Query 022827
Match_columns 291
No_of_seqs 428 out of 2425
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3j_A RNA and export factor b 100.0 3.2E-34 1.1E-38 242.2 15.6 154 1-178 15-168 (177)
2 3ulh_A THO complex subunit 4; 99.9 1.9E-22 6.4E-27 155.4 12.5 101 73-175 6-106 (107)
3 4fxv_A ELAV-like protein 1; RN 99.9 4.2E-22 1.4E-26 152.1 12.0 81 96-176 17-98 (99)
4 3q2s_C Cleavage and polyadenyl 99.9 5.6E-23 1.9E-27 180.1 6.1 82 97-178 67-151 (229)
5 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.4E-21 8.3E-26 159.4 13.5 85 94-178 35-120 (156)
6 2kt5_A RNA and export factor-b 99.9 5.1E-21 1.8E-25 151.5 12.8 104 74-179 13-116 (124)
7 3s8s_A Histone-lysine N-methyl 99.9 5.1E-21 1.7E-25 148.9 12.3 83 96-178 4-87 (110)
8 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-20 4.3E-25 139.5 11.7 82 96-177 4-86 (87)
9 2dnz_A Probable RNA-binding pr 99.8 2.3E-20 7.8E-25 140.5 12.1 83 96-178 3-86 (95)
10 1whw_A Hypothetical protein ri 99.8 2.7E-20 9.4E-25 141.2 12.4 86 94-179 4-90 (99)
11 2dgs_A DAZ-associated protein 99.8 3.4E-20 1.1E-24 140.8 12.6 86 93-179 5-91 (99)
12 2lxi_A RNA-binding protein 10; 99.8 5.1E-21 1.8E-25 143.7 7.6 81 98-178 1-84 (91)
13 1x5s_A Cold-inducible RNA-bind 99.8 2.9E-20 9.8E-25 141.9 11.9 86 93-178 7-93 (102)
14 2dnm_A SRP46 splicing factor; 99.8 1.4E-20 4.9E-25 143.9 10.1 86 93-178 8-94 (103)
15 2cpz_A CUG triplet repeat RNA- 99.8 2.9E-20 1E-24 145.1 12.0 84 96-179 23-107 (115)
16 2do4_A Squamous cell carcinoma 99.8 4E-20 1.4E-24 140.6 12.4 84 95-178 14-97 (100)
17 2cq0_A Eukaryotic translation 99.8 3.3E-20 1.1E-24 141.9 11.6 84 95-178 12-96 (103)
18 2jrs_A RNA-binding protein 39; 99.8 1.9E-20 6.5E-25 145.0 10.2 87 92-178 20-107 (108)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.9E-20 9.8E-25 141.9 10.7 85 95-179 9-94 (102)
20 2dgo_A Cytotoxic granule-assoc 99.8 8E-20 2.7E-24 142.5 13.4 86 95-180 12-98 (115)
21 1x5u_A Splicing factor 3B subu 99.8 3.9E-20 1.3E-24 141.9 11.3 85 94-178 11-96 (105)
22 2dnh_A Bruno-like 5, RNA bindi 99.8 6.9E-20 2.4E-24 140.5 12.7 84 96-179 13-99 (105)
23 3md1_A Nuclear and cytoplasmic 99.8 6.2E-20 2.1E-24 134.5 11.9 81 98-178 1-82 (83)
24 2fy1_A RNA-binding motif prote 99.8 8.3E-20 2.8E-24 143.2 13.3 83 96-178 5-87 (116)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.5E-20 1.2E-24 136.5 10.5 81 95-175 4-85 (85)
26 2do0_A HnRNP M, heterogeneous 99.8 1.4E-19 4.7E-24 140.9 14.4 84 95-178 12-95 (114)
27 2lkz_A RNA-binding protein 5; 99.8 1.3E-20 4.5E-25 142.8 8.3 83 94-176 5-94 (95)
28 2cqc_A Arginine/serine-rich sp 99.8 4.6E-20 1.6E-24 138.7 11.3 82 95-176 12-94 (95)
29 2e5h_A Zinc finger CCHC-type a 99.8 4E-20 1.4E-24 138.9 10.8 81 95-175 13-94 (94)
30 1p27_B RNA-binding protein 8A; 99.8 4.8E-20 1.6E-24 141.6 11.3 86 93-178 18-104 (106)
31 1x4h_A RNA-binding protein 28; 99.8 6.5E-20 2.2E-24 141.9 12.1 86 94-179 11-103 (111)
32 2ywk_A Putative RNA-binding pr 99.8 4.3E-20 1.5E-24 139.0 10.8 83 94-176 12-94 (95)
33 2dgv_A HnRNP M, heterogeneous 99.8 6.7E-20 2.3E-24 137.1 11.5 85 93-178 3-87 (92)
34 1x5t_A Splicing factor 3B subu 99.8 4.6E-20 1.6E-24 139.1 10.8 83 96-178 3-87 (96)
35 2cq3_A RNA-binding protein 9; 99.8 1.4E-19 4.9E-24 138.3 13.5 85 94-179 11-95 (103)
36 3ex7_B RNA-binding protein 8A; 99.8 3.8E-20 1.3E-24 146.6 10.5 87 92-178 16-103 (126)
37 2x1f_A MRNA 3'-END-processing 99.8 7.8E-20 2.7E-24 138.1 11.5 83 97-179 1-84 (96)
38 2la6_A RNA-binding protein FUS 99.8 7.7E-20 2.6E-24 138.9 11.5 84 92-175 7-99 (99)
39 2cqd_A RNA-binding region cont 99.8 1.5E-19 5E-24 141.3 13.4 84 94-178 13-97 (116)
40 4f25_A Polyadenylate-binding p 99.8 6.2E-20 2.1E-24 143.6 11.2 81 97-178 4-84 (115)
41 3p5t_L Cleavage and polyadenyl 99.8 1.1E-20 3.9E-25 141.2 6.5 81 99-179 2-85 (90)
42 2cph_A RNA binding motif prote 99.8 9.4E-20 3.2E-24 140.1 11.7 85 94-178 11-98 (107)
43 2dgp_A Bruno-like 4, RNA bindi 99.8 7.7E-20 2.6E-24 140.4 11.2 85 94-178 9-97 (106)
44 2d9p_A Polyadenylate-binding p 99.8 9E-20 3.1E-24 139.5 11.4 84 95-179 12-95 (103)
45 2div_A TRNA selenocysteine ass 99.8 1E-19 3.5E-24 138.0 11.3 85 94-178 5-95 (99)
46 1oo0_B CG8781-PA, drosophila Y 99.8 8.8E-20 3E-24 141.2 11.1 87 92-178 20-107 (110)
47 2dng_A Eukaryotic translation 99.8 1.6E-19 5.6E-24 138.1 11.8 83 94-178 11-94 (103)
48 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-19 4.2E-24 139.0 11.1 83 95-179 12-96 (104)
49 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-19 6.5E-24 136.2 12.0 83 94-178 5-91 (96)
50 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.2E-19 1.1E-23 136.4 13.2 84 94-178 11-94 (103)
51 2cpe_A RNA-binding protein EWS 99.8 1.2E-19 4.2E-24 141.0 11.0 84 95-178 12-104 (113)
52 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-19 6.4E-24 145.1 12.4 85 94-178 38-123 (139)
53 2dgw_A Probable RNA-binding pr 99.8 2.8E-19 9.6E-24 133.6 12.5 83 94-178 6-88 (91)
54 2cpf_A RNA binding motif prote 99.8 1.5E-19 5E-24 136.9 10.9 83 96-178 3-89 (98)
55 2dhg_A TRNA selenocysteine ass 99.8 1.1E-19 3.8E-24 139.1 10.2 85 94-178 5-91 (104)
56 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-19 3.8E-24 139.9 10.0 81 95-180 13-95 (105)
57 2dh8_A DAZ-associated protein 99.8 1.2E-19 4E-24 139.3 9.8 85 94-179 12-97 (105)
58 2cqp_A RNA-binding protein 12; 99.8 9.8E-20 3.3E-24 137.9 9.1 83 95-177 12-95 (98)
59 1x4c_A Splicing factor, argini 99.8 4.3E-19 1.5E-23 137.1 12.9 80 93-178 10-94 (108)
60 3pgw_S U1-70K; protein-RNA com 99.8 4E-19 1.4E-23 169.4 15.2 84 96-179 100-184 (437)
61 4a8x_A RNA-binding protein wit 99.8 2E-19 6.7E-24 133.2 10.2 82 97-178 3-86 (88)
62 2kxn_B Transformer-2 protein h 99.8 1.2E-19 3.9E-24 145.1 9.5 85 94-178 42-127 (129)
63 3ns6_A Eukaryotic translation 99.8 4.6E-20 1.6E-24 140.8 6.5 81 97-177 5-93 (100)
64 2ek1_A RNA-binding protein 12; 99.8 7.5E-20 2.6E-24 137.6 7.5 80 96-175 13-93 (95)
65 2khc_A Testis-specific RNP-typ 99.8 1.5E-19 5.1E-24 141.6 9.4 81 95-175 37-118 (118)
66 3ucg_A Polyadenylate-binding p 99.8 3.8E-19 1.3E-23 132.0 11.0 79 98-177 6-85 (89)
67 3s7r_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 131.3 11.2 80 94-174 7-87 (87)
68 2cqg_A TDP-43, TAR DNA-binding 99.8 8E-19 2.8E-23 134.1 12.9 84 94-179 11-95 (103)
69 1x4a_A Splicing factor, argini 99.8 5.4E-19 1.9E-23 136.5 12.1 82 95-178 19-100 (109)
70 1p1t_A Cleavage stimulation fa 99.8 9.3E-20 3.2E-24 139.4 7.1 84 96-179 6-90 (104)
71 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.7E-19 1.9E-23 146.7 12.1 86 93-178 67-153 (165)
72 2dgu_A Heterogeneous nuclear r 99.8 1.3E-18 4.5E-23 133.1 13.0 81 92-179 5-85 (103)
73 1wez_A HnRNP H', FTP-3, hetero 99.8 2.4E-19 8.1E-24 137.5 8.8 82 95-178 12-93 (102)
74 1s79_A Lupus LA protein; RRM, 99.8 2.7E-19 9.4E-24 137.5 9.1 80 96-176 9-88 (103)
75 3r27_A HnRNP L, heterogeneous 99.8 4.9E-19 1.7E-23 135.0 10.4 79 94-177 17-97 (100)
76 3n9u_C Cleavage and polyadenyl 99.8 5.7E-19 2E-23 145.7 11.6 81 97-177 54-137 (156)
77 2dnq_A RNA-binding protein 4B; 99.8 9.4E-19 3.2E-23 130.5 11.5 79 93-178 3-81 (90)
78 2wbr_A GW182, gawky, LD47780P; 99.8 4.6E-19 1.6E-23 131.3 9.5 74 97-175 6-79 (89)
79 1wg5_A Heterogeneous nuclear r 99.8 4.7E-19 1.6E-23 136.1 9.8 83 95-178 12-95 (104)
80 1x4e_A RNA binding motif, sing 99.8 8.2E-20 2.8E-24 134.7 5.2 79 96-174 3-82 (85)
81 2rs2_A Musashi-1, RNA-binding 99.8 6.2E-19 2.1E-23 136.6 10.4 84 95-179 22-106 (109)
82 2dis_A Unnamed protein product 99.8 7.6E-19 2.6E-23 135.5 10.8 84 96-179 6-94 (109)
83 1why_A Hypothetical protein ri 99.8 9.7E-19 3.3E-23 132.3 11.0 79 95-178 14-94 (97)
84 2db1_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 139.5 9.3 83 95-178 14-99 (118)
85 2err_A Ataxin-2-binding protei 99.8 7.2E-19 2.5E-23 136.2 10.2 84 93-177 24-107 (109)
86 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-18 4.1E-23 143.2 12.1 84 95-178 67-151 (158)
87 2cq1_A PTB-like protein L; RRM 99.8 1.4E-18 4.8E-23 133.1 11.5 80 95-179 12-93 (101)
88 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.7E-23 134.4 10.9 79 95-178 12-92 (104)
89 2dgt_A RNA-binding protein 30; 99.8 2E-18 7E-23 129.2 12.1 79 93-178 5-83 (92)
90 1x4d_A Matrin 3; structural ge 99.8 4.1E-19 1.4E-23 136.3 8.3 78 96-178 13-93 (102)
91 2fc9_A NCL protein; structure 99.8 1E-18 3.6E-23 133.0 10.6 82 94-178 11-92 (101)
92 2cpy_A RNA-binding protein 12; 99.8 5E-19 1.7E-23 138.1 8.9 82 96-178 13-95 (114)
93 2ad9_A Polypyrimidine tract-bi 99.8 1E-18 3.4E-23 137.6 10.5 81 94-179 27-109 (119)
94 2lea_A Serine/arginine-rich sp 99.8 2.4E-19 8.3E-24 144.3 7.1 84 95-178 44-128 (135)
95 2cpi_A CCR4-NOT transcription 99.8 5.4E-19 1.9E-23 137.3 8.7 84 95-178 12-102 (111)
96 1x4b_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 136.4 10.3 81 97-178 26-107 (116)
97 1x5o_A RNA binding motif, sing 99.8 1.4E-18 4.9E-23 135.1 11.0 82 96-177 23-112 (114)
98 2cq4_A RNA binding motif prote 99.8 6.3E-19 2.2E-23 137.3 8.8 81 97-178 24-105 (114)
99 2mss_A Protein (musashi1); RNA 99.8 4E-19 1.4E-23 127.9 7.1 74 100-174 1-75 (75)
100 2m2b_A RNA-binding protein 10; 99.8 3.3E-19 1.1E-23 142.6 7.2 83 95-178 20-109 (131)
101 2a3j_A U1 small nuclear ribonu 99.8 1.6E-18 5.5E-23 138.1 11.1 84 93-178 24-111 (127)
102 2jvr_A Nucleolar protein 3; RN 99.8 1E-18 3.5E-23 136.1 9.7 81 95-178 25-106 (111)
103 2dnn_A RNA-binding protein 12; 99.8 7.2E-19 2.5E-23 136.5 8.7 79 97-177 15-93 (109)
104 2hgl_A HNRPF protein, heteroge 99.8 6.5E-19 2.2E-23 142.1 8.7 82 95-177 41-125 (136)
105 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-18 5.4E-23 139.3 10.9 80 95-174 60-140 (140)
106 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.3E-19 1.1E-23 135.9 6.5 84 93-178 14-99 (100)
107 2jwn_A Embryonic polyadenylate 99.8 1.4E-18 4.8E-23 137.2 10.4 81 97-178 35-116 (124)
108 2ki2_A SS-DNA binding protein 99.8 2.2E-19 7.6E-24 133.8 5.4 80 99-179 2-82 (90)
109 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.2E-19 1.1E-23 128.8 6.1 75 99-174 1-76 (77)
110 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.4E-23 127.3 10.3 78 93-175 7-85 (85)
111 2dnp_A RNA-binding protein 14; 99.8 2.9E-18 9.9E-23 127.9 11.3 78 94-178 5-82 (90)
112 2cpx_A Hypothetical protein FL 99.8 4.4E-19 1.5E-23 138.2 7.1 85 95-179 22-107 (115)
113 2nlw_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 135.2 7.9 83 94-177 11-100 (105)
114 2hgm_A HNRPF protein, heteroge 99.8 6.3E-19 2.2E-23 140.3 7.7 99 76-176 15-120 (126)
115 2cpj_A Non-POU domain-containi 99.8 1.9E-18 6.6E-23 131.1 10.1 79 95-178 12-90 (99)
116 2fc8_A NCL protein; structure 99.8 2.6E-18 8.8E-23 131.0 10.8 82 94-178 11-93 (102)
117 1x4g_A Nucleolysin TIAR; struc 99.8 3.4E-18 1.2E-22 132.1 11.4 79 96-179 23-101 (109)
118 1wel_A RNA-binding protein 12; 99.8 4.3E-19 1.5E-23 140.5 6.1 82 96-178 23-105 (124)
119 2e5j_A Methenyltetrahydrofolat 99.8 3.1E-18 1.1E-22 129.6 10.2 80 95-178 16-95 (97)
120 2cqh_A IGF-II mRNA-binding pro 99.8 2.2E-18 7.4E-23 129.3 9.0 79 94-178 4-84 (93)
121 1nu4_A U1A RNA binding domain; 99.8 1.3E-18 4.4E-23 131.3 7.5 84 94-179 4-91 (97)
122 2cpd_A Apobec-1 stimulating pr 99.8 9.5E-18 3.2E-22 127.3 12.3 78 94-178 11-90 (99)
123 1fj7_A Nucleolin RBD1, protein 99.8 4E-19 1.4E-23 135.3 4.5 81 96-178 15-96 (101)
124 2hvz_A Splicing factor, argini 99.8 2.5E-18 8.6E-23 130.9 9.0 76 99-178 1-76 (101)
125 2xnq_A Nuclear polyadenylated 99.7 9.5E-18 3.3E-22 127.2 11.6 78 93-177 17-95 (97)
126 3beg_B Splicing factor, argini 99.7 2.7E-18 9.1E-23 134.3 8.7 75 95-175 13-92 (115)
127 2lmi_A GRSF-1, G-rich sequence 99.7 1E-18 3.4E-23 134.9 6.0 83 94-177 7-92 (107)
128 2la4_A Nuclear and cytoplasmic 99.7 3.5E-18 1.2E-22 130.1 8.9 76 96-176 25-100 (101)
129 2krb_A Eukaryotic translation 99.7 1.6E-18 5.4E-23 126.8 6.6 73 98-171 1-80 (81)
130 2kvi_A Nuclear polyadenylated 99.7 4.6E-18 1.6E-22 128.5 9.3 78 94-178 6-84 (96)
131 2jvo_A Nucleolar protein 3; nu 99.7 6.7E-18 2.3E-22 130.6 10.3 78 94-178 27-104 (108)
132 1x4f_A Matrin 3; structural ge 99.7 3.3E-18 1.1E-22 133.3 8.5 79 95-178 22-103 (112)
133 2dha_A FLJ20171 protein; RRM d 99.7 2.4E-18 8.2E-23 136.4 7.8 81 96-177 21-105 (123)
134 1whx_A Hypothetical protein ri 99.7 5.5E-18 1.9E-22 131.7 9.7 78 97-179 9-86 (111)
135 2hgn_A Heterogeneous nuclear r 99.7 7.3E-19 2.5E-23 142.3 4.8 81 96-178 44-124 (139)
136 3egn_A RNA-binding protein 40; 99.7 5.5E-18 1.9E-22 137.2 9.8 87 93-179 40-132 (143)
137 1iqt_A AUF1, heterogeneous nuc 99.7 1.5E-18 5E-23 124.8 5.6 74 100-174 1-75 (75)
138 4f02_A Polyadenylate-binding p 99.7 1.1E-17 3.9E-22 144.1 12.1 85 94-178 11-96 (213)
139 3lqv_A PRE-mRNA branch site pr 99.7 1E-17 3.4E-22 130.5 10.5 81 95-177 5-85 (115)
140 1fjc_A Nucleolin RBD2, protein 99.7 3.8E-18 1.3E-22 128.6 7.8 81 94-178 12-92 (96)
141 2xs2_A Deleted in azoospermia- 99.7 3.3E-18 1.1E-22 130.4 7.1 82 95-178 6-87 (102)
142 1wf1_A RNA-binding protein RAL 99.7 1.5E-17 5.2E-22 128.6 10.7 76 95-177 24-100 (110)
143 2e5g_A U6 snRNA-specific termi 99.7 1.8E-17 6.2E-22 124.6 10.3 77 96-178 6-83 (94)
144 2e44_A Insulin-like growth fac 99.7 1.5E-17 5E-22 125.3 9.7 82 94-178 11-93 (96)
145 2lcw_A RNA-binding protein FUS 99.6 3E-19 1E-23 139.6 0.0 83 96-178 5-96 (116)
146 2i2y_A Fusion protein consists 99.7 1.8E-17 6.2E-22 135.2 10.0 80 94-177 69-148 (150)
147 1x5p_A Negative elongation fac 99.7 5.9E-17 2E-21 122.5 12.0 76 96-178 13-88 (97)
148 1fxl_A Paraneoplastic encephal 99.7 4.6E-17 1.6E-21 133.3 12.3 82 97-178 1-83 (167)
149 1wg1_A KIAA1579 protein, homol 99.7 1.7E-17 5.7E-22 123.3 8.6 77 96-178 3-79 (88)
150 2cq2_A Hypothetical protein LO 99.7 2.3E-17 8E-22 128.7 9.1 80 94-178 21-107 (114)
151 2diu_A KIAA0430 protein; struc 99.7 5E-17 1.7E-21 121.6 10.1 79 95-182 5-89 (96)
152 2qfj_A FBP-interacting repress 99.7 5.9E-17 2E-21 138.6 12.2 84 96-179 123-207 (216)
153 3md3_A Nuclear and cytoplasmic 99.7 7.9E-17 2.7E-21 131.8 12.4 82 94-175 83-165 (166)
154 1sjr_A Polypyrimidine tract-bi 99.7 6E-17 2.1E-21 133.9 11.5 80 96-178 44-125 (164)
155 1b7f_A Protein (SXL-lethal pro 99.7 4.9E-17 1.7E-21 133.6 10.4 82 97-178 2-84 (168)
156 2j8a_A Histone-lysine N-methyl 99.7 3.1E-17 1.1E-21 129.5 8.6 78 99-176 3-95 (136)
157 2e5i_A Heterogeneous nuclear r 99.7 7.8E-17 2.7E-21 127.7 10.3 75 99-178 26-103 (124)
158 2hzc_A Splicing factor U2AF 65 99.7 6.8E-17 2.3E-21 119.2 9.0 71 96-172 4-85 (87)
159 1l3k_A Heterogeneous nuclear r 99.7 9.9E-17 3.4E-21 135.2 11.2 85 93-178 8-93 (196)
