Query 022827
Match_columns 291
No_of_seqs 428 out of 2425
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0533 RRM motif-containing p 100.0 2.5E-30 5.4E-35 226.1 21.1 159 1-179 1-164 (243)
2 PLN03134 glycine-rich RNA-bind 99.9 1.9E-20 4.1E-25 153.6 15.2 83 96-178 32-115 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 9.2E-18 2E-22 156.1 15.7 82 97-178 192-276 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8E-17 1.7E-21 150.2 12.6 82 97-178 268-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 5E-17 1.1E-21 151.2 11.1 84 94-177 103-187 (346)
6 KOG0121 Nuclear cap-binding pr 99.7 3E-17 6.4E-22 128.2 7.3 80 96-175 34-114 (153)
7 PF00076 RRM_1: RNA recognitio 99.7 1.3E-16 2.7E-21 113.7 9.5 70 101-170 1-70 (70)
8 KOG0105 Alternative splicing f 99.7 1.7E-16 3.7E-21 131.3 11.2 77 96-174 4-80 (241)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.4E-16 3E-21 148.5 11.5 82 97-178 2-84 (352)
10 KOG0122 Translation initiation 99.7 1.6E-16 3.5E-21 136.6 9.6 81 97-177 188-269 (270)
11 KOG0113 U1 small nuclear ribon 99.7 7.3E-16 1.6E-20 135.9 11.1 101 95-195 98-199 (335)
12 KOG0107 Alternative splicing f 99.6 4.5E-16 9.7E-21 127.8 8.3 78 97-178 9-86 (195)
13 KOG4207 Predicted splicing fac 99.6 4.5E-16 9.7E-21 130.9 7.1 87 92-178 7-94 (256)
14 TIGR01648 hnRNP-R-Q heterogene 99.6 9.2E-15 2E-19 143.3 16.2 77 96-179 231-309 (578)
15 PF14259 RRM_6: RNA recognitio 99.6 4.3E-15 9.3E-20 106.4 9.2 70 101-170 1-70 (70)
16 KOG0130 RNA-binding protein RB 99.6 2.2E-15 4.8E-20 118.7 7.2 87 92-178 66-153 (170)
17 PLN03120 nucleic acid binding 99.6 1.1E-14 2.3E-19 128.5 11.6 78 97-177 3-80 (260)
18 KOG0149 Predicted RNA-binding 99.6 4.3E-15 9.2E-20 127.4 7.6 80 96-176 10-90 (247)
19 TIGR01645 half-pint poly-U bin 99.6 2.2E-14 4.7E-19 141.0 11.8 83 97-179 203-286 (612)
20 TIGR01645 half-pint poly-U bin 99.5 1.8E-14 3.8E-19 141.7 10.4 81 95-175 104-185 (612)
21 TIGR01628 PABP-1234 polyadenyl 99.5 2.3E-14 5.1E-19 141.9 11.3 80 99-178 1-81 (562)
22 KOG0125 Ataxin 2-binding prote 99.5 1.7E-14 3.7E-19 128.7 9.1 84 94-178 92-175 (376)
23 TIGR01648 hnRNP-R-Q heterogene 99.5 2.4E-14 5.2E-19 140.4 10.7 79 96-174 56-135 (578)
24 smart00362 RRM_2 RNA recogniti 99.5 5.4E-14 1.2E-18 99.1 9.5 72 100-172 1-72 (72)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.5 7.3E-14 1.6E-18 136.6 13.2 82 97-178 294-376 (509)
26 TIGR01622 SF-CC1 splicing fact 99.5 5.9E-14 1.3E-18 135.5 12.0 81 97-177 185-266 (457)
27 TIGR01622 SF-CC1 splicing fact 99.5 1E-13 2.2E-18 133.9 12.9 81 95-176 86-167 (457)
28 TIGR01628 PABP-1234 polyadenyl 99.5 6.4E-14 1.4E-18 138.8 11.5 83 96-178 283-365 (562)
29 PLN03213 repressor of silencin 99.5 4.7E-14 1E-18 131.7 9.6 80 96-178 8-89 (759)
30 PLN03121 nucleic acid binding 99.5 1.3E-13 2.8E-18 120.0 11.3 77 97-176 4-80 (243)
31 KOG0117 Heterogeneous nuclear 99.5 1E-13 2.2E-18 128.2 10.1 84 95-178 80-165 (506)
32 KOG0148 Apoptosis-promoting RN 99.5 1.3E-13 2.8E-18 120.3 10.2 79 96-179 162-240 (321)
33 smart00360 RRM RNA recognition 99.5 1.6E-13 3.5E-18 96.2 8.9 70 103-172 1-71 (71)
34 KOG0131 Splicing factor 3b, su 99.5 4.6E-14 1E-18 116.6 6.2 80 96-175 7-87 (203)
35 KOG0145 RNA-binding protein EL 99.5 1.4E-13 2.9E-18 119.6 9.3 86 94-179 37-123 (360)
36 KOG0117 Heterogeneous nuclear 99.5 7.3E-14 1.6E-18 129.1 7.4 97 76-179 234-333 (506)
37 cd00590 RRM RRM (RNA recogniti 99.5 5.3E-13 1.1E-17 94.5 10.2 74 100-173 1-74 (74)
38 KOG0114 Predicted RNA-binding 99.5 2.4E-13 5.1E-18 102.7 8.5 82 95-178 15-96 (124)
39 COG0724 RNA-binding proteins ( 99.5 3.1E-13 6.6E-18 119.0 10.4 79 98-176 115-194 (306)
40 KOG4212 RNA-binding protein hn 99.5 7.6E-13 1.6E-17 122.1 12.4 82 95-176 41-123 (608)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 5.9E-13 1.3E-17 129.6 11.7 80 95-178 272-352 (481)
42 KOG0126 Predicted RNA-binding 99.4 1.5E-14 3.3E-19 119.4 0.1 81 97-177 34-115 (219)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 5E-13 1.1E-17 130.1 10.6 76 97-177 1-78 (481)
44 KOG0148 Apoptosis-promoting RN 99.4 3.1E-13 6.7E-18 118.0 7.2 82 98-179 62-144 (321)
45 KOG0127 Nucleolar protein fibr 99.4 7.9E-13 1.7E-17 124.9 9.8 84 96-179 290-380 (678)
46 KOG0108 mRNA cleavage and poly 99.4 8.8E-13 1.9E-17 125.0 8.4 81 99-179 19-100 (435)
47 KOG0145 RNA-binding protein EL 99.4 2.6E-12 5.7E-17 111.7 10.3 84 94-177 274-358 (360)
48 KOG0111 Cyclophilin-type pepti 99.4 3.2E-13 7E-18 114.7 4.4 82 97-178 9-91 (298)
49 KOG0144 RNA-binding protein CU 99.4 6.4E-13 1.4E-17 122.4 6.2 86 97-182 123-211 (510)
50 KOG0415 Predicted peptidyl pro 99.4 6.9E-13 1.5E-17 119.6 5.9 85 94-178 235-320 (479)
51 KOG0144 RNA-binding protein CU 99.4 1.4E-12 3E-17 120.3 7.5 85 96-180 32-120 (510)
52 PF13893 RRM_5: RNA recognitio 99.3 9.3E-12 2E-16 85.3 8.1 56 115-174 1-56 (56)
53 KOG0127 Nucleolar protein fibr 99.3 5.7E-12 1.2E-16 119.2 8.9 82 97-178 116-197 (678)
54 KOG0146 RNA-binding protein ET 99.3 1.9E-12 4.2E-17 112.9 5.3 83 96-178 283-366 (371)
55 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.7E-16 88.8 8.4 61 112-172 2-70 (70)
56 KOG0109 RNA-binding protein LA 99.3 5.8E-12 1.2E-16 111.1 6.2 73 99-178 3-75 (346)
57 KOG0147 Transcriptional coacti 99.3 8.5E-12 1.8E-16 118.3 6.5 82 100-181 280-362 (549)
58 KOG0116 RasGAP SH3 binding pro 99.2 6.4E-11 1.4E-15 111.8 12.1 80 97-177 287-367 (419)
59 KOG0109 RNA-binding protein LA 99.2 1.1E-11 2.4E-16 109.3 5.6 77 95-178 75-151 (346)
60 KOG0132 RNA polymerase II C-te 99.2 1.6E-10 3.6E-15 113.2 12.8 76 97-177 420-495 (894)
61 KOG0124 Polypyrimidine tract-b 99.2 1.1E-11 2.4E-16 112.3 4.4 77 97-173 112-189 (544)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.2 6.1E-11 1.3E-15 116.0 9.7 72 97-174 174-257 (509)
63 KOG0123 Polyadenylate-binding 99.2 5.9E-11 1.3E-15 111.4 8.9 78 100-179 78-155 (369)
64 KOG4206 Spliceosomal protein s 99.1 1.5E-10 3.2E-15 99.2 8.6 85 94-180 5-93 (221)
65 KOG0131 Splicing factor 3b, su 99.1 1.3E-10 2.8E-15 96.4 6.6 85 94-178 92-178 (203)
66 KOG4208 Nucleolar RNA-binding 99.1 3.1E-10 6.6E-15 95.9 8.3 85 93-177 44-130 (214)
67 KOG4454 RNA binding protein (R 99.1 5.9E-11 1.3E-15 101.0 3.0 94 93-187 4-97 (267)
68 KOG0153 Predicted RNA-binding 99.1 4.6E-10 1E-14 101.3 8.5 80 92-176 222-302 (377)
69 KOG4212 RNA-binding protein hn 99.1 3.6E-10 7.7E-15 104.7 7.4 77 94-174 532-608 (608)
70 KOG0110 RNA-binding protein (R 99.1 5E-10 1.1E-14 109.1 8.7 78 98-175 515-596 (725)
71 KOG0123 Polyadenylate-binding 99.0 5.6E-10 1.2E-14 104.8 8.2 77 99-180 2-78 (369)
72 KOG0124 Polypyrimidine tract-b 99.0 6.8E-10 1.5E-14 100.8 7.8 84 97-180 209-293 (544)
73 KOG4661 Hsp27-ERE-TATA-binding 99.0 8.5E-10 1.8E-14 105.1 7.9 83 97-179 404-487 (940)
74 KOG4205 RNA-binding protein mu 99.0 4.1E-10 8.9E-15 102.7 5.2 84 97-181 5-89 (311)
75 KOG0146 RNA-binding protein ET 98.9 1.2E-09 2.6E-14 95.6 5.5 83 97-179 18-103 (371)
76 KOG0110 RNA-binding protein (R 98.9 8E-10 1.7E-14 107.7 4.8 84 96-179 611-695 (725)
77 KOG1548 Transcription elongati 98.9 3.4E-09 7.4E-14 95.7 8.3 82 95-176 131-220 (382)
78 KOG1457 RNA binding protein (c 98.9 8E-09 1.7E-13 88.4 10.0 83 97-179 33-120 (284)
79 KOG4209 Splicing factor RNPS1, 98.9 4.3E-09 9.4E-14 92.6 6.8 82 95-177 98-180 (231)
80 KOG1995 Conserved Zn-finger pr 98.8 1.3E-08 2.9E-13 92.5 9.3 85 95-179 63-156 (351)
81 KOG4205 RNA-binding protein mu 98.8 4.3E-09 9.2E-14 96.1 6.1 86 97-183 96-182 (311)
82 KOG0106 Alternative splicing f 98.7 8.1E-09 1.7E-13 89.2 4.3 71 99-176 2-72 (216)
83 PF04059 RRM_2: RNA recognitio 98.6 2.5E-07 5.4E-12 70.4 9.4 78 99-176 2-86 (97)
84 PF13865 FoP_duplication: C-te 98.6 1.3E-07 2.8E-12 68.5 7.0 20 269-288 37-56 (74)
85 KOG4660 Protein Mei2, essentia 98.6 3.2E-08 6.9E-13 94.5 4.6 71 96-170 73-143 (549)
86 KOG4211 Splicing factor hnRNP- 98.6 2.6E-07 5.6E-12 87.2 9.2 81 95-178 7-87 (510)
87 KOG0226 RNA-binding proteins [ 98.6 9E-08 2E-12 83.4 5.6 81 95-175 187-268 (290)
88 KOG0151 Predicted splicing reg 98.5 1.5E-07 3.2E-12 92.0 7.0 83 95-177 171-257 (877)
89 KOG1190 Polypyrimidine tract-b 98.4 1E-06 2.2E-11 81.5 9.1 78 98-179 297-375 (492)
90 KOG0105 Alternative splicing f 98.4 3.1E-06 6.8E-11 70.7 11.1 64 97-166 114-177 (241)
91 KOG4211 Splicing factor hnRNP- 98.4 7.6E-07 1.6E-11 84.1 7.3 79 96-175 101-180 (510)
92 PF08777 RRM_3: RNA binding mo 98.4 5.6E-07 1.2E-11 69.8 5.4 75 98-177 1-80 (105)
93 PF11608 Limkain-b1: Limkain b 98.4 2.1E-06 4.5E-11 62.9 7.4 70 99-177 3-77 (90)
94 KOG0120 Splicing factor U2AF, 98.3 8.4E-07 1.8E-11 85.3 4.9 84 96-179 287-371 (500)
95 KOG1457 RNA binding protein (c 98.2 1.6E-06 3.5E-11 74.4 4.9 70 93-165 205-274 (284)
96 KOG0106 Alternative splicing f 98.2 8.9E-07 1.9E-11 76.6 3.2 74 94-174 95-168 (216)
97 KOG4206 Spliceosomal protein s 98.2 5.4E-06 1.2E-10 71.4 7.9 78 94-175 142-220 (221)
98 KOG0147 Transcriptional coacti 98.2 5.7E-07 1.2E-11 85.9 1.8 80 95-175 176-256 (549)
99 KOG4307 RNA binding protein RB 98.2 1.9E-05 4.1E-10 77.5 11.9 75 99-173 868-943 (944)
100 KOG4849 mRNA cleavage factor I 98.1 5.1E-06 1.1E-10 75.6 6.6 76 99-174 81-159 (498)
101 KOG1456 Heterogeneous nuclear 98.0 4E-05 8.7E-10 70.4 9.9 88 91-182 280-368 (494)
102 KOG1548 Transcription elongati 97.9 4.5E-05 9.8E-10 69.4 8.7 80 95-177 262-352 (382)
103 KOG4210 Nuclear localization s 97.9 6.6E-06 1.4E-10 74.8 2.5 81 97-178 183-265 (285)
104 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.6E-10 70.3 6.3 81 97-177 113-203 (480)
105 KOG1855 Predicted RNA-binding 97.9 1.5E-05 3.2E-10 74.4 4.2 78 96-173 229-320 (484)
106 KOG2202 U2 snRNP splicing fact 97.8 1.1E-05 2.5E-10 70.6 2.9 66 113-178 83-149 (260)
107 KOG1190 Polypyrimidine tract-b 97.8 5.5E-05 1.2E-09 70.3 6.9 79 96-177 412-491 (492)
108 KOG1365 RNA-binding protein Fu 97.7 4.5E-05 9.7E-10 70.3 5.3 80 96-175 278-360 (508)
109 KOG2314 Translation initiation 97.7 0.00019 4.2E-09 69.1 9.7 80 96-175 56-142 (698)
110 PF14605 Nup35_RRM_2: Nup53/35 97.7 8E-05 1.7E-09 50.3 5.2 52 99-156 2-53 (53)
111 PF08952 DUF1866: Domain of un 97.6 0.00023 4.9E-09 57.9 6.9 86 82-179 15-109 (146)
112 KOG1456 Heterogeneous nuclear 97.5 0.00051 1.1E-08 63.4 9.2 81 94-178 116-200 (494)
113 KOG2416 Acinus (induces apopto 97.5 8.7E-05 1.9E-09 71.8 4.1 83 91-178 437-523 (718)
114 PF07078 FYTT: Forty-two-three 97.5 3.8E-05 8.3E-10 68.6 1.2 19 2-20 26-44 (316)
115 KOG3152 TBP-binding protein, a 97.5 0.00012 2.6E-09 64.3 4.1 72 97-168 73-157 (278)
116 KOG0129 Predicted RNA-binding 97.5 0.00033 7.1E-09 67.0 7.3 68 91-158 363-432 (520)
117 KOG0128 RNA-binding protein SA 97.3 0.0001 2.2E-09 74.1 1.6 81 98-178 736-816 (881)
118 KOG0129 Predicted RNA-binding 97.2 0.00099 2.2E-08 63.8 7.7 64 96-160 257-327 (520)
119 KOG0120 Splicing factor U2AF, 97.2 0.00086 1.9E-08 64.9 7.3 63 115-177 426-492 (500)
120 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0025 5.4E-08 48.9 7.5 76 97-174 5-89 (100)
