Query 022828
Match_columns 291
No_of_seqs 249 out of 1673
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_2 NADH-quinone oxidoreduc 100.0 3.8E-51 1.3E-55 359.7 16.5 163 83-256 1-164 (181)
2 2auv_A Potential NAD-reducing 99.9 8.2E-25 2.8E-29 168.7 4.4 85 155-249 1-85 (85)
3 1m2d_A [2Fe-2S] ferredoxin; th 99.8 3.6E-19 1.2E-23 143.4 7.0 87 159-256 2-97 (110)
4 2q24_A Putative TETR family tr 79.2 0.89 3E-05 36.7 2.2 43 105-157 16-59 (194)
5 2rek_A Putative TETR-family tr 74.8 1 3.5E-05 36.4 1.4 41 107-157 19-60 (199)
6 2k9l_A RNA polymerase sigma fa 74.4 4.8 0.00016 29.7 4.9 70 80-153 5-75 (76)
7 1akh_A Protein (mating-type pr 72.9 5 0.00017 27.6 4.5 36 109-145 16-51 (61)
8 1ig7_A Homeotic protein MSX-1; 69.9 6.8 0.00023 26.7 4.5 34 110-144 12-45 (58)
9 2qwt_A Transcriptional regulat 68.9 2.1 7.3E-05 34.7 2.0 41 107-157 16-57 (196)
10 1jgg_A Segmentation protein EV 68.6 7.1 0.00024 26.9 4.4 34 110-144 13-46 (60)
11 3a03_A T-cell leukemia homeobo 67.4 8.2 0.00028 26.3 4.5 34 110-144 9-42 (56)
12 3ccy_A Putative TETR-family tr 67.2 3.3 0.00011 33.5 2.8 44 105-157 15-59 (203)
13 2dmu_A Homeobox protein goosec 66.5 8.1 0.00028 27.4 4.5 23 122-144 30-52 (70)
14 2h1k_A IPF-1, pancreatic and d 66.4 8.5 0.00029 26.8 4.5 34 110-144 15-48 (63)
15 3he0_A Transcriptional regulat 66.4 3.3 0.00011 32.8 2.7 44 105-157 12-56 (196)
16 2yqk_A Arginine-glutamic acid 66.3 8.8 0.0003 27.3 4.6 52 83-160 10-61 (63)
17 2da2_A Alpha-fetoprotein enhan 66.2 8.3 0.00029 27.3 4.5 23 122-144 30-52 (70)
18 3bni_A Putative TETR-family tr 66.1 1.4 4.6E-05 37.0 0.3 43 106-157 45-88 (229)
19 2hdd_A Protein (engrailed home 65.9 8.9 0.00031 26.4 4.5 34 110-144 15-48 (61)
20 3ppb_A Putative TETR family tr 65.4 2.7 9.1E-05 33.1 1.9 44 105-157 10-54 (195)
21 2cra_A Homeobox protein HOX-B1 65.0 9.3 0.00032 27.1 4.6 23 122-144 30-52 (70)
22 3a02_A Homeobox protein arista 64.7 9.6 0.00033 26.2 4.5 34 110-144 11-44 (60)
23 2e1o_A Homeobox protein PRH; D 64.2 9.7 0.00033 27.0 4.6 23 122-144 30-52 (70)
24 2vi6_A Homeobox protein nanog; 64.0 10 0.00034 26.3 4.5 34 110-144 15-48 (62)
25 3jsj_A Putative TETR-family tr 63.7 2.8 9.7E-05 33.3 1.7 43 105-157 10-53 (190)
26 2zcm_A Biofilm operon icaabcd 63.3 3.2 0.00011 33.1 2.0 44 105-157 8-52 (192)
27 2v57_A TETR family transcripti 63.1 3.2 0.00011 32.9 1.9 27 125-157 31-57 (190)
28 2yve_A Transcriptional regulat 63.0 3.4 0.00012 33.2 2.1 44 105-157 5-49 (185)
29 4hku_A LMO2814 protein, TETR t 62.7 4.4 0.00015 32.4 2.7 44 105-157 8-52 (178)
30 2dg7_A Putative transcriptiona 62.7 3.3 0.00011 33.2 2.0 45 105-158 8-53 (195)
31 2rae_A Transcriptional regulat 62.3 3.7 0.00013 33.0 2.2 45 105-158 18-63 (207)
32 1bw5_A ISL-1HD, insulin gene e 62.2 11 0.00037 26.4 4.4 34 110-144 15-48 (66)
