Query 022823
Match_columns 291
No_of_seqs 180 out of 1254
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 11:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022823.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022823hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1npya1 c.2.1.7 (A:103-269) Sh 9.0 73 0.0053 23.8 2.1 41 219-272 106-149 (167)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 6.2 1E+02 0.0074 21.0 1.6 28 260-287 29-56 (91)
3 d1rkla_ f.23.30.1 (A:) Oligosa 4.8 91 0.0067 17.9 0.4 20 257-276 8-27 (36)
4 d1vf5c3 f.23.23.1 (C:250-286) 4.5 3.4E+02 0.025 15.7 2.9 17 155-171 18-34 (37)
5 d1nvta1 c.2.1.7 (A:111-287) Sh 4.2 1.5E+02 0.011 21.8 1.5 42 219-273 115-159 (177)
6 d1vb5a_ c.124.1.5 (A:) Putativ 3.8 2.1E+02 0.015 23.3 2.2 25 223-247 137-167 (274)
7 d1nyta1 c.2.1.7 (A:102-271) Sh 3.6 2.4E+02 0.017 20.5 2.2 42 219-272 108-152 (170)
8 d1qhla_ c.37.1.12 (A:) Cell di 3.2 2.3E+02 0.017 19.5 1.7 21 255-275 31-53 (222)
9 d1xioa_ f.13.1.1 (A:) Sensory 2.9 9.6E+02 0.07 17.9 8.9 35 156-191 148-182 (226)
10 d1vm9a_ b.33.1.1 (A:) Toluene- 2.7 2.6E+02 0.019 18.8 1.4 34 217-250 36-71 (109)
No 1
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Probab=8.96 E-value=73 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=28.9
Q ss_pred eEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH--HHHhhhee
Q 022823 219 FCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG--IVQLALYF 272 (291)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 272 (291)
++| ++|+|+.-|+-+...+++ |+.+ ||.+..+. +.|.-+|.
T Consensus 106 ~v~D~vY~P~~T~ll~~A~~~G--~~~i-----------~Gl~Mli~Qa~~~f~lwt 149 (167)
T d1npya1 106 VAFDVVAMPVETPFIRYAQARG--KQTI-----------SGAAVIVLQAVEQFELYT 149 (167)
T ss_dssp EEEECCCSSSSCHHHHHHHHTT--CEEE-----------CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccCCCHHHHHHHHCC--CeEE-----------ECHHHHHHHHHHHHHHHh
Confidence 445 899999999987776655 5545 89988874 55555554
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.19 E-value=1e+02 Score=21.01 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=13.6
Q ss_pred HHHHHHHHhhheeeecCCCCCCCCCCcc
Q 022823 260 GTILGIVQLALYFNYKETSGEESRDPLI 287 (291)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (291)
+.+....-+...++|+++++++...|+.
T Consensus 29 ~v~V~~~~~~~~~ryR~~~~~~~~~~~~ 56 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASNKDAKYSPNW 56 (91)
T ss_dssp TTHHHHHHHTTTTTTTTSTTTCSSCCCC
T ss_pred HHHHHHHHHhhheeeeccCCccCCCCcc
Confidence 3333333344445566666555445543
No 3
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.81 E-value=91 Score=17.88 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.9
Q ss_pred chhHHHHHHHHhhheeeecC
Q 022823 257 NGIGTILGIVQLALYFNYKE 276 (291)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~ 276 (291)
|++..++|++.+.|...|..
T Consensus 8 n~~~i~fgi~mmtliviyh~ 27 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYHA 27 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHhh
Confidence 99999999999999888864
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.52 E-value=3.4e+02 Score=15.65 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCccccc
Q 022823 155 LFIINLVIQTKSVEFMP 171 (291)
Q Consensus 155 L~~i~~VIrtKs~~~mp 171 (291)
+.++--|+|+|..|-..
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667778888776543
No 5
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.17 E-value=1.5e+02 Score=21.78 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=30.2
Q ss_pred eEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH--HHHhhheee
Q 022823 219 FCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG--IVQLALYFN 273 (291)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 273 (291)
++| +.|+|+..|+-..+.+.+ |+.+ ||.+.++. +.|.-+|..