121 PF10309 DUF2414: Protein of u 97.0 0.0042 9.1E-08 43.2 7.1 55 98-159 5-62 (62)
122 KOG4307 RNA binding protein RB 96.9 0.0006 1.3E-08 67.3 3.3 81 94-174 430-511 (944)
123 KOG2193 IGF-II mRNA-binding pr 96.9 0.00088 1.9E-08 62.7 3.8 74 99-178 2-77 (584)
124 KOG4676 Splicing factor, argin 96.9 0.0017 3.7E-08 60.3 5.3 75 99-174 8-86 (479)
125 KOG1996 mRNA splicing factor [ 96.8 0.0037 8E-08 56.1 7.1 63 113-175 301-365 (378)
126 KOG1365 RNA-binding protein Fu 96.8 0.0045 9.7E-08 57.5 7.8 76 98-174 161-240 (508)
127 KOG0115 RNA-binding protein p5 96.8 0.0014 3E-08 57.7 3.9 63 99-161 32-94 (275)
128 KOG0128 RNA-binding protein SA 96.8 7.5E-05 1.6E-09 75.0 -4.5 70 96-165 665-735 (881)
129 PF08675 RNA_bind: RNA binding 96.5 0.0079 1.7E-07 44.2 5.7 56 98-161 9-64 (87)
130 KOG0112 Large RNA-binding prot 96.4 0.0044 9.6E-08 63.0 5.2 81 95-180 452-534 (975)
131 KOG2068 MOT2 transcription fac 96.2 0.0016 3.5E-08 59.4 0.6 80 99-178 78-164 (327)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0088 1.9E-07 50.7 4.5 80 97-176 6-97 (176)
133 PF03880 DbpA: DbpA RNA bindin 96.0 0.03 6.5E-07 40.3 6.5 67 100-174 2-74 (74)
134 KOG2591 c-Mpl binding protein, 96.0 0.01 2.2E-07 57.5 5.0 73 95-173 172-248 (684)
135 KOG2135 Proteins containing th 95.9 0.0053 1.1E-07 58.4 2.9 74 99-178 373-447 (526)
136 KOG0112 Large RNA-binding prot 95.5 0.0032 6.9E-08 64.0 -0.5 79 96-174 370-448 (975)
137 PF15023 DUF4523: Protein of u 95.4 0.084 1.8E-06 42.8 7.4 71 96-173 84-158 (166)
138 PF04847 Calcipressin: Calcipr 95.3 0.052 1.1E-06 46.3 6.5 63 111-178 8-72 (184)
139 PF13865 FoP_duplication: C-te 95.3 0.035 7.5E-07 40.1 4.6 17 272-288 55-71 (74)
140 KOG4660 Protein Mei2, essentia 95.0 0.034 7.3E-07 54.0 4.9 84 95-178 385-474 (549)
141 KOG2253 U1 snRNP complex, subu 94.8 0.02 4.3E-07 56.7 2.7 73 93-173 35-107 (668)
142 PRK11634 ATP-dependent RNA hel 94.7 0.85 1.8E-05 46.3 14.3 68 100-175 488-561 (629)
143 KOG2318 Uncharacterized conser 94.3 0.19 4.1E-06 49.3 8.0 79 95-173 171-302 (650)
144 PF07576 BRAP2: BRCA1-associat 94.1 0.53 1.2E-05 36.7 8.8 69 97-166 11-81 (110)
145 PF11767 SET_assoc: Histone ly 93.9 0.3 6.4E-06 34.5 6.3 55 109-171 11-65 (66)
146 KOG4574 RNA-binding protein (c 93.7 0.054 1.2E-06 55.1 3.2 74 100-178 300-375 (1007)
147 KOG4210 Nuclear localization s 93.3 0.051 1.1E-06 49.6 2.2 83 96-178 86-169 (285)
148 KOG4285 Mitotic phosphoprotein 93.0 0.28 6.2E-06 44.4 6.4 74 98-178 197-271 (350)
149 KOG0921 Dosage compensation co 92.6 0.32 6.9E-06 50.4 6.7 9 224-232 1232-1240(1282)
150 KOG3973 Uncharacterized conser 91.9 0.55 1.2E-05 43.4 6.8 8 244-251 439-446 (465)
151 KOG0804 Cytoplasmic Zn-finger 91.4 0.88 1.9E-05 43.5 7.8 69 97-166 73-142 (493)
152 KOG4019 Calcineurin-mediated s 87.8 0.46 1E-05 40.0 2.7 77 97-178 9-91 (193)
153 PF03468 XS: XS domain; Inter 84.4 1.9 4.1E-05 33.9 4.5 55 100-156 10-74 (116)
154 KOG4483 Uncharacterized conser 84.2 2.5 5.4E-05 39.9 5.8 55 98-158 391-446 (528)
155 KOG2193 IGF-II mRNA-binding pr 83.6 0.058 1.3E-06 50.9 -5.0 80 97-178 79-158 (584)
156 KOG4676 Splicing factor, argin 83.0 0.18 3.9E-06 47.2 -2.1 73 99-175 152-224 (479)
157 KOG4454 RNA binding protein (R 79.3 0.45 9.8E-06 41.4 -0.8 76 96-171 78-157 (267)
158 KOG4410 5-formyltetrahydrofola 77.7 5.2 0.00011 36.2 5.4 47 98-149 330-377 (396)
159 PF10567 Nab6_mRNP_bdg: RNA-re 76.7 6.3 0.00014 35.8 5.6 78 98-175 15-106 (309)
160 KOG2295 C2H2 Zn-finger protein 76.0 0.41 9E-06 46.8 -2.1 72 96-167 229-301 (648)
161 KOG3262 H/ACA small nucleolar 75.0 40 0.00086 28.7 9.5 17 113-129 89-105 (215)
162 KOG4365 Uncharacterized conser 74.8 0.46 9.9E-06 45.2 -2.1 80 98-178 3-83 (572)
163 KOG3262 H/ACA small nucleolar 74.3 54 0.0012 27.9 12.1 9 143-151 82-90 (215)
164 PF00403 HMA: Heavy-metal-asso 72.2 15 0.00032 24.7 5.6 54 100-158 1-58 (62)
165 COG5638 Uncharacterized conser 70.4 17 0.00037 34.7 7.0 81 95-175 143-296 (622)
166 COG0724 RNA-binding proteins ( 70.3 5.2 0.00011 34.3 3.6 63 94-156 221-284 (306)
167 PF15513 DUF4651: Domain of un 68.3 13 0.00028 25.8 4.3 22 113-134 9-30 (62)
168 KOG1295 Nonsense-mediated deca 67.6 5.8 0.00012 37.3 3.4 68 97-164 6-77 (376)
169 PRK10629 EnvZ/OmpR regulon mod 67.6 47 0.001 26.5 8.2 72 97-175 34-109 (127)
170 smart00596 PRE_C2HC PRE_C2HC d 64.8 9.6 0.00021 27.0 3.3 59 113-174 2-62 (69)
171 PF07530 PRE_C2HC: Associated 63.9 16 0.00035 25.8 4.4 59 113-174 2-62 (68)
172 KOG4213 RNA-binding protein La 62.0 9.4 0.0002 32.3 3.3 68 99-172 112-182 (205)
173 PRK14548 50S ribosomal protein 60.4 30 0.00066 25.5 5.4 57 101-159 23-81 (84)
174 TIGR03636 L23_arch archaeal ri 60.0 34 0.00073 24.8 5.5 56 101-158 16-73 (77)
175 PRK11901 hypothetical protein; 56.2 41 0.00089 31.2 6.7 62 97-163 244-308 (327)
176 COG2608 CopZ Copper chaperone 55.3 39 0.00084 23.7 5.2 45 99-148 4-48 (71)
177 PF02714 DUF221: Domain of unk 54.4 14 0.00031 33.8 3.6 37 142-180 1-37 (325)
178 KOG4008 rRNA processing protei 52.8 12 0.00026 33.0 2.6 34 95-128 37-70 (261)
179 PRK11230 glycolate oxidase sub 49.2 51 0.0011 32.6 6.7 62 99-160 190-255 (499)
180 PF05918 API5: Apoptosis inhib 48.5 5.8 0.00013 39.5 0.0 8 154-161 429-436 (556)
181 PF14893 PNMA: PNMA 48.2 20 0.00043 33.5 3.4 83 96-182 16-102 (331)
182 PF07292 NID: Nmi/IFP 35 domai 44.0 40 0.00087 25.1 3.9 24 96-119 50-73 (88)
183 KOG2891 Surface glycoprotein [ 43.0 53 0.0012 29.8 5.1 69 96-164 147-247 (445)
184 CHL00123 rps6 ribosomal protei 42.3 1.5E+02 0.0032 22.3 7.8 68 100-171 10-92 (97)
185 COG5193 LHP1 La protein, small 38.9 14 0.0003 35.1 0.9 59 99-157 175-244 (438)
186 PF09707 Cas_Cas2CT1978: CRISP 35.4 80 0.0017 23.4 4.3 50 96-147 23-72 (86)
187 PF07292 NID: Nmi/IFP 35 domai 35.2 60 0.0013 24.2 3.6 34 142-175 1-35 (88)
188 PF07237 DUF1428: Protein of u 35.0 1.6E+02 0.0036 22.6 6.1 46 114-159 24-85 (103)
189 PF12643 MazG-like: MazG-like 34.3 13 0.00028 28.3 -0.1 16 1-16 51-69 (98)
190 PTZ00191 60S ribosomal protein 33.7 1.2E+02 0.0026 24.8 5.4 53 102-156 85-139 (145)
191 KOG3702 Nuclear polyadenylated 33.3 19 0.00041 36.3 0.9 72 99-171 512-584 (681)
192 COG0030 KsgA Dimethyladenosine 33.2 63 0.0014 29.1 4.1 34 98-131 95-128 (259)
193 PF03439 Spt5-NGN: Early trans 32.9 81 0.0018 22.9 4.0 36 124-163 33-68 (84)
194 TIGR00587 nfo apurinic endonuc 32.3 91 0.002 27.9 5.1 72 98-174 137-216 (274)
195 PLN02805 D-lactate dehydrogena 32.3 1.2E+02 0.0026 30.4 6.4 51 110-160 278-332 (555)
196 TIGR00387 glcD glycolate oxida 31.8 1.2E+02 0.0026 29.0 6.1 63 98-160 131-198 (413)
197 PF15063 TC1: Thyroid cancer p 31.2 35 0.00075 24.6 1.7 28 99-126 26-53 (79)
198 cd06404 PB1_aPKC PB1 domain is 31.0 2.2E+02 0.0047 21.0 7.7 57 100-161 10-70 (83)
199 PF11411 DNA_ligase_IV: DNA li 30.8 37 0.00081 20.9 1.5 16 108-123 19-34 (36)
200 COG4907 Predicted membrane pro 29.9 50 0.0011 32.2 3.0 10 150-159 526-535 (595)
201 KOG2187 tRNA uracil-5-methyltr 29.1 47 0.001 32.8 2.8 40 139-178 63-102 (534)
202 PF13037 DUF3898: Domain of un 26.9 1.6E+02 0.0035 21.9 4.5 50 111-160 32-90 (91)
203 PF11823 DUF3343: Protein of u 25.6 82 0.0018 22.1 2.9 24 141-164 3-26 (73)
204 KOG0226 RNA-binding proteins [ 25.6 29 0.00064 31.1 0.6 78 95-172 93-173 (290)
205 smart00666 PB1 PB1 domain. Pho 25.4 2.4E+02 0.0053 19.7 6.9 55 101-160 12-69 (81)
206 PRK06958 single-stranded DNA-b 24.7 1.7E+02 0.0038 24.8 5.1 12 98-109 5-16 (182)
207 PF08156 NOP5NT: NOP5NT (NUC12 24.4 25 0.00054 24.7 -0.0 39 113-160 27-65 (67)
208 COG0079 HisC Histidinol-phosph 24.2 1.2E+02 0.0027 28.4 4.6 51 97-157 145-199 (356)
209 PF14581 SseB_C: SseB protein 24.0 1.6E+02 0.0034 22.2 4.5 81 96-176 3-90 (108)
210 cd04904 ACT_AAAH ACT domain of 24.0 2.6E+02 0.0056 19.5 7.7 49 112-161 14-65 (74)
211 cd04880 ACT_AAAH-PDT-like ACT 23.7 2.5E+02 0.0054 19.3 6.5 50 112-161 13-66 (75)
212 PF05189 RTC_insert: RNA 3'-te 23.3 1.7E+02 0.0037 21.9 4.5 48 100-147 12-65 (103)
213 PRK05772 translation initiatio 23.3 2.1E+02 0.0046 27.1 5.9 51 110-160 3-57 (363)
214 PF08599 Nbs1_C: DNA damage re 23.1 29 0.00062 24.1 0.1 13 278-290 35-47 (65)
215 COG3254 Uncharacterized conser 23.0 2.9E+02 0.0063 21.3 5.5 42 113-156 27-68 (105)
216 cd00027 BRCT Breast Cancer Sup 22.8 2.2E+02 0.0047 18.2 5.3 27 99-125 2-28 (72)
217 cd04908 ACT_Bt0572_1 N-termina 22.6 2.5E+02 0.0054 18.8 8.2 44 112-158 15-59 (66)
218 PRK10905 cell division protein 22.3 2E+02 0.0044 26.7 5.3 59 99-162 248-309 (328)
219 COG1512 Beta-propeller domains 22.3 1.3E+02 0.0027 27.4 4.0 36 99-134 67-107 (271)
220 PRK11558 putative ssRNA endonu 22.0 1.4E+02 0.0031 22.6 3.7 52 96-149 25-76 (97)
221 PHA01632 hypothetical protein 22.0 99 0.0021 21.0 2.5 21 101-121 19-39 (64)
222 COG4010 Uncharacterized protei 22.0 2.6E+02 0.0057 22.9 5.3 46 105-159 118-163 (170)
223 KOG1232 Proteins containing th 21.8 1.1E+02 0.0024 29.3 3.6 52 105-156 231-286 (511)
224 cd06405 PB1_Mekk2_3 The PB1 do 21.0 3.3E+02 0.0072 19.7 8.0 62 105-174 15-77 (79)
225 PF00398 RrnaAD: Ribosomal RNA 20.9 86 0.0019 27.9 2.8 24 97-120 96-119 (262)
226 PTZ00338 dimethyladenosine tra 20.9 88 0.0019 28.6 2.8 23 100-122 103-125 (294)
227 COG4733 Phage-related protein, 20.8 89 0.0019 32.8 3.0 67 99-172 176-244 (952)
No 1
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=226.12 Aligned_cols=159 Identities=44% Similarity=0.698 Sum_probs=114.8
Q ss_pred CCCcCCCChHHHHHhcccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCccccccccccCCCCCC
Q 022827 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRG-PLS-NARPSSYTIAKSFRRTRNFPW 78 (291)
Q Consensus 1 m~~~ld~sLddii~~~~~~~~~~~~~~~~rg~gr~rg~~~~~~~~~g~g~~r~~-~~~-~~R~~~~~~~~~~~~~~~~~~ 78 (291)
|++.|||||||||+++++. + +-+..++..++.++ ..++.+|.|+. ... ..+. ..+..|
T Consensus 1 ms~~ld~sLd~iI~~~r~r--~--G~g~~r~~~r~~gg-----~~~~~~psR~~g~~r~~~~~-----------~~~~~w 60 (243)
T KOG0533|consen 1 MSDSLDMSLDDIIKSNRKR--G--GVGGKRGIKRRSGG-----QNRGRGPSRRTGKPRAQTRG-----------GIDGKW 60 (243)
T ss_pred CcchhhhhHHHHHHhcccc--C--CcCccccccccccC-----CccCCCCccccCcccccccC-----------CCCCcc
Confidence 8999999999999999661 1 11111111111111 02223344441 100 1111 047889
Q ss_pred Cc--hhhhhhhhhcCC-CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHH
Q 022827 79 QH--DLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAA 155 (291)
Q Consensus 79 ~~--d~~~~~~~~~~~-~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~A 155 (291)
+| ++|......... ......++|+|.|||+.|+++||++||.+|++++.+.|+++++|.+.|+|-|+|...++|++|
T Consensus 61 ~~~~~v~~~~~~~~~~~~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~a 140 (243)
T KOG0533|consen 61 QHDRDVFRSAKRLGAVGINETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERA 140 (243)
T ss_pred cchHHHHhcccccccccccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHH
Confidence 99 666655432111 133345899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCCeeeEEEEecCCCC
Q 022827 156 LKRYNNVLLDGKPMKIEVVGTNAE 179 (291)
Q Consensus 156 i~~lng~~l~g~~i~V~~a~~~~~ 179 (291)
|+.||++.|+|++|+|+++.+...