33 2da1_A Alpha-fetoprotein enhan 62.2 8.5 0.00029 27.2 3.9 23 122-144 30-52 (70)
34 2g7g_A RHA04620, putative tran 61.9 3.2 0.00011 34.9 1.8 41 105-156 12-53 (213)
35 1ftt_A TTF-1 HD, thyroid trans 61.6 11 0.00039 26.6 4.5 34 110-144 14-47 (68)
36 3rkq_A Homeobox protein NKX-2. 61.5 10 0.00034 25.5 4.0 34 110-144 14-47 (58)
37 2iai_A Putative transcriptiona 61.5 5.5 0.00019 33.1 3.2 44 105-157 31-75 (230)
38 2djn_A Homeobox protein DLX-5; 61.4 9.2 0.00031 27.2 4.0 23 122-144 30-52 (70)
39 2k40_A Homeobox expressed in E 61.3 9.6 0.00033 26.8 4.0 35 110-145 13-47 (67)
40 2da3_A Alpha-fetoprotein enhan 61.2 11 0.00038 27.2 4.5 23 122-144 40-62 (80)
41 2dmq_A LIM/homeobox protein LH 60.2 12 0.00042 27.1 4.6 23 122-144 30-52 (80)
42 2qib_A TETR-family transcripti 60.1 3.5 0.00012 34.4 1.7 41 107-156 16-57 (231)
43 3qkx_A Uncharacterized HTH-typ 60.0 4.2 0.00014 31.8 2.1 42 107-157 11-53 (188)
44 3anp_C Transcriptional repress 59.9 4.2 0.00014 32.9 2.2 41 108-157 13-54 (204)
45 2dmt_A Homeobox protein BARH-l 59.7 12 0.00043 27.2 4.5 23 122-144 40-62 (80)
46 1puf_A HOX-1.7, homeobox prote 59.7 12 0.00043 27.0 4.5 23 122-144 36-58 (77)
47 3egq_A TETR family transcripti 59.5 3.1 0.00011 32.6 1.2 43 106-157 6-49 (170)
48 3lwj_A Putative TETR-family tr 59.1 3.9 0.00013 32.6 1.8 42 107-157 15-57 (202)
49 1du6_A PBX1, homeobox protein 58.5 12 0.0004 26.0 4.0 23 122-144 29-51 (64)
50 1pb6_A Hypothetical transcript 58.5 4.1 0.00014 32.7 1.8 43 106-157 20-63 (212)
51 3him_A Probable transcriptiona 58.4 4.8 0.00017 32.0 2.2 43 106-157 18-61 (211)
52 1ui5_A A-factor receptor homol 58.2 3.7 0.00013 34.0 1.5 44 105-157 10-54 (215)
53 2dms_A Homeobox protein OTX2; 57.9 14 0.00048 26.9 4.6 23 122-144 30-52 (80)
54 3cjd_A Transcriptional regulat 57.8 3.7 0.00013 33.5 1.5 43 106-157 14-57 (198)
55 1zk8_A Transcriptional regulat 57.5 5.8 0.0002 31.2 2.5 44 105-157 9-53 (183)
56 3dcf_A Transcriptional regulat 56.3 5.1 0.00017 32.1 2.1 43 106-157 33-76 (218)
57 2l7z_A Homeobox protein HOX-A1 56.0 16 0.00054 26.2 4.5 23 122-144 30-52 (73)
58 1nk2_P Homeobox protein VND; h 56.0 16 0.00054 26.4 4.5 23 122-144 32-54 (77)
59 2gen_A Probable transcriptiona 55.6 5.2 0.00018 32.4 2.0 44 105-157 8-52 (197)
60 2w53_A Repressor, SMet; antibi 55.5 6.6 0.00023 32.0 2.7 44 105-157 12-56 (219)
61 1zq3_P PRD-4, homeotic bicoid 55.2 14 0.00047 26.1 4.0 33 111-144 15-47 (68)
62 3lhq_A Acrab operon repressor 55.2 5.1 0.00017 32.0 1.9 43 106-157 16-59 (220)
63 2g7s_A Transcriptional regulat 55.2 4.5 0.00016 31.7 1.6 42 107-157 11-53 (194)
64 2kt0_A Nanog, homeobox protein 55.2 16 0.00056 26.6 4.6 23 122-144 45-67 (84)
65 2f07_A YVDT; helix-turn-helix, 55.1 5.2 0.00018 32.4 1.9 45 105-158 11-56 (197)