160 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-16 3.7E-21 127.7 10.7 79 96-178 26-107 (130)
161 3md3_A Nuclear and cytoplasmic 99.7 1.3E-16 4.6E-21 130.4 11.1 80 99-178 1-80 (166)
162 2yh0_A Splicing factor U2AF 65 99.7 2.1E-16 7.2E-21 133.4 12.0 83 96-178 112-195 (198)
163 2g4b_A Splicing factor U2AF 65 99.7 1.7E-16 5.8E-21 131.0 11.2 80 96-175 92-172 (172)
164 2dnl_A Cytoplasmic polyadenyla 99.7 1.4E-16 4.9E-21 124.1 9.8 80 95-177 5-88 (114)
165 4f02_A Polyadenylate-binding p 99.7 1.5E-16 5.2E-21 137.0 10.5 81 97-178 102-182 (213)
166 3d2w_A TAR DNA-binding protein 99.7 1E-16 3.5E-21 119.6 8.0 77 94-178 7-85 (89)
167 3tyt_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 135.8 11.0 78 97-178 3-81 (205)
168 1l3k_A Heterogeneous nuclear r 99.7 2.4E-16 8.2E-21 132.8 11.1 83 96-179 102-185 (196)
169 2cjk_A Nuclear polyadenylated 99.7 1.2E-16 4.2E-21 131.2 8.6 80 97-177 86-166 (167)
170 3nmr_A Cugbp ELAV-like family 99.7 4.2E-16 1.4E-20 128.7 11.0 80 96-175 93-175 (175)
171 2bz2_A Negative elongation fac 99.7 3.2E-16 1.1E-20 123.7 9.6 77 95-178 36-112 (121)
172 1wf0_A TDP-43, TAR DNA-binding 99.7 9.7E-17 3.3E-21 119.0 6.2 77 96-178 3-79 (88)
173 1b7f_A Protein (SXL-lethal pro 99.7 6.3E-16 2.1E-20 126.9 11.6 80 95-174 86-168 (168)
174 2qfj_A FBP-interacting repress 99.7 3.4E-16 1.2E-20 133.9 10.3 82 97-178 27-109 (216)
175 2pe8_A Splicing factor 45; RRM 99.6 1.3E-15 4.4E-20 117.3 11.8 81 96-176 6-93 (105)
176 3nmr_A Cugbp ELAV-like family 99.6 1E-15 3.5E-20 126.4 11.0 83 97-179 2-90 (175)
177 2voo_A Lupus LA protein; RNA-b 99.6 8.8E-16 3E-20 130.8 10.9 80 97-177 108-187 (193)
178 1fxl_A Paraneoplastic encephal 99.6 1.3E-15 4.5E-20 124.6 11.2 79 96-174 86-167 (167)
179 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-15 4.7E-20 135.9 11.9 83 94-178 5-91 (282)
180 3u1l_A PRE-mRNA-splicing facto 99.6 6.1E-16 2.1E-20 135.7 8.5 81 94-179 130-231 (240)
181 1fje_B Nucleolin RBD12, protei 99.6 9.3E-16 3.2E-20 127.1 8.9 78 96-177 97-174 (175)
182 2cjk_A Nuclear polyadenylated 99.6 8.2E-16 2.8E-20 126.2 8.0 79 97-177 2-81 (167)
183 2adc_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 132.2 9.3 80 95-178 31-111 (229)
184 3smz_A Protein raver-1, ribonu 99.6 4E-15 1.4E-19 133.0 11.6 86 94-179 180-266 (284)
185 2ghp_A U4/U6 snRNA-associated 99.6 3E-15 1E-19 134.4 10.4 83 95-178 207-292 (292)
186 2dit_A HIV TAT specific factor 99.6 9.9E-15 3.4E-19 113.3 11.7 80 96-178 13-103 (112)
187 3tyt_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 127.5 9.6 78 96-174 121-204 (205)
188 3pgw_A U1-A; protein-RNA compl 99.6 7.8E-15 2.7E-19 131.0 11.6 77 95-175 204-281 (282)
189 3smz_A Protein raver-1, ribonu 99.6 1.4E-14 4.9E-19 129.4 12.2 83 96-178 93-176 (284)
190 1fje_B Nucleolin RBD12, protei 99.6 1.5E-15 5.3E-20 125.8 4.8 84 94-178 9-92 (175)
191 1qm9_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 125.5 7.7 78 97-178 2-80 (198)
192 3sde_A Paraspeckle component 1 99.5 1.3E-14 4.5E-19 128.7 10.1 79 95-178 19-97 (261)
193 1qm9_A Polypyrimidine tract-bi 99.5 1.3E-14 4.3E-19 122.9 9.4 79 95-177 117-197 (198)
194 1jmt_A Splicing factor U2AF 35 99.5 4.2E-15 1.4E-19 114.2 5.4 72 103-174 20-103 (104)
195 3v4m_A Splicing factor U2AF 65 99.5 2.2E-14 7.6E-19 110.3 9.2 81 96-176 3-96 (105)
196 2adc_A Polypyrimidine tract-bi 99.5 2.5E-14 8.4E-19 124.5 10.6 79 95-177 148-228 (229)
197 2g4b_A Splicing factor U2AF 65 99.5 2.9E-14 1E-18 117.4 9.7 76 97-178 3-89 (172)
198 3sde_A Paraspeckle component 1 99.5 4E-14 1.4E-18 125.6 11.0 83 96-178 94-180 (261)
199 2ghp_A U4/U6 snRNA-associated 99.5 2.8E-14 9.6E-19 128.0 10.1 83 96-178 115-198 (292)
200 2yh0_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 119.1 9.5 76 97-178 3-89 (198)
201 3ue2_A Poly(U)-binding-splicin 99.5 1E-13 3.4E-18 108.9 9.6 80 97-176 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.2E-13 1.4E-17 102.2 12.1 76 98-179 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.5E-13 5.2E-18 126.5 9.3 77 94-175 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 2.6E-12 8.9E-17 100.2 10.4 79 96-177 5-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 3.3E-12 1.1E-16 100.2 9.2 84 91-179 11-98 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.8E-11 6.1E-16 90.6 8.3 75 96-178 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.8E-10 6E-15 85.8 6.7 72 96-175 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 2.1E-09 7.2E-14 92.6 10.7 84 93-176 119-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.3E-07 7.9E-12 70.5 9.4 74 95-173 18-96 (117)
210 1wey_A Calcipressin 1; structu 98.1 8.6E-06 3E-10 61.4 7.2 77 97-178 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 5.6E-05 1.9E-09 56.8 11.3 76 95-178 5-85 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00015 5.3E-09 53.5 9.2 67 99-165 2-71 (91)
213 1whv_A Poly(A)-specific ribonu 97.7 0.00015 5E-09 53.9 7.6 55 98-160 16-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.5 0.00036 1.2E-08 53.9 7.6 74 95-175 21-95 (119)
215 3ctr_A Poly(A)-specific ribonu 97.2 0.00047 1.6E-08 51.4 5.3 54 99-160 7-60 (101)
216 2l08_A Regulator of nonsense t 97.0 0.00089 3E-08 49.8 5.2 78 97-174 8-93 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.001 3.5E-08 63.1 3.7 56 98-158 53-108 (464)
218 2kn4_A Immunoglobulin G-bindin 96.2 0.0052 1.8E-07 49.1 5.0 35 127-162 2-36 (158)
219 3p3d_A Nucleoporin 53; structu 95.9 0.013 4.3E-07 45.9 5.7 78 97-176 6-98 (132)
220 2i2y_A Fusion protein consists 94.8 0.008 2.8E-07 47.7 1.3 39 137-176 11-50 (150)
221 3d45_A Poly(A)-specific ribonu 90.9 0.52 1.8E-05 45.1 7.6 55 98-160 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 88.7 0.81 2.8E-05 31.7 5.3 68 100-175 2-75 (76)
223 4eyt_A Telomerase associated p 87.4 3.4 0.00012 29.9 7.9 58 95-159 9-66 (129)
224 3fry_A Probable copper-exporti 74.8 9.4 0.00032 25.2 6.3 55 99-159 7-61 (73)
225 4e8u_A Putative uncharacterize 72.4 6.3 0.00021 32.0 5.5 55 100-156 14-80 (172)
226 4f25_A Polyadenylate-binding p 62.2 1.6 5.5E-05 32.4 0.0 19 96-114 95-113 (115)
227 3dxs_X Copper-transporting ATP 59.5 28 0.00095 22.6 6.1 56 99-159 4-63 (74)
228 1yg0_A COP associated protein; 52.1 38 0.0013 20.7 5.7 55 100-159 4-61 (66)
229 2cu1_A Mitogen-activated prote 49.3 54 0.0019 24.0 6.3 66 105-178 23-89 (103)
230 4a4j_A Pacszia, cation-transpo 48.2 23 0.00078 22.6 4.1 55 99-158 4-61 (69)
231 2xmw_A PACS-N, cation-transpor 47.7 48 0.0016 20.6 6.2 56 99-159 5-63 (71)
232 4bby_A Alkyldihydroxyacetoneph 46.1 13 0.00045 36.4 3.6 56 104-159 349-408 (658)
233 2kt2_A Mercuric reductase; nme 46.0 52 0.0018 20.5 6.1 54 100-158 3-59 (69)
234 1q8l_A Copper-transporting ATP 45.0 65 0.0022 21.3 7.5 57 98-159 10-70 (84)
235 1cpz_A Protein (COPZ); copper 43.6 55 0.0019 20.1 7.4 55 99-158 2-60 (68)
236 1kvi_A Copper-transporting ATP 43.5 63 0.0022 20.8 7.2 57 98-159 9-69 (79)
237 2l3m_A Copper-ION-binding prot 43.1 59 0.002 20.3 6.0 56 99-159 7-66 (71)
238 1osd_A MERP, hypothetical prot 41.5 63 0.0021 20.1 7.1 56 99-159 5-64 (72)
239 2ofg_X Zinc-transporting ATPas 41.1 93 0.0032 22.2 6.9 56 99-159 10-69 (111)
240 3cjk_B Copper-transporting ATP 39.3 72 0.0024 20.2 6.3 55 100-159 5-63 (75)
241 1b34_A Protein (small nuclear 38.8 8 0.00027 29.3 0.5 8 8-15 75-82 (119)
242 2w7a_A LINE-1 ORF1P; RNA-bindi 37.9 1E+02 0.0034 22.5 6.4 75 98-172 3-98 (100)
243 3lpe_A Putative transcription 37.6 83 0.0028 22.3 5.9 34 125-162 40-73 (92)
244 1aw0_A Menkes copper-transport 37.4 55 0.0019 20.4 4.7 56 99-159 5-64 (72)
245 1yjr_A Copper-transporting ATP 37.0 77 0.0026 19.9 7.1 56 98-158 5-64 (75)
246 3pgw_S U1-70K; protein-RNA com 34.4 3.3 0.00011 38.7 -2.8 14 115-128 9-22 (437)
247 1mwy_A ZNTA; open-faced beta-s 33.9 89 0.003 19.7 7.5 56 99-159 5-62 (73)
248 1fvq_A Copper-transporting ATP 33.7 77 0.0026 19.6 4.9 55 100-159 5-62 (72)
249 2g9o_A Copper-transporting ATP 33.3 57 0.0019 22.3 4.4 56 99-159 5-64 (90)
250 2kyz_A Heavy metal binding pro 32.5 45 0.0015 20.9 3.5 53 100-158 4-56 (67)
251 2okq_A Hypothetical protein YB 31.7 1.4E+02 0.0048 23.1 6.5 45 115-159 50-110 (141)
252 1y3j_A Copper-transporting ATP 31.5 60 0.0021 20.8 4.1 56 99-159 5-64 (77)
253 1opz_A Potential copper-transp 31.3 96 0.0033 19.3 7.5 56 99-159 8-67 (76)
254 3pm9_A Putative oxidoreductase 31.3 49 0.0017 31.0 4.8 54 107-160 195-252 (476)
255 2qif_A Copper chaperone COPZ; 31.1 88 0.003 18.8 6.2 55 100-159 5-63 (69)
256 1p6t_A Potential copper-transp 31.1 1.1E+02 0.0038 22.6 6.1 56 99-159 76-135 (151)
257 2ew9_A Copper-transporting ATP 30.2 89 0.0031 22.9 5.4 56 99-159 82-141 (149)
258 1wvf_A 4-cresol dehydrogenase 30.0 23 0.0008 33.5 2.3 45 114-158 217-263 (520)
259 3fut_A Dimethyladenosine trans 29.7 47 0.0016 28.6 4.1 30 98-128 110-139 (271)
260 3ts2_A Protein LIN-28 homolog 29.0 5.9 0.0002 31.3 -1.7 28 113-147 2-29 (148)
261 3u5e_X 60S ribosomal protein L 27.8 95 0.0033 24.2 5.1 56 99-158 81-138 (142)
262 4a17_R RPL23A, 60S ribosomal p 27.5 95 0.0033 24.4 5.0 56 99-158 89-146 (150)
263 3iwl_A Copper transport protei 26.8 1.2E+02 0.0042 19.1 5.4 53 99-158 4-57 (68)
264 2lfv_A Protein DAMX; cell divi 32.5 14 0.00047 27.4 0.0 64 98-166 25-91 (106)
265 2yko_A LINE-1 ORF1P; RNA-bindi 26.2 2.2E+02 0.0075 24.0 7.4 78 97-174 51-149 (233)
266 3bgu_A Ferredoxin-like protein 26.0 1.5E+02 0.0053 21.6 5.9 55 100-154 24-88 (116)
267 2ldi_A Zinc-transporting ATPas 25.6 1.2E+02 0.004 18.4 5.2 55 99-158 5-63 (71)
268 2i3t_B Spindle assembly checkp 25.4 32 0.0011 22.1 1.6 16 2-17 22-37 (54)
269 3uzu_A Ribosomal RNA small sub 24.8 27 0.00094 30.2 1.6 34 98-131 114-147 (279)
270 2crl_A Copper chaperone for su 24.8 98 0.0034 21.6 4.5 55 99-159 21-76 (98)
271 3h7h_B Transcription elongatio 24.6 1.3E+02 0.0044 22.0 5.1 36 124-163 40-75 (106)
272 2e7g_A Putative ribosome-bindi 24.3 99 0.0034 23.4 4.6 36 122-160 43-79 (129)
273 2qyc_A Ferredoxin-like protein 24.3 1.9E+02 0.0065 20.4 6.4 54 101-154 8-71 (103)
274 2pk2_A Cyclin-T1, protein TAT; 23.9 16 0.00056 33.0 0.0 7 7-13 99-105 (358)
275 1qyr_A KSGA, high level kasuga 22.9 53 0.0018 27.8 3.1 28 99-126 91-118 (252)
276 2uuu_A Alkyldihydroxyacetoneph 22.1 48 0.0016 32.0 2.9 54 107-160 282-339 (584)
277 3iz5_X 60S ribosomal protein L 21.8 89 0.0031 24.6 3.9 54 99-156 91-146 (152)
278 2kkh_A Putative heavy metal tr 21.4 1.9E+02 0.0066 19.4 8.3 56 99-159 18-77 (95)
279 1jww_A Potential copper-transp 21.2 1.4E+02 0.0048 18.8 4.5 56 99-159 5-64 (80)
280 3ftd_A Dimethyladenosine trans 21.2 58 0.002 27.4 3.0 30 99-128 96-125 (249)
281 2ns6_A Mobilization protein A; 20.8 1.5E+02 0.005 24.0 5.2 49 98-148 70-126 (185)
282 3ced_A Methionine import ATP-b 20.6 2.3E+02 0.0079 20.0 6.4 64 97-160 19-86 (98)
283 2k2p_A Uncharacterized protein 20.3 1.2E+02 0.004 20.5 4.0 57 98-159 23-80 (85)
284 3uly_B Charged multivesicular 20.3 65 0.0022 21.8 2.4 18 271-288 7-24 (69)
285 1vyi_A RNA polymerase alpha su 20.0 42 0.0014 24.3 1.5 16 4-19 44-59 (112)
No 1
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=242.24 Aligned_cols=154 Identities=45% Similarity=0.755 Sum_probs=121.4
Q ss_pred CCCcCCCChHHHHHhcccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCc
Q 022827 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNARPSSYTIAKSFRRTRNFPWQH 80 (291)
Q Consensus 1 m~~~ld~sLddii~~~~~~~~~~~~~~~~rg~gr~rg~~~~~~~~~g~g~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~ 80 (291)
|+++|||||||||+++++..+++ |++++++ ++.++...+..|++||..++ ..+..|+|
T Consensus 15 m~~~ld~sLDdii~~~r~~~r~~------r~~~~r~------------~~~~~~~~g~~r~~~y~~~~----~~~~~w~~ 72 (177)
T 2f3j_A 15 MADKMDMSLDDIIKLNRNQRRVN------RGGGPRR------------NRPAIARGGRNRPAPYSRPK----PLPDKWQH 72 (177)
T ss_dssp CCCSSSCCHHHHHHHHHTCCSCS------SSCCSSS------------SSCCCTTTSSTTTCCSSSCC----CCTTCSSC
T ss_pred hhhhhccCHHHHHhhcccCCCCC------CCCCCCC------------CCCCCCCCCcCCCCCCCCCc----Cccccccc
Confidence 89999999999999886643211 1110000 01111112245666776543 45889999
Q ss_pred hhhhhhhhhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 81 DLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
+.|++.. .......+.++|||.|||+++++++|+++|++||+|+.|.|+.++++.+++||||+|.+.++|++||+.||
T Consensus 73 d~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 73 DLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp SSSCSSC--CCCSSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred ccccccc--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 9998765 23345677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCCeeeEEEEecCCC
Q 022827 161 NVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 161 g~~l~g~~i~V~~a~~~~ 178 (291)
+..|++++|+|+++....
T Consensus 151 g~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 151 GVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp TCBCSSSBCEEEEESSGG
T ss_pred CCEECCEEEEEEEecCCC
Confidence 999999999999998654
No 2
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=1.9e-22 Score=155.44 Aligned_cols=101 Identities=50% Similarity=0.886 Sum_probs=79.8
Q ss_pred CCCCCCCchhhhhhhhhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHH
Q 022827 73 TRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152 (291)
Q Consensus 73 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A 152 (291)
..+..|+|++|.... ..++...+.++|||.|||+.+|+++|+++|++||.|..|.|+.++++.+++||||+|.+.++|
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 6 QLPDKWQHDLFDSGF--GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 83 (107)
T ss_dssp --------------------CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred CCCcccccccccCCC--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHH
Confidence 457789999987665 234566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEEEec
Q 022827 153 FAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 153 ~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
++||+.||+..|.++.|+|+++.
T Consensus 84 ~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 84 LKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhCCCEeCCcEEEEEEeC
Confidence 99999999999999999999986
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=152.13 Aligned_cols=81 Identities=33% Similarity=0.452 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|++|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cC
Q 022827 175 GT 176 (291)
Q Consensus 175 ~~ 176 (291)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 4
