Query 022823
Match_columns 291
No_of_seqs 180 out of 1254
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6h_A Phosphatidylinositol 4, 12.7 24 0.00082 27.5 -1.5 16 225-241 2-17 (120)
2 3tum_A Shikimate dehydrogenase 11.7 1.3E+02 0.0045 26.6 2.9 33 219-264 220-253 (269)
3 3jyo_A Quinate/shikimate dehyd 10.0 1.8E+02 0.006 25.9 3.1 33 219-264 224-257 (283)
4 3t4e_A Quinate/shikimate dehyd 8.2 1.7E+02 0.0057 26.6 2.2 34 218-264 251-285 (312)
5 2nr1_A NR1 M2, M2; receptor, s 7.6 1.1E+02 0.0038 18.2 0.4 13 180-192 9-21 (27)
6 1cqt_I POU domain, class 2, as 7.5 1.4E+02 0.0046 19.5 0.9 15 227-241 24-38 (44)
7 3fbt_A Chorismate mutase and s 7.3 1.8E+02 0.006 26.0 1.9 34 218-264 208-242 (282)
8 1npy_A Hypothetical shikimate 7.0 2.6E+02 0.0089 24.5 2.9 33 219-264 208-241 (271)
9 2ks1_B Epidermal growth factor 7.0 2.3E+02 0.008 18.5 1.9 11 254-264 9-19 (44)
10 3bz1_X Photosystem II PSBX pro 5.8 2.7E+02 0.0093 18.8 1.7 25 163-187 3-27 (50)
No 1
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=12.68 E-value=24 Score=27.53 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=13.8
Q ss_pred ccccchhhHHhhhhccc
Q 022823 225 NIQTVSLQSLLLQKKVI 241 (291)
Q Consensus 225 ~~~~~~~~~~~~~~~~~ 241 (291)
||.+ |+++||+.|+=.
T Consensus 2 ~p~~-~~k~G~L~Kk~~ 17 (120)
T 4a6h_A 2 HPFT-EIKSGFLERRSK 17 (120)
T ss_dssp CCCC-CSEEEEEEEEET
T ss_pred CCCc-ccEEEEEEEcCC
Confidence 7899 999999998753
No 2
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=11.70 E-value=1.3e+02 Score=26.65 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=26.1
Q ss_pred eEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH
Q 022823 219 FCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG 264 (291)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
+|| ++|+|+.-|+-....+++ |+.+ ||.+.++.
T Consensus 220 ~v~D~vY~P~~T~ll~~A~~~G--~~~~-----------~Gl~MLv~ 253 (269)
T 3tum_A 220 LVADVVTSPEITPLLNRARQVG--CRIQ-----------TGPEMAFA 253 (269)
T ss_dssp EEEECCCSSSSCHHHHHHHHHT--CEEE-----------CHHHHHHH
T ss_pred EEEEEccCCCCCHHHHHHHHCc--CEEE-----------CcHHHHHH
Confidence 455 999999999988887776 5544 99998754
No 3
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=9.99 E-value=1.8e+02 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=26.2
Q ss_pred eEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH
Q 022823 219 FCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG 264 (291)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
++| ++|+|+.-|+-....+++ |+.+ ||.+.++.
T Consensus 224 ~v~DlvY~P~~T~ll~~A~~~G--~~~~-----------~Gl~MLv~ 257 (283)
T 3jyo_A 224 WVGDVVYMPIETELLKAARALG--CETL-----------DGTRMAIH 257 (283)
T ss_dssp EEEECCCSSSSCHHHHHHHHHT--CCEE-----------CTHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHCc--CeEe-----------CcHHHHHH
Confidence 456 999999999887777776 5544 99999874
No 4
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=8.17 E-value=1.7e+02 Score=26.61 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=26.7
Q ss_pred eeEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH
Q 022823 218 FFCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG 264 (291)
Q Consensus 218 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
.+|| ++|+|+.-|+-....+++ |+.+ ||.+.++.
