Query 022825
Match_columns 291
No_of_seqs 201 out of 1009
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 1.2E-47 2.5E-52 354.8 20.8 254 1-282 1-260 (310)
2 PF03105 SPX: SPX domain; Int 100.0 9E-33 2E-37 250.3 16.4 165 1-168 1-274 (275)
3 KOG1162 Predicted small molecu 100.0 7E-33 1.5E-37 277.1 17.0 185 1-202 1-210 (617)
4 COG5036 SPX domain-containing 99.9 2.8E-24 6.1E-29 204.3 15.5 167 1-200 1-170 (509)
5 COG5408 SPX domain-containing 99.7 4.2E-17 9.2E-22 151.2 13.0 51 119-169 242-292 (296)
6 PF10146 zf-C4H2: Zinc finger- 64.0 93 0.002 28.5 10.5 66 71-139 30-98 (230)
7 PF10112 Halogen_Hydrol: 5-bro 53.2 1.6E+02 0.0034 25.8 11.7 71 122-195 115-185 (199)
8 PF07889 DUF1664: Protein of u 34.5 2.7E+02 0.0059 23.1 8.8 66 69-134 39-108 (126)
9 COG5127 Vacuolar H+-ATPase V1 34.1 24 0.00052 33.8 1.6 21 258-278 30-50 (383)
10 PF09763 Sec3_C: Exocyst compl 34.0 5.8E+02 0.013 26.8 16.6 123 71-195 3-135 (701)
11 PF10267 Tmemb_cc2: Predicted 28.1 4.6E+02 0.01 26.0 9.5 37 74-110 227-270 (395)
12 PF01544 CorA: CorA-like Mg2+ 28.1 3.3E+02 0.0072 24.3 8.1 64 82-150 116-179 (292)
13 PF12176 MtaB: Methanol-cobala 26.2 44 0.00095 33.4 2.0 25 236-260 384-408 (461)
14 smart00526 H15 Domain in histo 26.0 37 0.00079 24.4 1.1 21 244-265 9-29 (66)
15 KOG4466 Component of histone d 22.9 5.5E+02 0.012 24.4 8.4 82 69-152 13-105 (291)
16 PF10805 DUF2730: Protein of u 22.7 3.9E+02 0.0085 21.2 6.6 40 95-135 46-85 (106)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=354.81 Aligned_cols=254 Identities=43% Similarity=0.592 Sum_probs=207.3
Q ss_pred CcchhhHhHhhhhhcchhhhhcCChHhHHHHHhhhcCCCCCCCCCCCCCCCccccccccccccccccchhHHHHHHHHHH
Q 022825 1 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLED 80 (291)
Q Consensus 1 MKFGK~L~~~i~~~vPEW~~~YIdYk~LKKlIK~~~~~~~~~~~~~r~~~d~~~~~~e~~~~~~~~~~~~~~~F~~~L~~ 80 (291)
|||||.|+.. .+|||+++||||+.|||+||+.........+. ...+..|+..|+.
T Consensus 1 MkFGk~L~~~---~l~ew~~~yinYk~LKK~lK~~~~~~~~~~~~----------------------~~~e~dFv~~Ld~ 55 (310)
T KOG1161|consen 1 MKFGKYLKEE---LLPEWKDKYINYKELKKLLKQYSIQTADSSPD----------------------SRDESDFVRLLDA 55 (310)
T ss_pred CchhHHHHHh---hhhhHhhhhcCHHHHHHHHHHhccccccCCcc----------------------cchHHHHHHHHHH
Confidence 9999999964 69999999999999999999975543211110 1158899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcC
Q 022825 81 EMDKFNSFFVEKEEEYIIRLKELQDRVANA---NDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTG 157 (291)
Q Consensus 81 El~KVn~Fy~~ke~el~~rl~~L~~~i~~~---~~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK~DK~tg 157 (291)
||+||+.||.++++++.+|+++|+++++.. ..+..++..|++++.+|++||++|.+|++||+|||+||||||||++|
T Consensus 56 ELEKv~~F~lek~~el~~Rl~~L~e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg 135 (310)
T KOG1161|consen 56 ELEKVNGFQLEKESELIIRLKELEEKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTG 135 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999752 12467889999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhhcCCCCCCCCCccccCCccccChhhHHHHHH
Q 022825 158 ALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKMLDGLFPKSEKPASTEAAEEGSEPTTSTTTKETSGDILQMPKELAEIEY 237 (291)
Q Consensus 158 ~~l~~~fi~~V~~qpF~~~~~l~~Lv~~~E~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (291)
..++.+|.+.|..+|||+++.+.+|+.+|+.+|+.+++.+....+... ......-.+++.--.....++...-.+.+
T Consensus 136 ~~l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~~~s~~~---~~~~~~~~t~k~wvH~~n~~e~k~~~~~~ 212 (310)
T KOG1161|consen 136 YRLRPYFQVRLLHQPFFTTEQLFRLVYEISILLDLLRPSNRNGESKES---NDSDFVRRTTKYWVHEDNVNEVKTYILRH 212 (310)
T ss_pred cccccHHHHHHHhCCCchhhhHHHHHHHHHHHHHHhcccccccccccc---cchhhhhhccccccCccccchhHHHHhcc
Confidence 999999999999999999999999999999999999998877322111 11111111122112222234455667778
Q ss_pred hhhhHHHh-HHHHHHHHHHHhcCCCcccCCCCCCCCCCCCC--Ccccc
Q 022825 238 MESLYMKS-TISALRALKEIRSGSSTVSVFSLPPLQISGLD--DSWKN 282 (291)
Q Consensus 238 ~~~~~~~~-t~~al~~~~~~~~~sst~~~~s~~~~~~~~~~--~~~~~ 282 (291)
+..+++.+ |++|++++...+++|+||+.||+||+..++.+ |.|+.
