BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022828
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22769|NDUV2_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3
Length = 255
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/224 (86%), Positives = 207/224 (92%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L HLDSPDN PDLPW+FS+ N+ KVKEILS+YPSNYKQSAVIPLLDLAQQQ+GGWLPVS
Sbjct: 32 LNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLAQQQNGGWLPVS 91
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN VAK+IEVAPIRVYEVATFYSMFNR+KVGKYHLLVCGTTPCM+RGSR+IE ALL HL
Sbjct: 92 AMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGSRDIESALLDHL 151
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
GVKR EVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNY+EDVTP++V+EIVE
Sbjct: 152 GVKRGEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPEKVVEIVE 211
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPPPCRDLDAC 291
LR+GEK P GTQNPKRIK GPEGGN TLL EPKPP RDLDAC
Sbjct: 212 KLRKGEKPPHGTQNPKRIKCGPEGGNKTLLGEPKPPQFRDLDAC 255
>sp|P04394|NDUV2_BOVIN NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Bos taurus GN=NDUFV2 PE=1 SV=3
Length = 249
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 152/216 (70%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNP+ P+ F+ N ++++ I+ +YP +K +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 38 LFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPIS 96
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA+I++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I +A+ K L
Sbjct: 97 AMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKL 156
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D NYYED+TPK + EI++
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIID 206
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
L+ G+ PG ++ R P GG T+L PK P
Sbjct: 207 ELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241
>sp|P19234|NDUV2_RAT NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Rattus norvegicus GN=Ndufv2 PE=1 SV=2
Length = 248
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 151/216 (69%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNPD P+ F+ N E+++ I+ +YP ++ +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNG-WLPIS 95
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA++++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I + L + L
Sbjct: 96 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKL 155
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D +YYED+TPK + EI++
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------DYYEDLTPKDIEEIID 205
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
LR G+ PG ++ R P GG T+L PK P
Sbjct: 206 ELRAGKVPKPGPRS-GRFCCEPAGGLTSLTEPPKGP 240
>sp|Q20719|NDUV2_CAEEL Probable NADH dehydrogenase [ubiquinone] flavoprotein 2,
mitochondrial OS=Caenorhabditis elegans GN=F53F4.10 PE=1
SV=1
Length = 239
Score = 218 bits (554), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 148/224 (66%), Gaps = 13/224 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+ +NN ++ +KF+ N+E++K I+ YP +K A+IPLLDLAQ+QHG WLP+S
Sbjct: 27 LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AM+EVAKI+EV +R YEVATFY+MFNR VGKY L VC TTPCM+RG+ I + + K L
Sbjct: 86 AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKL 145
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+ E TKDGLF++ E+EC+G CVNAPMI + D +Y+ED+TPK V EI++
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQIND----------DYFEDLTPKDVNEILD 195
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPPPCRDLDAC 291
L+ G K P R+ + P G T+L P P P L A
Sbjct: 196 DLKAGRK-PAAGPRSGRLAAEPFGELTSLKETP-PGPGFGLQAA 237