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.87 E-value=5.6e-23 Score=180.08 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G--~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..++|||+||+++||+++|+++|++|| .|++|.|+.++ +++++|||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+....
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87543
No 5
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=2.4e-21 Score=159.37 Aligned_cols=85 Identities=29% Similarity=0.378 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++|+++|+++|++||+|+.|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34578999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997643
No 6
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=5.1e-21 Score=151.48 Aligned_cols=104 Identities=47% Similarity=0.854 Sum_probs=93.2
Q ss_pred CCCCCCchhhhhhhhhcCCCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHH
Q 022827 74 RNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAF 153 (291)
Q Consensus 74 ~~~~~~~d~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~ 153 (291)
.+..|+++.+.... ...+...+.++|||+|||+.+++++|+++|++||+|..|.|+.++++.+++||||+|.+.++|+
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~ 90 (124)
T 2kt5_A 13 DPDKWQHDLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADAL 90 (124)
T ss_dssp CCCCCCCCCCCCCC--CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHH
T ss_pred CCccccccccccCC--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 46689998877654 2334567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeeeEEEEecCCCC
Q 022827 154 AALKRYNNVLLDGKPMKIEVVGTNAE 179 (291)
Q Consensus 154 ~Ai~~lng~~l~g~~i~V~~a~~~~~ 179 (291)
+||+.||+..|+|+.|+|+++.....
T Consensus 91 ~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 91 KAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 99999999999999999999987654
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=148.93 Aligned_cols=83 Identities=13% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||+|||+++++++|+++|++||+|.+|.|+.|+ +++++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=139.54 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCC
Q 022827 175 GTN 177 (291)
Q Consensus 175 ~~~ 177 (291)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=140.50 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467999999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7665
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=141.23 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++|+++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987753
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=140.83 Aligned_cols=86 Identities=16% Similarity=0.310 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
+...+.++|||.|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+ ||+..|+++.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999998 89999999999999999999998 9999999999999
Q ss_pred EEecCCCC
Q 022827 172 EVVGTNAE 179 (291)
Q Consensus 172 ~~a~~~~~ 179 (291)
+++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987653
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-21 Score=143.72 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhC-CceeCCeeeEEEEe
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN-NVLLDGKPMKIEVV 174 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G-~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln-g~~l~g~~i~V~~a 174 (291)
+++|||.|||+++||++|+++|++|| +|.+|.|+.++ ++.++|||||+|.+.++|++||+.++ +..|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999998 89999999999999999999999875 56899999999999
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8765
No 13
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=141.89 Aligned_cols=86 Identities=21% Similarity=0.372 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
....+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344578999999999999999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++.+..
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9998765
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=143.91 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
+...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998664
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=2.9e-20 Score=145.09 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
++.++|||.|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87653
No 16
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=140.65 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.++|||.|||+++|+++|+++|++||+|..|.|+.++++.+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=141.87 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3567999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88765
No 18
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=145.05 Aligned_cols=87 Identities=29% Similarity=0.486 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
+....+.++|||+|||+.+++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455678999999999999999999999999999999999997 889999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|+++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987654
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=141.89 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4577999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022827 174 VGTNAE 179 (291)
Q Consensus 174 a~~~~~ 179 (291)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=8e-20 Score=142.51 Aligned_cols=86 Identities=20% Similarity=0.366 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||.|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 022827 174 VGTNAEI 180 (291)
Q Consensus 174 a~~~~~~ 180 (291)
+.+....
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877643
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=141.90 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34577999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 988665
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=6.9e-20 Score=140.49 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC---eeeEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG---KPMKIE 172 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g---~~i~V~ 172 (291)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987763
No 23
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=6.2e-20 Score=134.55 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
+++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|++|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 899999999999999999999999999999999999999886
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 24
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=8.3e-20 Score=143.21 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||+|||+++|+++|+++|++||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..|+++.|+|+++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 665
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.5e-20 Score=136.50 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3577999999999999999999999999999999999986 889999999999999999999999999999999999998
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 26
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=140.86 Aligned_cols=84 Identities=27% Similarity=0.446 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.++|||.|||+++++++|+++|++||.|.+|.|+.++++.+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7554
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=142.82 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCc----eeCC
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE--LKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDG 166 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~--v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~----~l~g 166 (291)
....-.||||.|||+++|+++|+++|++||. |.+|.|+.|+ ++.++|||||+|.+.++|++||+.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3455689999999999999999999999995 6789999998 8999999999999999999999999986 5999
Q ss_pred eeeEEEEecC
Q 022827 167 KPMKIEVVGT 176 (291)
Q Consensus 167 ~~i~V~~a~~ 176 (291)
++|.|++|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=138.72 Aligned_cols=82 Identities=29% Similarity=0.376 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.++.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred ecC
Q 022827 174 VGT 176 (291)
Q Consensus 174 a~~ 176 (291)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 764
No 29
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=138.87 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.++.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4567899999999999999999999999999999999998 789999999999999999999999999999999999998
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.8e-20 Score=141.62 Aligned_cols=86 Identities=28% Similarity=0.432 Sum_probs=80.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
....+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 334567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987664
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=141.93 Aligned_cols=86 Identities=20% Similarity=0.382 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhC------CceeCC
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN------NVLLDG 166 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln------g~~l~g 166 (291)
...+.++|||.|||+++|+++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.|| +..|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44577899999999999999999999999999999999998 89999999999999999999999999 999999
Q ss_pred eeeEEEEecCCCC
Q 022827 167 KPMKIEVVGTNAE 179 (291)
Q Consensus 167 ~~i~V~~a~~~~~ 179 (291)
+.|+|+++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999887653
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=138.97 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||.|||+.+++++|+++|++||+|..|.|+.++++.+++||||+|.+.++|++||+.||+..|++++|+|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999998
Q ss_pred ecC
Q 022827 174 VGT 176 (291)
Q Consensus 174 a~~ 176 (291)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 33
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=6.7e-20 Score=137.11 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
++..+.++|||.|||+++++++|+++|++||+|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999985 78889999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987664
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=139.07 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v-~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.+.++|||.|||+++++++|+++|++||.|..| .|+.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 999996 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 88665
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=138.32 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||.|||+++|+++|+++|++||.|..|.|+.++.. +++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999998754 899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022827 174 VGTNAE 179 (291)
Q Consensus 174 a~~~~~ 179 (291)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 987764
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=3.8e-20 Score=146.64 Aligned_cols=87 Identities=28% Similarity=0.417 Sum_probs=81.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
+....+.++|||.|||+++|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455678899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|+++.+..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99998665
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=7.8e-20 Score=138.11 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
++++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q 022827 176 TNAE 179 (291)
Q Consensus 176 ~~~~ 179 (291)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7753
No 38
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=138.93 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=78.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCc
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV 162 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~--------v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (291)
+++..+.++|||+|||+++++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345567899999999999999999999999999999 9999997 8999999999999999999999999999
Q ss_pred eeCCeeeEEEEec
Q 022827 163 LLDGKPMKIEVVG 175 (291)
Q Consensus 163 ~l~g~~i~V~~a~ 175 (291)
.|.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 39
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=141.32 Aligned_cols=84 Identities=25% Similarity=0.362 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++|+++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+ .|+++.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34567999999999999999999999999999999999998 899999999999999999999999998 8999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 987654
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=6.2e-20 Score=143.60 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++. .++|||||+|.+.++|++||+.||+..|+|+.|+|+++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999999999863 4799999999999999999999999999999999999876
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.1e-20 Score=141.22 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G--~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+|||+|||+++|+++|+++|++|| .|.+|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998 99999999999999999999999999999999999999988
Q ss_pred CCCC
Q 022827 176 TNAE 179 (291)
Q Consensus 176 ~~~~ 179 (291)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=140.09 Aligned_cols=85 Identities=26% Similarity=0.362 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-C-CCCCceEEEEEEcCHHHHHHHHHHh-CCceeCCeeeE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-K-NGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMK 170 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d-~-tg~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~g~~i~ 170 (291)
...+.++|||.|||+.+++++|+++|++||+|..|.|+.+ + ++.+++||||+|.+.++|++||+.| |+..|.++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4457799999999999999999999999999999999999 5 8999999999999999999999999 99999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|+++.++.