T Consensus 213 lpvL~~~~~~d~ait~~~~~n~~~~~y~~~l~~~~~a~~~rl~w~~~~ 260 (310)
T KOG1161|consen 213 LPVLVFNSPTDAAITTLYFDNSGSDLYSQFLLKSLLAEALRLRWYGKL 260 (310)
T ss_pred CcceecCCcchHHHHHHHHhccchHHHHHHhcccccchhhhhhhhcCC
Confidence 88888666 99999999999999999999999999999984 55554
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=9e-33 Score=250.30 Aligned_cols=165 Identities=35% Similarity=0.566 Sum_probs=125.2
Q ss_pred CcchhhHhHhhhhhcchhhhhcCChHhHHHHHhhhcCCCCCCCCCC----------------CCC------CCccccccc
Q 022825 1 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSK----------------RPR------FDESAVAGE 58 (291)
Q Consensus 1 MKFGK~L~~~i~~~vPEW~~~YIdYk~LKKlIK~~~~~~~~~~~~~----------------r~~------~d~~~~~~e 58 (291)
||||+.|+.+ ++|||+++||||+.|||+||.+........... ... ...+.....
T Consensus 1 MKFgk~L~~~---~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PF03105_consen 1 MKFGKQLQEN---AVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTS 77 (275)
T ss_pred CCchHHHHHh---cCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccccc
Confidence 9999999997 599999999999999999999876543210000 000 000000000
Q ss_pred cc---cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------C------------
Q 022825 59 DV---KATDGYMSREEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANAND----------S------------ 113 (291)
Q Consensus 59 ~~---~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~----------s------------ 113 (291)
.. ..........+..|+..|+.||+||+.||.+++.++..+++.|+.++..+.. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (275)
T PF03105_consen 78 PSSSNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSSNI 157 (275)
T ss_pred ccccccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhcccccc
Confidence 00 0001223457899999999999999999999999999999999998765420 0
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
Q 022825 114 --------------------------------------------------------------NEELIKIRKEIVDLHGEM 131 (291)
Q Consensus 114 --------------------------------------------------------------~~~~~~l~~~~~el~~el 131 (291)
......|+.+|.++|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~~l 237 (275)
T PF03105_consen 158 FSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYREL 237 (275)
T ss_pred ccCccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 012356889999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHh
Q 022825 132 VLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRV 168 (291)
Q Consensus 132 ~~L~~Y~~LN~tg~~KILKK~DK~tg~~l~~~fi~~V 168 (291)
.+|++|+.||+|||+||||||||++|+.++..||..|
T Consensus 238 ~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 238 ELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 9999999999999999999999999999999999865
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-33 Score=277.09 Aligned_cols=185 Identities=31% Similarity=0.417 Sum_probs=158.7
Q ss_pred CcchhhHhHhhhhhcchhhhhcCChHhHHHHHhhhcCCCCCCCCCCCCCCCccccccccccccccccchhHHHHHHHHHH
Q 022825 1 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLED 80 (291)
Q Consensus 1 MKFGK~L~~~i~~~vPEW~~~YIdYk~LKKlIK~~~~~~~~~~~~~r~~~d~~~~~~e~~~~~~~~~~~~~~~F~~~L~~ 80 (291)
|||||.|..|+ +|||++.||||+.||++||.+....++..++. .... .+...+.+..||+.||.