T Consensus 141 vk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 141 VKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred HHHhcCcccCCceeeeEEecCccc
Confidence 999999999999999999876654
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.9e-20 Score=153.58 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+++|||.|||+++||++|+++|++||+|++|.|+.|+ ++++++||||+|.+.++|++||+.||++.|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
..++
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7554
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=9.2e-18 Score=156.14 Aligned_cols=82 Identities=32% Similarity=0.583 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCC--eeeEEEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g--~~i~V~~ 173 (291)
..++|||.|||+.+||++|+++|++||+|+.|.|+.++ ++++++||||+|.+.++|++||+.||++.|.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998 99999999999999999999999999999876 6888888
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 77543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=8e-17 Score=150.18 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+.+|||.|||+++++++|+++|++||.|.+|.|++|. ++.++|||||+|.+.++|.+||+.||+..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999 99999999999999999999999999999999999999988
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 764
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=5e-17 Score=151.23 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.....++|||.|||+++||++|+++|++||+|++|+|+.|+ ++++++||||+|.++++|++||+.||+++|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34577899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCC
Q 022827 173 VVGTN 177 (291)
Q Consensus 173 ~a~~~ 177 (291)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88653
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3e-17 Score=128.18 Aligned_cols=80 Identities=33% Similarity=0.504 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+++|||+||++.|+|+.|.+||+.||+|+.|.+-.|+ +..+.|||||+|.+.++|+.||+-++++.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 478999999999999999999999999999999999999 8899999999999999999999999999999999999985
Q ss_pred c
Q 022827 175 G 175 (291)
Q Consensus 175 ~ 175 (291)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.3e-16 Score=113.65 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
|||+|||+++|+++|+++|++||.|..+.|..+.++.++++|||+|.+.++|++|++.||+..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999885
No 8
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.7e-16 Score=131.28 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||+|||.++.|.||++||.+||.|..|.|...+ ....||||+|+++.+|+.||..-++..++++.|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 357899999999999999999999999999999886543 23569999999999999999999999999999999974
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.4e-16 Score=148.54 Aligned_cols=82 Identities=32% Similarity=0.464 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+.++|||+|||+.++|++|+++|++||+|.+|.|+.++ +++++|||||+|.+.++|++||+.||+..|.++.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 56899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 554
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.6e-16 Score=136.61 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|.|.||+.+++|+||++||..||.|..|.|..|+ ||.++|||||+|.+.++|++||+.||++-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56799999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=7.3e-16 Score=135.88 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=95.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.++-+||||.-|+++++|..|+..|+.||+|+.|.|+.|+ |++++|||||+|+++.+.++|.+..++.+|+++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4677899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCCCCccccccCCCCCCCCc
Q 022827 174 VGTNAEIPLQARVNVTGVNGRR 195 (291)
Q Consensus 174 a~~~~~~~~~~r~~~~g~~g~~ 195 (291)
-.....+-+.+|....|.++..
T Consensus 178 ERgRTvkgW~PRRLGGGLGg~r 199 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLGGGLGGRR 199 (335)
T ss_pred cccccccccccccccCCcCCcc
Confidence 9999988898988877777665
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.5e-16 Score=127.77 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
-.++|||+||+..+++.||+.+|..||+|..|.|..++ .|||||||+++.+|+.|+..|++..|+|..|.|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 46899999999999999999999999999999998764 89999999999999999999999999999999999886
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
.+
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 65
No 13
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=4.5e-16 Score=130.85 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=81.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
++.++.-++|.|-||.+-|+.++|..+|++||.|-+|.|..|+ |..++|||||.|....+|+.|+++|++.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4566777899999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|++|.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99987544
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=9.2e-15 Score=143.26 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~--G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...++|||.||++++|+++|+++|++| |+|++|.++ ++||||+|.+.++|++||+.||+.+|+++.|+|++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456799999999999999999999999 999999887 45999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022827 174 VGTNAE 179 (291)
Q Consensus 174 a~~~~~ 179 (291)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987653
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=4.3e-15 Score=106.36 Aligned_cols=70 Identities=33% Similarity=0.596 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
|||+|||+.+++++|.++|+.||.|..|.+..++++.++++|||+|.++++|++|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998888899999999999999999999999999999874
No 16
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.2e-15 Score=118.74 Aligned_cols=87 Identities=25% Similarity=0.388 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
|...-.+-.|||.++++.+||++|.+.|..||+|+.|.+..|+ ||..+|||+|+|++.++|++||+.+|+..|.+++|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3334456799999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|.|+-...
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99986553
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=128.48 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..++|||+|||+.+||++|+++|+.||+|.+|.|+.+.. +++||||+|.++++|+.|| .||+..|.++.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 357999999999999999999999999999999998863 4689999999999999999 5999999999999999764
Q ss_pred C
Q 022827 177 N 177 (291)
Q Consensus 177 ~ 177 (291)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=4.3e-15 Score=127.36 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..-++|||++|+|+++.++|+++|++||+|+++.|+.|+ ++++|||+||+|.+.++|.+|++. .+-.|+|++..+.|+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 355799999999999999999999999999999999999 999999999999999999999954 567899999888886
Q ss_pred cC
Q 022827 175 GT 176 (291)
Q Consensus 175 ~~ 176 (291)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 53
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=2.2e-14 Score=141.04 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||.||++++++++|+++|+.||.|++|.|..++ ++.++|||||+|.+.++|.+||+.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998 78899999999999999999999999999999999999988
Q ss_pred CCCC
Q 022827 176 TNAE 179 (291)
Q Consensus 176 ~~~~ 179 (291)
+.+.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6553
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=1.8e-14 Score=141.67 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....++|||+||++++++++|+++|++||+|++|.|+.|+ +++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3467899999999999999999999999999999999998 999999999999999999999999999999999999986
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.3e-14 Score=141.92 Aligned_cols=80 Identities=30% Similarity=0.438 Sum_probs=75.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~ 177 (291)
.+|||+|||+++||++|+++|++||+|.+|+|+.|. +++++|||||+|.+.++|++||+.||...|.+++|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999999999999 7999999999999999999999999999999999999998654
Q ss_pred C
Q 022827 178 A 178 (291)
Q Consensus 178 ~ 178 (291)
+
T Consensus 81 ~ 81 (562)
T TIGR01628 81 P 81 (562)
T ss_pred c
Confidence 4
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.7e-14 Score=128.71 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+..++|+|+|||+..-|-||+.+|++||.|.+|+|+.+.-| +|||+||+|++.+||++|-++||+..+.|++|.|..
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3455689999999999999999999999999999999998643 599999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
++.+.
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 88765
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=2.4e-14 Score=140.36 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC-CeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-g~~i~V~~a 174 (291)
...++|||+|||++++|++|+++|++||+|.+|+|+.|.++++++||||+|.+.++|++||+.||+.+|. ++.|.|.++
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4569999999999999999999999999999999999999999999999999999999999999998885 677666544
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=5.4e-14 Score=99.10 Aligned_cols=72 Identities=38% Similarity=0.657 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+|||.|||..+++++|+++|.+||+|..+.+..++ +.++++|||+|.+.++|+.|++.+++..+.++.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6778999999999999999999999999999998873
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=7.3e-14 Score=136.55 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.||+..|.++.|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999998 89999999999999999999999999999999999999986
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=5.9e-14 Score=135.52 Aligned_cols=81 Identities=30% Similarity=0.518 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||.|||+.+|+++|+++|+.||.|..|.|+.+. ++.+++||||+|.+.++|++||+.||+..|.+++|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998 77999999999999999999999999999999999999987
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
..
T Consensus 265 ~~ 266 (457)
T TIGR01622 265 DS 266 (457)
T ss_pred CC
Confidence 44
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=1e-13 Score=133.87 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....++|||.|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|| .|++..|.+++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 4467899999999999999999999999999999999998 8999999999999999999999 5899999999999987
Q ss_pred ecC
Q 022827 174 VGT 176 (291)
Q Consensus 174 a~~ 176 (291)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 653
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=6.4e-14 Score=138.79 Aligned_cols=83 Identities=31% Similarity=0.547 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||.||++.+|+++|+++|++||.|.+|.|+.+.++.++|||||+|.+.++|++||+.||+..|.|++|.|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
.+.
T Consensus 363 ~k~ 365 (562)
T TIGR01628 363 RKE 365 (562)
T ss_pred CcH
Confidence 754
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=4.7e-14 Score=131.71 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCH--HHHHHHHHHhCCceeCCeeeEEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR--SDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~--~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....+|||+||++.|+++||..+|..||.|..|.|+.. +| +|||||+|.+. +++.+||+.||+..|+|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35689999999999999999999999999999999933 66 89999999987 789999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
|++..
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 88653
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=119.98 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.+.+|||+||++.+||++|++||+.||+|.+|.|+.+. ...+||||+|.++++|+.|| .||+..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999884 44679999999999999999 8999999999999987653
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1e-13 Score=128.16 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCcee-CCeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL-DGKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l-~g~~i~V~ 172 (291)
...+|.|||+.||.++.|++|.-||++.|+|-+++|+.|+ +|.++|||||+|.+.++|++||+.||+++| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 3678999999999999999999999999999999999998 999999999999999999999999999988 58999998
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++..+.
T Consensus 160 ~Svan~ 165 (506)
T KOG0117|consen 160 VSVANC 165 (506)
T ss_pred Eeeecc
Confidence 877654
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.3e-13 Score=120.31 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+..|+|||+||+..+||++|+++|+.||+|.+|+|.++ +|||||.|++.|.|..||..+|+.++.|+.+++.|-+
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 48899999999999999999999999999999999998 8999999999999999999999999999999999987
Q ss_pred CCCC
Q 022827 176 TNAE 179 (291)
Q Consensus 176 ~~~~ 179 (291)
....
T Consensus 237 e~~~ 240 (321)
T KOG0148|consen 237 EGDD 240 (321)
T ss_pred cCCC
Confidence 6654
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.6e-13 Score=96.20 Aligned_cols=70 Identities=40% Similarity=0.654 Sum_probs=66.0
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 103 VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 103 V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
|.|||..+++++|+++|++||.|..+.|..++ ++.++++|||+|.+.++|..|++.|++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988 68899999999999999999999999999999998874
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.48 E-value=4.6e-14 Score=116.64 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
....||||+||+..++++.|++||-++|+|..+.|..|+ +...+|||||+|.++|+|+-||+.||.+.|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 467899999999999999999999999999999999999 8889999999999999999999999999999999999988
Q ss_pred c
Q 022827 175 G 175 (291)
Q Consensus 175 ~ 175 (291)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=119.61 Aligned_cols=86 Identities=31% Similarity=0.456 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
..+..+.|.|.-||..+|+++|+.||...|+|++|+++.|+ +|++.||+||.|.+++||++||..||+..|..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34566789999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.+..+
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998764
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.3e-14 Score=129.13 Aligned_cols=97 Identities=28% Similarity=0.402 Sum_probs=82.6
Q ss_pred CCCCchhhhhhhhhcCC---CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHH
Q 022827 76 FPWQHDLFEDSLRAAGI---SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152 (291)
Q Consensus 76 ~~~~~d~~~~~~~~~~~---~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A 152 (291)
.-|-|....++..+... ..+..-+.|||.||+.+|||+.|+++|++||.|..|+.+.| ||||.|.+.++|
T Consensus 234 klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~da 306 (506)
T KOG0117|consen 234 KLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDA 306 (506)
T ss_pred eecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHH
Confidence 34777766666543322 23455678999999999999999999999999999988866 999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEEEecCCCC
Q 022827 153 FAALKRYNNVLLDGKPMKIEVVGTNAE 179 (291)
Q Consensus 153 ~~Ai~~lng~~l~g~~i~V~~a~~~~~ 179 (291)
.+||+.+|+++|+|..|.|.||++...
T Consensus 307 vkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHHHhcCceecCceEEEEecCChhh
Confidence 999999999999999999999998764
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=5.3e-13 Score=94.48 Aligned_cols=74 Identities=39% Similarity=0.631 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
+|+|.|||+.+++++|+++|..||.|..+.+..++...++++|||+|.+.++|..|++.+++..++++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999888657789999999999999999999999999999999864
No 38
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.4e-13 Score=102.67 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+....|||.|||+.+|.+++.+||.+||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|++..++++.|.|-+-
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3567899999999999999999999999999999887665 33799999999999999999999999999999999887
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
++..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6544
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=3.1e-13 Score=119.00 Aligned_cols=79 Identities=32% Similarity=0.554 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.++|||+|||+++|+++|.++|.+||.|..|.|..++ ++.+++||||+|.+.++|..||+.+++..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999999999999999653
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=7.6e-13 Score=122.11 Aligned_cols=82 Identities=18% Similarity=0.397 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~-~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....+.+||+|||+++.|+||++||. +.|+|.+|.++.|.+++++|+|.|+|+++|.+++|++.||.+++++++|+|+.
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 33456799999999999999999995 79999999999999999999999999999999999999999999999999986
Q ss_pred ecC
Q 022827 174 VGT 176 (291)
Q Consensus 174 a~~ 176 (291)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=5.9e-13 Score=129.59 Aligned_cols=80 Identities=30% Similarity=0.337 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..++++|||+||++ .+|+++|++||+.||.|.+|.|+.++ ++||||+|.+.++|+.||+.||+..|.|++|+|++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34678999999998 69999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 86553
No 42
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.5e-14 Score=119.43 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+.-|||+|||+++||.||.-+|++||+|+.|.++.|+ ||+++||||+.|++..+..-|+..||+..|.++.|+|..+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56789999999999999999999999999999999999 99999999999999999999999999999999999998765
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=5e-13 Score=130.14 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh--CCceeCCeeeEEEEe
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIEVV 174 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~g~~i~V~~a 174 (291)
++++|||+|||++++|++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.| ++..|.|++|.|+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 4789999999999999999999999999999999865 689999999999999999875 678999999999998
Q ss_pred cCC
Q 022827 175 GTN 177 (291)
Q Consensus 175 ~~~ 177 (291)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.1e-13 Score=117.97 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=78.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
-..|||+.|..+++.++|++.|.+||+|.+++|++|. |+++|||+||.|.+.++|+.||..||+..|..+.|+..|++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999999999 999999999999999999999999999999999999999988
Q ss_pred CCC
Q 022827 177 NAE 179 (291)
Q Consensus 177 ~~~ 179 (291)
++.
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 773
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=7.9e-13 Score=124.92 Aligned_cols=84 Identities=32% Similarity=0.490 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHh-----CC-ceeCCee
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY-----NN-VLLDGKP 168 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~l-----ng-~~l~g~~ 168 (291)
....+|||.|||+++||++|+++|++||+|.++.|+.++ |++++|+|||.|.+..+|++||+.. .+ +.|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 345899999999999999999999999999999999999 9999999999999999999999876 23 6799999
Q ss_pred eEEEEecCCCC
Q 022827 169 MKIEVVGTNAE 179 (291)
Q Consensus 169 i~V~~a~~~~~ 179 (291)
|+|.++.+...
