pred --------------------------------------eeHHHHHHHHHHHHhheEEeCCCCC
Confidence 9999999999999999999998763
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.43 E-value=1e-13 Score=127.02 Aligned_cols=94 Identities=22% Similarity=0.435 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHH
Q 022823 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (291)
Q Consensus 10 ~~~~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~ 89 (291)
.+...+.+|.+|.+++++||.||+..+++++|+||+|.+++....+.++++..|+.|| ++.+| +.+.++|.+|.+++
T Consensus 121 ~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYG--lli~D-~~IaipN~iG~~l~ 197 (243)
T KOG1623|consen 121 PERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYG--LLIKD-FFIAIPNVLGFLLG 197 (243)
T ss_pred cceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHH--HHhcC-eEEEcccHHHHHHH
Confidence 3445778999999999999999999999999999999999999999999999999999 78867 58899999999999
Q ss_pred HHHHHHhhhccchhhHH
Q 022823 90 LVYIILFITYTEKDKKV 106 (291)
Q Consensus 90 ~~yl~vf~~y~~~k~r~ 106 (291)
..++.+|++|++++.+.
T Consensus 198 ~~QL~Ly~~y~~~~~~~ 214 (243)
T KOG1623|consen 198 LIQLILYFKYPKTTEKI 214 (243)
T ss_pred HHHHHHhhhcCCCcccc
Confidence 99999999998877543
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.2e-10 Score=88.48 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHH
Q 022823 12 VLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 91 (291)
Q Consensus 12 ~~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~ 91 (291)
...+.+|..|+..+..+| +||..+++|+|+++++|...++.....+.+|+.|| ++.+| .|+...|.++..++..
T Consensus 3 ~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 3 FFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred chhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHH
Confidence 346788998888888666 99999999999999999999999999999999999 89977 5999999999999998
Q ss_pred HHHHhhhccc
Q 022823 92 YIILFITYTE 101 (291)
Q Consensus 92 yl~vf~~y~~ 101 (291)
-+....+|..
T Consensus 77 Il~~kI~~~~ 86 (89)
T COG4095 77 ILFYKIKYIL 86 (89)
T ss_pred HHHHHHHHHH
Confidence 8877777643
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=3.7e-09 Score=82.51 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=56.7
Q ss_pred hhhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhcccCCceeE
Q 022823 136 QMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIY 198 (291)
Q Consensus 136 ~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~fI~ 198 (291)
.+.+|.+|+.++.++| ++|+-+++|+||++++++++........++|+.||++++|..+.
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii 64 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPII 64 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcch
Confidence 5678999999999999 67899999999999999999999999999999999999999988
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.25 E-value=8.3e-05 Score=67.66 Aligned_cols=167 Identities=11% Similarity=0.111 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH--------hhhhhccCCcEEEee----
Q 022823 14 KDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY--------GTPLVSADNILVTTV---- 81 (291)
Q Consensus 14 ~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~Y--------G~~ll~~d~~~Vi~~---- 81 (291)
...+|+...+... .+-+||+.+..|+||++++|+..+..-..+...|..| . . .++ ++.-..
T Consensus 4 S~~lG~~~~~~~~---~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~--~-~~~-~~~~~~~v~~ 76 (220)
T TIGR00951 4 SQILGWGYVAAWS---ISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWS--I-TNE-FPLSSPGVTQ 76 (220)
T ss_pred HHHHHHHHHHHHH---HHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchh--h-hhc-cccccCCCcH
Confidence 3456665555555 5669999999999999999999999999999999999 4 2 222 222211
Q ss_pred hhhh-----hHHHHHHHHHhhhccchhhHH-H-HHHHH-HHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhc
Q 022823 82 NSIG-----AAFQLVYIILFITYTEKDKKV-R-MLGLL-LAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFAS 153 (291)
Q Consensus 82 N~iG-----~~l~~~yl~vf~~y~~~k~r~-~-~~~~~-~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~S 153 (291)
|-+- .++...-..-+.+|.+..+|. + ..... ....+.++...........+.+....++.+-..+++.-|
T Consensus 77 edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~iky-- 154 (220)
T TIGR00951 77 NDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKY-- 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH--
Confidence 2222 222222222222333322222 1 11111 111111111111111122333444556666666666555
Q ss_pred hHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhc
Q 022823 154 PLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGI 190 (291)
Q Consensus 154 PL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGl 190 (291)
++|++...|.||++..|..-....+..++.=..-..