T Consensus 251 ~~v~D~vY~P~~T~ll~~A~~~G--~~~~-----------~Gl~MLv~ 285 (312)
T 3t4e_A 251 LLVTECVYNPHMTKLLQQAQQAG--CKTI-----------DGYGMLLW 285 (312)
T ss_dssp CEEEECCCSSSSCHHHHHHHHTT--CEEE-----------CHHHHHHH
T ss_pred CEEEEeccCCCCCHHHHHHHHCC--CeEE-----------CcHHHHHH
Confidence 4567 999999999887777776 5544 99999874
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=7.63 E-value=1.1e+02 Score=18.16 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=10.1
Q ss_pred HHHHHHHHhhccc
Q 022823 180 LMSTSFLAYGIMN 192 (291)
Q Consensus 180 ln~~lW~~YGll~ 192 (291)
+.+.+|+.+|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4577899999865
No 6
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=7.50 E-value=1.4e+02 Score=19.54 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=11.6
Q ss_pred ccchhhHHhhhhccc
Q 022823 227 QTVSLQSLLLQKKVI 241 (291)
Q Consensus 227 ~~~~~~~~~~~~~~~ 241 (291)
-|.|.+|++.||.=.
T Consensus 24 VkePVKELLrRKRG~ 38 (44)
T 1cqt_I 24 VKEPVKELLRRKRGH 38 (44)
T ss_dssp CSSCHHHHHHHTTC-
T ss_pred cccHHHHHHHHhhcc
Confidence 377999999998644
No 7
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=7.35 E-value=1.8e+02 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=26.6
Q ss_pred eeEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH
Q 022823 218 FFCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG 264 (291)
Q Consensus 218 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
-++| ++|+|+.-|+-....+++ |+.+ ||.+.++.
T Consensus 208 ~~v~DlvY~P~~T~ll~~A~~~G--~~~~-----------~Gl~MLv~ 242 (282)
T 3fbt_A 208 SSAVDLIYNPVETLFLKYARESG--VKAV-----------NGLYMLVS 242 (282)
T ss_dssp SEEEESCCSSSSCHHHHHHHHTT--CEEE-----------CSHHHHHH
T ss_pred CEEEEEeeCCCCCHHHHHHHHCc--CeEe-----------CcHHHHHH
Confidence 3466 999999999988777776 5544 99999874
No 8
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=7.00 E-value=2.6e+02 Score=24.54 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=25.5
Q ss_pred eEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH
Q 022823 219 FCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG 264 (291)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
++| ++|+|+.-|+-+...+++ |+.+ ||.+.++.
T Consensus 208 ~v~DlvY~P~~T~ll~~A~~~G--~~~i-----------~Gl~MLv~ 241 (271)
T 1npy_A 208 VAFDVVAMPVETPFIRYAQARG--KQTI-----------SGAAVIVL 241 (271)
T ss_dssp EEEECCCSSSSCHHHHHHHHTT--CEEE-----------CHHHHHHH
T ss_pred EEEEeecCCCCCHHHHHHHHCC--CEEE-----------CCHHHHHH
Confidence 456 899999889988887777 4444 89998765
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.96 E-value=2.3e+02 Score=18.46 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=5.2
Q ss_pred ccCchhHHHHH
Q 022823 254 QVPNGIGTILG 264 (291)
Q Consensus 254 ~~~~~~~~~~~ 264 (291)
..|...|.+.|
T Consensus 9 ~~~~IA~gVVg 19 (44)
T 2ks1_B 9 KIPSIATGMVG 19 (44)
T ss_dssp CSSSSTHHHHH
T ss_pred CcceEEeehhH
Confidence 35554444444
No 10
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=5.81 E-value=2.7e+02 Score=18.81 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=14.0
Q ss_pred hcCCccccchHHHHHHHHHHHHHHH
Q 022823 163 QTKSVEFMPFYLSLSTFLMSTSFLA 187 (291)
Q Consensus 163 rtKs~~~mp~~l~l~~~ln~~lW~~ 187 (291)
+..+..-+-..+++.+|+.++.|-.
T Consensus 3 ~~~~~~l~~mTpSL~NFl~SlvaG~ 27 (50)
T 3bz1_X 3 QSASSLLLTITPSLKGFFIGLLSGA 27 (50)
T ss_dssp --------CCCHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCHHHHHHHHHHHHHH
Confidence 3344444556788999999998864
Done!