T Consensus 370 Lkv~~Av~Rke 380 (678)
T KOG0127|consen 370 LKVTLAVTRKE 380 (678)
T ss_pred EeeeeccchHH
Confidence 99999987764
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=8.8e-13 Score=125.05 Aligned_cols=81 Identities=16% Similarity=0.445 Sum_probs=78.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~ 177 (291)
+.|||+|||++++|++|.++|+..|.|.++++++|+ +|+++||+|++|.+.++|+.|++.||+.++.+++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999998766
Q ss_pred CC
Q 022827 178 AE 179 (291)
Q Consensus 178 ~~ 179 (291)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.6e-12 Score=111.68 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.....-.|||-||.++++|.-|++||..||.|..|+|++|. +.+.|||+||++.+.++|..||..||+..|.++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34456799999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred EecCC
Q 022827 173 VVGTN 177 (291)
Q Consensus 173 ~a~~~ 177 (291)
+...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87654
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.2e-13 Score=114.70 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=78.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.-.+|||++|..+|+|.-|...|-.||+|+.|.|..|. +.++++|+||+|...|+|.+||..||..+|.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999998 99999999999999999999999999999999999999998
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 765
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=6.4e-13 Score=122.45 Aligned_cols=86 Identities=28% Similarity=0.457 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCc-eeCC--eeeEEEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV-LLDG--KPMKIEV 173 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~-~l~g--~~i~V~~ 173 (291)
...+|||+-|+..+||.||+++|++||.|++|.|++|..+.++|||||.|.+.|.|..||+.||+. ++.| .+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999994 4555 5999999
Q ss_pred ecCCCCCcc
Q 022827 174 VGTNAEIPL 182 (291)
Q Consensus 174 a~~~~~~~~ 182 (291)
+.++.++..
T Consensus 203 ADtqkdk~~ 211 (510)
T KOG0144|consen 203 ADTQKDKDG 211 (510)
T ss_pred cccCCCchH
Confidence 988775543
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.9e-13 Score=119.58 Aligned_cols=85 Identities=20% Similarity=0.360 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
..++...|||.-|.+-||++||.-+|+.||.|.+|.|+.|+ |+.+..||||+|++.+++++|.-+|+++.|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35678899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++++-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987654
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.4e-12 Score=120.27 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCc-eeCC--eeeEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV-LLDG--KPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~-~l~g--~~i~V 171 (291)
....+|||+-||..++|.||++||++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+.+||+. +|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456799999999999999999999999999999999999 9999999999999999999999999985 4544 68999
Q ss_pred EEecCCCCC
Q 022827 172 EVVGTNAEI 180 (291)
Q Consensus 172 ~~a~~~~~~ 180 (291)
.++..+.+.
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 988766543
No 52
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=9.3e-12 Score=85.30 Aligned_cols=56 Identities=34% Similarity=0.535 Sum_probs=51.0
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 115 IRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 115 L~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
|.++|++||+|+.|.+..+. .++|||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998663 489999999999999999999999999999999986
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=5.7e-12 Score=119.21 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
+-.+|.|.||||.+...||+.+|+.||.|..|.|.....++-+|||||.|....+|.+||+.||+..|+|++|.|.||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 46799999999999999999999999999999999877888889999999999999999999999999999999999987
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 75
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.9e-12 Score=112.87 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
+.+|.|||-.||.+..+.||.++|-.||.|++.+|..|+ |..+|+|+||.|+++.+|++||..||+..|.-+.|+|++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 578999999999999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 7765
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=88.77 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=54.9
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCC-C--CCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 112 NDDIRELFS----EIGELKRYA-IHFDK-N--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 112 e~dL~~~F~----~~G~v~~v~-i~~d~-t--g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+++|+++|+ .||.|.+|. |+.++ + +.++||+||+|.+.++|.+|++.||+..+.++.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 999999995 66665 5 8899999999999999999999999999999999863
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=5.8e-12 Score=111.11 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
.+|||+|||..+++.+|+.||++||.|.+|.|+++ |+||..++...|+.||..||+.+|+|..|+|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 58999999999999999999999999999999955 99999999999999999999999999999999988773
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.25 E-value=8.5e-12 Score=118.27 Aligned_cols=82 Identities=30% Similarity=0.547 Sum_probs=77.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
.|||+||+++++|++|+.+|+.||.|..|.++.|. ||.++||+||+|.+.++|.+|+++||+.+|-|+.|+|.+++...
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 49999999999999999999999999999999998 99999999999999999999999999999999999999988766
Q ss_pred CCc
Q 022827 179 EIP 181 (291)
Q Consensus 179 ~~~ 181 (291)
...
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 544
No 58
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.24 E-value=6.4e-11 Score=111.83 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...+|||.|||+++++++|+++|..||+|+...|..-. .++..+|+||+|.+.++++.||++ +-..|+++.|.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999987776644 344449999999999999999976 5788999999999755
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 43
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=1.1e-11 Score=109.30 Aligned_cols=77 Identities=29% Similarity=0.423 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...+++|+|.||.+.++.++|++.|++||+|++|+|++ .|+||.|+..++|..||+.||+.+|+|++|+|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 44778999999999999999999999999999999995 49999999999999999999999999999999999
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
++..
T Consensus 148 tsrl 151 (346)
T KOG0109|consen 148 TSRL 151 (346)
T ss_pred cccc
Confidence 8775
No 60
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=1.6e-10 Score=113.21 Aligned_cols=76 Identities=30% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.++||||+.|+..|+|.||..+|++||+|.+|.++.. ++||||++.+..+|++||.+|+++.+..+.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 5679999999999999999999999999999999876 89999999999999999999999999999999999875
Q ss_pred C
Q 022827 177 N 177 (291)
Q Consensus 177 ~ 177 (291)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.1e-11 Score=112.28 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
--|+|||+.|.+++.|+.|+..|..||+|++|.+.+|+ |+++++||||+|+-+|.|+-|++.||+..|.|+.|+|-.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 35899999999999999999999999999999999999 999999999999999999999999999999999999974
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=6.1e-11 Score=115.98 Aligned_cols=72 Identities=15% Similarity=0.300 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhc------------CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEI------------GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~------------G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
...+|||+|||+.+|+++|++||.+| ..|..+.+.. .++||||+|.+.++|..|| .||++.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45789999999999999999999975 2344444443 4899999999999999999 6999999
Q ss_pred CCeeeEEEEe
Q 022827 165 DGKPMKIEVV 174 (291)
Q Consensus 165 ~g~~i~V~~a 174 (291)
.+++|+|...
T Consensus 248 ~g~~l~v~r~ 257 (509)
T TIGR01642 248 SNVFLKIRRP 257 (509)
T ss_pred eCceeEecCc
Confidence 9999999753
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.9e-11 Score=111.38 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=73.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCCC
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~~ 179 (291)
.|||.||++.++..+|.++|+.||+|.+|+|..+.++ ++|| ||+|+++++|++||+.||+..+.+++|.|-+......
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 3999999999999999999999999999999999988 8999 9999999999999999999999999999988776553
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.15 E-value=1.5e-10 Score=99.22 Aligned_cols=85 Identities=28% Similarity=0.523 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRE----LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~----~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
.+.+..||||.||+..+..++|+. ||++||.|..|... ++.+.+|-|||+|.+.+.|-.|+.+|+|..+-|++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 345566999999999999999887 99999999976655 456789999999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 022827 170 KIEVVGTNAEI 180 (291)
Q Consensus 170 ~V~~a~~~~~~ 180 (291)
+|++|..+...
T Consensus 83 riqyA~s~sdi 93 (221)
T KOG4206|consen 83 RIQYAKSDSDI 93 (221)
T ss_pred heecccCccch
Confidence 99999987643
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=1.3e-10 Score=96.40 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~-v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
..+.+..|||+||.+.++|..|.++|+.||.|.. -+|+++. |+.+++|+||.|.+.|.+.+||+.+|+..+..++|.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3456689999999999999999999999998874 4778888 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++..+.
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9987665
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=3.1e-10 Score=95.94 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~-G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
+.......+||..||..+.+.+|..+|.+| |.|..+++.+++ ||.+++||||+|++++.|+-|-+.||+..|.++-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 445566789999999999999999999988 778888887888 999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 022827 171 IEVVGTN 177 (291)
Q Consensus 171 V~~a~~~ 177 (291)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998776
No 67
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=5.9e-11 Score=101.00 Aligned_cols=94 Identities=22% Similarity=0.279 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+..+...||||.||...|+|+.|.|||-+.|+|.+|.|..++.+..+ ||||+|.++..+.-|++.+|+..|.+.+|+|.
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 44567789999999999999999999999999999999999888888 99999999999999999999999999999999
Q ss_pred EecCCCCCccccccC
Q 022827 173 VVGTNAEIPLQARVN 187 (291)
Q Consensus 173 ~a~~~~~~~~~~r~~ 187 (291)
+-......++-.+..
T Consensus 83 ~r~G~shapld~r~~ 97 (267)
T KOG4454|consen 83 LRCGNSHAPLDERVT 97 (267)
T ss_pred cccCCCcchhhhhcc
Confidence 988776666555543
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.6e-10 Score=101.32 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh-CCceeCCeeeE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMK 170 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~g~~i~ 170 (291)
++.+...++|||.+|...++|.||.++|.+||+|..|.|... +++|||+|.+.++|+.|.+++ |...|+|+.|+
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 455667789999999999999999999999999999999877 679999999999999988865 44678999999
Q ss_pred EEEecC
Q 022827 171 IEVVGT 176 (291)
Q Consensus 171 V~~a~~ 176 (291)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.05 E-value=3.6e-10 Score=104.68 Aligned_cols=77 Identities=27% Similarity=0.333 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.....|+|||.|||+++||+.|++-|.+||.|.++.|+. .+++++ .|.|.++++|+.|+..||+..|+|+.|+|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 456789999999999999999999999999999999843 466675 8999999999999999999999999999987
Q ss_pred e
Q 022827 174 V 174 (291)
Q Consensus 174 a 174 (291)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=5e-10 Score=109.12 Aligned_cols=78 Identities=32% Similarity=0.459 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC----CceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR----PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~----~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.++|||.||++++|.++|..+|...|.|.+|.|...+... +.||+||+|.++++|++|++.|+++.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3459999999999999999999999999999888776443 459999999999999999999999999999999999
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 88
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.6e-10 Score=104.85 Aligned_cols=77 Identities=30% Similarity=0.394 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
..|||+ ++|||.+|.++|+.+|+|.+|+|+.|. . +.|||||.|.++++|++||++||-..|.|++|+|.|+..++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 999999999999999999999999999 5 99999999999999999999999999999999999998776
Q ss_pred CC
Q 022827 179 EI 180 (291)
Q Consensus 179 ~~ 180 (291)
..
T Consensus 77 ~~ 78 (369)
T KOG0123|consen 77 SL 78 (369)
T ss_pred ce
Confidence 43
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=6.8e-10 Score=100.79 Aligned_cols=84 Identities=19% Similarity=0.339 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.-.+|||..++++++|+||+.+|+.||+|++|.+..+. .+.++||+||+|.+..+...||..||-..|.|+.|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 45799999999999999999999999999999999999 56789999999999999999999999999999999998777
Q ss_pred CCCCC
Q 022827 176 TNAEI 180 (291)
Q Consensus 176 ~~~~~ 180 (291)
+.+..
T Consensus 289 TPP~a 293 (544)
T KOG0124|consen 289 TPPDA 293 (544)
T ss_pred CCCch
Confidence 66543
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=8.5e-10 Score=105.05 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+..|||++|...|...||+.||++||.|+-.+|+.+. +--.++|+||++.+.++|.+||+.||.++|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45689999999999999999999999999999999987 66668999999999999999999999999999999999988
Q ss_pred CCCC
Q 022827 176 TNAE 179 (291)
Q Consensus 176 ~~~~ 179 (291)
..+.
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 7663
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=4.1e-10 Score=102.74 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||++|+|+++++.|+++|.+||+|.+|.|+.|+ ++++++|+||+|++.+...++|.. ..+.|+++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 67999999999999999999999999999999999999 999999999999999998888843 5688999999999888
Q ss_pred CCCCCc
Q 022827 176 TNAEIP 181 (291)
Q Consensus 176 ~~~~~~ 181 (291)
+.....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 776443
No 75
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.2e-09 Score=95.59 Aligned_cols=83 Identities=24% Similarity=0.446 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCc-eeCC--eeeEEEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV-LLDG--KPMKIEV 173 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~-~l~g--~~i~V~~ 173 (291)
..++|||+-|...-+|+|++.||..||+|.+|.|....++.+||+|||.|.+..+|+.||..||+. ++-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999994 4444 5899999
Q ss_pred ecCCCC
Q 022827 174 VGTNAE 179 (291)
Q Consensus 174 a~~~~~ 179 (291)
+.++.+
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 887763
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=8e-10 Score=107.69 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|+|.|||+..+-.+|++||..||.|+.|+|..-. .+.++|||||+|-++.+|.+|+++|..+.|.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 346799999999999999999999999999999998874 5667999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87764
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.93 E-value=3.4e-09 Score=95.73 Aligned_cols=82 Identities=28% Similarity=0.404 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~--------~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
....+.|||+|||.++|.+++.++|++||.|. .|.|..+..|+.+|-|.+.|...++++-||+.|+...|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34667899999999999999999999999885 3788888899999999999999999999999999999999
Q ss_pred eeeEEEEecC
Q 022827 167 KPMKIEVVGT 176 (291)
Q Consensus 167 ~~i~V~~a~~ 176 (291)
+.|+|+.|+=
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998763
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.92 E-value=8e-09 Score=88.39 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHHhCCceeC---CeeeEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKI 171 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~--tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~---g~~i~V 171 (291)
.-+||||++||.+|...+|..||..|--.+.+.|.+.. ....+-+|||+|.+..+|++|+++||++.|+ ++.|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999998777766665543 2234579999999999999999999999986 679999
Q ss_pred EEecCCCC
Q 022827 172 EVVGTNAE 179 (291)
Q Consensus 172 ~~a~~~~~ 179 (291)
++++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99998764
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.87 E-value=4.3e-09 Score=92.61 Aligned_cols=82 Identities=24% Similarity=0.294 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....+.|||+||.+.+|.++|+..|+.||.|..|.|..|+ .+++++|+||+|.+.+.++.|+. ||+..|.++.|+|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3466899999999999999999999999999999999999 77899999999999999999996 999999999999998
Q ss_pred ecCC
Q 022827 174 VGTN 177 (291)
Q Consensus 174 a~~~ 177 (291)
...+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 80
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=92.54 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~--------~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
.....+|||.+||..+++++|.++|.+|+.|+ .|.|.+|+ |+.+|+-|.|+|++...|++||+.+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44667999999999999999999999999885 36777787 9999999999999999999999999999999
Q ss_pred CeeeEEEEecCCCC
Q 022827 166 GKPMKIEVVGTNAE 179 (291)
Q Consensus 166 g~~i~V~~a~~~~~ 179 (291)
+.+|+|.++.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998876653
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.84 E-value=4.3e-09 Score=96.13 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...+|||+.||+++++++|+++|++||.|..+.|++|. +.++++|+||+|.+++++.+++ ...-+.|+++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999 8899999999999999999988 457789999999999999
Q ss_pred CCCCCccc
Q 022827 176 TNAEIPLQ 183 (291)
Q Consensus 176 ~~~~~~~~ 183 (291)
++......
T Consensus 175 pk~~~~~~ 182 (311)
T KOG4205|consen 175 PKEVMQST 182 (311)
T ss_pred chhhcccc
Confidence 88765544
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=8.1e-09 Score=89.18 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..|||++||+.+.+.||++||..||.|..|.+. .+|+||+|.+..+|..||..||+.+|.+..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999999887 67999999999999999999999999998888887653
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.65 E-value=2.5e-07 Score=70.43 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeC----CeeeEE
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKPMKI 171 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~--~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~----g~~i~V 171 (291)
+||.|.|||...|.++|.+++.+ .|...-+.+..|. +..+.|||||.|.+++.|.+-.+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999999864 3555567777777 8889999999999999999999999998875 456777
Q ss_pred EEecC
Q 022827 172 EVVGT 176 (291)
Q Consensus 172 ~~a~~ 176 (291)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77653
No 84
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=98.62 E-value=1.3e-07 Score=68.52 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHHHhh
Q 022827 269 PVDKSADDLDKELDNYHAEA 288 (291)
Q Consensus 269 ~~~~s~~~~d~el~~y~~~~ 288 (291)
++++|+||||+|||+||+.+
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~ 56 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKT 56 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999654
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.2e-08 Score=94.49 Aligned_cols=71 Identities=31% Similarity=0.337 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
.+..+|+|-|||..|++++|.++|+.||+|+.|+....+ .+.+||+|.+..+|+.|+++|+..++.++.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456799999999999999999999999999987665543 78999999999999999999999999999888
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.57 E-value=2.6e-07 Score=87.19 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+....|.+.+|||.+|++||.+||+.| .|..+.+.. .++++.|-|||+|.++|++++||+ .+...+..+.|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3466788999999999999999999999 577643332 279999999999999999999995 4778888899999877
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
....