66 3f1b_A TETR-like transcription 55.1 5.1 0.00017 31.8 1.8 42 107-157 17-59 (203)
67 1hy9_A Cocaine and amphetamine 54.9 3 0.0001 28.0 0.4 22 1-23 12-33 (41)
68 2m0c_A Homeobox protein arista 54.8 17 0.00059 25.8 4.5 23 122-144 32-54 (75)
69 2cue_A Paired box protein PAX6 54.8 14 0.00048 27.0 4.1 23 122-144 30-52 (80)
70 2qko_A Possible transcriptiona 54.7 5.1 0.00017 32.7 1.8 42 106-156 30-72 (215)
71 3kkc_A TETR family transcripti 54.7 6.6 0.00023 30.6 2.4 43 106-157 14-57 (177)
72 2dg8_A Putative TETR-family tr 54.7 4 0.00014 32.8 1.1 44 105-157 10-54 (193)
73 1fjl_A Paired protein; DNA-bin 54.5 17 0.00058 26.5 4.5 23 122-144 41-63 (81)
74 2da5_A Zinc fingers and homeob 54.4 18 0.0006 26.2 4.5 24 122-145 30-53 (75)
75 1ahd_P Antennapedia protein mu 54.1 14 0.00048 26.2 3.9 34 110-144 14-47 (68)
76 3f0c_A TETR-molecule A, transc 54.1 4.6 0.00016 32.6 1.4 44 105-157 12-56 (216)
77 3dew_A Transcriptional regulat 54.0 3.4 0.00012 32.7 0.6 44 105-157 9-53 (206)
78 3vp5_A Transcriptional regulat 53.5 6.7 0.00023 31.6 2.4 43 106-157 14-57 (189)
79 2dn0_A Zinc fingers and homeob 53.4 15 0.00053 26.4 4.1 24 122-145 31-54 (76)
80 3ni7_A Bacterial regulatory pr 53.3 6 0.00021 33.0 2.1 41 106-155 9-50 (213)
81 3frq_A Repressor protein MPHR( 53.2 3.2 0.00011 33.2 0.4 44 105-157 9-53 (195)
82 3gha_A Disulfide bond formatio 53.1 45 0.0015 28.0 7.7 90 109-253 100-194 (202)
83 3bqz_B HTH-type transcriptiona 53.1 6.4 0.00022 31.0 2.1 43 106-157 4-47 (194)
84 2crg_A Metastasis associated p 53.0 18 0.0006 26.3 4.3 52 83-160 9-60 (70)
85 1uhs_A HOP, homeodomain only p 53.0 17 0.00058 25.9 4.2 36 110-145 13-48 (72)
86 2g7l_A TETR-family transcripti 53.0 6.8 0.00023 33.9 2.4 43 105-156 20-63 (243)
87 1k61_A Mating-type protein alp 52.9 21 0.00072 24.3 4.6 23 122-144 24-46 (60)
88 2i10_A Putative TETR transcrip 52.4 5.8 0.0002 32.3 1.8 43 106-157 13-56 (202)
89 2fd5_A Transcriptional regulat 52.2 8.7 0.0003 30.2 2.8 41 108-157 11-52 (180)
90 2ecc_A Homeobox and leucine zi 51.7 21 0.0007 26.7 4.6 23 122-144 26-48 (76)
91 3b81_A Transcriptional regulat 51.7 7.8 0.00027 30.7 2.4 43 106-157 13-56 (203)
92 1sgm_A Putative HTH-type trans 51.6 6.4 0.00022 30.8 1.9 42 105-155 7-49 (191)
93 2e19_A Transcription factor 8; 51.5 17 0.0006 25.7 4.0 34 110-144 15-48 (64)
94 3nrg_A TETR family transcripti 51.5 8.5 0.00029 30.9 2.6 43 106-157 15-58 (217)
95 3kkd_A Transcriptional regulat 50.7 4.8 0.00016 33.4 1.0 44 105-157 36-80 (237)
96 2l9r_A Homeobox protein NKX-3. 50.6 22 0.00076 25.7 4.5 36 109-145 15-50 (69)
97 1t33_A Putative transcriptiona 50.4 4.5 0.00015 32.9 0.8 40 108-157 16-56 (224)
98 3on4_A Transcriptional regulat 50.4 5.7 0.0002 31.1 1.4 44 105-157 11-55 (191)