>sp|Q0MQI7|NDUV2_PONPY NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Pongo pygmaeus GN=NDUFV2 PE=2 SV=1
Length = 249
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 151/216 (69%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNPD P+ F+ N ++++ I+ +YP +K +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPIS 96
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA++++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I +A+ K L
Sbjct: 97 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKL 156
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D NYYED+T K + EI++
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIID 206
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
L+ G+ PG ++ R P GG T+L PK P
Sbjct: 207 ELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241
>sp|Q0MQI8|NDUV2_GORGO NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFV2 PE=2 SV=1
Length = 249
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 151/216 (69%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNPD P+ F+ N ++++ I+ +YP +K +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPIS 96
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA++++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I +A+ K L
Sbjct: 97 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKL 156
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D NYYED+T K + EI++
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIID 206
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
L+ G+ PG ++ R P GG T+L PK P
Sbjct: 207 ELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241
>sp|Q0MQI9|NDUV2_PANTR NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Pan troglodytes GN=NDUFV2 PE=2 SV=1
Length = 249
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 151/216 (69%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNPD P+ F+ N ++++ I+ +YP +K +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPIS 96
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA++++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I +A+ K L
Sbjct: 97 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKL 156
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D NYYED+T K + EI++
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIID 206
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
L+ G+ PG ++ R P GG T+L PK P
Sbjct: 207 ELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241
>sp|P19404|NDUV2_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
Length = 249
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 151/216 (69%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNPD P+ F+ N ++++ I+ +YP +K +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 38 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPIS 96
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA++++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I +A+ K L
Sbjct: 97 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKL 156
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D NYYED+T K + EI++
Sbjct: 157 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTAKDIEEIID 206
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
L+ G+ PG ++ R P GG T+L PK P
Sbjct: 207 ELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPKGP 241
>sp|Q9D6J6|NDUV2_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Mus musculus GN=Ndufv2 PE=1 SV=2
Length = 248
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 151/216 (69%), Gaps = 12/216 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H D+P+NNPD P+ F+ N ++++ I+ +YP ++ +AV+P+LDLAQ+Q+G WLP+S
Sbjct: 37 LFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLPVLDLAQRQNG-WLPIS 95