T Consensus 1 MKFgk~~~~q~---~pEW~~ay~dY~~lK~~l~~i~~~~~~~~~t~----------~~~~---~~~~~~~~~~Ff~~ld~ 64 (617)
T KOG1162|consen 1 MKFGKELESQL---VPEWRQAYIDYKYLKKLLKEIIENKPSSEETT----------FLMV---SEEGGEFEEVFFRRLDE 64 (617)
T ss_pred CcchHHHHHhc---CHHHHHHhhhHHHHHHHHHHHHhcCCCcCccH----------HHHH---HHhhhhhHHHHHHHHHH
Confidence 99999999996 99999999999999999999877654322110 0000 03346788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------------C-----HHHHHHHHHHHHHHHHHHHHHH
Q 022825 81 EMDKFNSFFVEKEEEYIIRLKELQDRVANAND--------------------S-----NEELIKIRKEIVDLHGEMVLLE 135 (291)
Q Consensus 81 El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~--------------------s-----~~~~~~l~~~~~el~~el~~L~ 135 (291)
|++|||.||.++++|+.++.+.|+.|+....+ . ...-.+|+.++.|+|.-+.+|+
T Consensus 65 el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk 144 (617)
T KOG1162|consen 65 ELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLK 144 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876521 0 1123568899999999999999
Q ss_pred hHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 022825 136 NYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKMLDGLFPKSEKPAS 202 (291)
Q Consensus 136 ~Y~~LN~tg~~KILKK~DK~tg~~l~~~fi~~V~~qpF~~~~~l~~Lv~~~E~l~~~~f~~~~~~~~ 202 (291)
+|+.||++||+||+|||||.++.+. ..|++.|...+|.+++.+++|+.+||++|.++|++||+..+
T Consensus 145 ~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~fan~nr~~~ 210 (617)
T KOG1162|consen 145 NYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHFANGNRRKA 210 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhCCChhHh
Confidence 9999999999999999999999999 89999999999999999999999999999999999997743
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-24 Score=204.25 Aligned_cols=167 Identities=31% Similarity=0.490 Sum_probs=141.0
Q ss_pred CcchhhHhHhhhhhcchhhhhcCChHhHHHHHhhhcCCCCCCCCCCCCCCCccccccccccccccccchhHHHHHHHHHH
Q 022825 1 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLED 80 (291)
Q Consensus 1 MKFGK~L~~~i~~~vPEW~~~YIdYk~LKKlIK~~~~~~~~~~~~~r~~~d~~~~~~e~~~~~~~~~~~~~~~F~~~L~~ 80 (291)
|+||+.|.+.+ .|+|+..||||..||++||.-... + +|.+..+..|++.|+.
T Consensus 1 M~Fg~~L~~~l---y~p~k~~YinYe~LK~~lK~~~~~---------------~----------~w~e~dEsdFVe~Ld~ 52 (509)
T COG5036 1 MRFGKKLKNNL---YPPYKYSYINYENLKKLLKESEEE---------------G----------SWSESDESDFVEELDK 52 (509)
T ss_pred CchhHHHHhcc---CcccccccCCHHHHHHHHhhcccc---------------C----------CCcccchHHHHHHHHH
Confidence 99999999976 999999999999999999982111 0 4667789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcC
Q 022825 81 EMDKFNSFFVEKEEEYIIRLKELQDRVANAN---DSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTG 157 (291)
Q Consensus 81 El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~---~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK~DK~tg 157 (291)
||+||-.|...++.++.+|+..|+++..... ++. ...+.+.+...+...|.+|.+||+|||.||+|||||.+|
T Consensus 53 eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~~ds~----~~~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~ 128 (509)
T COG5036 53 ELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQELDSD----NFPKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTG 128 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhcccCC----cchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999886331 221 122244555558899999999999999999999999999
Q ss_pred CcccHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 022825 158 ALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKMLDGLFPKSEKP 200 (291)
Q Consensus 158 ~~l~~~fi~~V~~qpF~~~~~l~~Lv~~~E~l~~~~f~~~~~~ 200 (291)
..++..|-.++...||+ .+..+.|+-++..+|.-+-.++++-
T Consensus 129 y~lkpvfqvrLk~~p~~-se~yd~Ll~kis~LY~~lR~~~~~i 170 (509)
T COG5036 129 YSLKPVFQVRLKAKPFF-SEQYDPLLYKISSLYNILRSSLSPI 170 (509)
T ss_pred ceechhHHHHhccCCcc-hhhhcHHHHHHHHHHHHHHhcCCcc
Confidence 98888887789999995 7889999999999999887766643
No 5
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.72 E-value=4.2e-17 Score=151.21 Aligned_cols=51 Identities=35% Similarity=0.591 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHhh
Q 022825 119 KIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVL 169 (291)
Q Consensus 119 ~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK~DK~tg~~l~~~fi~~V~ 169 (291)
.+++.+.++|..+..|+.|++||+|||+||+|||||.++..++..|+....