99 2hxo_A Putative TETR-family tr 50.4 10 0.00036 32.4 3.2 43 105-156 17-60 (237)
100 1fi6_A EH domain protein REPS1 50.1 22 0.00074 25.9 4.5 48 83-146 1-48 (92)
101 2hi3_A Homeodomain-only protei 50.1 21 0.00071 25.5 4.3 36 110-145 14-49 (73)
102 1b8i_A Ultrabithorax, protein 49.7 22 0.00076 26.0 4.5 23 122-144 43-65 (81)
103 2hku_A A putative transcriptio 49.6 5 0.00017 32.7 1.0 43 105-157 21-64 (215)
104 2ly9_A Zinc fingers and homeob 49.1 24 0.00083 25.1 4.5 23 122-144 29-51 (74)
105 2iu5_A DHAS, YCEG, HTH-type dh 48.9 9.1 0.00031 30.6 2.5 43 105-156 14-57 (195)
106 3bhq_A Transcriptional regulat 48.9 5.1 0.00017 32.6 0.9 42 107-157 15-57 (211)
107 3hta_A EBRA repressor; TETR fa 48.5 6.4 0.00022 32.5 1.5 41 108-157 32-73 (217)
108 3fiw_A Putative TETR-family tr 48.1 9.7 0.00033 31.9 2.6 43 105-156 26-69 (211)
109 3rh2_A Hypothetical TETR-like 47.8 6.2 0.00021 32.0 1.2 43 106-157 5-48 (212)
110 1c07_A Protein (epidermal grow 47.8 14 0.00047 27.2 3.1 46 82-143 1-46 (95)
111 3lsj_A DEST; transcriptional r 47.3 9.6 0.00033 30.9 2.4 29 122-157 29-57 (220)
112 3qbm_A TETR transcriptional re 46.7 8.8 0.0003 30.2 2.0 42 107-157 10-52 (199)
113 3nau_A Zinc fingers and homeob 46.6 25 0.00086 25.7 4.3 33 110-143 16-48 (66)
114 1b72_A Protein (homeobox prote 46.5 21 0.00072 27.0 4.0 33 111-144 47-79 (97)
115 3eup_A Transcriptional regulat 46.2 9.2 0.00032 30.2 2.1 43 106-157 13-56 (204)
116 2y2z_A SIM16, SIMR, putative r 46.2 10 0.00035 33.4 2.6 42 106-156 29-71 (267)
117 3col_A Putative transcription 46.1 9 0.00031 30.0 1.9 44 105-157 11-55 (196)
118 2r5y_A Homeotic protein sex co 45.9 23 0.00078 26.2 4.1 23 122-144 51-73 (88)
119 2eh3_A Transcriptional regulat 45.7 7.5 0.00026 30.7 1.4 41 108-157 6-47 (179)
120 2fq4_A Transcriptional regulat 45.0 7.8 0.00027 31.1 1.4 42 106-156 14-56 (192)
121 1b72_B Protein (PBX1); homeodo 44.7 24 0.00081 25.9 4.0 24 122-145 27-50 (87)
122 1puf_B PRE-B-cell leukemia tra 44.5 25 0.00086 24.9 4.0 24 122-145 27-50 (73)
123 3nxc_A HTH-type protein SLMA; 44.5 9.9 0.00034 30.3 2.0 45 105-157 25-70 (212)
124 3fia_A Intersectin-1; EH 1 dom 44.4 35 0.0012 27.5 5.2 51 74-141 16-66 (121)
125 3on2_A Probable transcriptiona 44.3 8.3 0.00028 30.3 1.5 44 105-157 13-57 (199)
126 2opt_A Actii protein; helical 43.9 9.5 0.00032 32.9 1.9 43 105-156 7-50 (234)
127 2dmp_A Zinc fingers and homeob 43.8 30 0.001 25.9 4.5 24 122-145 36-59 (89)
128 1yz8_P Pituitary homeobox 2; D 43.7 11 0.00036 26.7 1.8 33 111-144 16-48 (68)
129 3pas_A TETR family transcripti 43.6 8.3 0.00029 30.2 1.4 41 108-157 12-53 (195)
130 1rkt_A Protein YFIR; transcrip 43.5 10 0.00035 30.6 1.9 41 108-157 16-57 (205)
131 1x2m_A LAG1 longevity assuranc 43.2 41 0.0014 24.1 4.9 37 108-144 10-46 (64)