T Consensus 155 -iPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~ 190 (220)
T TIGR00951 155 -FPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSV 190 (220)
T ss_pred -hHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999998888888666555444
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=97.79 E-value=6.9e-05 Score=54.13 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCC
Q 022823 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN 75 (291)
Q Consensus 15 ~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~ 75 (291)
+++|+++.+ +...+.+||+++.+|+||++++|...+.....+..+|+.|. ++.+++
T Consensus 3 ~~~g~i~~~---~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIV---LWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYP 58 (61)
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 345555555 45577799999999999999999999999999999999999 666553
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.59 E-value=0.00019 Score=51.82 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=48.2
Q ss_pred hhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhcccCCce
Q 022823 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPF 196 (291)
Q Consensus 137 ~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~f 196 (291)
+.+|.++.++....+ ++|+.+..|+||++++++.+....++++++|++|.++.++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666666666555 779999999999999999999999999999999999887643
No 10
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.83 E-value=0.41 Score=49.85 Aligned_cols=207 Identities=14% Similarity=0.154 Sum_probs=114.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhH-HHHHHHHHHHHHHhhhhhccCCcEEEeehhhhh
Q 022823 8 QALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPY-VYALLNCLITMWYGTPLVSADNILVTTVNSIGA 86 (291)
Q Consensus 8 q~~~~~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~-v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~ 86 (291)
|........+|.+|-+.-.. --+-|-..-.|+| ++.-+.-| ...+.++.+=+.|| ++.+|. +++....+|.
T Consensus 4 ~~~~~~~~~~G~~~q~~F~~---rf~~QW~~sek~~--~s~~p~~FW~~Sl~g~~~l~~y~--~~~~~~-~~~~~q~~~~ 75 (608)
T PRK01021 4 QKLVLWLYPLGLFANLFFGS---AFCIQWFLSKKRK--YSYVPKIFWILSSIGAVLMICHG--FIQSQF-PIALLHSFNL 75 (608)
T ss_pred ccchHHHHHHHHHHHHHHHH---HHHHHHHHHHhcC--CccCchHHHHHHHHHHHHHHHHH--HHhcCC-cEEEecccce
Confidence 33445566677777654322 2233333333333 33333333 45688899999999 777674 7877676666
Q ss_pred HHHHHHHHHhhhccchhhHHHHHH--HHH-HHHHHHHH--HHHHhhhcc--------cc--ccch---hhhhhhHHHHHH
Q 022823 87 AFQLVYIILFITYTEKDKKVRMLG--LLL-AVIGIFSI--IVAVSLQIV--------NP--FSRQ---MFVGLLSCAALI 148 (291)
Q Consensus 87 ~l~~~yl~vf~~y~~~k~r~~~~~--~~~-~~~~i~si--~~~~~~~~~--------~~--~~~~---~~lG~ia~v~ti 148 (291)
++..=.+.+-.. .+.-.|... +++ .....+-+ ..+.+.... +. +... ..+|++|-++-.