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AMN+VA++++V P+RVYEVATFY+M+NR VGKYH+ VC TTPCM+R S I + L + L
Sbjct: 96 AMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKL 155
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G+K E T D LF++ E+EC+G CVNAPM+ + D NYYED+TPK + EI++
Sbjct: 156 GIKVGETTPDKLFTLIEVECLGACVNAPMVQIND----------NYYEDLTPKDIEEIID 205
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPP 283
L+ G+ PG ++ R P GG T+L PK P
Sbjct: 206 ELKAGKVPKPGPRS-GRFCCEPAGGLTSLTEPPKGP 240
>sp|Q54F10|NDUV2_DICDI NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
OS=Dictyostelium discoideum GN=ndufv2 PE=3 SV=1
Length = 247
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 144/220 (65%), Gaps = 11/220 (5%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L +H+++ DNN P+ F+ N KV++IL+ YP Y+QSA+IPLLDLAQ+Q+GGW+ +
Sbjct: 37 LSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLR 96
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHL 187
AM++VA I +AP+ YEVA+FY+MFNR+K+G+ + VC TTPCM+RGS EI HL
Sbjct: 97 AMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENFVQVCTTTPCMLRGSGEIIKTCKSHL 156
Query: 188 GVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
G++ E T D F++ E+EC+G CVNAPM+ + D ++YED+T I +++
Sbjct: 157 GIQVGETTPDNKFTLVEVECLGACVNAPMMCIND----------DFYEDLTSASTINLLD 206
Query: 248 MLRRGEKLPPGTQNPKRIKSGPEGGNTTLLSEPKPPPCRD 287
++ + G Q ++ GP+ G TTLL P P CRD
Sbjct: 207 QIKNNKPTKIGPQTHRKAAEGPQ-GKTTLLEPPVGPTCRD 245
>sp|P40915|NDUV2_NEUCR NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-24 PE=2 SV=1
Length = 263
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 149/223 (66%), Gaps = 19/223 (8%)
Query: 68 LCKHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVS 127
L H ++PDNNPD+P+KFS N++ ++EI+ YP YK++AV+PLLDL Q+QHG + +S
Sbjct: 46 LMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQHG-FCSIS 104
Query: 128 AMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVR--GSREIEDALLK 185
MNEVA+++E+ P+RVYEVA+FY+M+NR+ VGK+H+ C TTPC + GS I A+ +
Sbjct: 105 VMNEVARLLEMPPMRVYEVASFYTMYNRTPVGKFHVQACTTTPCQLGGCGSDVIVKAIKE 164
Query: 186 HLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEI 245
HLG+K+ E T DGLF+ E+EC+G C NAPM+ + D +Y+ED+TP+ + ++
Sbjct: 165 HLGIKQGETTPDGLFTFIEVECLGACANAPMVQIND----------DYFEDLTPETIKQV 214
Query: 246 VEMLRRG----EKLP-PGTQNPKRIKSGPEGGNTTLLSEPKPP 283
+ L+ K P PG Q+ ++ G T+L SEP P
Sbjct: 215 LSALKESVTDVSKAPQPGPQSGRQTCEN-AAGLTSLTSEPYGP 256
>sp|Q1RJJ1|NUOE_RICBR NADH-quinone oxidoreductase subunit E OS=Rickettsia bellii (strain
RML369-C) GN=nuoE PE=3 SV=1
Length = 167
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 113/168 (67%), Gaps = 10/168 (5%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
+ F N ++I+ YP K+SA++PLLDLAQ+Q+GGWLPV A+ VA ++E+ +R
Sbjct: 8 FSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMR 67
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
YEVATFY+MFN VGK H+ VC TTPC +RGS +I + LG+K EVTKD FS+
Sbjct: 68 AYEVATFYTMFNLKPVGKNHIQVCTTTPCWLRGSDDIMKTCKEKLGIKDEEVTKDQKFSL 127
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
E+EC+G CVNAP++ + D +YYED+TP+++ I++ LR
Sbjct: 128 IEIECLGACVNAPVVQIND----------DYYEDLTPEKMEAIIDKLR 165
>sp|Q92ID9|NUOE_RICCN NADH-quinone oxidoreductase subunit E OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoE PE=3 SV=1
Length = 167
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 10/168 (5%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
+ F N +EI+ YP + K+SA++PLLDLAQ+Q+GGWLPV A+ VA ++ + IR
Sbjct: 8 FTFDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIR 67
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