132 3hug_A RNA polymerase sigma fa 43.2 16 0.00054 26.9 2.8 48 88-146 26-73 (92)
133 2ras_A Transcriptional regulat 43.1 11 0.00037 30.4 2.0 41 108-157 15-56 (212)
134 3mnl_A KSTR, transcriptional r 43.0 8.8 0.0003 30.4 1.4 37 112-157 29-65 (203)
135 3rd3_A Probable transcriptiona 42.7 11 0.00039 29.5 2.0 45 105-158 11-56 (197)
136 3geu_A Intercellular adhesion 42.5 12 0.0004 29.6 2.1 41 108-157 7-48 (189)
137 2cqx_A LAG1 longevity assuranc 42.3 22 0.00074 25.7 3.4 34 110-144 20-54 (72)
138 2ibd_A Possible transcriptiona 41.8 9.3 0.00032 30.8 1.4 41 108-157 18-59 (204)
139 1eh2_A EPS15; calcium binding, 41.6 29 0.001 26.5 4.3 46 79-141 3-48 (106)
140 3crj_A Transcription regulator 41.4 12 0.00039 30.4 1.9 42 107-157 17-59 (199)
141 2xdn_A HTH-type transcriptiona 41.3 9.9 0.00034 30.7 1.5 42 107-157 14-56 (210)
142 2o7t_A Transcriptional regulat 41.1 9.7 0.00033 30.5 1.4 42 107-157 11-53 (199)
143 3vib_A MTRR; helix-turn-helix 41.0 9.6 0.00033 30.8 1.4 41 108-157 14-55 (210)
144 2oi8_A Putative regulatory pro 40.9 13 0.00046 30.8 2.3 41 108-157 20-61 (216)
145 1x2n_A Homeobox protein pknox1 40.6 39 0.0013 23.9 4.6 23 122-144 33-55 (73)
146 3kz9_A SMCR; transcriptional r 40.6 9.8 0.00034 30.0 1.4 41 108-157 21-62 (206)
147 3vpr_A Transcriptional regulat 40.5 8.8 0.0003 30.5 1.1 43 106-157 5-48 (190)
148 4aci_A HTH-type transcriptiona 40.5 8.8 0.0003 30.3 1.1 44 105-157 15-59 (191)
149 3aqt_A Bacterial regulatory pr 40.4 15 0.0005 30.9 2.5 41 108-157 50-91 (245)
150 1wh7_A ZF-HD homeobox family p 40.2 27 0.00093 25.8 3.7 23 122-144 44-66 (80)
151 2xpw_A Tetracycline repressor 40.1 10 0.00034 31.7 1.4 42 106-156 5-47 (207)
152 3c07_A Putative TETR-family tr 40.1 12 0.00042 32.4 2.0 42 106-156 43-85 (273)
153 3cwr_A Transcriptional regulat 40.1 10 0.00035 29.9 1.4 42 106-156 19-61 (208)
154 3bqy_A Putative TETR family tr 39.9 10 0.00034 31.8 1.4 41 107-156 5-46 (209)
155 3e7q_A Transcriptional regulat 39.7 11 0.00036 30.0 1.4 43 106-157 16-59 (215)
156 2np5_A Transcriptional regulat 39.6 11 0.00036 30.6 1.4 42 106-156 11-53 (203)
157 2zb9_A Putative transcriptiona 39.6 11 0.00036 30.5 1.5 41 108-157 27-68 (214)
158 2hyt_A TETR-family transcripti 39.6 9.5 0.00033 30.7 1.2 41 108-157 16-57 (197)
159 3knw_A Putative transcriptiona 39.6 11 0.00036 30.1 1.4 43 106-157 16-59 (212)
160 2ecb_A Zinc fingers and homeob 39.4 40 0.0014 25.7 4.6 23 122-144 34-56 (89)
161 2cuf_A FLJ21616 protein; homeo 39.4 30 0.001 26.0 3.9 23 122-144 30-67 (95)
162 3a01_A Homeodomain-containing 38.9 32 0.0011 25.9 4.0 23 122-144 40-62 (93)
163 3k2a_A Homeobox protein MEIS2; 38.8 42 0.0014 23.7 4.4 23 122-144 24-46 (67)
164 1wh5_A ZF-HD homeobox family p 38.7 41 0.0014 24.7 4.5 46 82-144 21-66 (80)