T Consensus 242 ~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~~ 292 (296)
T COG5408 242 LLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRSV 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 477889999999999999999999999999999999999999999987543
No 6
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.00 E-value=93 Score=28.49 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022825 71 EIDFISLLEDEMDKFNSFFVEKEEEY---IIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSA 139 (291)
Q Consensus 71 ~~~F~~~L~~El~KVn~Fy~~ke~el---~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y~~ 139 (291)
+..|+..+..|++.+..=+....++| ..-++.|+.-+.. +..+..+.+..+..+|+++.-|+..+.
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq---a~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ---AESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777665444444433 2223333333332 244556677788888888888887654
No 7
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=53.22 E-value=1.6e+02 Score=25.79 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHhhhcCCcccHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcC
Q 022825 122 KEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKMLDGLFP 195 (291)
Q Consensus 122 ~~~~el~~el~~L~~Y~~LN~tg~~KILKK~DK~tg~~l~~~fi~~V~~qpF~~~~~l~~Lv~~~E~l~~~~f~ 195 (291)
+.+.+==..+...+.|..-=.-+.+|++.||...........-+.....+ ....|..|....+..|.+++.
T Consensus 115 ~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e---~~~~L~~l~~~f~~~~~~l~~ 185 (199)
T PF10112_consen 115 KYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEE---IEETLDTLNQAFEKDLDKLLE 185 (199)
T ss_pred HHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33444446677778888877889999999998877665444433221111 246677777788888877774
No 8
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.49 E-value=2.7e+02 Score=23.14 Aligned_cols=66 Identities=9% Similarity=0.329 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHHHHH
Q 022825 69 REEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANAND----SNEELIKIRKEIVDLHGEMVLL 134 (291)
Q Consensus 69 ~~~~~F~~~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~----s~~~~~~l~~~~~el~~el~~L 134 (291)
..-..+...+..+|+.|.+=....-.++..|++.|...++.... -.+++..++..+..+..++..+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566788888999999888888888888888887777665421 1223334444444444444443
No 9
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=34.06 E-value=24 Score=33.82 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.3
Q ss_pred cCCCcccCCCCCCCCCCCCCC
Q 022825 258 SGSSTVSVFSLPPLQISGLDD 278 (291)
Q Consensus 258 ~~sst~~~~s~~~~~~~~~~~ 278 (291)
+|+||+|+|-+||+....+|.
T Consensus 30 ggrstvs~f~~P~Fk~~SLd~ 50 (383)
T COG5127 30 GGRSTVSRFLLPSFKGVSLDG 50 (383)
T ss_pred cCccccccccCCCccccchHH
Confidence 899999999999998776653
No 10
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=33.98 E-value=5.8e+02 Score=26.84 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHHHHHH------hHHHH
Q 022825 71 EIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANANDS----NEELIKIRKEIVDLHGEMVLLE------NYSAL 140 (291)
Q Consensus 71 ~~~F~~~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s----~~~~~~l~~~~~el~~el~~L~------~Y~~L 140 (291)
-..|.+.|..||..+..=.....-+...+++.|...+..+..- +..+......+..+..+|..++ .=..-
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~ 82 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSA 82 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 3568888888888888777666655555666555555443210 0111111122222223332222 23455
Q ss_pred HHHHHHHHHHhHhhhcCCcccHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcC
Q 022825 141 NYTGLVKILKKYDKRTGALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKMLDGLFP 195 (291)
Q Consensus 141 N~tg~~KILKK~DK~tg~~l~~~fi~~V~~qpF~~~~~l~~Lv~~~E~l~~~~f~ 195 (291)
|...+.+-|...-... .+....+..+.+.+|-+.+.|..+...++.+|..+-.
T Consensus 83 N~k~L~~eL~~Ll~~l--~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~ 135 (701)
T PF09763_consen 83 NQKLLLNELENLLDTL--SIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKA 135 (701)
T ss_pred HHHHHHHHHHHHHHhc--CCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 6666666665554333 3567788888889998888899999999999987766
No 11
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.08 E-value=4.6e+02 Score=26.05 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 022825 74 FISLLEDEMDKFNS-------FFVEKEEEYIIRLKELQDRVANA 110 (291)
Q Consensus 74 F~~~L~~El~KVn~-------Fy~~ke~el~~rl~~L~~~i~~~ 110 (291)
....|+.+++++.. |+.+...|-..|.+.|++++...