YEVATFY+MFN +VGKYH+ VC TTPC +RGS +I K LGVK E T+D F++
Sbjct: 68 AYEVATFYTMFNLKRVGKYHIQVCTTTPCWLRGSDDIMKICEKKLGVKLKETTEDQKFTL 127
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
E+EC+G CVNAP++ + D +YYED+T ++ +I++ L+
Sbjct: 128 SEIECLGACVNAPVVQIND----------DYYEDLTQDKMGKIIDKLQ 165
>sp|Q68X20|NUOE_RICTY NADH-quinone oxidoreductase subunit E OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoE PE=3 SV=1
Length = 170
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 110/168 (65%), Gaps = 10/168 (5%)
Query: 80 DLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVA 139
+ + F N + I+ YP N K+SA++PLLDLAQ+Q+GGWL +SA+ VA ++E+
Sbjct: 7 NFTFAFDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMP 66
Query: 140 PIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGL 199
+R YEVATFYSMFN S VGKYH+ VC TTPC +RGS +I K L +K E TKD
Sbjct: 67 YMRAYEVATFYSMFNLSPVGKYHIQVCTTTPCWLRGSDDIMKICEKKLAIKHKETTKDQK 126
Query: 200 FSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
F++ E+EC+G CVNAP++ + D +YYED+ ++ +++E
Sbjct: 127 FTLSEIECLGACVNAPVVQIND----------DYYEDLNEAKMEKLIE 164
>sp|Q4UM09|NUOE_RICFE NADH-quinone oxidoreductase subunit E OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoE PE=3 SV=1
Length = 167
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 112/165 (67%), Gaps = 10/165 (6%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
+ F N ++I+ YP + K+SA++PLLDLAQ+Q+GGWLPV A+ VA ++E+ +R
Sbjct: 5 FTFDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMR 64
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
YEVATFYSMFN +VGKYH+ VC TTPC + GS +I K LG+K E T+D F++
Sbjct: 65 AYEVATFYSMFNLKRVGKYHIQVCTTTPCWLHGSDDIMKICEKKLGIKLKETTEDQKFTL 124
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
E+EC+G CVNAP++ + D +YYED+T +++ ++++
Sbjct: 125 SEIECLGACVNAPVVQIND----------DYYEDLTEEKMEKLID 159
>sp|Q9ZDH5|NUOE_RICPR NADH-quinone oxidoreductase subunit E OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoE PE=3 SV=1
Length = 177
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 10/168 (5%)
Query: 80 DLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVA 139
+ + F N + I+ YP K+SA++PLLDLAQ+Q+GGWL VSA+ VA ++E+
Sbjct: 7 NFTFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMP 66
Query: 140 PIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGL 199
+R YEVATFY+MFN + +GKYH+ VC TTPC +RGS I K L +K E TKD
Sbjct: 67 YMRAYEVATFYTMFNLNPIGKYHIQVCTTTPCWLRGSDNIMKICEKKLAIKHKETTKDQK 126
Query: 200 FSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
F++ E+EC+G CVNAP++ + D +YYED+ ++ +++E
Sbjct: 127 FTLSEIECLGACVNAPVVQIND----------DYYEDLNEAKMEKLIE 164
>sp|P56909|NUOE1_RHIME NADH-quinone oxidoreductase subunit E 1 OS=Rhizobium meliloti
(strain 1021) GN=nuoE1 PE=3 SV=1
Length = 275
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 117/203 (57%), Gaps = 16/203 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
+ FS N + + YP +QSAVIPLL AQ+Q G W+ +A+ VA ++ +A IR
Sbjct: 16 FAFSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDG-WVTRAAIESVADMLGMAYIR 74
Query: 143 VYEVATFYSMFNRSKVG-KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFS 201
V EVATFY+ F VG + H+ VCGTTPCM+RG+ ++ K + + + + G S
Sbjct: 75 VLEVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDLIKICKKKIASEPFTLNEGGTLS 134
Query: 202 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR--RGEKLPPGT 259
E+EC G CVNAPM+ + + +ED+TP+R+ EI++ +G ++ PG
Sbjct: 135 WEEVECQGACVNAPMVMIFK----------DTFEDLTPERLEEIIDRFEAGKGSEVVPGP 184
Query: 260 QNPKRIKSGPEGGNTTLLSEPKP 282
Q R+ S P GG TTL + P+P
Sbjct: 185 QI-DRVYSAPIGGLTTLQA-PEP 205
>sp|Q56221|NQO2_THET8 NADH-quinone oxidoreductase subunit 2 OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=nqo2 PE=1 SV=3