T Consensus 76 ~iy~rNl~l~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~ 152 (608)
T PRK01021 76 IIYFRNLNIASS---RPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFS 152 (608)
T ss_pred EEEeehhhhccc---ccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHH
Confidence 543222222111 122122221 111 11111111 111111111 11 1111 355666655333
Q ss_pred HHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhcccCCceeEeeccccccchhhheeceeeeeEEeeccccc
Q 022823 149 SMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVWFLLPSHFSLLILFGVCFFFCFMLYNIQT 228 (291)
Q Consensus 149 ~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~fI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (291)
.=| ..=+-.-+++..+.+|...-..+++.+++=++|++..+|...+
T Consensus 153 ~Rf----~~Qw~~se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i------------------------------ 198 (608)
T PRK01021 153 LRF----FIQWFYLEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNI------------------------------ 198 (608)
T ss_pred HHH----HHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEE------------------------------
Confidence 222 2112223556667889999999999999999999999998877
Q ss_pred chhhHHhhhhcccCccceeehhhhcccCchhHHHHHHHHhhheeeecCCCCCCCCCCcc
Q 022823 229 VSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILGIVQLALYFNYKETSGEESRDPLI 287 (291)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (291)
+-.+.|.+.-+-.+ ++.++|++.++-.||++
T Consensus 199 --------------------------~g~~~g~~~y~rnl--~li~~~~~~~~~~~~kI 229 (608)
T PRK01021 199 --------------------------LCYGCGLFPSLANL--RIAYKEARRKPFSNTSC 229 (608)
T ss_pred --------------------------EccccchhHHHHHH--HHHHhhcccccccCCeE
Confidence 77889998877775 66777777776666653
No 11
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.46 E-value=0.16 Score=46.19 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHH
Q 022823 13 LKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 92 (291)
Q Consensus 13 ~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~y 92 (291)
....+|+.....++. --+||+.+|+..||++++|...+..-.++-..-+.|. .+++..+.-.--.+=+.++.+-
T Consensus 30 lsklLg~~~va~sl~---vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g~pFss~gE~~fLl~Q~vi 103 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLL---VKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSGYPFSSYGEYPFLLLQAVI 103 (230)
T ss_pred HHhhhhHHHHHHHHH---hhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcCCCchhHHHHHHHHHHHHH
Confidence 345556555555553 4599999999999999999999999999999999999 4545322222222223344433
Q ss_pred HHHhh-hccchhhHH-HHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCcccc
Q 022823 93 IILFI-TYTEKDKKV-RMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFM 170 (291)
Q Consensus 93 l~vf~-~y~~~k~r~-~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~m 170 (291)
+..+. .|+-..... ..+.. ++.+..... .......++-...+...-+.-.+-+.|+..-.|+|++..+
T Consensus 104 li~~if~f~~~~~~~v~~l~~-------~~~v~~~~~---sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgql 173 (230)
T KOG3211|consen 104 LILCIFHFSGQTVTVVQFLGY-------IALVVSVLA---SKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQL 173 (230)
T ss_pred HHHHHHHhccceeehhhHHHH-------HHHHHHHHH---HhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchh
Confidence 33332 233111110 11111 111111111 1112222333333333334447888999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhhccc-CCceeE
Q 022823 171 PFYLSLSTFLMSTSFLAYGIMN-WDPFIY 198 (291)
Q Consensus 171 p~~l~l~~~ln~~lW~~YGll~-~D~fI~ 198 (291)
++.-+..++-.++-=..+.+.. +|.-++
T Consensus 174 s~it~fLsf~g~lARiftsiq~t~d~~ml 202 (230)
T KOG3211|consen 174 SLITVFLSFGGCLARIFTSIQETGDFLML 202 (230)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcCChhhH
Confidence 9999999998888888888874 676555
No 12
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=95.25 E-value=0.34 Score=45.39 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccC
Q 022823 19 IAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD 74 (291)
Q Consensus 19 ~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d 74 (291)
.+|++.+++-..+=+||+.+..|+||.+++|+.+.+.-......=+.|. .+.+-
T Consensus 11 ~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~ 64 (260)
T KOG2913|consen 11 ILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL 64 (260)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc
Confidence 3444444455566699999999999999999999998888888888888 55543
No 13
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=92.75 E-value=0.11 Score=32.45 Aligned_cols=28 Identities=36% Similarity=0.301 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHhcCCCCccchhHHHHHH
Q 022823 31 SPVPTFRRIIRNHSTEEFSGLPYVYALL 58 (291)
Q Consensus 31 SPlp~i~~I~k~KStg~~s~lp~v~~~~ 58 (291)
+-+||+.+.+|+||++++|...+.....