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998765
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=7.7e-20 Score=140.44 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCcee---CCeee
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKPM 169 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l---~g~~i 169 (291)
...+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34577899999999999999999999999999999999998 799999999999999999999999999987 89999
Q ss_pred EEEEecCCC
Q 022827 170 KIEVVGTNA 178 (291)
Q Consensus 170 ~V~~a~~~~ 178 (291)
+|+++.+..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999988665
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=139.45 Aligned_cols=84 Identities=24% Similarity=0.443 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.++|||.|||+++|+++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 347789999999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=138.04 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee---
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP--- 168 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~-~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~--- 168 (291)
...+.++|||+|||+++++++|+++|++||+|. .|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 99999998 8999999999999999999999999999999999
Q ss_pred -eEEEEecCCC
Q 022827 169 -MKIEVVGTNA 178 (291)
Q Consensus 169 -i~V~~a~~~~ 178 (291)
|+|+++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987553
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=8.8e-20 Score=141.17 Aligned_cols=87 Identities=25% Similarity=0.412 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
+....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445677899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|+++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987654
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.6e-19 Score=138.09 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+..+.++|||.|||+++++++|+++|++|+ |..|.|+.++ ++.++|||||+|.+.++|++|| .||+..|.++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345679999999999999999999999996 9999999998 8999999999999999999999 999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 988665
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=139.04 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-C-CCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-t-g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
..+.++|||.|||+++++++|+++|++|| |..|.|+.++ + +.+++||||+|.+.++|++|| .||+..|+++.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35679999999999999999999999999 9999999998 5 899999999999999999999 999999999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.+...
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 49
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=136.19 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
+....++|||+|||+++++++|+ ++|++||+|.+|.|+.++.. ++||||+|.+.++|++||+.||+..|+|+.|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999999999999 99999999999999998844 8899999999999999999999999999999
Q ss_pred EEEEecCCC
Q 022827 170 KIEVVGTNA 178 (291)
Q Consensus 170 ~V~~a~~~~ 178 (291)
+|+++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997665
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=136.36 Aligned_cols=84 Identities=30% Similarity=0.289 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||.|||+++++++|+++|++||.|..|.|+.++.. +++||||+|.+.++|++||+.||+..|.++.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3457799999999999999999999999999999999998643 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 88754
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=140.98 Aligned_cols=84 Identities=29% Similarity=0.491 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~--------~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
..+.++|||.|||+++|+++|+++|++||.|. .|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999999 69999996 8999999999999999999999999999999
Q ss_pred CeeeEEEEecCCC
Q 022827 166 GKPMKIEVVGTNA 178 (291)
Q Consensus 166 g~~i~V~~a~~~~ 178 (291)
++.|+|+++.+..
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999988765
No 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=145.06 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.....++|||+|||+++++++|+++|+.||+|++|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 988765
No 53
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=133.60 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.....++|||.|||+++++++|+++|+.| .|..|.|+.+.++.++|||||+|.+.++|++||+ ||+..|.++.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 9999999999999999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+.+
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=136.93 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--C--CCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN--G--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~t--g--~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
.+.++|||.|||+++++++|+++|++||+|..|.|+.++. + .+++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998763 3 78999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987665
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=139.06 Aligned_cols=85 Identities=21% Similarity=0.333 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCce-eCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL-LDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~-~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~-l~g~~i~V 171 (291)
...+.++|||+|||+++|+++|+++|++ ||.|..|.|+.++++.+++||||+|.+.++|++||+.||+.. |+++.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3457799999999999999999999999 999999999999999999999999999999999999999999 99999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++.+..
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987664
No 56
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=139.90 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~g~~i~V~ 172 (291)
..+.++|||+|||+++||++|+++|++||.|++|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|++|+|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 357899999999999999999999999999999999976 79999999999999999998864 78999999999
Q ss_pred EecCCCCC
Q 022827 173 VVGTNAEI 180 (291)
Q Consensus 173 ~a~~~~~~ 180 (291)
+++++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 57
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=139.31 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+. |+..|+++.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 34577999999999999999999999999999999999997 899999999999999999999988 9999999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9886653
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.8e-20 Score=137.90 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
.+..++|||.|||+++++++|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3466899999999999999999999999999988787776 899999999999999999999999999999999999999
Q ss_pred ecCC
Q 022827 174 VGTN 177 (291)
Q Consensus 174 a~~~ 177 (291)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 59
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=137.12 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC-----e
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-----K 167 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g-----~ 167 (291)
++....++|||.|||+++|+++|+++|++||+|+.|.|+.+ +||||+|.+.++|++||+.||+..|++ +
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 34456799999999999999999999999999999999876 799999999999999999999999999 9
Q ss_pred eeEEEEecCCC
Q 022827 168 PMKIEVVGTNA 178 (291)
Q Consensus 168 ~i~V~~a~~~~ 178 (291)
.|+|+++.++.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999988754
No 60
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=4e-19 Score=169.38 Aligned_cols=84 Identities=24% Similarity=0.431 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||+|||+.||+++|+++|++||.|+.|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86653
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=133.20 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCC-CceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~-~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..++|||+|||+++|+++|+++|++||.|..|.|+.++ ++. +++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 56899999999999999999999999999999999887 444 8999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7553
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.2e-19 Score=145.15 Aligned_cols=85 Identities=29% Similarity=0.377 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
..++.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987654
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4.6e-20 Score=140.81 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCC-ee
Q 022827 97 VGTKLYVSNLHP------GVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KP 168 (291)
Q Consensus 97 ~~~~l~V~nL~~------~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g-~~ 168 (291)
.+++|||.|||+ ++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+.||+..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999 79999999999999999999999999999999 99
Q ss_pred eEEEEecCC
Q 022827 169 MKIEVVGTN 177 (291)
Q Consensus 169 i~V~~a~~~ 177 (291)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998653
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=7.5e-20 Score=137.63 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
++.++|||.|||+++|+++|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 456899999999999999999999999999988888877 8899999999999999999999999999999999999987
Q ss_pred c
Q 022827 175 G 175 (291)
Q Consensus 175 ~ 175 (291)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.5e-19 Score=141.60 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999999999999998
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.8e-19 Score=132.03 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|| .||+..|+++.|+|+++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4799999999999999999999999999999999998 8999999999999999999999 9999999999999999875
Q ss_pred C
Q 022827 177 N 177 (291)
Q Consensus 177 ~ 177 (291)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 67
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=4.4e-19 Score=131.34 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999998 89999999999999999999995 58889999999998
Q ss_pred Ee
Q 022827 173 VV 174 (291)
Q Consensus 173 ~a 174 (291)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8e-19 Score=134.11 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+ +++.|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999997 4789999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987754
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=136.54 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.++|||.|||+++|+++|+++|++||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 346789999999999999999999999999999998654 457899999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7654
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.3e-20 Score=139.42 Aligned_cols=84 Identities=19% Similarity=0.512 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87653
No 71
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.7e-19 Score=146.69 Aligned_cols=86 Identities=26% Similarity=0.427 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
....+.++|||.|||+.+|+++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.++.+..
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9988765
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.3e-18 Score=133.08 Aligned_cols=81 Identities=26% Similarity=0.363 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
+....+.++|||.|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 3445678999999999999999999999999999999987 559999999999999999999999999999999
Q ss_pred EEecCCCC
Q 022827 172 EVVGTNAE 179 (291)
Q Consensus 172 ~~a~~~~~ 179 (291)
+++.+...
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99987664
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=137.51 Aligned_cols=82 Identities=24% Similarity=0.360 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
....++|||.|||+++|++||+++|+.||. +.|.|+.+++++++|||||+|.+.++|++|| .+|+..|+++.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 346689999999999999999999999995 4999999999999999999999999999999 57999999999999987
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=137.47 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||+|||+++|+++|+++|++||+|.+|.|+.++.+.++|||||+|.+.++|++||+ +|+..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 35689999999999999999999999999999999999889999999999999999999997 89999999999999876
Q ss_pred C
Q 022827 176 T 176 (291)
Q Consensus 176 ~ 176 (291)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 75
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=135.05 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCce--eCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL--LDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~--l~g~~i~V 171 (291)
..+++++|||+|||+++|+++|+++|++||.|.+|.|+.. ++||||+|.+.++|++||+.||+.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3457899999999999999999999999999999999854 7999999999999999999998764 88999999
Q ss_pred EEecCC
Q 022827 172 EVVGTN 177 (291)
Q Consensus 172 ~~a~~~ 177 (291)
++++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998765
No 76
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=145.67 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G--~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..++|||+|||+++|+++|+++|+.|| .|..|.|+.|+ ++.++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecCC
Q 022827 174 VGTN 177 (291)
Q Consensus 174 a~~~ 177 (291)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 77
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=130.55 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
++..+.++|||+|||+++|+++|+++|++||+|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345678999999999999999999999999999999998 6799999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 988765
No 78
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.6e-19 Score=131.32 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+..|||+||++.+||++|+++|.+||+|+++.|.. ++|||||+|.++++|++||+.||+++|.+++|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 568999999999999999999999999999999976 49999999999999999999999999999999999984
No 79
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=136.08 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~-v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....++|||.|||+++|+++|+++|+.||.|.. |.|+.+.+++++|||||+|.++++|++||+. |+..|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346789999999999999999999999999997 8888888999999999999999999999987 99999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87543
No 80
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-20 Score=134.72 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 577999999999999999999999999999999999997 8999999999999999999999999999999999887654
No 81
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=6.2e-19 Score=136.65 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||+|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999998764 999999999999
Q ss_pred ecCCCC
Q 022827 174 VGTNAE 179 (291)
Q Consensus 174 a~~~~~ 179 (291)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=135.52 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCC-CCCCceEEEEEEcCHHHHHHHHHHhC--CceeCCeeeE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIH-FDK-NGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMK 170 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~-v~~v~i~-~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln--g~~l~g~~i~ 170 (291)
.+.++|||+|||+++|+++|+++|++||. |..|.|+ .++ ++.+++||||+|.+.++|++||+.|| +..|+++.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 666 78999999999999999999999996 5899999999
Q ss_pred EEEecCCCC
Q 022827 171 IEVVGTNAE 179 (291)
Q Consensus 171 V~~a~~~~~ 179 (291)
|+++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987664
No 83
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-19 Score=132.29 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC--CeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~--g~~i~V~ 172 (291)
..+.++|||.|||+++|+++|+++|++||+|..|.|+.+ ++||||+|.+.++|++||+.||+..|+ ++.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 346789999999999999999999999999999999865 789999999999999999999999999 9999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+++
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4.4e-19 Score=139.47 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
....++|||+|||+++|+++|+++|+.||. |..|.|+.+++++++|||||+|.+.++|++||+ +|+..|+++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346789999999999999999999999999 899999999999999999999999999999998 9999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=136.20 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
......++|||+|||+++++++|+++|++||.|..|.|+.++. .+++||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445778999999999999999999999999999999998864 489999999999999999999999999999999999
Q ss_pred EecCC
Q 022827 173 VVGTN 177 (291)
Q Consensus 173 ~a~~~ 177 (291)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98765
No 86
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.2e-18 Score=143.20 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....++|||+|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.+++|+|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98764
No 87
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=133.07 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh--CCceeCCeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~g~~i~V~ 172 (291)
.+++++|||+|||+++|+++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.| ++..|.|++|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 357789999999999999999999999999999998866 899999999999999999987 4678999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987653
No 88
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=134.39 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~g~~i~V~ 172 (291)
..++++|||.|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++ ..|.|++|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457799999999999999999999999999999998865 79999999999999999998865 45999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998665
No 89
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=129.22 Aligned_cols=79 Identities=30% Similarity=0.415 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+...+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345677999999999999999999999999999999998 4499999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998664
No 90
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=136.26 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022827 96 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (291)
Q Consensus 96 ~~~~~l~V~nL~~-~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~g~~i~V~ 172 (291)
+++++|||+|||+ ++|++||+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.||+ ..|.|++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4789999999999 9999999999999999999999876 68999999999999999999885 46999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998654
No 91
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=133.01 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||.|||+++|+++|+++|++||.| .|+.+.++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34567999999999999999999999999977 566667889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 88664
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=138.13 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v-~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||.|||+++|+++|+++|+.||.| ..|.|+.+++++++|||||+|.+.++|++||+. |+..|+++.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 467899999999999999999999999999 899999999999999999999999999999976 999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 93
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=137.64 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC--ceeCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~g~~i~V 171 (291)
..+++++|||+|||+++||++|+++|++||.|++|.|+.+ ++||||+|.+.++|++||+.|++ ..|.|++|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3457899999999999999999999999999999999976 79999999999999999999874 6899999999
Q ss_pred EEecCCCC
Q 022827 172 EVVGTNAE 179 (291)
Q Consensus 172 ~~a~~~~~ 179 (291)
++++.+..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99987653
No 94
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.4e-19 Score=144.35 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||+|||+++|+++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98664
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=137.29 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCC-CC---CCceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIR---ELFSEIGELKRYAIHFDK-NG---RPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~---~~F~~~G~v~~v~i~~d~-tg---~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~ 167 (291)
....++|||.|||+++++++|+ ++|++||+|..|.|+.++ ++ .++|||||+|.+.++|++||+.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999 999999999999999887 33 5669999999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 022827 168 PMKIEVVGTNA 178 (291)
Q Consensus 168 ~i~V~~a~~~~ 178 (291)
+|+|+++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 96
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=136.39 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+.++|||.|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. |+..|+++.|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45899999999999999999999999999999999997 899999999999999999999987 9999999999999988
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 765
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=135.13 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee--------CCe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--------DGK 167 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l--------~g~ 167 (291)
.+.++|||.|||+++|+++|+++|+.||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 466899999999999999999999999999999999999999999999999999999999999999999 577
Q ss_pred eeEEEEecCC
Q 022827 168 PMKIEVVGTN 177 (291)
Q Consensus 168 ~i~V~~a~~~ 177 (291)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998743
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.3e-19 Score=137.26 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||.|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|| .||+..|+++.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45899999999999999999999999999999999998 7999999999999999999999 999999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4e-19 Score=127.88 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=70.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
+|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++ +|+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 89999999999999999999996 9999999999999874
No 100
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=142.56 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGK 167 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~--v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~----~l~g~ 167 (291)
..+.++|||+|||+++|+++|+++|++||.|.. |.|+.|+ +++++|||||+|.+. +|++||+.||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 9999999 999999999999999 999999999999 99999
Q ss_pred eeEEEEecCCC
Q 022827 168 PMKIEVVGTNA 178 (291)
Q Consensus 168 ~i~V~~a~~~~ 178 (291)
.|+|+++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=138.15 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~ 168 (291)
+..++.++|||+|||+.+++++|+ ++|++||+|.+|.|. .++.++|||||+|.+.++|++||+.||+..|.|++
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 445678999999999999999876 699999999988774 46788999999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 022827 169 MKIEVVGTNA 178 (291)
Q Consensus 169 i~V~~a~~~~ 178 (291)
|+|+++..+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998765
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1e-18 Score=136.09 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....++|||+|||+++++++|+++|++|| +|..|.|..+ .++|||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44678999999999999999999999999 8999988643 4789999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+...+
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87543
No 103
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=136.53 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..++|||.|||+++|++||+++|+.| .|..|.|+.+++++++|||||+|.+.++|++|| .+|+..|.++.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 899999999999999999999999999999999 7999999999999988764
Q ss_pred C
Q 022827 177 N 177 (291)
Q Consensus 177 ~ 177 (291)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 104
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=6.5e-19 Score=142.07 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||+ ||+..|+++.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 346789999999999999999999999999 889999999999999999999999999999998 9999999999999
Q ss_pred EEecCC
Q 022827 172 EVVGTN 177 (291)
Q Consensus 172 ~~a~~~ 177 (291)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 987643
No 105
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=139.33 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||+|||+.+++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999997 899999999999999999999999999999999999997
Q ss_pred e
Q 022827 174 V 174 (291)
Q Consensus 174 a 174 (291)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 106
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=135.91 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~--tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
......++|||+|||+++++++|+++|++|| |.+|.|+.++ +++++|||||+|.+.++|++|| .||+..|+|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3446779999999999999999999999999 9999999987 7999999999999999999999 9999999999999
Q ss_pred EEEecCCC
Q 022827 171 IEVVGTNA 178 (291)
Q Consensus 171 V~~a~~~~ 178 (291)
|+++.+..