165 1z0x_A Transcriptional regulat 38.5 13 0.00046 31.0 1.9 43 105-156 6-50 (220)
166 1tc3_C Protein (TC3 transposas 38.5 17 0.00058 22.3 2.0 23 128-150 23-45 (51)
167 3ljl_A Transcriptional regulat 38.3 13 0.00046 29.0 1.8 41 107-156 17-58 (156)
168 2o8x_A Probable RNA polymerase 38.0 11 0.00036 25.7 1.0 50 86-146 2-51 (70)
169 3bru_A Regulatory protein, TET 38.0 12 0.0004 30.2 1.4 43 106-157 32-75 (222)
170 3cdl_A Transcriptional regulat 37.9 14 0.00049 29.7 2.0 41 107-156 12-53 (203)
171 3loc_A HTH-type transcriptiona 37.9 12 0.00039 29.8 1.4 40 108-156 22-62 (212)
172 2vpr_A Tetracycline resistance 37.8 14 0.00049 30.9 2.0 43 105-156 5-48 (207)
173 2pmy_A RAS and EF-hand domain- 37.7 13 0.00046 26.6 1.6 56 72-143 8-63 (91)
174 1le8_B Mating-type protein alp 37.6 45 0.0015 24.4 4.6 24 122-145 28-51 (83)
175 2nx4_A Transcriptional regulat 37.5 12 0.00041 30.1 1.4 43 106-157 12-55 (194)
176 2lv7_A Calcium-binding protein 37.5 49 0.0017 24.7 4.9 45 81-141 26-70 (100)
177 2jj7_A Hemolysin II regulatory 37.3 10 0.00035 29.8 1.0 40 108-156 11-51 (186)
178 3hz8_A Thiol:disulfide interch 37.3 1.7E+02 0.0058 23.9 9.2 35 112-146 95-130 (193)
179 1vi0_A Transcriptional regulat 37.0 12 0.00041 30.5 1.4 43 106-157 10-53 (206)
180 3nar_A ZHX1, zinc fingers and 36.7 45 0.0015 25.1 4.5 23 122-144 48-70 (96)
181 4ac0_A Tetracycline repressor 36.6 15 0.00051 30.9 1.9 42 106-156 5-47 (202)
182 3bjb_A Probable transcriptiona 36.6 13 0.00043 30.4 1.4 42 106-156 24-66 (207)
183 2of7_A Putative TETR-family tr 36.5 14 0.00049 31.3 1.9 41 108-157 52-93 (260)
184 3qqa_A CMER; alpha-helical, he 36.4 13 0.00045 29.7 1.5 41 108-157 23-64 (216)
185 2wui_A MEXZ, transcriptional r 36.4 12 0.00043 30.3 1.4 42 106-156 13-55 (210)
186 2oer_A Probable transcriptiona 36.3 13 0.00044 30.4 1.4 41 108-157 28-69 (214)
187 2hyj_A Putative TETR-family tr 36.2 16 0.00054 29.5 2.0 41 108-157 16-57 (200)
188 2fbq_A Probable transcriptiona 35.9 15 0.0005 30.7 1.8 40 107-155 10-50 (235)
189 3dpj_A Transcription regulator 35.9 13 0.00045 29.3 1.4 42 107-157 11-53 (194)
190 3mvp_A TETR/ACRR transcription 35.8 13 0.00044 29.7 1.4 41 108-157 30-71 (217)
191 2qtq_A Transcriptional regulat 35.8 12 0.0004 29.9 1.1 44 105-157 17-61 (213)
192 3gzi_A Transcriptional regulat 35.6 12 0.00041 30.1 1.1 41 108-157 21-62 (218)
193 3s5r_A Transcriptional regulat 35.5 11 0.00038 30.1 1.0 44 105-157 11-55 (216)
194 3c2b_A Transcriptional regulat 35.4 12 0.0004 30.3 1.1 43 106-157 17-60 (221)
195 3nnr_A Transcriptional regulat 35.3 13 0.00046 30.3 1.4 43 105-156 6-49 (228)
196 2id6_A Transcriptional regulat 35.2 12 0.00042 30.1 1.2 43 106-157 7-50 (202)
197 2g3b_A Putative TETR-family tr 35.0 12 0.0004 30.6 1.0 40 108-156 7-47 (208)