Length = 181
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 85 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144
F D ++ ++E + YP +++A++PLL QQ+ G W+ + E+A+++ P V
Sbjct: 3 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEG-WIRPERIEEIARLVGTTPTEVM 61
Query: 145 EVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGE 204
VA+FYS + GKYHL VC T C + G+ E+ D L + LG+ EVT DGLFSV +
Sbjct: 62 GVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQK 121
Query: 205 MECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLRRGEKL 255
+EC+G C AP+I V D Y E VT R+ ++ LR G++L
Sbjct: 122 VECLGSCHTAPVIQVNDEP---------YVECVTRARLEALLAGLRAGKRL 163
>sp|P29914|NQO2_PARDE NADH-quinone oxidoreductase chain 2 OS=Paracoccus denitrificans
GN=nqo2 PE=1 SV=1
Length = 239
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++F+ N E + ++ YP +QSA+IP+L AQ+Q G WL A+ A ++ + IR
Sbjct: 13 FEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEG-WLSRPAIEYCADLLGMPYIR 71
Query: 143 VYEVATFYSMFNRSKVGKY-HLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFS 201
EVATFY MF VG H+ +CGTT CM+ G+ ++ + + + + ++ DG FS
Sbjct: 72 ALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHALSADGRFS 131
Query: 202 VGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLRRGEKLPPGTQN 261
E+EC+G C NAPM + ++YED+T +++ +++ GE PG QN
Sbjct: 132 WEEVECLGACTNAPMAQIGK----------DFYEDLTVEKLAALIDRFAAGEVPVPGPQN 181
Query: 262 PKRIKSGPEGGNTTL 276
R + GG T L
Sbjct: 182 -GRFSAEALGGPTAL 195
>sp|P56910|NUOE2_RHIME NADH-quinone oxidoreductase subunit E 2 OS=Rhizobium meliloti
(strain 1021) GN=nuoE2 PE=3 SV=2
Length = 168
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 100/168 (59%), Gaps = 13/168 (7%)
Query: 88 TNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVA 147
T +E+++ + YP ++SA++P L +AQ++HG LP + EVA+I+ V + VYE+A
Sbjct: 2 TMREEIEAAAARYPD--RRSAIMPALMIAQKEHG-HLPGPVLEEVAQILGVERVWVYELA 58
Query: 148 TFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMEC 207
TFY++F+ +G++HL +C CM+ GS + L LG+++ E T DG F++ +EC
Sbjct: 59 TFYTLFHTEPIGRFHLQLCDNVSCMLCGSEALLTHLETTLGIRKGETTPDGAFTLSTVEC 118
Query: 208 MGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLRRGEKL 255
+G C AP++ V D +Y+ ++ R+ ++E R E++
Sbjct: 119 LGACEMAPVMQVGD----------DYHGNLDAARLDALLESFRAAERV 156
>sp|P65573|NUOE_MYCTU NADH-quinone oxidoreductase subunit E OS=Mycobacterium tuberculosis
GN=nuoE PE=1 SV=1
Length = 252
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 93 VKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSM 152
KEI+ YP ++SA++PLL L Q + +L + + A + + V VA+FY+M
Sbjct: 44 AKEIIGRYPD--RRSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLTGAEVSAVASFYTM 100
Query: 153 FNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCV 212
+ R G+Y + VC T C V G I D L +HLGV +E T DG+ ++ +EC C
Sbjct: 101 YRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACD 160
Query: 213 NAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
AP++ V + ++++ TP+ E+V+ LR
Sbjct: 161 YAPVVMV----------NWEFFDNQTPESARELVDSLR 188
>sp|P65574|NUOE_MYCBO NADH-quinone oxidoreductase subunit E OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=nuoE PE=3 SV=1
Length = 252
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 93 VKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSM 152
KEI+ YP ++SA++PLL L Q + +L + + A + + V VA+FY+M
Sbjct: 44 AKEIIGRYPD--RRSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLTGAEVSAVASFYTM 100
Query: 153 FNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCV 212
+ R G+Y + VC T C V G I D L +HLGV +E T DG+ ++ +EC C
Sbjct: 101 YRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACD 160