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99987653
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.4e-18 Score=137.20 Aligned_cols=81 Identities=31% Similarity=0.492 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||+|||+++|+++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++|| .||+..|+|+.|+|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999999997 8999999999999999999999 899999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 108
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2.2e-19 Score=133.79 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~ 177 (291)
++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.+ |++|++.||+..|+|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7999999999999999 99999999999999999999999876
Q ss_pred CC
Q 022827 178 AE 179 (291)
Q Consensus 178 ~~ 179 (291)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-19 Score=128.83 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++.++ ..|+|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998 89999999999999999999999999 9999999999986
No 110
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=127.27 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh-CCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~g~~i~V 171 (291)
+...+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.| |+..|+|++|+|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 44567789999999999999999999999999999999975 799999999999999999989 999999999999
Q ss_pred EEec
Q 022827 172 EVVG 175 (291)
Q Consensus 172 ~~a~ 175 (291)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 111
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=127.86 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34577899999999999999999999999999999998 34999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88664
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-19 Score=138.17 Aligned_cols=85 Identities=33% Similarity=0.426 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..+.++|||.|||+++|+++|+++|++||.|..|.+..+. ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567999999999999999999999999999533222222 788899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022827 174 VGTNAE 179 (291)
Q Consensus 174 a~~~~~ 179 (291)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987653
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=7.4e-19 Score=135.19 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 022827 94 GIEVGTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~------te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~ 167 (291)
.....++|||+|||+.+ |+++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||+.||+..|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34457899999999999 789999999999999999988 45889999999999999999999999999999998
Q ss_pred -eeEEEEecCC
Q 022827 168 -PMKIEVVGTN 177 (291)
Q Consensus 168 -~i~V~~a~~~ 177 (291)
+|+|+++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 114
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=6.3e-19 Score=140.26 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=74.5
Q ss_pred CCCCchhhhhhhhhc-----CCCCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCCCCCceEEEEEEcC
Q 022827 76 FPWQHDLFEDSLRAA-----GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--RYAIHFDKNGRPSGSAEVVYAR 148 (291)
Q Consensus 76 ~~~~~d~~~~~~~~~-----~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~--~v~i~~d~tg~~kG~afV~F~~ 148 (291)
..|+++++....... ........++|||+|||+++|+++|+++|+.| .|+ .|.|+.+++++++|||||+|.+
T Consensus 15 ~~~~~~~~s~~g~~~~~~g~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~ 93 (126)
T 2hgm_A 15 VPRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFAS 93 (126)
T ss_dssp --------------------CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESS
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECC
Confidence 457777665443211 12334567899999999999999999999999 677 8999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 149 RSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 149 ~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
.++|++||+. ++..|+++.|.|.++..
T Consensus 94 ~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 94 QELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp TTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred HHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 9999999975 77999999999998754
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=131.13 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.++|||.|||+.+|+++|+++|++||+|..|.|+.+ ++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 356789999999999999999999999999999999865 799999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8765
No 116
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=130.96 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+++|+++|+++|+.| ..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34577999999999999999999999977 367788887 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998664
No 117
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=132.07 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|+|+.|+|+++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 46789999999999999999999999999999999977 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 022827 176 TNAE 179 (291)
Q Consensus 176 ~~~~ 179 (291)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-19 Score=140.51 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee-CCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHF-DKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~-d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||.|||+++|+++|+++|+.||.|..+.++. +.+++++|||||+|.+.++|++||+ ||+..|+++.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4668999999999999999999999999998844444 4499999999999999999999998 9999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
..+.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=129.58 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+..++|||+|||+++|+++|+++|++||.|. +.|+.+ .+++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34678999999999999999999999999997 666654 57899999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=129.25 Aligned_cols=79 Identities=34% Similarity=0.454 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC-ceeCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~-v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-~~l~g~~i~V 171 (291)
...+.++|||+|||+++|+++|+++|++||. |..+.|. +++||||+|.+.++|++||+.||+ ..|+++.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 3457789999999999999999999999999 6655553 378999999999999999999999 9999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998765
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.3e-18 Score=131.33 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
..++.++|||+|||+++++++|+ ++|++||.|..|.|+. ++.+++||||+|.+.++|++|++.||+..|.|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 34678999999999999999999 9999999999998873 46678999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 022827 170 KIEVVGTNAE 179 (291)
Q Consensus 170 ~V~~a~~~~~ 179 (291)
+|+++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987653
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=127.27 Aligned_cols=78 Identities=28% Similarity=0.419 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~--G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
...+.++|||.|||+++|+++|+++|++| |.|..|.+. ++||||+|.+.++|++||+.||+..|+++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34577999999999999999999999999 999988876 679999999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9988664
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=4e-19 Score=135.35 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||+|||+++|+++|+++|++||.|.. .++.+. ++.++|||||+|.+.++|++||+ ||+..|.++.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999987 555565 78999999999999999999998 9999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8665
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=130.86 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
++|||+|||+++|+++|+++|++||+|..|.|+.+ +++||||+|.+.++|++||+.||+..|+++.|+|+++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999877 68999999999999999999999999999999999998765
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=9.5e-18 Score=127.19 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
...++.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999998 99999999999999999999884 789999999999999999999999999999999
Q ss_pred EEecCC
Q 022827 172 EVVGTN 177 (291)
Q Consensus 172 ~~a~~~ 177 (291)
+++...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998765
No 126
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.7e-18 Score=134.32 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee-----e
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-----M 169 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~-----i 169 (291)
....++|||.|||+++|+++|+++|++||+|+.|.|+.+ +||||+|.+.++|++||+.||+.+|+|+. |
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 356789999999999999999999999999999999865 89999999999999999999999999998 5
Q ss_pred EEEEec
Q 022827 170 KIEVVG 175 (291)
Q Consensus 170 ~V~~a~ 175 (291)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555444
No 127
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=134.88 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||+ +|+..|.++.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3457789999999999999999999999998 899999999899999999999999999999998 999999999999
Q ss_pred EEEecCC
Q 022827 171 IEVVGTN 177 (291)
Q Consensus 171 V~~a~~~ 177 (291)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.5e-18 Score=130.10 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||+|||+++++++|+++|++||.|.+|.|.. +++||||+|.+.++|++||+.||+..|+|+.|+|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4678999999999999999999999999999999983 48999999999999999999999999999999999886
Q ss_pred C
Q 022827 176 T 176 (291)
Q Consensus 176 ~ 176 (291)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=126.83 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe-eeE
Q 022827 98 GTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 170 (291)
Q Consensus 98 ~~~l~V~nL~~~~------te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~-~i~ 170 (291)
+++|||+|||+.+ ++++|+++|++||+|.+|.|+ ..++.++|||||+|.+.++|++||+.||+..|+|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 4799999999999 779999999999999999887 44889999999999999999999999999999999 887
Q ss_pred E
Q 022827 171 I 171 (291)
Q Consensus 171 V 171 (291)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.6e-18 Score=128.46 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
..++.++|||+|||+ .+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345789999999999 99999999999999999999985 7899999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.+..
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998664
No 131
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.7e-18 Score=130.64 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34577999999999999999999999999999999998 78999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 88765
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=133.26 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC--CceeCCeeeEE
Q 022827 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKI 171 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln--g~~l~g~~i~V 171 (291)
..++++|||+|||++ +|+++|+++|++||.|.+|.|+.. ++||||+|.+.++|++||+.|| ...|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346899999999998 999999999999999999999854 8999999999999999999886 46699999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
+++....
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9997654
No 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=136.40 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL----KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v----~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
...++|||.|||+++|++||+++|++||.| ..|.|+.+++++++|||||+|.+.++|++||+. |+..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 357899999999999999999999999986 689999999999999999999999999999976 999999999999
Q ss_pred EEecCC
Q 022827 172 EVVGTN 177 (291)
Q Consensus 172 ~~a~~~ 177 (291)
..+...
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 134
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=131.73 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..++|||.|||+++++++|+++|++||.|..|.|+.. ++||||+|.+.++|++||+.||+..|++++|+|+|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4689999999999999999999999999999988753 78999999999999999999999999999999999987
Q ss_pred CCC
Q 022827 177 NAE 179 (291)
Q Consensus 177 ~~~ 179 (291)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 653
No 135
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=7.3e-19 Score=142.29 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||.|||+++|++||+++|++|| |+.|.|+++++++++|||||+|.+.++|++|| .+|+..|+++.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999999999999999999999999999999 889999999999999876
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 136
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=137.21 Aligned_cols=87 Identities=28% Similarity=0.372 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEE------EEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY------AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v------~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
.+..+.++|||+|||+.+|+++|+++|++||.|..| .|....++.++|||||+|.+.++|++||+.||+..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 445678999999999999999999999999999874 23333478899999999999999999999999999999
Q ss_pred eeeEEEEecCCCC
Q 022827 167 KPMKIEVVGTNAE 179 (291)
Q Consensus 167 ~~i~V~~a~~~~~ 179 (291)
+.|+|+++.+...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976543
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.5e-18 Score=124.78 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=70.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
+|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+. ++..|+|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998 899999999999999999999974 889999999999875
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.1e-17 Score=144.10 Aligned_cols=85 Identities=31% Similarity=0.370 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
+..+.++|||+|||+++||++|+++|++||+|.+|.|+.|+ +++++|||||+|.+.++|++||+.+|+..+.++.|+|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 887554
No 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=1e-17 Score=130.52 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.++.++|||+|||+.+|+++|+++|+.||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 356789999999999999999999999999999999876 445899999999999999999999999999999999998
Q ss_pred cCC
Q 022827 175 GTN 177 (291)
Q Consensus 175 ~~~ 177 (291)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 754
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=128.60 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999988765 34778899999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+.+..
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87664
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=3.3e-18 Score=130.41 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
....++|||+|||+++++++|+++|++||.|..|.|+.++++.++|||||+|.+.++|++||+ ++..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
....
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.5e-17 Score=128.61 Aligned_cols=76 Identities=25% Similarity=0.473 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
....++|||.|||++ +++++|+++|++||+|..|.| +++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999 999999999999999999998 378999999999999999999999999999999999
Q ss_pred ecCC
Q 022827 174 VGTN 177 (291)
Q Consensus 174 a~~~ 177 (291)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=124.58 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||+|||+++|+++|+++|++||.|.+| +.++ ++. ||||+|.+.++|++||+ ||+..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 4454 554 99999999999999998 9999999999999987
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
....
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6554
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=125.32 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v-~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.....++|||+|||+++++++|+++|++||.|..| .|+.++. .+.|||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 33467899999999999999999999999999999 5887752 2349999999999999999999999999999999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3e-19 Score=139.61 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~--------v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
.+.++|||+|||+++++++|+++|++||.|.. |.|+.++ ++.+++||||+|.+.++|++||+.||+..|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 8999997 89999999999999999999999999999999
Q ss_pred eeeEEEEecCCC
Q 022827 167 KPMKIEVVGTNA 178 (291)
Q Consensus 167 ~~i~V~~a~~~~ 178 (291)
+.|+|+++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987654
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.8e-17 Score=135.23 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++||+.||+..|.|++|+|++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999877 589999999999999999999999999999999999
Q ss_pred ecCC
Q 022827 174 VGTN 177 (291)
Q Consensus 174 a~~~ 177 (291)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-17 Score=122.46 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+.++|||.|| ++|+++|+++|++||+|..|.|. .+++||||+|.+.++|++||+.||+..|+++.|+|+++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 46789999996 89999999999999999999985 458999999999999999999999999999999999988
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=4.6e-17 Score=133.33 Aligned_cols=82 Identities=29% Similarity=0.427 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+.++|||+|||+++|+++|+++|+.||+|..|.|+.++ ++.+++||||+|.+.++|++|++.||+..+.+++|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35899999999999999999999999999999999998 99999999999999999999999999999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.7e-17 Score=123.34 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
...++|||+|||+++++++|+++|++| .|.+|.|. .++|||||+|.+.++|++||+.||+..|+|++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 356899999999999999999999999 99999885 468999999999999999999999999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 150
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=128.68 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=71.7
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee-----CC
Q 022827 94 GIEVGTKLYV--SNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL-----DG 166 (291)
Q Consensus 94 ~~~~~~~l~V--~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l-----~g 166 (291)
...+.++||| +||++++|+++|+++|++||+|..|.|+.+ ++||||+|.+.++|++||+.||+.+| .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 3456789999 669999999999999999999999888654 78999999999999999999999988 68
Q ss_pred eeeEEEEecCCC
Q 022827 167 KPMKIEVVGTNA 178 (291)
Q Consensus 167 ~~i~V~~a~~~~ 178 (291)
++|.|.++..-+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999987554
No 151
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=121.58 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCCCcE-EEEcCCCCCCCHHH----HHHHHHhc-CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 022827 95 IEVGTK-LYVSNLHPGVTNDD----IRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (291)
Q Consensus 95 ~~~~~~-l~V~nL~~~~te~d----L~~~F~~~-G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~ 168 (291)
.+++.| |||.|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.||+..|.|++
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 345555 99999999999988 55899999 599987 22 99999999999999999999999999999
Q ss_pred eEEEEecCCCCCcc
Q 022827 169 MKIEVVGTNAEIPL 182 (291)
Q Consensus 169 i~V~~a~~~~~~~~ 182 (291)
|+|++++.+...-.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999998875433
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=5.9e-17 Score=138.65 Aligned_cols=84 Identities=21% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||.|||+++|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.+.+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87753
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.9e-17 Score=131.81 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
...+.++|||.|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eec
Q 022827 173 VVG 175 (291)
Q Consensus 173 ~a~ 175 (291)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 154
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=6e-17 Score=133.93 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC--eeeEEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g--~~i~V~~ 173 (291)
....+|||.||++.+|+++|+++|++||+|++|.|.... +++||||+|.+.++|++|++.||+..|.+ +.|+|++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 445679999999999999999999999999999987542 57899999999999999999999999965 9999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=4.9e-17 Score=133.60 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+.++|||+|||+++++++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.++.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999997 89999999999999999999999999999999999999988
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 655
No 156
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.1e-17 Score=129.51 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=71.2
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcC----HHH----HHHHHH--HhCCce
Q 022827 99 TKLYVSNL----HPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYAR----RSD----AFAALK--RYNNVL 163 (291)
Q Consensus 99 ~~l~V~nL----~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~----~~~----A~~Ai~--~lng~~ 163 (291)
++|||+|| |+.|++++|+++|++||+|.+|.++.|+ |+.++|||||+|.+ +++ |.+||+ .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999 99999999999996 333 889988 789999
Q ss_pred eCCeeeEEEEecC
Q 022827 164 LDGKPMKIEVVGT 176 (291)
Q Consensus 164 l~g~~i~V~~a~~ 176 (291)
|+|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 157
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=7.8e-17 Score=127.71 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceE-EEEEEcCHHHHHHHHHHhCCceeCC--eeeEEEEec
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIEVVG 175 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~-afV~F~~~~~A~~Ai~~lng~~l~g--~~i~V~~a~ 175 (291)
..|||.||++.+|+++|+++|++||+|++|.|+.. .|| |||+|.+.++|++||+.||+..|.+ +.|+|++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999998653 376 9999999999999999999999987 689999988
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 664
No 158
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=6.8e-17 Score=119.22 Aligned_cols=71 Identities=21% Similarity=0.454 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
.+.++|||+|||+++++++|+++|++| | +|.+|.+..+ ++||||+|.+.++|++|| .||+..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 467899999999999999999999999 8 8999999866 899999999999999999 9999999
Q ss_pred CCeeeEEE
Q 022827 165 DGKPMKIE 172 (291)
Q Consensus 165 ~g~~i~V~ 172 (291)
+|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999997
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=9.9e-17 Score=135.21 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
......++|||+|||+++|+++|+++|+.||+|.+|.|+.++ ++.++|||||+|.+.++|++||+. ++..|.++.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 344577899999999999999999999999999999999998 899999999999999999999965 899999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.++....