T Consensus 84 ~~~e 87 (510)
T KOG4211|consen 84 GGAE 87 (510)
T ss_pred CCcc
Confidence 5444
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.56 E-value=9e-08 Score=83.43 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.+...+||++.|..+++++.|...|.+|-.....+++.|+ |++++||.||.|.+.+++..|+++||+..+..++|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3456899999999999999999999999988889999999 999999999999999999999999999999999998865
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 44
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=1.5e-07 Score=92.04 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~t----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
++..+.|||.||++.++|+.|-..|..||+|..|+|++.++ .+..-++||.|.+..+|++|++.|++..+....|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45668999999999999999999999999999999999873 34567899999999999999999999999999999
Q ss_pred EEEecCC
Q 022827 171 IEVVGTN 177 (291)
Q Consensus 171 V~~a~~~ 177 (291)
+-|.+.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.43 E-value=1e-06 Score=81.51 Aligned_cols=78 Identities=26% Similarity=0.351 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 98 GTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~-~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.+.|.|+||.++ ||.+-|..||..||+|.+|+|.+++ +-.|.|.|.+...|+-|++.|+++.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 688999999665 9999999999999999999999986 45799999999999999999999999999999999886
Q ss_pred CCC
Q 022827 177 NAE 179 (291)
Q Consensus 177 ~~~ 179 (291)
...
T Consensus 373 ~~v 375 (492)
T KOG1190|consen 373 TNV 375 (492)
T ss_pred ccc
Confidence 653
No 90
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=3.1e-06 Score=70.74 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
....|.|++||+..+++||+++..+.|+|....|..| +++.|+|...|+.+-||.+|+...+..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccC
Confidence 4578999999999999999999999999999999877 589999999999999999998876643
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.39 E-value=7.6e-07 Score=84.10 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~-v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.....|.+.+||+.||++||.+||+-.-.|.. |.++.+..+++.|-|||.|++.+.|++||. .|...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 46679999999999999999999997754544 556777788899999999999999999995 4778888899988765
Q ss_pred c
Q 022827 175 G 175 (291)
Q Consensus 175 ~ 175 (291)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.39 E-value=5.6e-07 Score=69.76 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=47.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC-----ceeCCeeeEEE
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-----VLLDGKPMKIE 172 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-----~~l~g~~i~V~ 172 (291)
++.|+|.+++..++.++|+++|+.|++|..|.+... .-.|||-|.++++|++|++++.- ..|.+..++++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 367999999999999999999999999999988765 34799999999999999987754 36677777777
Q ss_pred EecCC
Q 022827 173 VVGTN 177 (291)
Q Consensus 173 ~a~~~ 177 (291)
+....
T Consensus 76 vLeGe 80 (105)
T PF08777_consen 76 VLEGE 80 (105)
T ss_dssp ---HH
T ss_pred ECCCH
Confidence 65433
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2.1e-06 Score=62.88 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=48.6
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 99 TKLYVSNLHPGVTNDD----IRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 99 ~~l~V~nL~~~~te~d----L~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
+.|||.|||.+.+... |++|+..|| .|..| . .+.|+|.|.+.+.|..|.+.|++..+-|..|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 5799999999888765 567777886 45443 2 46899999999999999999999999999999998
Q ss_pred ecCC
Q 022827 174 VGTN 177 (291)
Q Consensus 174 a~~~ 177 (291)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7433
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=8.4e-07 Score=85.34 Aligned_cols=84 Identities=25% Similarity=0.350 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
....+|||++||..+++.+++|++..||+++...++.|. ++.+++|||.+|.+......|+..||+..+.++.|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 445689999999999999999999999999999999998 8999999999999999999999999999999999999988
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.....
T Consensus 367 ~~g~~ 371 (500)
T KOG0120|consen 367 IVGAS 371 (500)
T ss_pred hccch
Confidence 76553
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.22 E-value=1.6e-06 Score=74.44 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=56.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
+......||||.||..+|||++|+.+|+.|--...++|. .+.|. ..|||+|++.+.|..||..|++..|.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 445566799999999999999999999999776655554 33443 47999999999999999999887653
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=8.9e-07 Score=76.60 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
+....+.|+|.||+..+++.+|+++|..+|++..+.+. ..++||+|.+.++|..||+.|++..|.++.|.+..
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 34567899999999999999999999999999655443 56899999999999999999999999999999954
Q ss_pred e
Q 022827 174 V 174 (291)
Q Consensus 174 a 174 (291)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 3
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.21 E-value=5.4e-06 Score=71.37 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC-CeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-g~~i~V~ 172 (291)
..++..+||+.|||.+++.+.|..+|.+|.-.+.|.++... .+.|||+|.+...|..|...+++..+. ...|+|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 35678899999999999999999999999999999998765 679999999999999999999998876 7788887
Q ss_pred Eec
Q 022827 173 VVG 175 (291)
Q Consensus 173 ~a~ 175 (291)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 654
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.19 E-value=5.7e-07 Score=85.90 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.....+||+.-|...+++-||.+||+.+|.|..|.|+.|+ +..++|.|||+|.+.+.+..|| .|.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 3445689999999999999999999999999999999999 8999999999999999999999 8999999999999987
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 54
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.18 E-value=1.9e-05 Score=77.53 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=68.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~-~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
+.|-|.|+|++|+-+||.+||..|-.+. +|.|.++..|.+.|-|.|.|++.++|.+|...|++..|..+.|+|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4889999999999999999999996654 67777787999999999999999999999999999999999998875
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.14 E-value=5.1e-06 Score=75.55 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G--~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+||+||-|++|++||.+.+...| .+.++++..++ +|.+||||+|...+....++.|+.|...+|.|+.-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4799999999999999999887766 55677778888 8999999999999999999999999999999986666443
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.01 E-value=4e-05 Score=70.41 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=76.7
Q ss_pred CCCCCCCCcEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 91 GISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
.+....+++.+.|.+|+.. ++-+.|..||..||.|.+|++++.+ .+.|.|++.+..+.+.||..||+..+-|.+|
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 3455678899999999876 5567799999999999999999876 5789999999999999999999999999999
Q ss_pred EEEEecCCCCCcc
Q 022827 170 KIEVVGTNAEIPL 182 (291)
Q Consensus 170 ~V~~a~~~~~~~~ 182 (291)
.|.+++.....+.
T Consensus 356 ~v~~SkQ~~v~~~ 368 (494)
T KOG1456|consen 356 NVCVSKQNFVSPV 368 (494)
T ss_pred EEeeccccccccC
Confidence 9999887765444
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.93 E-value=4.5e-05 Score=69.44 Aligned_cols=80 Identities=13% Similarity=0.296 Sum_probs=64.1
Q ss_pred CCCCcEEEEcCCC----CCCCH-------HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCce
Q 022827 95 IEVGTKLYVSNLH----PGVTN-------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (291)
Q Consensus 95 ~~~~~~l~V~nL~----~~~te-------~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~ 163 (291)
....++|.|.||= +..+. +||.+-.++||.|.+|.|.-. ++.|.+.|.|.+.++|..||+.|++..
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4566899999982 23442 455666889999999877633 568999999999999999999999999
Q ss_pred eCCeeeEEEEecCC
Q 022827 164 LDGKPMKIEVVGTN 177 (291)
Q Consensus 164 l~g~~i~V~~a~~~ 177 (291)
|+|+.|..++....
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999999876533
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.88 E-value=6.6e-06 Score=74.82 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 97 VGTKLY-VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 97 ~~~~l~-V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++| |.||++.+++++|+++|..++.|..+++..+. ++..++|+||.|.+...+..++.. +...+.+.++.|...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 99999999999999999999999999999988 999999999999999999999976 788899999999876
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+.+
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6553
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.86 E-value=3e-05 Score=70.34 Aligned_cols=81 Identities=21% Similarity=0.417 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCCCHHH----H--HHHHHhcCCeeEEEEeeCC-CC-CCceE--EEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 97 VGTKLYVSNLHPGVTNDD----I--RELFSEIGELKRYAIHFDK-NG-RPSGS--AEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~d----L--~~~F~~~G~v~~v~i~~d~-tg-~~kG~--afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
.-.-|||-+|++.+..++ | .++|.+||.|+.|.|.+.. +- ...+. .||+|.+.|+|..||.+.++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999887776 2 5899999999988776543 11 11222 4999999999999999999999999
Q ss_pred eeeEEEEecCC
Q 022827 167 KPMKIEVVGTN 177 (291)
Q Consensus 167 ~~i~V~~a~~~ 177 (291)
+.|+..+-+.+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999886654
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.85 E-value=1.5e-05 Score=74.36 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---C-C--CC--------CceEEEEEEcCHHHHHHHHHHhCC
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD---K-N--GR--------PSGSAEVVYARRSDAFAALKRYNN 161 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d---~-t--g~--------~kG~afV~F~~~~~A~~Ai~~lng 161 (291)
.++++|.+.|||.+-.-+.|.+||..||.|+.|+|+.. . + +. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999887 3 1 21 256899999999999999988866
Q ss_pred ceeCCeeeEEEE
Q 022827 162 VLLDGKPMKIEV 173 (291)
Q Consensus 162 ~~l~g~~i~V~~ 173 (291)
..-.-.-|+|.+
T Consensus 309 e~~wr~glkvkL 320 (484)
T KOG1855|consen 309 EQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhcchhhh
Confidence 444334444444
No 106
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.82 E-value=1.1e-05 Score=70.62 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=55.8
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 113 DDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 113 ~dL~~~F~-~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
+||...|+ +||+|+++.|..+..-+-.|-+||.|...++|++|++.||+..+.|++|..+++....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 34444445 8999999988777666678899999999999999999999999999999999987655
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.79 E-value=5.5e-05 Score=70.25 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe-eeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~-~i~V~~a 174 (291)
+++.+|.++|||..++|++|+++|.+-|-..+......+ .+-+|++.+.+.|+|..|+-.++++.+... -|+|+++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k---d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK---DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC---CcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 567899999999999999999999988876655444432 255999999999999999999999998765 8999988
Q ss_pred cCC
Q 022827 175 GTN 177 (291)
Q Consensus 175 ~~~ 177 (291)
+..
T Consensus 489 ks~ 491 (492)
T KOG1190|consen 489 KST 491 (492)
T ss_pred ccc
Confidence 753
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.73 E-value=4.5e-05 Score=70.33 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCC-eeE--EEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKR--YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~-v~~--v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.+...|.+.+||+..+.+||.+||..|-. |.. |.++.+..|++.|-|||+|.++|+|.+|....+++..+.+.|.|.
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 34568999999999999999999998864 333 889999999999999999999999999999999888888888886
Q ss_pred Eec
Q 022827 173 VVG 175 (291)
Q Consensus 173 ~a~ 175 (291)
-+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 554
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00019 Score=69.12 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC-Cee
Q 022827 96 EVGTKLYVSNLHPGVTN------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKP 168 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te------~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-g~~ 168 (291)
--.+.|+|.|+|---.. .-|..+|+++|+|..+.+..+..+..+||.|++|.+..+|+.|++.||++.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 45578999999853222 23678899999999999998887779999999999999999999999998886 557
Q ss_pred eEEEEec
Q 022827 169 MKIEVVG 175 (291)
Q Consensus 169 i~V~~a~ 175 (291)
+.|.+.+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776543
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.72 E-value=8e-05 Score=50.33 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=42.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (291)
+.|-|.+.+++..+. |..+|.+||+|.++.+... .-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 578899999877654 4458999999999877632 458999999999999985
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.59 E-value=0.00023 Score=57.91 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=52.5
Q ss_pred hhhhhhhhcCCCCCCCCcEEEEcCCC----C--CCCH---HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHH
Q 022827 82 LFEDSLRAAGISGIEVGTKLYVSNLH----P--GVTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152 (291)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~V~nL~----~--~~te---~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A 152 (291)
.|.+.....+| +..||.|+=+. . ...+ .+|.+.|.+||+|.-|+++-+ .-+|+|.+-+.|
T Consensus 15 Vf~eVi~~~GP----pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sA 83 (146)
T PF08952_consen 15 VFEEVISSQGP----PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSA 83 (146)
T ss_dssp -----S---------TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHH
T ss_pred HHHHHHHhcCC----CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHH
Confidence 34444433443 55566665443 1 2222 256778899999998888754 589999999999
Q ss_pred HHHHHHhCCceeCCeeeEEEEecCCCC
Q 022827 153 FAALKRYNNVLLDGKPMKIEVVGTNAE 179 (291)
Q Consensus 153 ~~Ai~~lng~~l~g~~i~V~~a~~~~~ 179 (291)
.+|+ .+++.++.|+.|+|.+..++-.
T Consensus 84 Laal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 84 LAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 9999 7899999999999999887754
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.54 E-value=0.00051 Score=63.35 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCCCCcEEEEc--CCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC--Ceee
Q 022827 94 GIEVGTKLYVS--NLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPM 169 (291)
Q Consensus 94 ~~~~~~~l~V~--nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~--g~~i 169 (291)
+..+.+.|.+. |--+.+|.+-|..+...+|+|..|.|... ++ -.|.|||++.+.|++|.+.||+..|. -+.|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 34455555544 55667999999999999999999887754 33 36999999999999999999998763 3699
Q ss_pred EEEEecCCC
Q 022827 170 KIEVVGTNA 178 (291)
Q Consensus 170 ~V~~a~~~~ 178 (291)
+|++|++..
T Consensus 192 KIeyAkP~r 200 (494)
T KOG1456|consen 192 KIEYAKPTR 200 (494)
T ss_pred EEEecCcce
Confidence 999998764
No 113
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.51 E-value=8.7e-05 Score=71.84 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=67.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee---CC
Q 022827 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL---DG 166 (291)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~~te~dL~~~F~-~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l---~g 166 (291)
.++....+..|||.||-.-+|.-.|++|+. .+|.|....| | +-+-.|||.|.+.++|.+.+.+||++.+ +.
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H---HhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 345567788999999999999999999998 6777776633 3 2366799999999999999999999876 56
Q ss_pred eeeEEEEecCCC
Q 022827 167 KPMKIEVVGTNA 178 (291)
Q Consensus 167 ~~i~V~~a~~~~ 178 (291)
+.|.|.|+....
T Consensus 512 K~L~adf~~~de 523 (718)
T KOG2416|consen 512 KHLIADFVRADE 523 (718)
T ss_pred ceeEeeecchhH
Confidence 788888876443
No 114
>PF07078 FYTT: Forty-two-three protein; InterPro: IPR009782 This family consists of several hypothetical mammalian proteins of around 320 residues in length. The function of this family is unknown although several of the family members are annotated as putative 40-2-3 proteins.
Probab=97.48 E-value=3.8e-05 Score=68.55 Aligned_cols=19 Identities=58% Similarity=0.786 Sum_probs=16.5
Q ss_pred CCcCCCChHHHHHhcccCc
Q 022827 2 ATHVDMSLDDIIKSRKKSE 20 (291)
Q Consensus 2 ~~~ld~sLddii~~~~~~~ 20 (291)
.|||||||||||+-+||-.
T Consensus 26 ~DKIDMSLDDIIKLNKKE~ 44 (316)
T PF07078_consen 26 LDKIDMSLDDIIKLNKKEQ 44 (316)
T ss_pred cccccccHHHHHHhhhhhh
Confidence 4899999999999987753
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.48 E-value=0.00012 Score=64.28 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=60.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-C--------CCCce----EEEEEEcCHHHHHHHHHHhCCce
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N--------GRPSG----SAEVVYARRSDAFAALKRYNNVL 163 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-t--------g~~kG----~afV~F~~~~~A~~Ai~~lng~~ 163 (291)
..-.||+++||+.+...-|+++|+.||+|-.|.|.... + +.+.. -++|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 44589999999999999999999999999999887765 3 22222 35799999999999999999999
Q ss_pred eCCee
Q 022827 164 LDGKP 168 (291)
Q Consensus 164 l~g~~ 168 (291)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00033 Score=67.02 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=62.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHH
Q 022827 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~~te~dL~~~F~-~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
...++++.+||||+.||--++.++|..+|+ .||.|..+-|-.|+ -+.++|-+-|+|.+..+-.+||++
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345678999999999999999999999998 89999999999995 788999999999999999999974
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.0001 Score=74.11 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~ 177 (291)
..+|+|.|+|+..|.++|+.+|..+|.++++.++..+.++++|.|||.|.++.++..++...+...+.-..+.|.++.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 35899999999999999999999999999999999999999999999999999999999888888888888888887664
Q ss_pred C
Q 022827 178 A 178 (291)
Q Consensus 178 ~ 178 (291)
.