T Consensus 115 ~v~D~~y~p~~T~l~~~a~~~G--~~~i-----------~Gl~MLv~Qa~~qf~lwtg 159 (177)
T d1nvta1 115 VVMDLIYNPLETVLLKEAKKVN--AKTI-----------NGLGMLIYQGAVAFKIWTG 159 (177)
T ss_dssp EEEECCCSSSSCHHHHHHHTTT--CEEE-----------CTHHHHHHHHHHHHHHHHS
T ss_pred ceeeecCCcHhHHHHHHHHHCC--Cccc-----------CCHHHHHHHHHHHHHHHHC
Confidence 344 889999999999887665 4434 88888763 666666643
No 6
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.77 E-value=2.1e+02 Score=23.27 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=19.1
Q ss_pred ecccccchhhHH------hhhhcccCcccee
Q 022823 223 LYNIQTVSLQSL------LLQKKVICPLVTI 247 (291)
Q Consensus 223 ~~~~~~~~~~~~------~~~~~~~~~~~~~ 247 (291)
+|...++|..|| +.+.|++|-+++-
T Consensus 137 V~v~EsrP~~eG~~la~~L~~~GI~vtlI~D 167 (274)
T d1vb5a_ 137 VILTESSPDYEGLHLARELEFSGIEFEVITD 167 (274)
T ss_dssp EEEECCTTTTHHHHHHHHHHHTTCCEEEECG
T ss_pred EEEeCCCcccchHHHHHHHHHcCCceEEecc
Confidence 456789999877 5778898888743
No 7
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=2.4e+02 Score=20.46 Aligned_cols=42 Identities=17% Similarity=0.466 Sum_probs=27.6
Q ss_pred eEE-eecccccchhhHHhhhhcccCccceeehhhhcccCchhHHHHH--HHHhhhee
Q 022823 219 FCF-MLYNIQTVSLQSLLLQKKVICPLVTITFLLKFQVPNGIGTILG--IVQLALYF 272 (291)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 272 (291)
++| ++|+|+.-|+-+...+++ |+. +-||.+..+. +.|.-+|.
T Consensus 108 ~v~D~vY~P~~T~ll~~A~~~G--~~~----------~i~Gl~MLi~Qa~~~f~lwt 152 (170)
T d1nyta1 108 YCYDMFYQKGKTPFLAWCEQRG--SKR----------NADGLGMLVAQAAHAFLLWH 152 (170)
T ss_dssp EEEESCCCSSCCHHHHHHHHTT--CCE----------EECTHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCCCHHHHHHHHcC--CCc----------ccCCHHHHHHHHHHHHHHHh
Confidence 345 999999888887666655 321 3388888863 55555554
No 8
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
Probab=3.21 E-value=2.3e+02 Score=19.48 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=16.9
Q ss_pred cCchhH--HHHHHHHhhheeeec
Q 022823 255 VPNGIG--TILGIVQLALYFNYK 275 (291)
Q Consensus 255 ~~~~~~--~~~~~~~~~~~~~~~ 275 (291)
=|||.| +++..++++|+-..+
T Consensus 31 G~NGsGKStil~Ai~~~L~g~~~ 53 (222)
T d1qhla_ 31 GGNGAGKSTTMAAFVTALIPDLT 53 (222)
T ss_dssp SCCSHHHHHHHHHHHHHHSCCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCcc
Confidence 489999 899999999875443
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.91 E-value=9.6e+02 Score=17.90 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHHHHhhcc
Q 022823 156 FIINLVIQTKSVEFMPFYLSLSTFLMSTSFLAYGIM 191 (291)
Q Consensus 156 ~~i~~VIrtKs~~~mp~~l~l~~~ln~~lW~~YGll 191 (291)
...++..++++.+. .........+....|.+|++.
T Consensus 148 ~~~~~~~~~~~~~~-~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 148 NPLRAKTRTQSSEL-ANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp THHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554433 233334445566799999985
No 10
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]}
Probab=2.69 E-value=2.6e+02 Score=18.79 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=24.6
Q ss_pred eeeEEeeccc-ccchhhHH-hhhhcccCccceeehh
Q 022823 217 FFFCFMLYNI-QTVSLQSL-LLQKKVICPLVTITFL 250 (291)
Q Consensus 217 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (291)
.+..|--.|| +..||.++ .+.+.+.||.=--+|=
T Consensus 36 ~~~A~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~ 71 (109)
T d1vm9a_ 36 GVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFN 71 (109)
T ss_dssp EEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEE
T ss_pred eEEEEEeeCCCCCccceeEeccCCEEEcccCCceEE
Confidence 4567777788 57899776 4568899998755553
Done!