Query: 213 NAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
AP++ V + ++++ TP+ E+V+ LR
Sbjct: 161 YAPVVMV----------NWEFFDNQTPESARELVDSLR 188
>sp|O66842|NUOE_AQUAE NADH-quinone oxidoreductase subunit E OS=Aquifex aeolicus (strain
VF5) GN=nuoE PE=3 SV=1
Length = 160
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++F + K K++E ++++P +Q+ ++ L ++ Q + G++P ++ +A ++E+
Sbjct: 6 FEFPEELKTKLQEHINYFPKK-RQAILLCLHEI--QNYYGYIPPESLKPLADMLELPLNH 62
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V V FY MF+R KY + VC + C + G+ ++ AL LG+K EVT DG F +
Sbjct: 63 VEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKI 122
Query: 203 GEMECMGCCVNAPMITVAD 221
++C+G C AP+ V D
Sbjct: 123 VPVQCLGACSEAPVFMVND 141
>sp|Q89AU3|NUOE_BUCBP NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=nuoE PE=3 SV=1
Length = 171
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 80 DLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVA 139
D+ +K + K ++ I+ +Y + +S++I +L Q+ +G W+ + E+A I++++
Sbjct: 14 DIKFKLTIQEKIEIFNIIKNYRT--VRSSLIEILKFVQKSYG-WISNELITELACILKIS 70
Query: 140 PIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGL 199
+ E+ATFYS R +G+ + C + C V G +I +L K+L V E TKD
Sbjct: 71 KCDIEEIATFYSQIFRQPIGRNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFK 130
Query: 200 FSVGEMECMGCCVNAPMITVAD--YSNGSE 227
F++ + C+G C +P I + D YSN +E
Sbjct: 131 FTLLPICCLGNCDKSPTIMINDDLYSNVTE 160
>sp|Q9I0J8|NUOE_PSEAE NADH-quinone oxidoreductase subunit E OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=nuoE PE=3 SV=1
Length = 166
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
+ S+T + ++ + HY ++A I L + Q+Q G W+P A+ + +++ +
Sbjct: 12 FVLSETERSSIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIPAIGEVLGIPASD 68
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V VATFYS R VG++ + VC + C + G + + K LG+ + T DG F++
Sbjct: 69 VEGVATFYSQIFRQPVGRHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTADGRFTL 128
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
+ C+G C AP + + D ++G DV P V +++E
Sbjct: 129 LPVCCLGNCDKAPALMIDDDTHG----------DVRPDGVAKLLE 163
>sp|Q46505|HNDA_DESFR NADP-reducing hydrogenase subunit HndA OS=Desulfovibrio
fructosovorans GN=hndA PE=1 SV=1
Length = 171
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 105 KQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLL 164
K+ ++ +L AQ G +LP+ VA +EV +VY V +FY+ F GKY +
Sbjct: 38 KEGHLVTVLHKAQSVFG-YLPIEVQQFVADHMEVPLAQVYGVVSFYTFFTMVPKGKYPIS 96
Query: 165 VCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSN 224
VC T C V+G+ ++ A + L + +VT DG FS+ + C+G C AP++ V +
Sbjct: 97 VCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGE--- 153
Query: 225 GSEGYTYNYYEDVTPKRVIEIV 246
Y +VTP +V +I+
Sbjct: 154 -------KVYGNVTPGQVKKIL 168
>sp|P0AFD3|NUOE_SHIFL NADH-quinone oxidoreductase subunit E OS=Shigella flexneri GN=nuoE
PE=3 SV=1
Length = 166
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++ S +E ++ + HY ++A I L + Q+Q G W+P A++ +A ++ +
Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V VATFYS R VG++ + C + C + G + I+ AL K L +K + T DG F++
Sbjct: 69 VEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTL 128
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
C+G C P + + + + + +TP+ + E++E +
Sbjct: 129 LPTCCLGNCDKGPNMMIDE----------DTHAHLTPEAIPELLERYK 166
>sp|P0AFD1|NUOE_ECOLI NADH-quinone oxidoreductase subunit E OS=Escherichia coli (strain
K12) GN=nuoE PE=1 SV=1
Length = 166
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++ S +E ++ + HY ++A I L + Q+Q G W+P A++ +A ++ +
Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V VATFYS R VG++ + C + C + G + I+ AL K L +K + T DG F++
Sbjct: 69 VEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTL 128