T Consensus 816 ~ 816 (881)
T KOG0128|consen 816 R 816 (881)
T ss_pred c
Confidence 4
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00099 Score=63.79 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--C--CCCce---EEEEEEcCHHHHHHHHHHhC
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--N--GRPSG---SAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~--t--g~~kG---~afV~F~~~~~A~~Ai~~ln 160 (291)
.-+++|||+.||++++|+.|...|..||.|. |...... . -.++| |+|+.|+++..+.+.|.++.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 4567999999999999999999999999876 3333211 1 13466 99999999998888776653
No 119
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00086 Score=64.91 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=51.8
Q ss_pred HHHHHHhcCCeeEEEEeeC-CCC---CCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022827 115 IRELFSEIGELKRYAIHFD-KNG---RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (291)
Q Consensus 115 L~~~F~~~G~v~~v~i~~d-~tg---~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~ 177 (291)
|+.-+++||.|..|.|..+ .+. -..|..||+|.+.++++.|+++|+|.+|.++.+...|....
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3444678999999999887 322 34677999999999999999999999999999998886543
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.0025 Score=48.86 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-EeeC-------CCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFD-------KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~-i~~d-------~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~ 168 (291)
..+-|.|-+.|+. ....|.++|++||+|.+.. +..+ +.-....+..|+|+++.+|++|| ..|+..|.+..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3466888899987 4467778999999998664 1110 10112458999999999999999 56999999865
Q ss_pred e-EEEEe
Q 022827 169 M-KIEVV 174 (291)
Q Consensus 169 i-~V~~a 174 (291)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45555
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.02 E-value=0.0042 Score=43.20 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEI---GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~---G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
..+|+|.+|+ +++.+||+.+|..| .....|.++-|. .|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4689999996 47889999999988 234578888773 5899999999999999764
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.95 E-value=0.0006 Score=67.32 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~-v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+......|||..||..+++.++.++|...-.|++ |.|.+-.+++-.+.|||+|..++++.+|+..-+.+.+..+.|+|.
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 4456789999999999999999999987767776 777777788889999999999888888887666667777788875
Q ss_pred Ee
Q 022827 173 VV 174 (291)
Q Consensus 173 ~a 174 (291)
-.
T Consensus 510 si 511 (944)
T KOG4307|consen 510 SI 511 (944)
T ss_pred ch
Confidence 43
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.90 E-value=0.00088 Score=62.71 Aligned_cols=74 Identities=28% Similarity=0.309 Sum_probs=59.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC-ceeCCeeeEEEEecC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKIEVVGT 176 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-~~l~g~~i~V~~a~~ 176 (291)
.+|||.||.+.++..||..+|...- ....-.++. .+|+||.+.+...|.+|++.+++ .++.|+.+.|+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997541 111112221 58999999999999999999998 579999999988766
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 54
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.86 E-value=0.0017 Score=60.29 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=60.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK----NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~----tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..|.|.||.+.+|.++++.||.-.|.|..+.|+.+. -....-+|||.|.+...+..|. .|-+++|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 489999999999999999999999999999887644 1234568999999999888887 67777776766655543
No 125
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.84 E-value=0.0037 Score=56.09 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCC--CCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 113 DDIRELFSEIGELKRYAIHFDKNG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 113 ~dL~~~F~~~G~v~~v~i~~d~tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+++++.+++||.|..|.|+..++- .-.--.||+|+..++|.+|+-.||+..|.|+.+...+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999999988887621 112347999999999999999999999999999887754
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.84 E-value=0.0045 Score=57.45 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=58.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHh-c---CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSE-I---GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~-~---G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.-.|.+.+||+++++.|+.+||.. | +.++.|.++...+++..|-|||.|..+++|+.||.+ |...|.-+.|.|..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 346778899999999999999962 1 244556666666899999999999999999999965 55556666665543
Q ss_pred e
Q 022827 174 V 174 (291)
Q Consensus 174 a 174 (291)
+
T Consensus 240 S 240 (508)
T KOG1365|consen 240 S 240 (508)
T ss_pred H
Confidence 3
No 127
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.78 E-value=0.0014 Score=57.70 Aligned_cols=63 Identities=30% Similarity=0.559 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 161 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng 161 (291)
..|||.||...++.+.|.+.|+.||+|....++.|..+++.+-.+|+|...-.|.+|+..++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 789999999999999999999999999988888888888888999999999999999988754
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=7.5e-05 Score=74.95 Aligned_cols=70 Identities=29% Similarity=0.381 Sum_probs=59.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
...+++||+||++.+.+.||...|..++.|..+.|.... +++.+|+|||+|..++++.+||.....+.+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 345789999999999999999999999988887777445 7889999999999999999999655555444
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.51 E-value=0.0079 Score=44.21 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=42.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 161 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng 161 (291)
....+|. .|......||.+||+.||.|. |..+.| -.|||.+.+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 3456666 999999999999999999986 555554 2699999999999999988763
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.41 E-value=0.0044 Score=62.98 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC--eeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g--~~i~V~ 172 (291)
....+.++|..|..++....|...|..||.|..|.+-.. .-||||.|++...|++|+..|-+..|.+ +.|.|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 446688999999999999999999999999998766543 5699999999999999999999999875 679999
Q ss_pred EecCCCCC
Q 022827 173 VVGTNAEI 180 (291)
Q Consensus 173 ~a~~~~~~ 180 (291)
|+.+.-..
T Consensus 527 la~~~~~~ 534 (975)
T KOG0112|consen 527 LASPPGAT 534 (975)
T ss_pred cccCCCCC
Confidence 98765543
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.17 E-value=0.0016 Score=59.41 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=63.1
Q ss_pred cEEEEcCCCCCCCHHHH---HHHHHhcCCeeEEEEeeCCC----CCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 99 TKLYVSNLHPGVTNDDI---RELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL---~~~F~~~G~v~~v~i~~d~t----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
.-+||-.|+..+..+++ .+.|.+||.|.+|.+..+.+ -.....++|+|...++|..||...++..++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 46788888887666554 35799999999988877652 112234899999999999999999999999999888
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8776654
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.06 E-value=0.0088 Score=50.65 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeeCC--CC-CCceEEEEEEcCHHHHHHHHHHhCCceeCCe--
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSE-IGEL---KRYAIHFDK--NG-RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-- 167 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~-~G~v---~~v~i~~d~--tg-~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~-- 167 (291)
..++|.|.+||+.+||+++.+.++. +++. ..+.-.... .. ....-|||.|.+.+++...+..++++.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4579999999999999999987765 5554 333322332 11 2235699999999999999999999776432
Q ss_pred ---eeEEEEecC
Q 022827 168 ---PMKIEVVGT 176 (291)
Q Consensus 168 ---~i~V~~a~~ 176 (291)
...|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 445666543
No 133
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.00 E-value=0.03 Score=40.35 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=40.1
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCC-----eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 100 KLYVS-NLHPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 100 ~l~V~-nL~~~~te~dL~~~F~~~G~-----v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
+|||. +--..++..+|..++..... |-.|.|..+ |+||+-.. +.|+.+++.|++..+.|++|+|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 44553 22446788999999976644 446777744 89999875 588999999999999999999987
Q ss_pred e
Q 022827 174 V 174 (291)
Q Consensus 174 a 174 (291)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.97 E-value=0.01 Score=57.53 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=59.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHH--hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC--ceeCCeeeE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFS--EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMK 170 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~--~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~g~~i~ 170 (291)
...-|.|.|.-||..+-+|+++.||. .|-.+++|.+-.+. -=||+|++..||+.|.+.|.. ++|.|++|.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34557888999999999999999996 58888888887662 259999999999999988765 567888776
Q ss_pred EEE
Q 022827 171 IEV 173 (291)
Q Consensus 171 V~~ 173 (291)
..+
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 554
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.94 E-value=0.0053 Score=58.36 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=59.5
Q ss_pred cEEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022827 99 TKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (291)
Q Consensus 99 ~~l~V~nL~~~~-te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~ 177 (291)
+.|-+.-+++.+ +.++|...|.+||+|..|.|-+. .-.|.|+|.+..+|-.|. +.+...|+++.|+|.|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 344444455554 44889999999999999988776 346999999999997776 67899999999999998874
Q ss_pred C
Q 022827 178 A 178 (291)
Q Consensus 178 ~ 178 (291)
+
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.48 E-value=0.0032 Score=63.97 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.+||++||+..+++.+|+..|..+|.|.+|.|...+-+.-.-|+||.|.+...+..|+..+.+..|..-.+++-+-
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4567999999999999999999999999999999988764444568999999999999999998887775545555544
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.39 E-value=0.084 Score=42.80 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=51.1
Q ss_pred CCCcEEEEcCCCCCCCH-HHHH---HHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 96 EVGTKLYVSNLHPGVTN-DDIR---ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te-~dL~---~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
++-.+|.|.=|..++.. +||+ ..++.||+|.+|.++- +-.|.|+|.+..+|=+|+.+++. ..-|.-+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 45578888755554332 4454 4568999999998763 44799999999999999999876 444555665
Q ss_pred EE
Q 022827 172 EV 173 (291)
Q Consensus 172 ~~ 173 (291)
.|
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 55
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.33 E-value=0.052 Score=46.29 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC--CceeCCeeeEEEEecCCC
Q 022827 111 TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 111 te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln--g~~l~g~~i~V~~a~~~~ 178 (291)
..+.|+++|..|..+..+.++.. -.-..|.|.+.++|.+|...|+ +..+.+..|+|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999999988777644 4468999999999999999999 899999999999985443
No 139
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=95.32 E-value=0.035 Score=40.14 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=14.6
Q ss_pred CChhHHHHHHHHHHHhh
Q 022827 272 KSADDLDKELDNYHAEA 288 (291)
Q Consensus 272 ~s~~~~d~el~~y~~~~ 288 (291)
.+...||+|||.||+++
T Consensus 55 ~~~~~LD~~Ld~Y~~~~ 71 (74)
T PF13865_consen 55 KTKSKLDAELDSYMSKK 71 (74)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 35789999999999976
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.04 E-value=0.034 Score=54.00 Aligned_cols=84 Identities=15% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeC----Cee
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKP 168 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~-~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~----g~~ 168 (291)
..+-+++.|.|+|...|...|...-+ ..+.-.-+.+..|- +....|||||.|.+++++..+.+++|++.+. .+.
T Consensus 385 e~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 385 ECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred cCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 34556777777776666555444432 34555556666665 6678999999999999999999999997653 345
Q ss_pred eEEEEecCCC
Q 022827 169 MKIEVVGTNA 178 (291)
Q Consensus 169 i~V~~a~~~~ 178 (291)
+.|.||.-+-
T Consensus 465 a~itYArIQG 474 (549)
T KOG4660|consen 465 ASITYARIQG 474 (549)
T ss_pred eeeehhhhhc
Confidence 6666665443
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.81 E-value=0.02 Score=56.65 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.+.++..+|||+||.+.+.++-++.++..||.|..+.... |+|.+|..+..+..|+..++-..++++.+.+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 4556788999999999999999999999999998776652 89999999999999999999889988877765
Q ss_pred E
Q 022827 173 V 173 (291)
Q Consensus 173 ~ 173 (291)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 142
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.71 E-value=0.85 Score=46.29 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=50.9
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCCee-----EEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 100 KLYVS-NLHPGVTNDDIRELFSEIGELK-----RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 100 ~l~V~-nL~~~~te~dL~~~F~~~G~v~-----~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
++||. +-...++..+|..++..-+.|. .|.|.. .|.||+.. .+.|...++.|++..+.+++|.|+.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcC-hhhHHHHHHHhccccccCCceEEEE
Confidence 45553 2345688889988887655443 566663 38899976 4578899999999999999999998
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
+.
T Consensus 560 ~~ 561 (629)
T PRK11634 560 LG 561 (629)
T ss_pred CC
Confidence 74
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.19 Score=49.26 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCCCCC--------------------------------
Q 022827 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNGR-------------------------------- 137 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~----G~v~~v~i~~d~tg~-------------------------------- 137 (291)
...+..|-|.||.|+ |...||.-+|+.| |.|.+|.|....-|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999997 7789999999877 578888775432111
Q ss_pred ----------------CceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 138 ----------------PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 138 ----------------~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
-.=||.|+|.+.+.|.+..+.++|+.|....+.+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 124899999999999999999999999765444443
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.08 E-value=0.53 Score=36.68 Aligned_cols=69 Identities=9% Similarity=-0.008 Sum_probs=49.0
Q ss_pred CCcEEEEcC-CCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 97 VGTKLYVSN-LHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 97 ~~~~l~V~n-L~~~~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
..+.|.|-- +|+.++.++|..+.+.+- .|..++|+.|.+. ++-.+.+.|.+.++|..-.+.|||+.++.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444444 455555566765556554 5668888887642 46689999999999999999999988764
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.86 E-value=0.3 Score=34.46 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 109 GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 109 ~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
.++-+||+..+..|.- . .|..|++| -||.|.+.++|++|....++..+-...|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3677999999999953 3 34555433 589999999999999999998887777654
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.70 E-value=0.054 Score=55.05 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=61.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee--CCeeeEEEEecCC
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--DGKPMKIEVVGTN 177 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l--~g~~i~V~~a~~~ 177 (291)
+.++.|.+-.++...|..||++||.|.++..+.+ .-.|.|+|.+.+.|..|+++++++++ .|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4445555667778889999999999999988776 56899999999999999999999775 5778999998865
Q ss_pred C
Q 022827 178 A 178 (291)
Q Consensus 178 ~ 178 (291)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 5
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.34 E-value=0.051 Score=49.56 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...+++||+++.+.+.+.++..+|.++|.+..+.+.... ...++++++|.|...+.+..|+.......+....+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988877776655 7788999999999999999999765555666666655554
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
....
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 4433
No 148
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.03 E-value=0.28 Score=44.45 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=52.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee-eEEEEecC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-MKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~-i~V~~a~~ 176 (291)
.+=|-|-+.|+.-. ..|..+|++||+|.+.... .+ --+-+|.|.+..+|++|| ..|+..|++.. |-|.-+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCC
Confidence 34566667776544 4567799999999865433 22 348899999999999999 56999998864 44554444
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 149
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=92.59 E-value=0.32 Score=50.39 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=3.7
Q ss_pred CCCccCCCC
Q 022827 224 RGGLRRSSQ 232 (291)
Q Consensus 224 rgG~~~~~g 232 (291)
+|||+..++
T Consensus 1232 rgGfrnngg 1240 (1282)
T KOG0921|consen 1232 RGGFRNNGG 1240 (1282)
T ss_pred CCccccCCC
Confidence 344443333
No 150
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.91 E-value=0.55 Score=43.41 Aligned_cols=8 Identities=50% Similarity=0.945 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q 022827 244 RGRGGGGG 251 (291)
Q Consensus 244 ~grgg~Gg 251 (291)
+++|+++|
T Consensus 439 r~gggr~g 446 (465)
T KOG3973|consen 439 RDGGGRDG 446 (465)
T ss_pred CCCCCCCC
Confidence 33333333
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.37 E-value=0.88 Score=43.48 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~-G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
+++.|.|--+|..+|..||-.|...| -.|.+++|++|.... +=.+.|.|.+.++|....+.|||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 38899999999999999999998754 467799999876332 4578999999999999999999988764
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.84 E-value=0.46 Score=40.05 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=55.8
Q ss_pred CCcEEEEcCCCCCCCHH-----HHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe-eeE
Q 022827 97 VGTKLYVSNLHPGVTND-----DIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 170 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~-----dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~-~i~ 170 (291)
-.++|++.+|+..|-.+ ..+.+|.+|-+.....++. +..+.-|.|.+++.|..|..+++...|.++ .++
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 34678888888765432 3455666666555444443 356788999999999999999999999998 787
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
.-++++.-
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776543
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=84.39 E-value=1.9 Score=33.89 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=30.2
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC-HHHHHHHH
Q 022827 100 KLYVSNLHPG---------VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAAL 156 (291)
Q Consensus 100 ~l~V~nL~~~---------~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~-~~~A~~Ai 156 (291)
++.|-|++.. ++.++|.+.|+.|.+++ |..++++.+ +.+++.|+|.+ -.-...|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChHHHHHHH
Confidence 4566677443 45688999999998875 666676654 47899999985 33344444
No 154
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.16 E-value=2.5 Score=39.93 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~-~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
...|-|.++|.....+||..+|+.|+.-- +|.++-| -+||..|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 46899999999999999999999997543 4555555 2799999999999999943
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=83.62 E-value=0.058 Score=50.87 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.+.+|-|.|||+...++.|..|+..||.|..|.++...+- .-..-|+|.+.+.+..||..||+..|....++|.|...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 4567999999999999999999999999998876443211 22345789999999999999999999999999988654
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
..