T Consensus 227 ~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 227 SQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555554 44444445555555666666543
No 12
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=28.07 E-value=3.3e+02 Score=24.34 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 022825 82 MDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILK 150 (291)
Q Consensus 82 l~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~KILK 150 (291)
++.+..-|.....++..+++.++..+... ... .....+.++.+++..+++...-+...+.+++.
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~-~~~----~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDR-PSN----ELLRELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHT-TTH----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cch----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566666767777777787777777221 111 22334555667777788888888888877777
No 13
>PF12176 MtaB: Methanol-cobalamin methyltransferase B subunit; InterPro: IPR021079 This entry represents a family of methanol-cobalamin methyltransferase B subunit (MtaB) proteins found in bacteria and archaea. Proteins in this family are approximately 460 amino acids in length. MtaB folds as a TIM barrel and contains a novel zinc-binding motif. Zinc(II) lies at the bottom of a funnel formed at the C-terminal beta-barrel end and ligates to two cysteinyl sulphurs (Cys-220 and Cys-269) and one carboxylate oxygen (Glu-164). The function of this protein is to catalyse the cleavage of the C-O bond in methanol by an SN2 mechanism. It complexes with MtaA and MtaC to perform this function []. ; PDB: 2I2X_E.
Probab=26.16 E-value=44 Score=33.35 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.2
Q ss_pred HHhhhhHHHhHHHHHHHHHHHhcCC
Q 022825 236 EYMESLYMKSTISALRALKEIRSGS 260 (291)
Q Consensus 236 ~~~~~~~~~~t~~al~~~~~~~~~s 260 (291)
++..++|.|+..||+.++.+||.|.
T Consensus 384 k~~~d~ylRak~AA~~a~~~i~~~~ 408 (461)
T PF12176_consen 384 KNGDDIYLRAKAAALEAIEIIREGV 408 (461)
T ss_dssp TTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhhh
Confidence 4448899999999999999999975
No 14
>smart00526 H15 Domain in histone families 1 and 5.
Probab=25.98 E-value=37 Score=24.35 Aligned_cols=21 Identities=43% Similarity=0.544 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHhcCCCcccC
Q 022825 244 KSTISALRALKEIRSGSSTVSV 265 (291)
Q Consensus 244 ~~t~~al~~~~~~~~~sst~~~ 265 (291)
--.+.|+.+|.| |+|||....
T Consensus 9 ~mI~eAI~~l~e-r~GsS~~aI 29 (66)
T smart00526 9 EMITEAISALKE-RKGSSLQAI 29 (66)
T ss_pred HHHHHHHHHcCC-CCCCCHHHH
Confidence 335688999999 999986543
No 15
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.95 E-value=5.5e+02 Score=24.39 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------HHHHHHHHHHHHHHHHHHHHHHhH
Q 022825 69 REEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANANDS-----------NEELIKIRKEIVDLHGEMVLLENY 137 (291)
Q Consensus 69 ~~~~~F~~~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s-----------~~~~~~l~~~~~el~~el~~L~~Y 137 (291)
..+..|+...+.=-+--+.|+..++..+..|+..|+.+++.+..- .++-..++..+.++|.++. .+=
T Consensus 13 ~~drrr~~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~--~e~ 90 (291)
T KOG4466|consen 13 DKDRRRANEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYC--VER 90 (291)
T ss_pred cHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 345666665554444456699999999999999999999876421 1122335555666766654 344
Q ss_pred HHHHHHHHHHHHHhH
Q 022825 138 SALNYTGLVKILKKY 152 (291)
Q Consensus 138 ~~LN~tg~~KILKK~ 152 (291)
+..+|..=.|-.||+
T Consensus 91 v~~eYe~E~~aAk~e 105 (291)
T KOG4466|consen 91 VEREYECEIKAAKKE 105 (291)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666555555554
No 16
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.67 E-value=3.9e+02 Score=21.15 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 022825 95 EYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLE 135 (291)
Q Consensus 95 el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~ 135 (291)
....|+..++..+..+ ++.+++..|+-.+.++.+++..|.
T Consensus 46 ~~~~Rl~~lE~~l~~L-Pt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 46 EHDRRLQALETKLEHL-PTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456666666666554 456777778878888877777664
Done!