Query 022825
Match_columns 291
No_of_seqs 201 out of 1009
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 11:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022825.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022825hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bbha1 d.328.1.1 (A:13-244) M 28.6 72 0.0053 24.7 7.2 65 83-152 163-227 (232)
2 d1wlza1 a.39.1.7 (A:229-311) D 19.3 81 0.0059 20.2 4.8 38 132-169 9-47 (83)
3 d1ghca_ a.4.5.13 (A:) Histone 17.6 11 0.00083 25.4 -0.2 20 247-267 11-30 (75)
4 d1hsta_ a.4.5.13 (A:) Histone 16.7 6.7 0.00049 26.5 -1.7 16 247-263 10-25 (74)
5 d1skye1 a.69.1.1 (E:357-470) F 13.8 88 0.0064 22.6 3.9 32 162-193 47-88 (114)
6 d1sfka_ a.190.1.1 (A:) Flavivi 13.1 29 0.0021 23.4 0.9 28 131-158 39-66 (73)
7 d2jdid1 a.69.1.1 (D:358-475) F 11.5 1E+02 0.0074 22.4 3.7 31 162-192 50-90 (118)
8 d1usta_ a.4.5.13 (A:) Histone 10.5 16 0.0011 25.6 -1.3 17 247-264 14-30 (92)
9 d1etxa_ a.4.1.12 (A:) FIS prot 9.2 75 0.0054 21.5 2.1 35 119-153 53-87 (89)
10 d1khba1 c.91.1.1 (A:260-622) C 8.9 2.1E+02 0.015 24.6 5.4 34 76-109 324-362 (363)
No 1
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=28.57 E-value=72 Score=24.66 Aligned_cols=65 Identities=12% Similarity=0.027 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 022825 83 DKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKY 152 (291)
Q Consensus 83 ~KVn~Fy~~ke~el~~rl~~L~~~i~~~~~s~~~~~~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK~ 152 (291)
+.|..-|..-..++..+++.|++.+-.- . -..+...+..+-+++..|+++..=+...+.+|.+-.
T Consensus 163 d~ivd~y~~~l~~l~~~id~lE~~v~~~----~-~~~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r~~ 227 (232)
T d2bbha1 163 DALVDDYFVLLEKIDDEIDVLEEEVLER----P-EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 227 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC----C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566666666666777777766554321 1 122345678888888889999988999999988643
No 2
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.32 E-value=81 Score=20.18 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=27.0
Q ss_pred HHHHhHHHHHHHHHHHHHHhHhhhc-CCcccHHHHHHhh
Q 022825 132 VLLENYSALNYTGLVKILKKYDKRT-GALIRLPFIQRVL 169 (291)
Q Consensus 132 ~~L~~Y~~LN~tg~~KILKK~DK~t-g~~l~~~fi~~V~ 169 (291)
..|+....-+...+.++.+.||+.- |......|...+.
T Consensus 9 ~~l~~~i~~~~~~l~~~F~~~D~~~~G~i~~~ef~~~l~ 47 (83)
T d1wlza1 9 ARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICN 47 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHCTTCSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCceEChhHHHHHHH
Confidence 3566667778889999999999886 5555556655443
No 3
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.63 E-value=11 Score=25.39 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCCcccCCC
Q 022825 247 ISALRALKEIRSGSSTVSVFS 267 (291)
Q Consensus 247 ~~al~~~~~~~~~sst~~~~s 267 (291)
+.|+.+|+| |+|||-.....
T Consensus 11 ~eAI~al~e-r~GsS~~AI~k 30 (75)
T d1ghca_ 11 TKAVSASKE-RKGLSLAALKK 30 (75)
T ss_dssp HHHHHHCSS-SSCCTTSSGGG
T ss_pred HHHHHHcCC-CCCcCHHHHHH
Confidence 477778888 99999876543
No 4
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.73 E-value=6.7 Score=26.50 Aligned_cols=16 Identities=50% Similarity=0.576 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCCcc
Q 022825 247 ISALRALKEIRSGSSTV 263 (291)
Q Consensus 247 ~~al~~~~~~~~~sst~ 263 (291)
++|+.+|.| |+|||-.