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987654
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.1e-16 Score=127.66 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceE-EEEEEcCHHHHHHHHHHhCCceeCC--eeeEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIE 172 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~-afV~F~~~~~A~~Ai~~lng~~l~g--~~i~V~ 172 (291)
..-..|||.||++.+|+++|+++|++||+|.+|.|... .++| |||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34457889999999999999999999999999988764 2677 9999999999999999999999988 899999
Q ss_pred EecCCC
Q 022827 173 VVGTNA 178 (291)
Q Consensus 173 ~a~~~~ 178 (291)
++++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998653
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-16 Score=130.41 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=75.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
++|||+|||+++|+++|+++|++||+|.+|.|+.++++.+++||||+|.+.++|++|++.||+..|.++.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999987654
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=2.1e-16 Score=133.40 Aligned_cols=83 Identities=23% Similarity=0.369 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
.+.++|||.|||+.+++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 567899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.7e-16 Score=131.03 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||.|||+.+|+++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred c
Q 022827 175 G 175 (291)
Q Consensus 175 ~ 175 (291)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=124.10 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-C---CCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-t---g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
....++|||+|||+++|+++|+++|++||+|. +.++.+. + ++++|||||+|.+.++|++||+.|+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45679999999999999999999999999999 8888776 5 7999999999999999999999984 47888877
Q ss_pred EEEecCC
Q 022827 171 IEVVGTN 177 (291)
Q Consensus 171 V~~a~~~ 177 (291)
+..+...
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 7654433
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.5e-16 Score=137.01 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..++|||.|||+.+|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|++||+.||+..|+|++|+|.++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457999999999999999999999999999999998863 3699999999999999999999999999999999999876
Q ss_pred CC
Q 022827 177 NA 178 (291)
Q Consensus 177 ~~ 178 (291)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1e-16 Score=119.63 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=62.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCc--eeCCeeeEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV--LLDGKPMKI 171 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~--~l~g~~i~V 171 (291)
...+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ +++. .+.++.|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 3457799999999999999999999999999999999875 68999999999999984 3444 456999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987654
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.1e-16 Score=135.85 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=73.0
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~-~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
++++|||+||| +.+|+++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++||+.||+..|.|++|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 67899999999 899999999999999999999998763 7999999999999999999999999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 554
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.4e-16 Score=132.84 Aligned_cols=83 Identities=16% Similarity=0.307 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||.|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 456899999999999999999999999999999999998 899999999999999999999976 899999999999999
Q ss_pred cCCCC
Q 022827 175 GTNAE 179 (291)
Q Consensus 175 ~~~~~ 179 (291)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87764
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.2e-16 Score=131.22 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
+.++|||.|||+++|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++ +|+..|+|++|+|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45799999999999999999999999999999999997 89999999999999999999997 89999999999999987
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=4.2e-16 Score=128.68 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC---CeeeEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKIE 172 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~---g~~i~V~ 172 (291)
...++|||.|||+.+|+++|+++|++||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..+. +++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3668999999999999999999999999999999999999999999999999999999999999998776 4999999
Q ss_pred Eec
Q 022827 173 VVG 175 (291)
Q Consensus 173 ~a~ 175 (291)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=3.2e-16 Score=123.69 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
..+.++|||+|| ++|+++|+++|++||+|..|.|. .+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 356899999996 69999999999999999999986 45899999999999999999999999999999999999
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8765
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.7e-17 Score=119.01 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +++||||+|.+.++|++|+.. ...+.++.|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 46799999999999999999999999999999999865 589999999999999865432 356689999999887
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=6.3e-16 Score=126.94 Aligned_cols=80 Identities=35% Similarity=0.601 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCC--eeeEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKI 171 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g--~~i~V 171 (291)
..+.++|||.|||+.+++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.||+..|.+ ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999999999988 99999
Q ss_pred EEe
Q 022827 172 EVV 174 (291)
Q Consensus 172 ~~a 174 (291)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=3.4e-16 Score=133.88 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
..++|||.|||+++|+++|+++|++||+|.+|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999998876
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.3e-15 Score=117.30 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 022827 96 EVGTKLYVSNLHP-----GVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (291)
Q Consensus 96 ~~~~~l~V~nL~~-----~~te~dL~~~F~~~G~v~~v~i~~d~--tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~ 168 (291)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3678999999963 24789999999999999999999986 3688999999999999999999999999999999
Q ss_pred eEEEEecC
Q 022827 169 MKIEVVGT 176 (291)
Q Consensus 169 i~V~~a~~ 176 (291)
|.|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1e-15 Score=126.36 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CC--CCceEEEEEEcCHHHHHHHHHHhCCceeC---CeeeE
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMK 170 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~---g~~i~ 170 (291)
..++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++ .+++||||+|.+.++|++||+.||+..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998 44 88999999999999999999999998775 67888
Q ss_pred EEEecCCCC
Q 022827 171 IEVVGTNAE 179 (291)
Q Consensus 171 V~~a~~~~~ 179 (291)
|.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 887765543
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=8.8e-16 Score=130.80 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~ 176 (291)
..++|||.|||+++|+++|+++|++||+|..|.|+.+.++.++|||||+|.+.++|++||+.+ +..|+|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 348999999999999999999999999999999999989999999999999999999999765 4699999999998765
Q ss_pred C
Q 022827 177 N 177 (291)
Q Consensus 177 ~ 177 (291)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.3e-15 Score=124.56 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCee--eEEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP--MKIE 172 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~--i~V~ 172 (291)
...++|||.|||+.+++++|+++|++||.|..|.|+.+. ++.+++||||+|.+.++|++|++.||+..|.|+. |+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999965 7777
Q ss_pred Ee
Q 022827 173 VV 174 (291)
Q Consensus 173 ~a 174 (291)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.4e-15 Score=135.91 Aligned_cols=83 Identities=23% Similarity=0.426 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
...+.++|||+|||+++|+++|+ ++|+.||.|.+|.|+. +++++|||||+|.+.++|++||+.||+..|.++.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 45678999999999999999966 8999999999998875 67889999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 022827 170 KIEVVGTNA 178 (291)
Q Consensus 170 ~V~~a~~~~ 178 (291)
+|+++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997655
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=6.1e-16 Score=135.74 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee
Q 022827 94 GIEVGTKLYVSNLHPGV---------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~---------te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
.....++|||+||++.+ +|++|+++|++||+|.+|.|+.+ ++||||+|.+.++|+.|+++||+..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 35678899999999998 79999999999999999999965 89999999999999999999999999
Q ss_pred ------------CCeeeEEEEecCCCC
Q 022827 165 ------------DGKPMKIEVVGTNAE 179 (291)
Q Consensus 165 ------------~g~~i~V~~a~~~~~ 179 (291)
.++.|.|.|+...+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987764
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=9.3e-16 Score=127.15 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+.++|||.|||+.+|+++|+++|++||.|..+ ..++.+++||||+|.+.++|++||+.||+..|+|+.|+|+++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 456899999999999999999999999988755 5588899999999999999999999999999999999999997
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=8.2e-16 Score=126.24 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
++++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|++||+. ...|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999999997 899999999999999999999984 578999999999876
Q ss_pred CC
Q 022827 176 TN 177 (291)
Q Consensus 176 ~~ 177 (291)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.5e-15 Score=132.18 Aligned_cols=80 Identities=33% Similarity=0.417 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 95 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
..++++|||+|||+ ++++++|+++|++||.|.+|.|+.++ ++||||+|.+.++|++||+.||+..|.++.|.|++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45789999999999 99999999999999999999999885 78999999999999999999999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+....
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 87654
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4e-15 Score=133.02 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 022827 94 GIEVGTKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~-te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~ 172 (291)
.....++|||.|||+.+ |+++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+||+.||+..|.|++|+|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022827 173 VVGTNAE 179 (291)
Q Consensus 173 ~a~~~~~ 179 (291)
++.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987764
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=3e-15 Score=134.38 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCC--CCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKN--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~v~~v~i~~d~t--g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
..+.++|||.|||+. +|+++|+++|+.||.|..|.|+.+.+ +.+++||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999886 999999999999999999999 99999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.++.+++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998753
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.9e-15 Score=113.28 Aligned_cols=80 Identities=16% Similarity=0.376 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCcee
Q 022827 96 EVGTKLYVSNLHPGVT-----------NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~t-----------e~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (291)
.++++|+|.||..... +++|+++|++||+|.+|.| .++ .++|||||+|.+.++|++||+.||+..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4678999999944332 5899999999999999965 554 3799999999999999999999999999
Q ss_pred CCeeeEEEEecCCC
Q 022827 165 DGKPMKIEVVGTNA 178 (291)
Q Consensus 165 ~g~~i~V~~a~~~~ 178 (291)
++++|+|+++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999987654
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=4.5e-15 Score=127.53 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCe--eEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe----ee
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL--KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK----PM 169 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v--~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~----~i 169 (291)
+++++|||.|||+++|+++|+++|++||.| .+|.|+.++ +..++||||+|.+.++|.+||..||+..|.+. ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 467899999999999999999999999999 889888776 45569999999999999999999999999887 67
Q ss_pred EEEEe
Q 022827 170 KIEVV 174 (291)
Q Consensus 170 ~V~~a 174 (291)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=7.8e-15 Score=131.01 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC-CeeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-g~~i~V~~ 173 (291)
..+.++|||.|||+.+|+++|+++|++||.|.+|.|+.++ ++||||+|.+.++|++||+.||+..|. ++.|+|+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 4567899999999999999999999999999999999764 589999999999999999999999999 99999999
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.4e-14 Score=129.39 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
+..++|||.|||+.+|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.5e-15 Score=125.80 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
...+.++|||+|||+++|+++|+++|++||.|..+.|....++.++|||||+|.+.++|++|| +||+..|.++.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 446789999999999999999999999999877633333347888999999999999999999 5999999999999999
Q ss_pred ecCCC
Q 022827 174 VGTNA 178 (291)
Q Consensus 174 a~~~~ 178 (291)
+....
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=4.8e-15 Score=125.51 Aligned_cols=78 Identities=33% Similarity=0.446 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022827 97 VGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (291)
Q Consensus 97 ~~~~l~V~nL~~-~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~ 175 (291)
.+++|||+|||+ .+++++|+++|++||.|.+|.|+.++ ++||||+|.+.++|++||+.||+..|.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 468999999999 99999999999999999999999875 7899999999999999999999999999999999987
Q ss_pred CCC
Q 022827 176 TNA 178 (291)
Q Consensus 176 ~~~ 178 (291)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.3e-14 Score=128.74 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
....++|||+|||+++|+++|+++|+.||.|..|.|..+ ++||||+|.+.++|++||+.||+..|.++.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 356689999999999999999999999999999999755 799999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 94 ~~~~ 97 (261)
T 3sde_A 94 THGA 97 (261)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7643
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=122.86 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC-CeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-g~~i~V~ 172 (291)
.++.++|||.|||+.+++++|+++|++|| .|..|.|+.+. ++||||+|.+.++|++||+.||+..|. +++|+|.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 34689999999999999999999999999 99999997643 789999999999999999999999999 9999999
Q ss_pred EecCC
Q 022827 173 VVGTN 177 (291)
Q Consensus 173 ~a~~~ 177 (291)
++++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4.2e-15 Score=114.18 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=64.9
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 103 VSNLHPGVTNDDIRELF------------SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 103 V~nL~~~~te~dL~~~F------------~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
+.+|++.+++++|+++| ++||+|.+|.|+.+.+++++|||||+|.+.++|++|++.||+..|+|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777887777666 999999999999988889999999999999999999999999999999999
Q ss_pred EEEe
Q 022827 171 IEVV 174 (291)
Q Consensus 171 V~~a 174 (291)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2.2e-14 Score=110.33 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=70.9
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCCC---CCCceEEEEEEcCHHHHHHHHHHhCCc
Q 022827 96 EVGTKLYVSNL--HPGVT--------NDDIRELFSEIGELKRYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNV 162 (291)
Q Consensus 96 ~~~~~l~V~nL--~~~~t--------e~dL~~~F~~~G~v~~v~i~~d~t---g~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (291)
.+++.|.|.|+ |.++. ++||+++|++||+|.+|.|+.++. ..++|||||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 43443 368999999999999999998873 367999999999999999999999999
Q ss_pred eeCCeeeEEEEecC
Q 022827 163 LLDGKPMKIEVVGT 176 (291)
Q Consensus 163 ~l~g~~i~V~~a~~ 176 (291)
.|+|+.|+|+++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.5e-14 Score=124.46 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC-CeeeEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 172 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-g~~i~V~ 172 (291)
..+.++|||.|||+.+++++|+++|++|| .|..|.|+.+ .++||||+|.+.++|++||+.||+..|. ++.|+|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 34679999999999999999999999999 9999999653 2789999999999999999999999999 9999999
Q ss_pred EecCC
Q 022827 173 VVGTN 177 (291)
Q Consensus 173 ~a~~~ 177 (291)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98764
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=2.9e-14 Score=117.44 Aligned_cols=76 Identities=20% Similarity=0.398 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
+.++|||+|||+++|+++|+++|++| | .|.++.+..+ ++||||+|.+.++|++|| .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 56899999999999999999999999 6 6777777644 899999999999999999 99999999
Q ss_pred CeeeEEEEecCCC
Q 022827 166 GKPMKIEVVGTNA 178 (291)
Q Consensus 166 g~~i~V~~a~~~~ 178 (291)
++.|+|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999876553
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=4e-14 Score=125.58 Aligned_cols=83 Identities=29% Similarity=0.461 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCC-ceeC---CeeeEE
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLD---GKPMKI 171 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-~~l~---g~~i~V 171 (291)
.+.++|||.|||+.+|+++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+||+.||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999954 4444 899999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987653
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=2.8e-14 Score=128.01 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022827 96 EVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a 174 (291)
...++|||.|||+.+++++|+++|+.|| .|..|.|+.++.+.+++||||+|.+.++|++||+.||+..|.++.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999 999999999888889999999999999999999999999999999999998
Q ss_pred cCCC
Q 022827 175 GTNA 178 (291)
Q Consensus 175 ~~~~ 178 (291)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7654
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=4.2e-14 Score=119.15 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
..++|||+|||+++|+++|+++|++| | .|.++.+. .+++||||+|.+.++|++|| .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 56899999999999999999999999 5 56666554 44899999999999999999 89999999
Q ss_pred CeeeEEEEecCCC
Q 022827 166 GKPMKIEVVGTNA 178 (291)
Q Consensus 166 g~~i~V~~a~~~~ 178 (291)
++.|+|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999876553
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=1e-13 Score=108.89 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=70.3
Q ss_pred CCcEEEEcCCC--CC---CCHHHHHHHHHhcCCeeEEEEeeCCC-----CCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 97 VGTKLYVSNLH--PG---VTNDDIRELFSEIGELKRYAIHFDKN-----GRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 97 ~~~~l~V~nL~--~~---~te~dL~~~F~~~G~v~~v~i~~d~t-----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
++++|+|.||- .+ -.++||+++|++||+|.+|.|+.++. ++++||+||+|.+.++|++|++.||+..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67999999983 22 23689999999999999999998862 4678999999999999999999999999999
Q ss_pred eeeEEEEecC
Q 022827 167 KPMKIEVVGT 176 (291)
Q Consensus 167 ~~i~V~~a~~ 176 (291)
+.|+|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999764
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.2e-13 Score=102.24 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=63.8
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 022827 98 GTKLYVSNLH-------PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (291)
Q Consensus 98 ~~~l~V~nL~-------~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~ 170 (291)
..+|.|.-.. ..+++++|+++|++||+|..|.|+ +.++|||||+|.+.++|++||+.++ .+.+++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEE
Confidence 4566665443 568999999999999999999998 3579999999999999999998854 46799999
Q ss_pred EEEecCCCC
Q 022827 171 IEVVGTNAE 179 (291)
Q Consensus 171 V~~a~~~~~ 179 (291)
|+++.+.+.