198 2kgr_A Intersectin-1; structur 34.9 49 0.0017 25.1 4.6 39 80-134 3-41 (111)
199 1mnm_C Protein (MAT alpha-2 tr 34.7 53 0.0018 24.1 4.6 45 82-144 31-75 (87)
200 2np3_A Putative TETR-family re 34.4 12 0.00041 30.3 1.0 43 106-157 32-75 (212)
201 2pz9_A Putative regulatory pro 32.9 15 0.00053 30.2 1.4 43 105-156 31-74 (226)
202 2hxi_A Putative transcriptiona 32.9 15 0.00052 31.5 1.4 44 105-156 30-73 (241)
203 3m6z_A Topoisomerase V; helix- 32.8 26 0.00089 31.9 2.9 63 85-155 162-231 (380)
204 2d6y_A Putative TETR family re 31.9 14 0.00049 29.9 1.1 43 105-156 9-52 (202)
205 3o60_A LIN0861 protein; PSI, M 31.8 19 0.00065 29.3 1.8 42 108-157 23-65 (185)
206 2gfn_A HTH-type transcriptiona 31.8 16 0.00055 29.8 1.3 43 106-157 11-54 (209)
207 2dmn_A Homeobox protein TGIF2L 31.7 68 0.0023 23.5 4.7 24 122-145 33-56 (83)
208 4etm_A LMPTP, low molecular we 31.5 45 0.0015 28.0 4.1 42 161-209 20-61 (173)
209 2id3_A Putative transcriptiona 31.4 15 0.00051 30.3 1.0 42 107-157 43-85 (225)
210 3q0w_A HTH-type transcriptiona 31.1 17 0.00059 30.1 1.4 43 106-157 46-89 (236)
211 2zcx_A SCO7815, TETR-family tr 29.9 21 0.00073 29.8 1.8 43 106-157 25-68 (231)
212 3g7r_A Putative transcriptiona 29.8 19 0.00064 29.5 1.4 44 105-157 36-80 (221)
213 3v6g_A Probable transcriptiona 29.8 18 0.00063 29.7 1.4 44 105-157 15-59 (208)
214 1xn7_A Hypothetical protein YH 29.4 51 0.0017 24.3 3.6 35 109-148 4-38 (78)
215 3g1o_A Transcriptional regulat 29.2 19 0.00066 30.2 1.4 43 106-157 45-88 (255)
216 1iq3_A Ralbp1-interacting prot 29.1 21 0.00072 27.4 1.5 42 81-138 12-53 (110)
217 1d1q_A Tyrosine phosphatase (E 28.9 57 0.0019 26.7 4.2 43 160-209 8-51 (161)
218 2k02_A Ferrous iron transport 28.9 33 0.0011 26.1 2.6 37 109-150 4-40 (87)
219 3npi_A TETR family regulatory 28.8 17 0.0006 30.4 1.1 43 105-156 19-62 (251)
220 3c57_A Two component transcrip 28.6 16 0.00054 27.3 0.7 49 85-145 13-61 (95)
221 3jvi_A Protein tyrosine phosph 27.7 55 0.0019 27.0 3.9 42 160-208 5-46 (161)
222 1u2p_A Ptpase, low molecular w 27.4 63 0.0022 26.5 4.3 43 160-209 5-47 (163)
223 2krc_A DNA-directed RNA polyme 27.2 37 0.0013 26.5 2.6 33 126-158 33-66 (99)
224 2cwd_A Low molecular weight ph 27.2 73 0.0025 26.1 4.6 43 160-209 5-47 (161)
225 2guh_A Putative TETR-family tr 26.6 20 0.00068 29.6 1.0 43 106-157 41-84 (214)
226 1au7_A Protein PIT-1, GHF-1; c 26.1 77 0.0026 25.8 4.5 35 109-144 98-132 (146)
227 1sfx_A Conserved hypothetical 26.0 1.7E+02 0.0057 20.7 6.0 53 88-148 4-56 (109)
228 2gi4_A Possible phosphotyrosin 26.0 66 0.0023 26.3 4.1 42 161-209 3-44 (156)
229 3d1n_I POU domain, class 6, tr 25.9 76 0.0026 25.8 4.5 34 110-144 105-138 (151)
230 1or7_A Sigma-24, RNA polymeras 25.7 44 0.0015 26.8 2.9 48 88-146 129-176 (194)
