Query 022825
Match_columns 291
No_of_seqs 201 out of 1009
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a3d_A Protein (de novo three- 38.3 25 0.00084 24.5 2.9 53 94-146 5-57 (73)
2 3pp5_A BRK1, protein brick1; t 32.5 1.4E+02 0.0048 21.5 6.7 40 71-110 18-57 (73)
3 2rqp_A Heterochromatin protein 20.6 50 0.0017 24.3 2.1 16 247-263 17-32 (88)
4 4egw_A Magnesium transport pro 20.2 3.8E+02 0.013 23.1 8.3 65 82-151 162-226 (280)
5 3p8c_E Probable protein brick1 19.8 2.6E+02 0.0088 20.2 8.6 40 71-110 18-57 (75)
6 1deq_A Fibrinogen (alpha chain 19.6 4.6E+02 0.016 24.7 8.8 45 89-136 111-155 (390)
7 2bbh_A Divalent cation transpo 19.4 3.6E+02 0.012 22.8 7.9 65 83-152 178-242 (269)
8 2yo3_A General control protein 19.4 4.8E+02 0.016 23.3 8.6 58 77-137 202-259 (268)
9 3twe_A Alpha4H; unknown functi 19.2 1.4E+02 0.0047 16.9 3.2 10 126-135 5-14 (27)
10 4b6i_A SMA2266; signaling prot 16.5 1.3E+02 0.0043 23.1 3.6 55 131-186 45-100 (102)
No 1
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=38.27 E-value=25 Score=24.45 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022825 94 EEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLV 146 (291)
Q Consensus 94 ~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~ 146 (291)
.++..|+..+..+++.+..|..++....+.+..|-.++.-.+.-.+-...|++
T Consensus 5 aefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgkgnpevealr 57 (73)
T 2a3d_A 5 AEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALR 57 (73)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 45667777777777766666666666666666666665544333333333333
No 2
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=32.50 E-value=1.4e+02 Score=21.51 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022825 71 EIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANA 110 (291)
Q Consensus 71 ~~~F~~~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~ 110 (291)
..+|+..+..-|.++..|-+.=..-+..++..|..++..+
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~l 57 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTIL 57 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999988888888888888777654
No 3
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.61 E-value=50 Score=24.26 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCcc
Q 022825 247 ISALRALKEIRSGSSTV 263 (291)
Q Consensus 247 ~~al~~~~~~~~~sst~ 263 (291)
+.|+.+|+| |+|||-.
T Consensus 17 ~eAI~~Lke-r~GsS~~ 32 (88)
T 2rqp_A 17 TEAIKACFQ-KSGASVV 32 (88)
T ss_dssp HHHHHHHHH-HTCCCHH
T ss_pred HHHHHHhcc-CCCcCHH
Confidence 477778888 9999864
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=20.21 E-value=3.8e+02 Score=23.06 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022825 82 MDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKK 151 (291)
Q Consensus 82 l~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK 151 (291)
++.|.+-|..-...+..+++.|++++-.. ...+ ....+..+-+++..|++...=|...+.++.+.
T Consensus 162 ld~ivd~y~~~l~~i~~~id~lE~~l~~~-~~~~----~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~ 226 (280)
T 4egw_A 162 LNEITRSYSRILMNLEDELEELEDKLLAG-YDRE----VMEKILGLRKTLVYFHKSLIANRDVLVLLKRK 226 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-Cchh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 45666777777777888888887766432 1222 33456778888889999999898888888753
No 5
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=19.84 E-value=2.6e+02 Score=20.21 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022825 71 EIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANA 110 (291)
Q Consensus 71 ~~~F~~~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~ 110 (291)
..+|+..+..-|.++..|-..=..-+..++..|..++..+
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~L 57 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTAL 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999988888888888888777654
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=19.60 E-value=4.6e+02 Score=24.66 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 022825 89 FVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLEN 136 (291)
Q Consensus 89 y~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~ 136 (291)
|.+-..++..++..|+..|..-. ..++.|+..|.+++.+|..|+.
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~---~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQV---QRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443321 2445555566666666666653
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=19.44 E-value=3.6e+02 Score=22.81 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 022825 83 DKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKY 152 (291)
Q Consensus 83 ~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK~ 152 (291)
+.|.+-|..-.+.+..+++.|++++-.- . .......+..+-+++..|+++..=+...+.++.+..
T Consensus 178 d~ivd~y~~~l~~i~~~id~lE~~v~~~--~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 178 DALVDDYFVLLEKIDDEIDVLEEEVLER--P---EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555566666666666554221 0 122345678888899999999999999999998753
No 8
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=19.41 E-value=4.8e+02 Score=23.28 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 022825 77 LLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENY 137 (291)
Q Consensus 77 ~L~~El~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y 137 (291)
-|..-+..++.+-..+..++..++..+..++..+ ++....|...|..+-+++..++..
T Consensus 202 QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~---~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 202 QLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQI---EDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444567888888888888888888777766554 233344445555555555544433
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=19.23 E-value=1.4e+02 Score=16.95 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 022825 126 DLHGEMVLLE 135 (291)
Q Consensus 126 el~~el~~L~ 135 (291)
++|.++..|+
T Consensus 5 elykeledlq 14 (27)
T 3twe_A 5 ELYKELEDLQ 14 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 10
>4b6i_A SMA2266; signaling protein; 1.95A {Serratia marcescens}
Probab=16.53 E-value=1.3e+02 Score=23.12 Aligned_cols=55 Identities=5% Similarity=0.068 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHhhhcCC-cccHHHHHHhhcCCCCCHHHHHHHHHHH
Q 022825 131 MVLLENYSALNYTGLVKILKKYDKRTGA-LIRLPFIQRVLQQPFFTTDLIYRLVKQC 186 (291)
Q Consensus 131 l~~L~~Y~~LN~tg~~KILKK~DK~tg~-~l~~~fi~~V~~qpF~~~~~l~~Lv~~~ 186 (291)
+...-+|-.=+++++++|.+||.++.-. ....+|- .+...-|+.+..|+.|+++-
T Consensus 45 ~lE~~~y~~Ea~~~~~~Li~kyl~~~y~~~~g~~~~-llKCldlyHS~ELd~L~~k~ 100 (102)
T 4b6i_A 45 YLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYH-TLDCLSLQNASEAETIFERY 100 (102)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCCCCSSSSCCH-HHHHHGGGTCHHHHHHHHHH
T ss_pred HHHHhcCchhhhHHHHHHHHHHHHhccCCCCCchhH-HHHHHHhhchHHHHHHHHHh
Confidence 3344555555788999999999887532 2333332 23344578889988888763
Done!