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999887754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=1.5e-13 Score=126.50 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC---Ce-
Q 022827 94 GIEVGTKLYVSN--LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GK- 167 (291)
Q Consensus 94 ~~~~~~~l~V~n--L~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~---g~- 167 (291)
...++.+|||+| |++.+||++|+++|++||+|++|.|.. +++||||+|.+.++|++||+.||+.++. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 356789999999 589999999999999999999887754 3799999999999999999999998873 34
Q ss_pred -eeEEEEec
Q 022827 168 -PMKIEVVG 175 (291)
Q Consensus 168 -~i~V~~a~ 175 (291)
+|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2.6e-12 Score=100.16 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 96 EVGTKLYVSNLHPGV----------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~----------te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
.+++.|.|.|+=... .++||+++|++||.|.+|.|..+. ++||+||+|.+.++|++|++.||+..|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467889999982211 125789999999999999887653 5899999999999999999999999999
Q ss_pred CeeeEEEEecCC
Q 022827 166 GKPMKIEVVGTN 177 (291)
Q Consensus 166 g~~i~V~~a~~~ 177 (291)
|+.|+|+++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998643
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.3e-12 Score=100.24 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=74.2
Q ss_pred CCCCCCCCcEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC-HHHHHHHHHHhC--CceeCC
Q 022827 91 GISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAALKRYN--NVLLDG 166 (291)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~-~~~A~~Ai~~ln--g~~l~g 166 (291)
+.-..++++.|||.||+++ +++++|+++|++||+|.+|.|..+. -+|||.|.+ +++|+.|++.|| +..|++
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 4456679999999999999 9999999999999999999999884 369999999 899999999995 688999
Q ss_pred eeeEEEEecCCCC
Q 022827 167 KPMKIEVVGTNAE 179 (291)
Q Consensus 167 ~~i~V~~a~~~~~ 179 (291)
..+++++.....+
T Consensus 86 ~~~~~evL~GeeE 98 (121)
T 1owx_A 86 KEVTWEVLEGEVE 98 (121)
T ss_dssp SSEEEEECCHHHH
T ss_pred cEEEEEECCCHHH
Confidence 9999998775543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=90.65 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 022827 96 EVGTKLYVSNLHP----GVTN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (291)
Q Consensus 96 ~~~~~l~V~nL~~----~~te----~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~ 167 (291)
++..||+|.-++. +.-. .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+ ||+..+.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 3667888877652 2333 5789999999999999999873 8999999999999997 999999999
Q ss_pred eeEEEEecCCC
Q 022827 168 PMKIEVVGTNA 178 (291)
Q Consensus 168 ~i~V~~a~~~~ 178 (291)
.|+|+++++.-
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999988764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.8e-10 Score=85.75 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCCcEEEEcCCCCC------CCH---HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 022827 96 EVGTKLYVSNLHPG------VTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 96 ~~~~~l~V~nL~~~------~te---~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
++..||+|.-++.. ..+ .+|.+.|++||+|..++|+.++ +||+|.+.++|.+||+ ||+..+.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 47789999988643 221 4689999999999999999883 9999999999999997 99999999
Q ss_pred eeeEEEEec
Q 022827 167 KPMKIEVVG 175 (291)
Q Consensus 167 ~~i~V~~a~ 175 (291)
+.|+|.+..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=2.1e-09 Score=92.63 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCCCCcEEEEcCC-----CCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCCCceEEEEEEcCHHHHHHHHHHhCCc
Q 022827 93 SGIEVGTKLYVSNL-----HPGVTNDDIRELFSEIGELKRYAIHFDK-----NGRPSGSAEVVYARRSDAFAALKRYNNV 162 (291)
Q Consensus 93 ~~~~~~~~l~V~nL-----~~~~te~dL~~~F~~~G~v~~v~i~~d~-----tg~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (291)
........+.+.|+ ..+-.+++|.+.|++||.|.+|.|+.+. +++++|++||+|.+.++|++||+.||+.
T Consensus 119 ~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 119 GSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp CSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 33444556666665 2234567899999999999999998654 4488999999999999999999999999
Q ss_pred eeCCeeeEEEEecC
Q 022827 163 LLDGKPMKIEVVGT 176 (291)
Q Consensus 163 ~l~g~~i~V~~a~~ 176 (291)
.|+|+.|.|+++..
T Consensus 199 ~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 199 WFAGRKVVAEVYDQ 212 (222)
T ss_dssp BSSSSBCEEEECCH
T ss_pred eECCeEEEEEEcCH
Confidence 99999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.3e-07 Score=70.45 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~-----G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
.+..++|-|-|||..|+++.|+.|++++ +.|++|.+..| .+-|+|+|.+...|-+|.-+|++.+|++++|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3457899999999999999999999999 99999999988 5569999999999999999999999999999
Q ss_pred EEEE
Q 022827 170 KIEV 173 (291)
Q Consensus 170 ~V~~ 173 (291)
++--
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9863
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=8.6e-06 Score=61.43 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCC-CH----HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 022827 97 VGTKLYVSNLHPGV-TN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (291)
Q Consensus 97 ~~~~l~V~nL~~~~-te----~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V 171 (291)
-.++|+|.||+.+| +. +.++++|..|.++........ -.=..|.|.++++|.+|-..||+..+.|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 45789999998865 32 467899999999988776644 235789999999999999999999999999999
Q ss_pred EEecCCC
Q 022827 172 EVVGTNA 178 (291)
Q Consensus 172 ~~a~~~~ 178 (291)
-++++..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9988543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=5.6e-05 Score=56.79 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~-----G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i 169 (291)
....++|.|.|||+.++++.|+-+|+.- |+|..|.... ..|+|+|.+.+.|++.|++ ..+.|++.+|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 3467899999999999999999999862 5888877753 4799999999999999853 4688999999
Q ss_pred EEEEecCCC
Q 022827 170 KIEVVGTNA 178 (291)
Q Consensus 170 ~V~~a~~~~ 178 (291)
.|.-..+..
T Consensus 77 sV~P~~~~~ 85 (104)
T 2dhx_A 77 SLRPAPPRA 85 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEcCCCCC
Confidence 997644443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.79 E-value=0.00015 Score=53.49 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=55.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CC--CCceEEEEEEcCHHHHHHHHHHhCCceeC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (291)
++|.|.+||+.+||+++.+.+..+..+.....+..+ +. ..-.-|||.|.+.+++....+.++++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 689999999999999999999988877766665554 22 23467999999999999999999998764
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.68 E-value=0.00015 Score=53.93 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=45.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
...++| ++|.++...||.++|+.||.|. |..+.|. .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 345555 9999999999999999999554 6666662 79999999999999998763
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.00036 Score=53.91 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=58.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCC-eeeEEEE
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KPMKIEV 173 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g-~~i~V~~ 173 (291)
....+-|.|-+.|+.. ...|...|++||+|.+..... ...+..|.|.++.+|++|| ..|+..|.+ .-|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 3456889999999885 466778999999999876621 1458999999999999999 569999985 5566665
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00047 Score=51.36 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
..++| ++|.++...||.++|+.||. ..|..+.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 45556 99999999999999999994 446777662 79999999999999998764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.02 E-value=0.00089 Score=49.81 Aligned_cols=78 Identities=13% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CC--CCceEEEEEEcCHHHHHHHHHHhCCceeCCe-----e
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----P 168 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~-----~ 168 (291)
-+-+|.|..||+.+||+++.+.+..+-++.....+..+ +- ..-.-|||.|.+.+++....+.+++..+-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 45689999999999999988888765444322222222 11 1124589999999999999999999876432 3
Q ss_pred eEEEEe
Q 022827 169 MKIEVV 174 (291)
Q Consensus 169 i~V~~a 174 (291)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445554
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.65 E-value=0.001 Score=63.15 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=42.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
.++|||. +|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++.++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 4799998 89999999999999999999988776553 46999999999999977643
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.22 E-value=0.0052 Score=49.13 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.6
Q ss_pred EEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCc
Q 022827 127 RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 162 (291)
Q Consensus 127 ~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (291)
.+.|+.+.. .++||+||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 355666654 57999999999999999999988753
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.94 E-value=0.013 Score=45.93 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=54.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeC--------C-CC-----CCceEEEEEEcCHHHHHHHHHHhCC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFD--------K-NG-----RPSGSAEVVYARRSDAFAALKRYNN 161 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~-v~i~~d--------~-tg-----~~kG~afV~F~~~~~A~~Ai~~lng 161 (291)
..+-|.|-+.|+..+ ..+-+.|++||.|.+ +.+..+ + .. ....+..|+|+++.+|++|| ..|+
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 346677888877665 456668999999875 221110 0 00 02457899999999999999 6799
Q ss_pred ceeCCeeeEEEEecC
Q 022827 162 VLLDGKPMKIEVVGT 176 (291)
Q Consensus 162 ~~l~g~~i~V~~a~~ 176 (291)
..|.|.-|-|....+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888876643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.84 E-value=0.008 Score=47.71 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=35.6
Q ss_pred CCceEEEEEEcCHHHHHHHHHHh-CCceeCCeeeEEEEecC
Q 022827 137 RPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVVGT 176 (291)
Q Consensus 137 ~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~g~~i~V~~a~~ 176 (291)
..+|+++|+|.+.++|++|++.| |+..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999999 9999999 999987654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.88 E-value=0.52 Score=45.14 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=44.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
...++|+ +|..+...+|.++|+.||.| +|.++.+ -.|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 3466665 88899999999999999954 4555544 369999999999999999885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=88.69 E-value=0.81 Score=31.65 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=43.2
Q ss_pred EEEEcC-CCCCCCHHHHHHHHHhcCC-----eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022827 100 KLYVSN-LHPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (291)
Q Consensus 100 ~l~V~n-L~~~~te~dL~~~F~~~G~-----v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~ 173 (291)
+|||.- -...++..+|..++..-+. |-.|.|..+ |.||+-.. +.|..+++.|+...+.++.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 456642 2344677788888865443 446677533 78888775 468889999999999999999987
Q ss_pred ec
Q 022827 174 VG 175 (291)
Q Consensus 174 a~ 175 (291)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=87.45 E-value=3.4 Score=29.87 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh
Q 022827 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
....|-|.|-|||..+-..++.-.....|---.|..+ .|.|.|.|.+.++..-||..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 4567899999999999999887777777766666665 467999999999999999877
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=74.77 E-value=9.4 Score=25.25 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|++.+.. -.|..+.+... ...+.|+|.+.++..++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 57889999887778899999998 88888888765 567889988777777888664
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.45 E-value=6.3 Score=32.01 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=38.2
Q ss_pred EEEEcCCCC---------CCCHHHHHHHH--HhcCCeeEEEEeeCCCCCCceEEEEEEcC-HHHHHHHH
Q 022827 100 KLYVSNLHP---------GVTNDDIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAAL 156 (291)
Q Consensus 100 ~l~V~nL~~---------~~te~dL~~~F--~~~G~v~~v~i~~d~tg~~kG~afV~F~~-~~~A~~Ai 156 (291)
++.|-|+|. ..+..+|++.| +.|.+++ |..++++.+ +.|+|.|+|.+ -.-...|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHH
Confidence 566778876 14457899977 8998866 666666655 47899999995 33344444
No 226
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=62.20 E-value=1.6 Score=32.44 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCCCCHHH
Q 022827 96 EVGTKLYVSNLHPGVTNDD 114 (291)
Q Consensus 96 ~~~~~l~V~nL~~~~te~d 114 (291)
...++|||.|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999864
No 227
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=59.50 E-value=28 Score=22.60 Aligned_cols=56 Identities=9% Similarity=0.219 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc----CHHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|++.+...-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888766666789999998878888888765 557889985 566777777664
No 228
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=52.05 E-value=38 Score=20.71 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc---CHHHHHHHHHHh
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKRY 159 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~l 159 (291)
++.|.++.-..-...|++.+...-.|..+.+... .+.+.|+|. +.+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-----KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-----CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4667777655555778888888877887777655 456888886 345556666543
No 229
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=49.33 E-value=54 Score=23.98 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHH-HhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022827 105 NLHPGVTNDDIRELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (291)
Q Consensus 105 nL~~~~te~dL~~~F-~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~g~~i~V~~a~~~~ 178 (291)
-++..+.-+||..-. ..||.-..+....+ -..|-..+.++..+||+.|+-. ..-+.|+|-+..++.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 457778888887655 57888666655522 2778899999999999988644 344567776666554
No 230
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=48.20 E-value=23 Score=22.61 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc---CHHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKR 158 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~ 158 (291)
.++.|.++.-..-...|++.+...-.|..+.+... ...+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888776666789999998888888888765 456888884 34566666654
No 231
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=47.66 E-value=48 Score=20.58 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=38.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC---HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR---RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~---~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCCCHHHHHHHHHHc
Confidence 46778888755555778888988878888887755 4568888873 34445556544
No 232
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=46.06 E-value=13 Score=36.45 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=42.4
Q ss_pred cCCCCCCCHHHHHHHHH----hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHh
Q 022827 104 SNLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 104 ~nL~~~~te~dL~~~F~----~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (291)
..++.+.+--||..+|- .+|.|.++.|...+--....+++|.|.+.++|.+|+..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34455555568999993 688899888876654445678899999999999998766
No 233
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=46.03 E-value=52 Score=20.45 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=38.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC---HHHHHHHHHH
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR---RSDAFAALKR 158 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~---~~~A~~Ai~~ 158 (291)
++.|.++.-..-...|++.+...-.|..+.+... ...+.|+|.. .++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP-----KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT-----TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888766566788899988878888887765 4567888864 4555566654
No 234
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=44.96 E-value=65 Score=21.31 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=42.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc----CHHHHHHHHHHh
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (291)
..+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.+....+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD-----NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346889898877667889999998888888887655 457888885 345666677654
No 235
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=43.58 E-value=55 Score=20.07 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=39.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKR 158 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~ 158 (291)
.++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .+....+|+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK-----KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 36788888776667789999988877888877655 4568888863 4455555644
No 236
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=43.49 E-value=63 Score=20.77 Aligned_cols=57 Identities=9% Similarity=0.185 Sum_probs=42.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
..++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 346889999887778889999998877877777655 4578888863 45566667654
No 237
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=43.10 E-value=59 Score=20.25 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=38.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA-----EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888755455678888888877888777654 4568888863 45556666553
No 238
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=41.46 E-value=63 Score=20.11 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE-----TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888776667788999998888888877655 4568888863 45566666554
No 239
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=41.08 E-value=93 Score=22.20 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~-----~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA-----TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT-----TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46888888877777889999998877888887755 4678899873 45556666554
No 240
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=39.30 E-value=72 Score=20.17 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=38.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778887655555678888988878888877655 4568888863 45566667654
No 241
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=38.81 E-value=8 Score=29.32 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=4.3
Q ss_pred ChHHHHHh
Q 022827 8 SLDDIIKS 15 (291)
Q Consensus 8 sLddii~~ 15 (291)
.+|.+|.+
T Consensus 75 ~~d~~l~~ 82 (119)
T 1b34_A 75 PLDTLLVD 82 (119)
T ss_dssp CHHHHTC-
T ss_pred ccchhHhh
Confidence 56666654
No 242
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=37.87 E-value=1e+02 Score=22.49 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=42.2
Q ss_pred CcEEEEcCCCCCCCHHH--HHHHHH----h-c------C--CeeEEEEeeCC-C--CCCceEEEEEEcCHH---HHHHHH
Q 022827 98 GTKLYVSNLHPGVTNDD--IRELFS----E-I------G--ELKRYAIHFDK-N--GRPSGSAEVVYARRS---DAFAAL 156 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~d--L~~~F~----~-~------G--~v~~v~i~~d~-t--g~~kG~afV~F~~~~---~A~~Ai 156 (291)
-+.|.|-+||....+.. +..||. + | . .|..+.-...+ + ....-...|.|.... ...+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36789999998743222 333432 2 2 1 23344333222 1 112335677777654 455555
Q ss_pred HHhCCceeCCeeeEEE
Q 022827 157 KRYNNVLLDGKPMKIE 172 (291)
Q Consensus 157 ~~lng~~l~g~~i~V~ 172 (291)
.+.+...+.|.+|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5666788999999886
No 243
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.63 E-value=83 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=25.7
Q ss_pred eeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCc
Q 022827 125 LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 162 (291)
Q Consensus 125 v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (291)
|..|.+.. ...||.||++...++...+|+...+.