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5689999999999999998877765443
No 14
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=89.53 E-value=0.86 Score=41.51 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=42.5
Q ss_pred hhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHh
Q 022823 137 MFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAY 188 (291)
Q Consensus 137 ~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~Y 188 (291)
+.+|+...+.....+ ++|+.+..|+||++++++.+.....+....|..|
T Consensus 5 ~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 5 QILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 456777776666655 6789999999999999999999999999999999
No 15
>PHA02246 hypothetical protein
Probab=88.03 E-value=17 Score=31.88 Aligned_cols=138 Identities=19% Similarity=0.282 Sum_probs=71.5
Q ss_pred HHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCC-cEEEeehhhhhHHHHHHHHHhhhccc
Q 022823 23 IFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN-ILVTTVNSIGAAFQLVYIILFITYTE 101 (291)
Q Consensus 23 i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~-~~Vi~~N~iG~~l~~~yl~vf~~y~~ 101 (291)
.-++..-....|+.+.+.|.|+++++|-. |+-.......-..|- ++..|. -+-+.+-+.-..++++.+.+- .|++
T Consensus 11 ~yailit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyN--lL~T~~~~fqi~svg~nl~lgivcLlv~-~~rk 86 (192)
T PHA02246 11 LYAILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYN--LLLTDASVFQIVSVGLNLTLGIVCLLVA-SYRK 86 (192)
T ss_pred HHHHHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHH--HHhcCCceEEEeeeehhhhhhhhheeee-hhhc
Confidence 33444445678999999999999998653 444445556777888 455442 122233333444455544332 2322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHH
Q 022823 102 KDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTF 179 (291)
Q Consensus 102 ~k~r~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ 179 (291)
+.--.+.. +.+++..... + .+..+..+.+ |...-+..| .+|+.+-.|||++|+.+..+.+.-.
T Consensus 87 kd~f~~~f------iiifSLllfl-l--~~~~evtQtV---at~tIiLaY---i~QIIqfyKTK~SEg~n~~l~lii~ 149 (192)
T PHA02246 87 KDYFSIPF------IIVFSLLLFL-L--SDFTALTQTV---ATITIILAY---VTQITTFYKTKSAEGTNRFLFLIIG 149 (192)
T ss_pred cccccchH------HHHHHHHHHH-H--hhhHHHHHHH---HHHHHHHHH---HHHHHHHhhhcccCCCChhHHHHHH
Confidence 11111111 1223322111 1 0111122222 333333335 5688899999999999876654433
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=85.17 E-value=0.87 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.110 Sum_probs=22.6
Q ss_pred chHHHHHHHHhcCCccccchHHHHHHHH
Q 022823 153 SPLFIINLVIQTKSVEFMPFYLSLSTFL 180 (291)
Q Consensus 153 SPL~~i~~VIrtKs~~~mp~~l~l~~~l 180 (291)
+-++|+.+.+|+||++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4578999999999999999877665443
No 17
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=85.15 E-value=0.3 Score=40.66 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=51.9
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHHHHHhhhccchhh
Q 022823 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDK 104 (291)
Q Consensus 42 ~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~yl~vf~~y~~~k~ 104 (291)
+|..+.+|..+-.++.+.+.+|+.|++ .+++.++.++.+|.+-...+.+++.=++.|....+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999999994 44445568999999999999999987777755443
No 18
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.99 E-value=0.71 Score=37.90 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=50.6
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHHHHHhhhccch
Q 022823 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEK 102 (291)
Q Consensus 42 ~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~yl~vf~~y~~~ 102 (291)
.|..|.+|.....+.....+.|..|++ .++..++.++.+|.+=...+.+++.=.+.|...
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~ 102 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQQQ 102 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999994 444455689999999999999999988888443
No 19
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=82.23 E-value=22 Score=30.85 Aligned_cols=137 Identities=7% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHH
Q 022823 13 LKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 92 (291)
Q Consensus 13 ~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~y 92 (291)
..+.+|.+|.+..+..| .. .++|. ........|.++...- .+-+.+ +-+.+..++...
T Consensus 4 ~aQ~~g~ia~~l~~~sf---~~-----k~~~~-------l~~~~~~~~~~~~ihf--~LLGa~-----taa~~~~ls~~R 61 (163)
T PF10688_consen 4 LAQILGFIAFLLGILSF---QQ-----KDDRR-------LLLLQAISCLLFAIHF--ALLGAW-----TAALSMLLSAVR 61 (163)
T ss_pred HHHHHHHHHHHHHHHHH---Hc-----ccHHH-------HHHHHHHHHHHHHHHH--HHhChH-----HHHHHHHHHHHH
Confidence 34667777776655433 11 11111 3445566677776666 455442 445666777777
Q ss_pred HHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccch
Q 022823 93 IILFITYTEKDKKVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPF 172 (291)
Q Consensus 93 l~vf~~y~~~k~r~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~ 172 (291)
..+..++.+ +. ....+..+.+.. ...+.+.-.+.++.++++.....- .. .+.+.