T Consensus 157 eq 158 (584)
T KOG2193|consen 157 EQ 158 (584)
T ss_pred hh
Confidence 43
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=82.99 E-value=0.18 Score=47.23 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=54.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+|+|.+|+..+...++-++|..+|+|.+..+.. +...-+|.|+|........|+ .+++.++.-+...+.+..
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcC
Confidence 6899999999999999999999999988665543 233457889999888888888 456666654433333333
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=79.25 E-value=0.45 Score=41.37 Aligned_cols=76 Identities=30% Similarity=0.348 Sum_probs=62.5
Q ss_pred CCCcEEEEcC----CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 96 EVGTKLYVSN----LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~n----L~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
+...+++.++ |...++++.+.++|+..+++..+++..+.+++++-+.||++......-.++..++...+-=+++.+
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 3446777888 888899999999999999999999998888889999999999888888888888776654444333
No 158
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.73 E-value=5.2 Score=36.23 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCceEEEEEEcCH
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARR 149 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~-~v~i~~d~tg~~kG~afV~F~~~ 149 (291)
.+-|||.||+.++.-.||+..+.+.+-+. ++.+. -+.+-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 45699999999999999999998776443 33332 2366799999764
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.72 E-value=6.3 Score=35.84 Aligned_cols=78 Identities=12% Similarity=0.220 Sum_probs=57.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--------CCCCceEEEEEEcCHHHHHHHH----HHhCC--ce
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--------NGRPSGSAEVVYARRSDAFAAL----KRYNN--VL 163 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~--------tg~~kG~afV~F~~~~~A~~Ai----~~lng--~~ 163 (291)
.+.|.+.||..+++-..+...|.+||+|++|.++.+. .-.......+.|-+.+.+.... +.|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999888888999999999999998765 2233467889999887665432 22222 34
Q ss_pred eCCeeeEEEEec
Q 022827 164 LDGKPMKIEVVG 175 (291)
Q Consensus 164 l~g~~i~V~~a~ 175 (291)
|+...|.|.++.
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 677788888765
No 160
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=75.96 E-value=0.41 Score=46.75 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~ 167 (291)
-..|+|||.|++++++-++|..+++.+--+..+.+.... .....-+.+|+|.---....|+.+||+..|...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 456899999999999999999999988766666554443 344566789999987788888888888766543
No 161
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=75.02 E-value=40 Score=28.72 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=7.2
Q ss_pred HHHHHHHHhcCCeeEEE
Q 022827 113 DDIRELFSEIGELKRYA 129 (291)
Q Consensus 113 ~dL~~~F~~~G~v~~v~ 129 (291)
++|-++=+-||+|.++.
T Consensus 89 ~qIGKVDEIfG~i~d~~ 105 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVH 105 (215)
T ss_pred hhhcchhhhcccccccE
Confidence 33333334445555443
No 162
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.80 E-value=0.46 Score=45.23 Aligned_cols=80 Identities=4% Similarity=-0.157 Sum_probs=63.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
+++.|+..|+..+++++|.-+|..|+.|..+.+.... .+..+-++||+-.+ .++..||..+.-..+.+..++|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3566788899999999999999999999988776554 45567788888664 577888887777778888888888765
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
..
T Consensus 82 s~ 83 (572)
T KOG4365|consen 82 SS 83 (572)
T ss_pred hh
Confidence 44
No 163
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=74.34 E-value=54 Score=27.93 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.6
Q ss_pred EEEEcCHHH
Q 022827 143 EVVYARRSD 151 (291)
Q Consensus 143 fV~F~~~~~ 151 (291)
=|.+++.+.
T Consensus 82 PIylenk~q 90 (215)
T KOG3262|consen 82 PIYLENKEQ 90 (215)
T ss_pred ceeecchhh
Confidence 344444433
No 164
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=72.24 E-value=15 Score=24.67 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCH----HHHHHHHHH
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR----SDAFAALKR 158 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~----~~A~~Ai~~ 158 (291)
+|.|.||.-.--...|++.+...-.|.++.+... ...+.|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888877777889999999888998888766 56788988844 566666654
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=70.38 E-value=17 Score=34.67 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=58.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCCCCC--------------------------------
Q 022827 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNGR-------------------------------- 137 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~----G~v~~v~i~~d~tg~-------------------------------- 137 (291)
-.+...|-|-||.|+ |...||..+|+.| |.|..|.|....-|+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456789999999997 7778999999876 456666654321110
Q ss_pred ----------------------------------CceEEEEEEcCHHHHHHHHHHhCCceeCCe--eeEEEEec
Q 022827 138 ----------------------------------PSGSAEVVYARRSDAFAALKRYNNVLLDGK--PMKIEVVG 175 (291)
Q Consensus 138 ----------------------------------~kG~afV~F~~~~~A~~Ai~~lng~~l~g~--~i~V~~a~ 175 (291)
-.-||.|+|.+.+.+......++++++... .+.+.++.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 023889999999999999999999887654 44444443
No 166
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=70.34 E-value=5.2 Score=34.31 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=44.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCceEEEEEEcCHHHHHHHH
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG-RPSGSAEVVYARRSDAFAAL 156 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg-~~kG~afV~F~~~~~A~~Ai 156 (291)
.......+++.+++..++..++..+|..++.+..+.+...... ....+.++.+.....+..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 4457789999999999999999999999999977777666522 23333444444444444443
No 167
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.31 E-value=13 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCeeEEEEeeCC
Q 022827 113 DDIRELFSEIGELKRYAIHFDK 134 (291)
Q Consensus 113 ~dL~~~F~~~G~v~~v~i~~d~ 134 (291)
++|+++|+..|+|.-+-|..-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 6899999999999866654433
No 168
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=67.59 E-value=5.8 Score=37.33 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=47.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCC---CCCceEEEEEEcCHHHHHHHHHHhCCcee
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~-v~~v~i~~d~t---g~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
.-++|.|.+||+..++++|.+-...|-+ |....+..... ..-...|||.|..+++...-...|+++.|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3478999999999999998887766532 22222221111 12246799999999998888888888654
No 169
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=67.58 E-value=47 Score=26.46 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCC---CCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 97 VGTKLYVSNLHPG---VTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 97 ~~~~l~V~nL~~~---~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+...|.|+..... .+-..+++++.+-| .++++... .....|.|.+.++..+|.+.|....-++..|.+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 4456777766433 45677888888776 34454443 2368999999999999999887666556566666
Q ss_pred Eec
Q 022827 173 VVG 175 (291)
Q Consensus 173 ~a~ 175 (291)
++.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 554
No 170
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=64.84 E-value=9.6 Score=27.03 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=42.0
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 113 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 113 ~dL~~~F~~~G-~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
++|++-|.+.| ++..|..+..+ +..+.-.-||+.....+... .|+=..|.++.+.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46788888887 67777777776 56677788888876544333 45556788999888843
No 171
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.93 E-value=16 Score=25.76 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=42.1
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 113 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 113 ~dL~~~F~~~G-~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
++|.+-|...| +|..|.-+..+ +..+.-.-||+++...+.. +.|+=..|.++.|+|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecC
Confidence 56777777766 66677666666 6777778899988765533 345667788999998854
No 172
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=61.97 E-value=9.4 Score=32.32 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCC--CCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 99 TKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~-~~G~v~~v~i~~d~tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.++|.. .|++.|.++.. .-+.+..|.+.....+ ..+|-.||+|.+.+.|.++++. +.....-..|...
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRS 182 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHH
Confidence 455555 45666655543 2267777766554444 6789999999999999988865 3333333344433
No 173
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=60.39 E-value=30 Score=25.51 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh
Q 022827 101 LYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~-~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
.|+--++..++-.+|++.++. |+ .|.+|..+.-+.+. --|||+|...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 334447888999999999976 54 55666666555433 34999999888887765443
No 174
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.03 E-value=34 Score=24.83 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 101 LYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~-~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
-|+-.++..++-.+|++.++. |+ .|.+|..+.-+.+. --|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 455557889999999999876 54 45566665554333 2499999887777765543
No 175
>PRK11901 hypothetical protein; Reviewed
Probab=56.22 E-value=41 Score=31.19 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEE--EEcCHHHHHHHHHHhCCce
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEV--VYARRSDAFAALKRYNNVL 163 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV--~F~~~~~A~~Ai~~lng~~ 163 (291)
...+|-|..+. +++.|..|..++. +..+.|.... +|+ ..|..| .|.+.++|+.||+.|.-..
T Consensus 244 ~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 244 SHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34466665554 6888888888774 4555555443 444 345544 7999999999999986533
No 176
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=55.29 E-value=39 Score=23.74 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=37.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR 148 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~ 148 (291)
.+|+|.++.=..-...+++.+.....|..+.+..+ .+.++|+|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 57888888766667789999998888998888877 5669999998
No 177
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.41 E-value=14 Score=33.81 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=27.4
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCCCC
Q 022827 142 AEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEI 180 (291)
Q Consensus 142 afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~~~ 180 (291)
|||+|++..+|+.|++.+.... ...++|+.|.+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999998654433 356678777655543
No 178
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=52.76 E-value=12 Score=33.03 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v 128 (291)
.....+||+-|||..+|++.|.++.+++|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3466799999999999999999999999876644
No 179
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=49.23 E-value=51 Score=32.56 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHH----hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~----~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
..|.++.-....+.-+|..+|. .+|.|.++.|...+.-....+.++.|.+.++|..|+..+.
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3444443222233457778775 6788888888776644445678899999999999988764
No 180
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=48.52 E-value=5.8 Score=39.52 Aligned_cols=8 Identities=63% Similarity=0.655 Sum_probs=3.6
Q ss_pred HHHHHhCC
Q 022827 154 AALKRYNN 161 (291)
Q Consensus 154 ~Ai~~lng 161 (291)
.|++..++
T Consensus 429 ~aLkt~~N 436 (556)
T PF05918_consen 429 TALKTTNN 436 (556)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 44444444
No 181
>PF14893 PNMA: PNMA
Probab=48.22 E-value=20 Score=33.52 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEee---CCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHF---DKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~-~G~v~~v~i~~---d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
+.-+.|.|.+||.+|++++|++.+.. +-++-.++|.. .+.-. .--|+|+|...-+-...=.. +.-+|-+.+|
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e~~n~~~iP~~---i~g~gg~W~V 91 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAEDVNYSLIPRE---IPGKGGPWRV 91 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeecccccchhhCchh---cCCCCCceEE
Confidence 56688999999999999999998753 33333333322 22112 33688998754332221111 1224557777
Q ss_pred EEecCCCCCcc
Q 022827 172 EVVGTNAEIPL 182 (291)
Q Consensus 172 ~~a~~~~~~~~ 182 (291)
-+..+.++...
T Consensus 92 v~~p~~~D~e~ 102 (331)
T PF14893_consen 92 VFKPPAPDAEF 102 (331)
T ss_pred EecCCCCCHHH
Confidence 77666554433
No 182
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.01 E-value=40 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHH
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELF 119 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F 119 (291)
...++|.|+|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356899999999999999998653
No 183
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.00 E-value=53 Score=29.82 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=45.2
Q ss_pred CCCcEEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEeeC-C-----CCCC-----ceEE---------E
Q 022827 96 EVGTKLYVSNLHPG------------VTNDDIRELFSEIGELKRYAIHFD-K-----NGRP-----SGSA---------E 143 (291)
Q Consensus 96 ~~~~~l~V~nL~~~------------~te~dL~~~F~~~G~v~~v~i~~d-~-----tg~~-----kG~a---------f 143 (291)
+...|||+..||-. .+++-|...|+.||.|..|.|... + +++. .+|+ |
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34457777777632 467789999999999998877542 1 3433 3333 4
Q ss_pred EEEcCHHHHHHHHHHhCCcee
Q 022827 144 VVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 144 V~F~~~~~A~~Ai~~lng~~l 164 (291)
|.|........|+..|.+..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 566666666677777777543
No 184
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=42.32 E-value=1.5e+02 Score=22.31 Aligned_cols=68 Identities=13% Similarity=0.312 Sum_probs=37.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhc--------CCeeEEEE------eeCCCCCCce-EEEEEEcCHHHHHHHHHHhCCcee
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEI--------GELKRYAI------HFDKNGRPSG-SAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~--------G~v~~v~i------~~d~tg~~kG-~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
++|| |.++++++++.++.+.+ |.|.++.. .+.-....+| |.++.|.-..++.+.++.. ..+
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~--lri 85 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA--LKL 85 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH--hCC
Confidence 5566 57777887766554443 35554432 1111334455 5778888766666666542 345
Q ss_pred CCeeeEE
Q 022827 165 DGKPMKI 171 (291)
Q Consensus 165 ~g~~i~V 171 (291)
+...|+-
T Consensus 86 ~e~VlR~ 92 (97)
T CHL00123 86 DENVLRY 92 (97)
T ss_pred CCCeEEE
Confidence 5555443
No 185
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.92 E-value=14 Score=35.11 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCCH--------HHHHHHHHh--cCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTN--------DDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157 (291)
Q Consensus 99 ~~l~V~nL~~~~te--------~dL~~~F~~--~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~ 157 (291)
+.+|+.+.....+. ++|...|.. .+++..|....+. +..+.|..||+|...+.|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45566655554443 489999987 5677777777776 77788999999999999999883
No 186
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.41 E-value=80 Score=23.41 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 147 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~ 147 (291)
+...-|||+|++..+-|.-.+.+.+..++= ++.+++.... ..||.|-++-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCC-CCCEEEEEeC
Confidence 456789999999888765555555544332 3444444333 6789998873
No 187
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.23 E-value=60 Score=24.17 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.2
Q ss_pred EEEEEcCHHHHHHHHHHhC-CceeCCeeeEEEEec
Q 022827 142 AEVVYARRSDAFAALKRYN-NVLLDGKPMKIEVVG 175 (291)
Q Consensus 142 afV~F~~~~~A~~Ai~~ln-g~~l~g~~i~V~~a~ 175 (291)
|.|+|.++.-|+..++.-. ...++...+.|....
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe
Confidence 6899999999999886432 245677776666543
No 188
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=34.99 E-value=1.6e+02 Score=22.56 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCeeEEEEeeCC--CC--------------CCceEEEEEEcCHHHHHHHHHHh
Q 022827 114 DIRELFSEIGELKRYAIHFDK--NG--------------RPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 114 dL~~~F~~~G~v~~v~i~~d~--tg--------------~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
...++|.+||.+..+...-+. .| ..--|.+|+|.+.+...++..++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 345789999988766554332 22 23458999999999999888765
No 189
>PF12643 MazG-like: MazG-like family
Probab=34.34 E-value=13 Score=28.31 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=14.4
Q ss_pred CCCcCCCC---hHHHHHhc
Q 022827 1 MATHVDMS---LDDIIKSR 16 (291)
Q Consensus 1 m~~~ld~s---Lddii~~~ 16 (291)
||++|+.+ ||++|.++
T Consensus 51 La~rLGid~~~lD~~i~~K 69 (98)
T PF12643_consen 51 LADRLGIDFRELDEIIKEK 69 (98)
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 68999999 99999977
No 190
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=33.73 E-value=1.2e+02 Score=24.79 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=34.3
Q ss_pred EEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 022827 102 YVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (291)
Q Consensus 102 ~V~nL~~~~te~dL~~~F~~-~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (291)
||--++...+-.+|++.++. |+ .|..|..+.-+.+.- -|||.+....+|....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 33346778899999998876 53 445565555444433 4999997766654433
No 191
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=33.32 E-value=19 Score=36.31 Aligned_cols=72 Identities=25% Similarity=0.240 Sum_probs=54.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
.+||+.|-...-+..-|..++..+.+++.+.++..- .+....-++++|..+..++.|. .|.++.+....+++
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 489999999888888999999999988877666554 5555557999999998876665 66666665554444
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=33.16 E-value=63 Score=29.11 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~ 131 (291)
.....|+||||++|..-|..++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4567799999999999999999875444333333
No 193
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.94 E-value=81 Score=22.95 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=24.5
Q ss_pred CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCce
Q 022827 124 ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (291)
Q Consensus 124 ~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~ 163 (291)
.|.++....+ .+||-|||=.+.+++..|++.+.+..