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555543 36899999999999888888777664
No 244
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=37.40 E-value=55 Score=20.42 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=38.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA-----NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 35778787654445678888888777877777655 4578888863 45566667654
No 245
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=37.04 E-value=77 Score=19.86 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=40.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHH
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKR 158 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~ 158 (291)
..++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+|+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA-----TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT-----TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357889999877777888999988878888877655 4578888864 2344555544
No 246
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=34.43 E-value=3.3 Score=38.68 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=10.4
Q ss_pred HHHHHHhcCCeeEE
Q 022827 115 IRELFSEIGELKRY 128 (291)
Q Consensus 115 L~~~F~~~G~v~~v 128 (291)
|.+||..+++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 66788888777765
No 247
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=33.91 E-value=89 Score=19.66 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC--HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR--RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~--~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~-----~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA-----TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT-----TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec-----CCEEEEEECCCCHHHHHHHHHHc
Confidence 36788888776666788999988877888877755 4568888875 34455566554
No 248
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=33.68 E-value=77 Score=19.64 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=36.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc---CHHHHHHHHHHh
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKRY 159 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~l 159 (291)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV-----TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT-----TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5677777655455678888888777777666544 456788886 345556666554
No 249
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=33.30 E-value=57 Score=22.26 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~-----~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE-----NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT-----TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778877655455678888888878888888765 4578888863 45566667554
No 250
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=32.46 E-value=45 Score=20.86 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=35.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
++.|.++.-..-...|+..+... .|..+.+... .+.+.|+|...+....+|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE-----EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT-----TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC-----CCEEEEEECCHHHHHHHHHH
Confidence 46666665544456788888888 7887777655 45788888765444455543
No 251
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=31.65 E-value=1.4e+02 Score=23.11 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHHHhcCCeeEEEEeeCC--CCC--------------CceEEEEEEcCHHHHHHHHHHh
Q 022827 115 IRELFSEIGELKRYAIHFDK--NGR--------------PSGSAEVVYARRSDAFAALKRY 159 (291)
Q Consensus 115 L~~~F~~~G~v~~v~i~~d~--tg~--------------~kG~afV~F~~~~~A~~Ai~~l 159 (291)
-.++|.+||.+..|...-+. .|+ .--|.+|+|.+.+...++.+++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 35789999998877665442 232 3458999999999998888643
No 252
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=31.54 E-value=60 Score=20.81 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc----CHHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM-----AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT-----TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 36778888766666778888888777776665543 346788885 345566667654
No 253
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=31.32 E-value=96 Score=19.28 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=40.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA-----TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46888888776666779999988777887777654 4568888853 45556666554
No 254
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=31.31 E-value=49 Score=30.97 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHH----hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 107 HPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 107 ~~~~te~dL~~~F~----~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
..+.+.-||..+|. .+|.|.++.+...+.......+++.|.+.++|.+++..+.
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 33444456777773 4577888877665544445678999999999998887763
No 255
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=31.10 E-value=88 Score=18.78 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=37.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE-----AGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5777777654445668888888777887777654 4568888863 45555666543
No 256
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=31.09 E-value=1.1e+02 Score=22.56 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc----CHHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 76 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 76 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA-----LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46888888877777888999988877877777654 456888886 456667777665
No 257
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=30.20 E-value=89 Score=22.95 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc----CHHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (291)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA-----TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT-----TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC-----CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 46888888766566778899988878888887765 457888886 456667777665
No 258
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=29.96 E-value=23 Score=33.50 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHHH--HhcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 114 DIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 114 dL~~~F--~~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
+|..|| +.+|.|.++.+...+.......+++.|.+.++|.+|++.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 263 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDA 263 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHH
Confidence 567778 368999988877665444455678999987776664433
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.66 E-value=47 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=24.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v 128 (291)
...+.|+|||+.++...|.+++.. ..+..+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 356789999999999999999987 454433
No 260
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.01 E-value=5.9 Score=31.26 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc
Q 022827 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 147 (291)
Q Consensus 113 ~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~ 147 (291)
+|+.+||...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 566777777777763322 2789999865
No 261
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=27.83 E-value=95 Score=24.16 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=35.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~-~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
+-+|+ ++...+..+|++.+++ |+ .|..|..+.-+.+.- -|||.+....+|......
T Consensus 81 ~~vF~--Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQ--VSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHHH
T ss_pred EEEEE--EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHHh
Confidence 34444 6778899999888864 44 456666655544432 499999876666554433
No 262
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=27.48 E-value=95 Score=24.39 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=36.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~-~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (291)
+-+|+ ++...+..+|++.++. |+ .|..|..+.-+.+.- -|||.+....+|......
T Consensus 89 ~~vF~--Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFY--VHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHHH
T ss_pred EEEEE--EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHHh
Confidence 44454 5777899999888864 44 456666655544432 499999876666554433
No 263
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=26.80 E-value=1.2e+02 Score=19.07 Aligned_cols=53 Identities=15% Similarity=0.347 Sum_probs=36.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc-CHHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA-RRSDAFAALKR 158 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~-~~~~A~~Ai~~ 158 (291)
.++.| ++.-..-...|++.+...-.| .+.+... ...+.|++. +.++..++|+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~-----~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLP-----NKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETT-----TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcC-----CCEEEEEecCCHHHHHHHHHH
Confidence 35677 777655567788888887777 8877765 345777774 56667777754
No 264
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=32.51 E-value=14 Score=27.43 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=37.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCceEE--EEEEcCHHHHHHHHHHhCCceeCC
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSA--EVVYARRSDAFAALKRYNNVLLDG 166 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~-tg~~kG~a--fV~F~~~~~A~~Ai~~lng~~l~g 166 (291)
..+|-|..+ .++++|..+..+.. +..+.|.... +|+. -|. +=.|.+.++|.+|++.|....-..
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 445555444 35667777777665 3444444332 3332 233 237999999999999887544333
No 265
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.18 E-value=2.2e+02 Score=24.02 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCCC--HHHHHHHHH-----hcCCe--------eEEEEeeCC---CCCCceEEEEEEcCHHH---HHHH
Q 022827 97 VGTKLYVSNLHPGVT--NDDIRELFS-----EIGEL--------KRYAIHFDK---NGRPSGSAEVVYARRSD---AFAA 155 (291)
Q Consensus 97 ~~~~l~V~nL~~~~t--e~dL~~~F~-----~~G~v--------~~v~i~~d~---tg~~kG~afV~F~~~~~---A~~A 155 (291)
.-+.|.|-+||.... +..+..||. .|-.+ ..+.=...+ .....-.-.|.|....+ ..+|
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHH
Confidence 458999999999876 444554543 24432 222211111 01112246677766554 4455
Q ss_pred HHHhCCceeCCeeeEEEEe
Q 022827 156 LKRYNNVLLDGKPMKIEVV 174 (291)
Q Consensus 156 i~~lng~~l~g~~i~V~~a 174 (291)
....+.+.+.|.+|.+...
T Consensus 131 aR~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HHTTSCEEETTEEEEEEEC
T ss_pred HHHhcccccCCCceEEeCC
Confidence 5455678899999988753
No 266
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=25.98 E-value=1.5e+02 Score=21.64 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=33.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHh-------cCCeeEEEEeeCCCCCC---ceEEEEEEcCHHHHHH
Q 022827 100 KLYVSNLHPGVTNDDIRELFSE-------IGELKRYAIHFDKNGRP---SGSAEVVYARRSDAFA 154 (291)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~-------~G~v~~v~i~~d~tg~~---kG~afV~F~~~~~A~~ 154 (291)
.|.+-.|..+++++++.++... .-.|+.+.+-.+.+... .-..+++|++.++.+.
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHH
Confidence 4445568889988876655543 33466677766654332 2234568888776654
No 267
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=25.63 E-value=1.2e+02 Score=18.40 Aligned_cols=55 Identities=9% Similarity=0.192 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKR 158 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~ 158 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVA-----TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT-----TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888766566778888888777877777654 4567888863 3445555644
No 268
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=25.44 E-value=32 Score=22.07 Aligned_cols=16 Identities=13% Similarity=0.499 Sum_probs=11.2
Q ss_pred CCcCCCChHHHHHhcc
Q 022827 2 ATHVDMSLDDIIKSRK 17 (291)
Q Consensus 2 ~~~ld~sLddii~~~~ 17 (291)
...+.+||+||++-++
T Consensus 22 ~~~~E~sfeEllA~sR 37 (54)
T 2i3t_B 22 GGRLEFSLEEVLAISR 37 (54)
T ss_dssp ---CBCCHHHHHHHTT
T ss_pred cccceeeHHHHHHHhc
Confidence 3457999999999763
No 269
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.81 E-value=27 Score=30.21 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~ 131 (291)
...+.|.|||+.++...|..++.....+..+.++
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 3467899999999999999999765445544333
No 270
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.79 E-value=98 Score=21.62 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=37.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc-CHHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA-RRSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~-~~~~A~~Ai~~l 159 (291)
.+|.|. +.-..-...|++.+...-.|..+.|... ...+.|+|. +.++..++|+.+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~-----~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE-----DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT-----TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC-----CCEEEEEEeCCHHHHHHHHHHh
Confidence 356666 6544444678888888878888888765 456778875 456666677553
No 271
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.63 E-value=1.3e+02 Score=22.00 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=27.2
Q ss_pred CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhCCce
Q 022827 124 ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (291)
Q Consensus 124 ~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~ 163 (291)
.|.+|....+ .+||-|||=.+..++..||+-+.+..
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4666655433 48999999999999999997765543
No 272
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=24.34 E-value=99 Score=23.38 Aligned_cols=36 Identities=11% Similarity=-0.111 Sum_probs=20.3
Q ss_pred cCCeeEEEEeeCCCCCCceEEEEE-EcCHHHHHHHHHHhC
Q 022827 122 IGELKRYAIHFDKNGRPSGSAEVV-YARRSDAFAALKRYN 160 (291)
Q Consensus 122 ~G~v~~v~i~~d~tg~~kG~afV~-F~~~~~A~~Ai~~ln 160 (291)
+=.|..|.|..|- +...+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHHHHH
Confidence 4478888888772 23445555 445554444444443
No 273
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=24.28 E-value=1.9e+02 Score=20.36 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=33.1
Q ss_pred EEEcCCCCCCCHHHHHHHHH-------hcCCeeEEEEeeCCCCCC---ceEEEEEEcCHHHHHH
Q 022827 101 LYVSNLHPGVTNDDIRELFS-------EIGELKRYAIHFDKNGRP---SGSAEVVYARRSDAFA 154 (291)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~-------~~G~v~~v~i~~d~tg~~---kG~afV~F~~~~~A~~ 154 (291)
|.+-.|...++++++.++.. +.-.|+.+.+-.+.+... .-..+++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHH
Confidence 33445788888776554442 356678888777654332 2334568998876543
No 274
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.93 E-value=16 Score=32.95 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=3.4
Q ss_pred CChHHHH
Q 022827 7 MSLDDII 13 (291)
Q Consensus 7 ~sLddii 13 (291)
.+|+||+
T Consensus 99 ~~l~d~v 105 (358)
T 2pk2_A 99 KKLEHVI 105 (358)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 3455554
No 275
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.90 E-value=53 Score=27.81 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=21.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCee
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELK 126 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~ 126 (291)
..+.|+|||+.++...|.+++...-.+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcc
Confidence 4688999999999999988887543333
No 276
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=22.06 E-value=48 Score=31.99 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHH----hcCCeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHHHHhC
Q 022827 107 HPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (291)
Q Consensus 107 ~~~~te~dL~~~F~----~~G~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (291)
+...+.-||..+|. .+|.|.++.+...+.-....++++.|.+.++|.+|+..+.
T Consensus 282 ~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 282 ARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -----CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 33334456777763 5677888877666543445678999999999999887664
No 277
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=21.79 E-value=89 Score=24.61 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=34.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~-~G-~v~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (291)
+-+|+ ++...+..+|++.+++ |+ .|..|..+.-+.+.- -|||.+..-.+|....
T Consensus 91 ~~vF~--Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvA 146 (152)
T 3iz5_X 91 TLVFI--VDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKK--KAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEE--ECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHH
T ss_pred EEEEE--EcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEcCCCCcHHHHH
Confidence 44454 5667888888877764 44 456666655444432 4999998766655543
No 278
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=21.41 E-value=1.9e+02 Score=19.40 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|...+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP-----SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46889899877777889999988877887777655 4568888863 45556666554
No 279
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=21.22 E-value=1.4e+02 Score=18.81 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=36.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC----HHHHHHHHHHh
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (291)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|.|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA-----LETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS-----SSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778877655445668888887766766655433 4568888863 45556666554
No 280
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.18 E-value=58 Score=27.44 Aligned_cols=30 Identities=17% Similarity=-0.059 Sum_probs=23.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 022827 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (291)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~v~~v 128 (291)
..+.|.|||+.++...|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 458899999999999999999865444433
No 281
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=20.78 E-value=1.5e+02 Score=24.01 Aligned_cols=49 Identities=16% Similarity=-0.003 Sum_probs=30.6
Q ss_pred CcEEEEcCCCCCCCHHHH--------HHHHHhcCCeeEEEEeeCCCCCCceEEEEEEcC
Q 022827 98 GTKLYVSNLHPGVTNDDI--------RELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR 148 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL--------~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~~ 148 (291)
-.+=||--||.+++.++- +++|..+|-|..+-|+.+.. ..-.|.|.|.+
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~--~NpHaHim~t~ 126 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG--ENPHCHLMISE 126 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT--TEEEEEEEECC
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC--CCceEEEEEee
Confidence 344455569999998763 44556667777777776432 23356666654
No 282
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.58 E-value=2.3e+02 Score=19.98 Aligned_cols=64 Identities=8% Similarity=-0.138 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe-eCC-CCCCceEEEEEEc--CHHHHHHHHHHhC
Q 022827 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH-FDK-NGRPSGSAEVVYA--RRSDAFAALKRYN 160 (291)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~-~d~-tg~~kG~afV~F~--~~~~A~~Ai~~ln 160 (291)
....|.|.=....+.+-.|.++..+|+.-.+|.-- .+. .+.+.|+-+|++. +.++.++|++.|.
T Consensus 19 ~~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 19 DAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp TCEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 33455555444456667788888888753332111 112 3456788899988 4677788887764
No 283
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=20.29 E-value=1.2e+02 Score=20.50 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCceEEEEEEc-CHHHHHHHHHHh
Q 022827 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA-RRSDAFAALKRY 159 (291)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~v~~v~i~~d~tg~~kG~afV~F~-~~~~A~~Ai~~l 159 (291)
..+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~-----~~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA-----SRTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT-----TTEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC-----CCEEEEEecCCHHHHHHHHHHc
Confidence 346778777655455678888888777887777655 456777764 455566666553
No 284
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=20.26 E-value=65 Score=21.85 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=14.8
Q ss_pred CCChhHHHHHHHHHHHhh
Q 022827 271 DKSADDLDKELDNYHAEA 288 (291)
Q Consensus 271 ~~s~~~~d~el~~y~~~~ 288 (291)
.+..+||++||+..-.|.
T Consensus 7 diDE~eL~aELdaL~~e~ 24 (69)
T 3uly_B 7 ELDEDDLEAELDALGDEL 24 (69)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 689999999999876553
No 285
>1vyi_A RNA polymerase alpha subunit; transferase, replication, transcription, RNA-directed RNA polymerase, phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP: d.293.1.1
Probab=20.04 E-value=42 Score=24.33 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.1
Q ss_pred cCCCChHHHHHhcccC
Q 022827 4 HVDMSLDDIIKSRKKS 19 (291)
Q Consensus 4 ~ld~sLddii~~~~~~ 19 (291)
.|-|-||||.++.+.-
T Consensus 44 qlkmnlDdIv~~a~~i 59 (112)
T 1vyi_A 44 QLKMNLDDIVKEAKNV 59 (112)
T ss_dssp GGCCCHHHHHHHHTTS
T ss_pred HHhccHHHHHHHHhcC
Confidence 5889999999988543
Done!