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
C+G C P + + + + + +TP+ + E++E +
Sbjct: 129 LPTCCLGNCDKGPNMMIDE----------DTHAHLTPEAIPELLERYK 166
>sp|P0AFD2|NUOE_ECOL6 NADH-quinone oxidoreductase subunit E OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=nuoE PE=3 SV=1
Length = 166
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++ S +E ++ + HY ++A I L + Q+Q G W+P A++ +A ++ +
Sbjct: 12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V VATFYS R VG++ + C + C + G + I+ AL K L +K + T DG F++
Sbjct: 69 VEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTL 128
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
C+G C P + + + + + +TP+ + E++E +
Sbjct: 129 LPTCCLGNCDKGPNMMIDE----------DTHAHLTPEAIPELLERYK 166
>sp|P0A1Y8|NUOE_SALTY NADH-quinone oxidoreductase subunit E OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=nuoE PE=3 SV=1
Length = 166
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++ S +E ++ HY ++A I L + Q+Q G W+P A+ +A ++ +
Sbjct: 12 FELSAAEREAIEHEKHHYED--PRAASIEALKIVQKQRG-WVPDGAIYAIADVLGIPASD 68
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V VATFYS R VG++ + C + C + G + I+ AL K+L +K + T DG F++
Sbjct: 69 VEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAALEKNLNIKPGQTTFDGRFTL 128
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
C+G C P + + + + + +TP+ + E++E +
Sbjct: 129 LPTCCLGNCDKGPNMMIDE----------DTHSHLTPEAIPELLERYK 166
>sp|P0A1Y9|NUOE_SALTI NADH-quinone oxidoreductase subunit E OS=Salmonella typhi GN=nuoE
PE=3 SV=1
Length = 166
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Query: 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIR 142
++ S +E ++ HY ++A I L + Q+Q G W+P A+ +A ++ +
Sbjct: 12 FELSAAEREAIEHEKHHYED--PRAASIEALKIVQKQRG-WVPDGAIYAIADVLGIPASD 68
Query: 143 VYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
V VATFYS R VG++ + C + C + G + I+ AL K+L +K + T DG F++
Sbjct: 69 VEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAALEKNLNIKPGQTTFDGRFTL 128
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLR 250
C+G C P + + + + + +TP+ + E++E +
Sbjct: 129 LPTCCLGNCDKGPNMMIDE----------DTHSHLTPEAIPELLERYK 166
>sp|P57255|NUOE_BUCAI NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=nuoE PE=3 SV=1
Length = 162
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 80 DLPWKFSDTNKE-KVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEV 138
++ KF TN+E E Y +++ + I L + Q++ G W+ A+ +A+I+ +
Sbjct: 3 EISIKFKLTNEEINAIENQKKYYEDFR-AISIEALKIVQKKRG-WVSDQAIYAIAEILHI 60
Query: 139 APIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDG 198
P V VATFYS R VG+ + C + C + G + I+ AL +L +K E TKD
Sbjct: 61 NPSDVEGVATFYSQIFRKPVGRNIIRYCDSVVCFLTGYKRIQIALENYLKIKIGETTKDD 120
Query: 199 LFSVGEMECMGCCVNAPMITV 219
F++ + C+G C P I +
Sbjct: 121 RFTLLPVCCLGNCDKGPTIMI 141
>sp|O13691|NDUV2_SCHPO NADH-ubiquinone oxidoreductase 24 kDa subunit homolog C11E3.12,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC11E3.12 PE=3 SV=1
Length = 162
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 85 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144
F N + K IL+ YP ++ +A++PLLDLAQ+QHG W+P +AM E+A + V+ V+
Sbjct: 7 FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66
Query: 145 EVATFY--SMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSV 202
+ Y F R K K + +C + C + R+ TK G F V
Sbjct: 67 SLILAYPNDFFWRPK--KPRVRICNSWMCQQAAEEQGNSNWDSQC---RSVATKYG-FDV 120
Query: 203 GEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEML 249
C+G C P + + D G T +++++I+E L
Sbjct: 121 ENTGCLGNCFQGPAMWINDKIYGVN----------TKEKLVDIMEAL 157
>sp|Q8K9Y4|NUOE_BUCAP NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=nuoE PE=3 SV=1
Length = 168