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4555544433 58999999999999999998776644
No 194
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.28 E-value=91 Score=27.90 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=45.2
Q ss_pred CcEEEEcCCCCC-----CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc---CHHHHHHHHHHhCCceeCCeee
Q 022827 98 GTKLYVSNLHPG-----VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 98 ~~~l~V~nL~~~-----~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~lng~~l~g~~i 169 (291)
..+|.|.|++.. .+.++|.+++..+.....+.++.| .+.+++.-. +.+....+++.+....-..+..
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lD-----t~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~ 211 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLD-----TCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLK 211 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEE-----hhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhhee
Confidence 478999999743 588999999998876567888888 344444322 3555666666554322113444
Q ss_pred EEEEe
Q 022827 170 KIEVV 174 (291)
Q Consensus 170 ~V~~a 174 (291)
.|.+.
T Consensus 212 ~vHl~ 216 (274)
T TIGR00587 212 AIHLN 216 (274)
T ss_pred EEEEE
Confidence 44443
No 195
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=32.25 E-value=1.2e+02 Score=30.40 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=38.2
Q ss_pred CCHHHHHHHH----HhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 110 VTNDDIRELF----SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 110 ~te~dL~~~F----~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
.+.-||..+| ..+|.|.++.|...+--....++++.|.+.++|.+|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 3446788887 26888888888766544446688999999999998887653
No 196
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=31.77 E-value=1.2e+02 Score=29.01 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=42.3
Q ss_pred CcEEEEcC-CCCCCCHHHHHHHHH----hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 98 GTKLYVSN-LHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 98 ~~~l~V~n-L~~~~te~dL~~~F~----~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
+..+.++. .+...+..+|..+|. .+|-|.++.+...+.-....+.++.|.+.++|.+|+..+.
T Consensus 131 G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 131 GEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 34444432 223344457888874 4788888888777644456677889999999999986653
No 197
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.21 E-value=35 Score=24.65 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCee
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELK 126 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~ 126 (291)
.+--+.||=.+++.+.|..||..-|+.+
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 3444668888999999999999999764
No 198
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.95 E-value=2.2e+02 Score=20.99 Aligned_cols=57 Identities=11% Similarity=0.321 Sum_probs=34.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHH-hcCCee--EEEEe-eCCCCCCceEEEEEEcCHHHHHHHHHHhCC
Q 022827 100 KLYVSNLHPGVTNDDIRELFS-EIGELK--RYAIH-FDKNGRPSGSAEVVYARRSDAFAALKRYNN 161 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~-~~G~v~--~v~i~-~d~tg~~kG~afV~F~~~~~A~~Ai~~lng 161 (291)
-|+|..++..++-++|.+... .|.-.. ...|. .|..|.+ |+|.+.++.+.|+..+.-
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp-----~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDP-----CTISSQMELEEAFRLYEL 70 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCc-----eeecCHHHHHHHHHHHHh
Confidence 477888888888877654432 222111 22222 2334543 788999999999976643
No 199
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.79 E-value=37 Score=20.86 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHHhcC
Q 022827 108 PGVTNDDIRELFSEIG 123 (291)
Q Consensus 108 ~~~te~dL~~~F~~~G 123 (291)
.++++++|+++|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998753
No 200
>COG4907 Predicted membrane protein [Function unknown]
Probab=29.95 E-value=50 Score=32.20 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 022827 150 SDAFAALKRY 159 (291)
Q Consensus 150 ~~A~~Ai~~l 159 (291)
+.+.+|++.+
T Consensus 526 dkVvkam~~~ 535 (595)
T COG4907 526 DKVVKAMRKA 535 (595)
T ss_pred HHHHHHHHHh
Confidence 3344444433
No 201
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.14 E-value=47 Score=32.82 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=34.3
Q ss_pred ceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 139 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 139 kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
..+++++|++.+.+.+|+..+++..+.+..+.|.+.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 4699999999999999999999999988888887765443
No 202
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=26.89 E-value=1.6e+02 Score=21.89 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=33.1
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCC-----CC----CCceEEEEEEcCHHHHHHHHHHhC
Q 022827 111 TNDDIRELFSEIGELKRYAIHFDK-----NG----RPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 111 te~dL~~~F~~~G~v~~v~i~~d~-----tg----~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
.+-+++.+++.||.-.++--+.++ .+ --||+.=|+|-.+++.+..++.+.
T Consensus 32 d~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 32 DHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred CceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 444689999999975543222111 01 126777899999999998887753
No 203
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.61 E-value=82 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.6
Q ss_pred EEEEEEcCHHHHHHHHHHhCCcee
Q 022827 141 SAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 141 ~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
+.+|+|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999887765433
No 204
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=25.56 E-value=29 Score=31.07 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCCCcEEEEcCCCCCCCHHH-H--HHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDD-I--RELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~d-L--~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
.+.-..+++.|+-..+..+- | ...|+.|-.+....++.+.-+.-..++|+.|.......++...-+.+.+.-.+|++
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 34445777888877776665 3 77888888888888888877777889999998777666666555555555555554
Q ss_pred E
Q 022827 172 E 172 (291)
Q Consensus 172 ~ 172 (291)
.
T Consensus 173 a 173 (290)
T KOG0226|consen 173 A 173 (290)
T ss_pred c
Confidence 3
No 205
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=25.38 E-value=2.4e+02 Score=19.69 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=36.9
Q ss_pred EEEcCCCCCCCHHHHHHHHH-hcCCe-eEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 101 LYVSNLHPGVTNDDIRELFS-EIGEL-KRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~-~~G~v-~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
+++-.|+..++-++|..... .|... ..+.|.+.. .+ -+|...+.++...|++.+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 33444777889999877664 56432 245554432 22 3899999999999998764
No 206
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=24.66 E-value=1.7e+02 Score=24.80 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=7.4
Q ss_pred CcEEEEcCCCCC
Q 022827 98 GTKLYVSNLHPG 109 (291)
Q Consensus 98 ~~~l~V~nL~~~ 109 (291)
++.+.|++|-.+
T Consensus 5 N~V~LiGrLg~D 16 (182)
T PRK06958 5 NKVILVGNLGAD 16 (182)
T ss_pred cEEEEEEEecCC
Confidence 456677777543
No 207
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.39 E-value=25 Score=24.69 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 113 ~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
++|++.|..+.....+ + +=.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~--v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--V-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhh--h-------hhhhccCCCCHHHHHHHHHHhh
Confidence 5788877654433321 1 2248999999999988886653
No 208
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=24.18 E-value=1.2e+02 Score=28.43 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCcEEEEcCCCC----CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHH
Q 022827 97 VGTKLYVSNLHP----GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157 (291)
Q Consensus 97 ~~~~l~V~nL~~----~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~ 157 (291)
....|||.|=.- .++.++|+.+.+.... .+.|+.| -||++|.. +++...+.
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD-------EAY~eF~~-~~~~~l~~ 199 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID-------EAYIEFSP-ESSLELLK 199 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe-------CchhhcCC-chhhhhcc
Confidence 457888886422 3778999999998766 4456666 39999998 44444443
No 209
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=24.04 E-value=1.6e+02 Score=22.22 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=43.8
Q ss_pred CCCcEEEEcCCCCCCC--HHHHHHHHHhcCCeeEEEEeeCC--CCCCceEEEEEEcC--HHHHHHHHHHhCCcee-CCee
Q 022827 96 EVGTKLYVSNLHPGVT--NDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYAR--RSDAFAALKRYNNVLL-DGKP 168 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~t--e~dL~~~F~~~G~v~~v~i~~d~--tg~~kG~afV~F~~--~~~A~~Ai~~lng~~l-~g~~ 168 (291)
..+.+|.|+-.....+ .+.|.++|++...|..+.+..-. ...+.-+--|+|.. .+....+|..+-...+ ++.+
T Consensus 3 ~~g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (108)
T PF14581_consen 3 PKGEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWP 82 (108)
T ss_pred CCCCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCce
Confidence 3456677764433333 26788999999999876554333 34444455567766 2333333333322233 3366
Q ss_pred eEEEEecC
Q 022827 169 MKIEVVGT 176 (291)
Q Consensus 169 i~V~~a~~ 176 (291)
|.+.....
T Consensus 83 vd~~~~~~ 90 (108)
T PF14581_consen 83 VDFVLLDD 90 (108)
T ss_pred EEEEEccC
Confidence 66665553
No 210
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=23.96 E-value=2.6e+02 Score=19.48 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCC--CCCCceEEEEEEc-CHHHHHHHHHHhCC
Q 022827 112 NDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYA-RRSDAFAALKRYNN 161 (291)
Q Consensus 112 e~dL~~~F~~~G~v~~v~i~~d~--tg~~kG~afV~F~-~~~~A~~Ai~~lng 161 (291)
-.++-++|+.++ |.-.+|..-+ .....=+-||+|+ ..++.++||+.|..
T Consensus 14 L~~vL~~f~~~~-iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFG-VNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCC-CcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456777788775 3333333333 2222334567776 55667788877754
No 211
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=23.68 E-value=2.5e+02 Score=19.27 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcC---HHHHHHHHHHhCC
Q 022827 112 NDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYAR---RSDAFAALKRYNN 161 (291)
Q Consensus 112 e~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~---~~~A~~Ai~~lng 161 (291)
-.++-++|+.++ .|.+|.-...+.....-.-||++.. ....+.+++.+..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 467778888875 4555533333332334466788774 5566677776643
No 212
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=23.33 E-value=1.7e+02 Score=21.90 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEE--ee-CCCCCCceEEEEEEc
Q 022827 100 KLYVSNLHPGVTNDDIR---ELFSEIGELKRYAI--HF-DKNGRPSGSAEVVYA 147 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~---~~F~~~G~v~~v~i--~~-d~tg~~kG~afV~F~ 147 (291)
..|+.|||..+.+..+. ++|..+.+-..|.+ .. .....+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 46899999999887765 44545543344443 11 225566676655443
No 213
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.29 E-value=2.1e+02 Score=27.08 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHhc-CCee---EEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 110 VTNDDIRELFSEI-GELK---RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 110 ~te~dL~~~F~~~-G~v~---~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
+|-.+++++|..- -.|. ....+.|..--+.-+-||+..+.+++..||+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 4667899999742 1221 1122344455566789999999999999998763
No 214
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=23.12 E-value=29 Score=24.07 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhc
Q 022827 278 DKELDNYHAEAMQ 290 (291)
Q Consensus 278 d~el~~y~~~~~~ 290 (291)
+.|||.|..+||+
T Consensus 35 nseleeWl~~e~E 47 (65)
T PF08599_consen 35 NSELEEWLRQEME 47 (65)
T ss_pred cccHHHHHHHHHH
Confidence 6789999999996
No 215
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=2.9e+02 Score=21.27 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 022827 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (291)
Q Consensus 113 ~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (291)
.+|.++++++| |.+..|..+.. .+.-|+++++.+.+..-++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~-~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE-ENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC-cccEEEEEEEcChHHHHHHH
Confidence 35778888886 56566666641 12569999999555544444
No 216
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=22.80 E-value=2.2e+02 Score=18.22 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCe
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGEL 125 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v 125 (291)
..++|.+.....+.++|++++..+|-.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877688899999999999863
No 217
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.55 E-value=2.5e+02 Score=18.80 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 112 NDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 112 e~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
-.+|-++|.+.+ .|.++.+..... +.+.-+.+.+.+.|.++|+.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH
Confidence 367778887766 566665543322 45666667777777777754
No 218
>PRK10905 cell division protein DamX; Validated
Probab=22.32 E-value=2e+02 Score=26.73 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=38.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEE--EEcCHHHHHHHHHHhCCc
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEV--VYARRSDAFAALKRYNNV 162 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV--~F~~~~~A~~Ai~~lng~ 162 (291)
.+|-|.-+. +++.|++|..+.+ +....+.... +|+. .|..+ .|.+.++|++||+.|.-.
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHH
Confidence 455555544 7788998888875 4433333332 4542 34443 799999999999998643
No 219
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=22.31 E-value=1.3e+02 Score=27.40 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=19.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHh--cC--CeeE-EEEeeCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSE--IG--ELKR-YAIHFDK 134 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~--~G--~v~~-v~i~~d~ 134 (291)
..|.|--+..++-|+--..+|.+ .| ...+ |.|+.++
T Consensus 67 aVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~ 107 (271)
T COG1512 67 AVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAM 107 (271)
T ss_pred EEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEc
Confidence 34455555545555556678877 55 2222 4455554
No 220
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.01 E-value=1.4e+02 Score=22.61 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCH
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR 149 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~ 149 (291)
+...-|||++++..+-+.-.+.+-+.+++ -++.+++..+. ..||.|-++-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNT-ESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCC-CCCcEEEecCCC
Confidence 45678999999877765544444455543 33444443233 348999888653
No 221
>PHA01632 hypothetical protein
Probab=21.99 E-value=99 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.434 Sum_probs=16.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHh
Q 022827 101 LYVSNLHPGVTNDDIRELFSE 121 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~ 121 (291)
|.|..+|..-||++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445688999999999887653
No 222
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.98 E-value=2.6e+02 Score=22.90 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh
Q 022827 105 NLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 105 nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
.|+..+.++-|+++.+..|.|.... -+| ..+.|-+.+...+|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D--------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD--------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc--------EEEEeccHHHHHHHHHHH
Confidence 3777888899999999998887654 333 466788999999999876
No 223
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=21.80 E-value=1.1e+02 Score=29.32 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHH----hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 022827 105 NLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (291)
Q Consensus 105 nL~~~~te~dL~~~F~----~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (291)
+|-.+-|--||+.||- ..|.|..|.|+..+.-++.-.||+-.++.+++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 4555666778999993 567888999988876666778999888887777654
No 224
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=21.04 E-value=3.3e+02 Score=19.70 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHH-HhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 105 NLHPGVTNDDIRELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 105 nL~~~~te~dL~~~F-~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
-+|.-+.-+||..-. ..||.-.++....+ --.|-..+.++..+||+.++. .-.-+.|+|-+.
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~-------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL~ 77 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN-------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILLS 77 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc-------cEEEeccCHHHHHHHHHHHcc-CccccceeEeEe
Confidence 356667778876655 58998776655543 267888899999999988876 444556666554
No 225
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.94 E-value=86 Score=27.87 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHH
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFS 120 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~ 120 (291)
....++|+|||+.++..-|.+++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 457889999999999999999987
No 226
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.93 E-value=88 Score=28.59 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhc
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEI 122 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~ 122 (291)
.+.|.|||+.++...|.+++...
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~ 125 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHR 125 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcC
Confidence 47789999999999999888653
No 227
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=20.75 E-value=89 Score=32.80 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=47.9
Q ss_pred cEEEEcCCCCCCCHHHHHH--HHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 99 TKLYVSNLHPGVTNDDIRE--LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~--~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.+|.|.-|..+.+.+.|.+ +.+.|.+|+++++++.. ....+|+|..++- .. + -.-+..+.|+.|+|-
T Consensus 176 ~~vR~~R~T~ds~s~~l~n~t~~~s~tEiID~k~~YPN----tAlvgl~vdaeQF-gs-~-~t~~y~~rGrii~VP 244 (952)
T COG4733 176 FNIRMRRETADSTSDQLQNKTLWSSYTEIIDVKQCYPN----TALVGLQVDAEQF-GG-Q-PTVNYHIRGRIIQVP 244 (952)
T ss_pred ceEEEEEecCCCchhhhhcchhhhhhhheeeccccCCC----ceEEEEEEcHHHh-CC-c-ceeEEeecceEEeCC
Confidence 7888888888888888864 56899999999999874 4467778764322 21 1 122456788888874
Done!