T Consensus 62 ~~~s~~~~~---~~--v~~~Fi~~~~~~-------~~~~~~g~~~~l~~~as~~~t~a~----------f~---~~~~~- 115 (163)
T PF10688_consen 62 NFVSIRTRS---RW--VMAVFIALSLVM-------GLFTWQGWIELLPYAASVLGTIAL----------FM---LDGIK- 115 (163)
T ss_pred HHHHHHhCC---HH--HHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHH----------Hh---cCchh-
Confidence 777665543 11 111111111111 111233445677777766555432 11 12222
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceeE
Q 022823 173 YLSLSTFLMSTSFLAYGIMNWDPFIY 198 (291)
Q Consensus 173 ~l~l~~~ln~~lW~~YGll~~D~fI~ 198 (291)
|=...++++.+|.+|+++.+++...
T Consensus 116 -mR~~~l~~~~~w~~~n~~igS~~g~ 140 (163)
T PF10688_consen 116 -MRILMLVGTLCWLIYNILIGSWGGT 140 (163)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3356799999999999999997655
No 20
>PHA02246 hypothetical protein
Probab=76.53 E-value=16 Score=32.08 Aligned_cols=59 Identities=7% Similarity=0.084 Sum_probs=38.4
Q ss_pred HHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhH
Q 022823 27 GLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAA 87 (291)
Q Consensus 27 ~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~ 87 (291)
...++-+||+.+-+|+|+.|+.|...++....+-.+=..== .+++-...++++......
T Consensus 119 tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m--~Lthv~~hIiiTEf~N~i 177 (192)
T PHA02246 119 TIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSM--VLTHTYVHIIATEFVNFV 177 (192)
T ss_pred HHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHH--hhhCCcceeeHHHHHHHH
Confidence 33456799999999999999999988877665544333222 344443345555544443
No 21
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=75.70 E-value=0.73 Score=38.38 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=59.8
Q ss_pred hhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhccc--CCceeEeeccccccchhhheeceeee
Q 022823 141 LLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIYVWFLLPSHFSLLILFGVCFF 218 (291)
Q Consensus 141 ~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll~--~D~fI~~~~~~~~~~~~~~~~~~~~~ 218 (291)
+-|.+..-.+-++++.++ +|..|.++..+..+..+.+++|+=|++.+ .|..+.
T Consensus 21 FWaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~-------------------- 75 (119)
T PF03650_consen 21 FWAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLF-------------------- 75 (119)
T ss_pred eehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHH--------------------
Confidence 334444444444555554 58999999999999999999999999987 443333
Q ss_pred eEEeecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHHHHHhhheeeecCCCCCCC
Q 022823 219 FCFMLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILGIVQLALYFNYKETSGEES 282 (291)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
-=|..-...+..|+.=+.+|....++|.
T Consensus 76 ------------------------------------a~n~~~~~~q~~Ql~R~~~y~~~~~~~~ 103 (119)
T PF03650_consen 76 ------------------------------------ACNFFNATTQLYQLYRKLNYQYSQKKEA 103 (119)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 3377777889999999999987666553
No 22
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=54.55 E-value=24 Score=32.42 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=54.2
Q ss_pred HhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHHHHHhhhcc
Q 022823 29 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYT 100 (291)
Q Consensus 29 flSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~yl~vf~~y~ 100 (291)
-.|=++|+..-.|+|++|..|.......+..|..=..|. ....+++.+...-.+..+++..-..-..+|.