T Consensus 10 ~eAI~al~e-r~GsS~~ 25 (74)
T d1hsta_ 10 AAAIRAEKS-RGGSSRQ 25 (74)
T ss_dssp HHHHHTCCC-SSCEEHH
T ss_pred HHHHHHcCC-CCCcCHH
Confidence 578888888 9999864
No 5
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=13.77 E-value=88 Score=22.61 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCCCH----------HHHHHHHHHHHHHHHhh
Q 022825 162 LPFIQRVLQQPFFTT----------DLIYRLVKQCEKMLDGL 193 (291)
Q Consensus 162 ~~fi~~V~~qpF~~~----------~~l~~Lv~~~E~l~~~~ 193 (291)
..-+++.+.||||.. ..|..-++.|+.+++.-
T Consensus 47 ARklqrFLsQpF~vaE~fTG~~G~~V~l~dTi~g~~~Il~G~ 88 (114)
T d1skye1 47 ARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGK 88 (114)
T ss_dssp HHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCceeceeecCCCeeEeeHHHHHHHHHHHhCCC
Confidence 344566789999864 35677788888877543
No 6
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=13.08 E-value=29 Score=23.39 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHhhhcCC
Q 022825 131 MVLLENYSALNYTGLVKILKKYDKRTGA 158 (291)
Q Consensus 131 l~~L~~Y~~LN~tg~~KILKK~DK~tg~ 158 (291)
-.+|+++..+|...-.|||+.|.|-.|.
T Consensus 39 ~~ll~RW~~v~K~~A~k~L~~FKKeig~ 66 (73)
T d1sfka_ 39 RAVLDRWRSVNKQTAMKHLLSFKKELGT 66 (73)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998765
No 7
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.49 E-value=1e+02 Score=22.40 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCCCH----------HHHHHHHHHHHHHHHh
Q 022825 162 LPFIQRVLQQPFFTT----------DLIYRLVKQCEKMLDG 192 (291)
Q Consensus 162 ~~fi~~V~~qpF~~~----------~~l~~Lv~~~E~l~~~ 192 (291)
..-+++.+.||||.. -.|..-++.|+.+++.
T Consensus 50 ARklqrfLsQpFfvae~fTg~~G~~V~l~dTi~g~~~Il~G 90 (118)
T d2jdid1 50 ARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAG 90 (118)
T ss_dssp HHHHHHHHCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcceeeeeecCCCcceecHHHHHHHHHHHhCC
Confidence 344566789999864 3566677778877654
No 8
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.49 E-value=16 Score=25.64 Aligned_cols=17 Identities=59% Similarity=0.718 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCCccc
Q 022825 247 ISALRALKEIRSGSSTVS 264 (291)
Q Consensus 247 ~~al~~~~~~~~~sst~~ 264 (291)
+.|+.+|+| |+|||...
T Consensus 14 ~eAI~~l~e-r~GsS~~a 30 (92)
T d1usta_ 14 IEGLTALKE-RKGSSRPA 30 (92)
T ss_dssp HHHHTTTTT-TSCEEHHH
T ss_pred HHHHHHcCC-CCCCCHHH
Confidence 478888888 99998643
No 9
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=75 Score=21.53 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 022825 119 KIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYD 153 (291)
Q Consensus 119 ~l~~~~~el~~el~~L~~Y~~LN~tg~~KILKK~D 153 (291)
.|..++....+....-....-|+.+.+++-+|||.
T Consensus 53 ~i~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~g 87 (89)
T d1etxa_ 53 LLDMVMQYTRGNATRAALMMGINRGTLRKKLKKYG 87 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHHHhC
Confidence 35666667777777777778899999999999984
No 10
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.86 E-value=2.1e+02 Score=24.57 Aligned_cols=34 Identities=15% Similarity=0.430 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Q 022825 76 SLLEDEMDKFNSFFVEKEE-----EYIIRLKELQDRVAN 109 (291)
Q Consensus 76 ~~L~~El~KVn~Fy~~ke~-----el~~rl~~L~~~i~~ 109 (291)
.....|++.+..||.++.. ++...++.|.+++.+
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~ 362 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQ 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 4557899999999976653 677777777766654
Done!