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 106 QSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLV 165
+S I L + Q++ G W+ A+ E+A I+ + P V VATFYS R VG+ +
Sbjct: 35 RSVSIEALKIVQKKRG-WVCDQAIIEIANILNLNPSEVESVATFYSQIYRQPVGRNVIRY 93
Query: 166 CGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD 221
C + C + G +I+ L +L +K T DG F++ + C+G C AP I + +
Sbjct: 94 CDSVVCYLTGYEKIKKFLEDYLFIKIGNTTVDGRFTLLPVCCLGNCDKAPTIMINE 149
>sp|P22317|HOXF_CUPNH NAD-reducing hydrogenase HoxS subunit alpha OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=hoxF PE=1 SV=1
Length = 602
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 92 KVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYS 151
++ IL Y S+ ++ +I +L Q ++G +P + + ++ ++++P+ + E A+FY
Sbjct: 4 RITTILERYRSD--RTRLIDILWDVQHEYG-HIPDAVLPQLGAGLKLSPLDIRETASFYH 60
Query: 152 MFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCC 211
F GKY + +C + + G + + +AL + G++ E +G+F + + C+G
Sbjct: 61 FFLDKPSGKYRIYLCNSVIAKINGYQAVREALERETGIRFGETDPNGMFGLFDTPCIGLS 120
Query: 212 VNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLRRGEKLPPGTQNPKRIKS 267
P + + + + P ++ +I+ L++G + P NP + S
Sbjct: 121 DQEPAMLIDKV----------VFTRLRPGKITDIIAQLKQG-RSPAEIANPAGLPS 165
>sp|Q9FJ70|FIMB3_ARATH Putative fimbrin-like protein 3 OS=Arabidopsis thaliana GN=FIM3
PE=3 SV=1
Length = 714
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 168 TTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEM--ECMGCCVNAPMITVADYSNG 225
T +V GS + A + + +RN ++ DG FS EM E + C + + S G
Sbjct: 348 TAEEIVEGSSYLNLAFVAQIFHERNGLSTDGRFSFAEMMTEDLQTCRDERCYRLWINSLG 407
Query: 226 SEGYTYNYYEDVTPKRVIEIVEMLRRGEKLPPGTQNPKRIKSGP 269
E Y N +EDV + +L +K+ PG+ N K+ P
Sbjct: 408 IESYVNNVFEDVRNGWI-----LLEVVDKVYPGSVNWKQASKPP 446
>sp|O87688|CBIW_BACME Putative 2Fe-2S ferredoxin OS=Bacillus megaterium GN=cbiW PE=3 SV=1
Length = 127
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 160 KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEM--ECMGCCVNAPMI 217
K+H+L+C + CM +G E A+ RN+V + L C G C +AP+
Sbjct: 12 KHHVLICNGSSCMRKGGEEATQAI-------RNKVAELNLDEAVHTTRTCNGRCKDAPVA 64
Query: 218 TVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247
V Y +G ++Y+ VT K IVE
Sbjct: 65 IV--YPSG------DWYKQVTEKVAHRIVE 86
>sp|Q7G188|FIMB1_ARATH Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2
Length = 687
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 168 TTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEM--ECMGCCVNAPMITVADYSNG 225
T +V GS + A + + +RN + KDG ++ EM E + C + + S G
Sbjct: 347 TAEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLG 406
Query: 226 SEGYTYNYYEDVTPKRVIEIVEMLRRGEKLPPGTQNPKRIKSGP 269
+ Y N +EDV + ++E+L +K+ P + N K P
Sbjct: 407 IDSYVNNVFEDVRNGWI--LLEVL---DKVSPSSVNWKHASKPP 445
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana
GN=PGSIP6 PE=2 SV=1
Length = 537
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 122 GWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIED 181
GW V ++ +A +V P R + V T +FN + K L T + IED
Sbjct: 82 GW-KVEKISLLANPNQVHPTRFWGVYTKLKIFNMTDYKKVVYLDADTIVV-----KNIED 135
Query: 182 --------ALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNY 233
A LKH +E G+ V E + + + T++ Y+ G +G+ +Y
Sbjct: 136 LFKCSKFCANLKH-----SERLNSGVMVVEPSEALFNDMMRKVKTLSSYTGGDQGFLNSY 190
Query: 234 YEDVTPKRVIE 244
Y D RV +
Sbjct: 191 YPDFPNARVFD 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,252,806
Number of Sequences: 539616
Number of extensions: 4828601
Number of successful extensions: 14000
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13926
Number of HSP's gapped (non-prelim): 47
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)