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~ 223 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYW 223 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999 6776666666666666666555444444443
No 23
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=48.96 E-value=3.4e+02 Score=28.44 Aligned_cols=52 Identities=15% Similarity=0.456 Sum_probs=38.2
Q ss_pred HhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHHH
Q 022823 29 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYI 93 (291)
Q Consensus 29 flSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~yl 93 (291)
+..|+..+-+.+-.=+-+++.|.|+++.+. ++.|| ++-+|. +-|+++.++-+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFG--mM~gD~-------GyGLil~l~~~ 376 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFG--MMLGDA-------GYGLLLLLIGL 376 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHH--HHHHhH-------HHHHHHHHHHH
Confidence 356778888888888889999999987654 68889 777784 45666665333
No 24
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=38.23 E-value=21 Score=30.93 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHHHHHH
Q 022823 54 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVY 92 (291)
Q Consensus 54 v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l~~~y 92 (291)
...+.++.+|+.|+ ++.+++ +....|......+.+.
T Consensus 118 ~~~l~~~~~w~~~n--~~igS~-~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGSW-GGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcCH-HHHHHHHHHHHHHHHH
Confidence 35789999999999 788785 5666666655555443
No 25
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=37.21 E-value=23 Score=33.28 Aligned_cols=45 Identities=24% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHh
Q 022823 20 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (291)
Q Consensus 20 la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG 67 (291)
+|.+.+++-..+.+||+..-+|+|+++++++..| .+++..=..|+
T Consensus 169 lG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F---~~~~~~n~~y~ 213 (260)
T KOG2913|consen 169 LGSLSALLYLGARIPQIILNHLRKSTEGLSLLAF---AFNSLGNTTYI 213 (260)
T ss_pred HHHHHHHHHcccccchhhhhhccCccchhHHHHH---HHHHccccccc
Confidence 4445555666899999999999999999988544 45566667777
No 26
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=33.99 E-value=90 Score=31.20 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccC-CcEEEeehhhhhHHHHHH
Q 022823 21 GNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD-NILVTTVNSIGAAFQLVY 92 (291)
Q Consensus 21 a~i~ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d-~~~Vi~~N~iG~~l~~~y 92 (291)
+.+-+++=|++-=.++.-++++||.+++|....+.-+++...=++|= +.+| .+.|++++++|+++++.=
T Consensus 306 s~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~WK 375 (438)
T PF05602_consen 306 SLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAWK 375 (438)
T ss_pred HHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhhee
Confidence 34446667778889999999999999999999888888888888886 4533 457999999999998754
No 27
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.73 E-value=9.4 Score=31.45 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=29.3
Q ss_pred cCCccccchHHHHHHHHHHHHHHHhhccc--CCceeE
Q 022823 164 TKSVEFMPFYLSLSTFLMSTSFLAYGIMN--WDPFIY 198 (291)
Q Consensus 164 tKs~~~mp~~l~l~~~ln~~lW~~YGll~--~D~fI~ 198 (291)
.|..|.++..-+++-+..+++|+=|.+.+ +|.++.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~Lf 79 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLF 79 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhh
Confidence 46788899999999999999999999987 665444
No 28
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.37 E-value=1.9e+02 Score=29.18 Aligned_cols=176 Identities=14% Similarity=0.251 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHH-H--HHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCC----cEEEeehhhh
Q 022823 13 LKDAVGIAGNIFAFGLFVSPVPTFRR-I--IRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN----ILVTTVNSIG 85 (291)
Q Consensus 13 ~~~ilG~la~i~ti~mflSPlp~i~~-I--~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~----~~Vi~~N~iG 85 (291)
..-.+...+.-.+..+++.-.|+..+ + ..-|++|-++.+|++.++.....+..-.= .+..+. .-.-+-|.++
T Consensus 261 wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD-~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 261 WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD-RLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccCchHhHHHHHHhHH
Confidence 44445555555666666777777666 2 24567888899999998887776644441 111100 0224568888
Q ss_pred hHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHH--H-HHhhhccccccchhhhhhhHHHHHHHHhhchHHHHHHHH
Q 022823 86 AAFQLVYIILFITYTEKDKKVRMLGLLLAVIGIFSII--V-AVSLQIVNPFSRQMFVGLLSCAALISMFASPLFIINLVI 162 (291)
Q Consensus 86 ~~l~~~yl~vf~~y~~~k~r~~~~~~~~~~~~i~si~--~-~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VI 162 (291)
.....+.+.+-- |.++.++...+.......+..+.. . +.....+.++-...++|..-.+.++..+.+|+. +....
T Consensus 340 ~~~~ai~l~~l~-~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~-vg~~~ 417 (466)
T KOG2532|consen 340 FGGPAVFLLVLA-FTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL-VGIIV 417 (466)
T ss_pred HHHHHHHHHeee-ecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh-eeeEe
Confidence 888877776644 444433321111110111111110 0 111111133344567788888888888889876 34444
Q ss_pred hcCCccccchHHHHHHHHHHHHHHHhhcc
Q 022823 163 QTKSVEFMPFYLSLSTFLMSTSFLAYGIM 191 (291)
Q Consensus 163 rtKs~~~mp~~l~l~~~ln~~lW~~YGll 191 (291)
++++.+.=.....+.+.+.-...+.|-+.
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 44433443433444444444444444443
No 29
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=26.11 E-value=1.3e+02 Score=27.79 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=41.8
Q ss_pred cccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHH
Q 022823 130 VNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMS 182 (291)
Q Consensus 130 ~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~ 182 (291)
.+++...+++|.+|.+.+-.|-+--=...|+++...|-..-..-|+...|+|-
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL 178 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNL 178 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 46677788999999998888866666677888888888887777777777764
No 30
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=25.39 E-value=5.4e+02 Score=26.86 Aligned_cols=157 Identities=17% Similarity=0.078 Sum_probs=98.5
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccC-CcEEEeehhhhhHHHHHHHHH--------
Q 022823 25 AFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD-NILVTTVNSIGAAFQLVYIIL-------- 95 (291)
Q Consensus 25 ti~mflSPlp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d-~~~Vi~~N~iG~~l~~~yl~v-------- 95 (291)
++.=|++-=.++.=+.|+||-+++|.-..+..++++..=..|= +.++ .+-|.++-++|+++++.=+--
T Consensus 329 ~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~ 405 (592)
T KOG2489|consen 329 SVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDW 405 (592)
T ss_pred HHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecCCccEEEEEeccceeeeeeeecceEEEEEEec
Confidence 4444555566777788999999999999999999999888887 4543 467899999999887643211
Q ss_pred ----h-----------hhccchhhHH------HHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhHHHHHHHHhhch
Q 022823 96 ----F-----------ITYTEKDKKV------RMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFVGLLSCAALISMFASP 154 (291)
Q Consensus 96 ----f-----------~~y~~~k~r~------~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~lG~ia~v~ti~~f~SP 154 (291)
. -.|+.++.+. |-++.++.- .+++..+|.....++..-..=++-...+.+-.+-|.--
T Consensus 406 ~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~P-L~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M 484 (592)
T KOG2489|consen 406 SGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFP-LLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFM 484 (592)
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHh
Confidence 1 1122111111 112222111 11222223333344444334445555555555555555
Q ss_pred HHHHHHHHhcCCccccchHHHHHHHHHHHHH
Q 022823 155 LFIINLVIQTKSVEFMPFYLSLSTFLMSTSF 185 (291)
Q Consensus 155 L~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW 185 (291)
++|+----|-||++-+|..+..--++|.++=
T Consensus 485 ~PQLFINYKLKSVAHLPWR~~tYKa~NTFID 515 (592)
T KOG2489|consen 485 LPQLFINYKLKSVAHLPWRAFTYKAFNTFID 515 (592)
T ss_pred ChHHHhhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 7788888899999999999988888887643
No 31
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=24.44 E-value=1.4e+02 Score=22.71 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHhhhhhccCCcEEEeehhhhhHH
Q 022823 33 VPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 88 (291)
Q Consensus 33 lp~i~~I~k~KStg~~s~lp~v~~~~n~~lWl~YG~~ll~~d~~~Vi~~N~iG~~l 88 (291)
+-|-..-.|+|. ..+|..-....+.++.+=+.|| +..+| +..+...+.|.+.
T Consensus 14 ~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 444444445444 2345555567789999999999 77777 4455555555554
No 32
>COG3952 Predicted membrane protein [Function unknown]
Probab=24.27 E-value=49 Score=27.19 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=32.5
Q ss_pred HhcCCccccchHHHHHHHHHHHHHHHhhcccCCceeE
Q 022823 162 IQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIY 198 (291)
Q Consensus 162 IrtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~fI~ 198 (291)
.+.++.+.+|.+.--++.+.+.+=+.|.+-++|..=+
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~V 84 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFV 84 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHH
Confidence 4778889999999999999999999999999995433
No 33
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=21.70 E-value=6.2e+02 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.009 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchh
Q 022823 13 LKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLP 52 (291)
Q Consensus 13 ~~~ilG~la~i~ti~mflSPlp~i~~I~k~KStg~~s~lp 52 (291)
..+++|++..+ .=-.|-.|+++-=.|+||+.++|+-.
T Consensus 123 l~~IvGwvYf~---aWSISfYPqii~N~RrKSv~gLnfDF 159 (372)
T KOG3145|consen 123 LDQIVGWVYFV---AWSISFYPQIILNWRRKSVVGLNFDF 159 (372)
T ss_pred HHhhhheeEEE---EEeeeechHHHhhhhhcceeccccce
Confidence 34555554332 22246689999999999999988753
No 34
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=21.11 E-value=1.1e+02 Score=28.63 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=34.5
Q ss_pred eeEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHH--HHHHhhheee
Q 022823 218 FFCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTIL--GIVQLALYFN 273 (291)
Q Consensus 218 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 273 (291)
.++| ++|+|+.-|+.....+++ |+.+ ||.+.++ +..|.-+|..
T Consensus 225 ~~v~D~vY~P~~T~ll~~A~~~G--~~~~-----------~Gl~MLv~Qa~~~f~lwtg 270 (282)
T TIGR01809 225 GIFLDAAYDPWPTPLVAIVSAAG--WRVI-----------SGLQMLLHQGFAQFEQWTG 270 (282)
T ss_pred cEEEEEeeCCCCCHHHHHHHHCC--CEEE-----------CcHHHHHHHHHHHHHHHHC
Confidence 3466 999999999999999988 7765 9999988 6666666654
No 35
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=3.5e+02 Score=27.74 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=42.6
Q ss_pred cccccchhhhhhhHHHHHHHHhhchHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhcccCCceeEeeccccccchh
Q 022823 130 VNPFSRQMFVGLLSCAALISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIYVWFLLPSHFSL 209 (291)
Q Consensus 130 ~~~~~~~~~lG~ia~v~ti~~f~SPL~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~fI~~~~~~~~~~~~ 209 (291)
..+|..+++-=-+....+++.|.+-.+. .---.+|++|+ ++.+++|++-++=.-..--..+
T Consensus 259 lppD~gEKitL~iTilLsvc~FL~mvse----~~PpTSeaVPl---lg~fFsc~m~iv~~SvvfTv~v------------ 319 (486)
T KOG3646|consen 259 LPPDAGEKITLQITILLSVCFFLTMVSE----MTPPTSEAVPL---LGAFFSCCMFIVAASVVFTVIV------------ 319 (486)
T ss_pred cCccccceeeeeeehHHHHHHHHHHHHh----hcCCccccccH---HHHHHHHHHHHHHhhheeEEEE------------
Confidence 3444444433334555555555443332 12345688886 5778888766443322222222
Q ss_pred hheeceeeeeEEeecccccchhhHHhhhh
Q 022823 210 LILFGVCFFFCFMLYNIQTVSLQSLLLQK 238 (291)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (291)
.=|++-+|.+|-..+ |.|+
T Consensus 320 ---------Ln~h~R~p~~h~m~p-~~r~ 338 (486)
T KOG3646|consen 320 ---------LNLHHRTPETHEMSP-WTRS 338 (486)
T ss_pred ---------EeeeccCccccccCH-HHHH
Confidence 235777788888777 6654
No 36
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=20.89 E-value=81 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=30.2
Q ss_pred hcCCccccchHHHHHHHHHHHHHHHhhcccCCceeE
Q 022823 163 QTKSVEFMPFYLSLSTFLMSTSFLAYGIMNWDPFIY 198 (291)
Q Consensus 163 rtKs~~~mp~~l~l~~~ln~~lW~~YGll~~D~fI~ 198 (291)
+++....+|...-..+.+.+++=++||+..+|...+
T Consensus 21 Ek~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~i 56 (72)
T PF07578_consen 21 EKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFI 56 (72)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 455556779999999999999999999999997544
Done!