231 2da4_A Hypothetical protein DK 25.5 34 0.0012 24.7 2.0 46 82-144 12-57 (80)
232 3t72_q RNA polymerase sigma fa 25.3 71 0.0024 24.4 3.9 54 87-147 7-60 (99)
233 3ic4_A Glutaredoxin (GRX-1); s 24.8 67 0.0023 22.6 3.5 25 213-247 67-91 (92)
234 1rp3_A RNA polymerase sigma fa 24.6 43 0.0015 27.6 2.8 47 89-146 177-223 (239)
235 1j7q_A CAVP, calcium vector pr 24.5 1.7E+02 0.0058 19.9 5.6 43 83-141 6-48 (86)
236 2dt5_A AT-rich DNA-binding pro 24.1 1.7E+02 0.0057 25.2 6.6 64 109-189 14-77 (211)
237 2d5v_A Hepatocyte nuclear fact 23.9 88 0.003 25.6 4.5 35 110-145 109-143 (164)
238 4egs_A Ribose 5-phosphate isom 23.8 62 0.0021 27.2 3.6 38 161-207 36-73 (180)
239 1e3o_C Octamer-binding transcr 23.7 89 0.003 25.7 4.5 34 110-144 113-146 (160)
240 1zj8_A Probable ferredoxin-dep 23.6 68 0.0023 31.8 4.4 51 161-213 423-480 (566)
241 2xsd_C POU domain, class 3, tr 22.7 95 0.0032 25.8 4.5 35 109-144 110-144 (164)
242 1r7h_A NRDH-redoxin; thioredox 22.7 59 0.002 21.6 2.8 24 214-247 51-74 (75)
243 3gl5_A Putative DSBA oxidoredu 22.4 3.6E+02 0.012 22.9 13.4 96 106-253 116-215 (239)
244 2csb_A Topoisomerase V, TOP61; 22.1 43 0.0015 31.5 2.4 63 85-155 162-231 (519)
245 3l09_A Putative transcriptiona 22.1 1.1E+02 0.0038 27.6 5.2 104 89-203 9-116 (266)
246 3n8i_A Low molecular weight ph 22.0 75 0.0026 26.1 3.7 43 160-209 6-48 (157)
247 2jt1_A PEFI protein; solution 22.0 65 0.0022 23.7 3.0 34 110-145 7-43 (77)
248 2heo_A Z-DNA binding protein 1 21.3 72 0.0025 22.3 3.0 33 112-148 15-47 (67)
249 3omt_A Uncharacterized protein 21.0 67 0.0023 21.8 2.8 22 123-144 47-68 (73)
250 2ewt_A BLDD, putative DNA-bind 20.9 67 0.0023 21.4 2.7 23 122-144 48-70 (71)
251 1wi3_A DNA-binding protein SAT 20.6 1.4E+02 0.0049 22.1 4.5 34 109-143 19-52 (71)
252 2da7_A Zinc finger homeobox pr 20.6 1.4E+02 0.0048 22.1 4.5 35 109-144 16-50 (71)
253 3mzy_A RNA polymerase sigma-H 20.4 50 0.0017 25.3 2.2 47 88-146 97-144 (164)
254 3t76_A VANU, transcriptional r 20.1 63 0.0022 23.9 2.6 24 122-145 61-84 (88)
No 1
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=100.00 E-value=3.8e-51 Score=359.72 Aligned_cols=163 Identities=39% Similarity=0.736 Sum_probs=155.9
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccCCceE
Q 022828 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYH 162 (291)
Q Consensus 83 ~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~gK~~ 162 (291)
|.|++++.+++++||++||.++++++|||+||++|+++ ||||+++|++||+.|+||+++||||||||+||+++|+|||+
T Consensus 1 m~~~~~~~~~i~~ii~~y~~~~~~~~li~~L~~~Q~~~-G~l~~~~~~~iA~~l~l~~~~V~~VatFY~~f~~~P~gk~~ 79 (181)
T 3i9v_2 1 MGFFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEE-GWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYH 79 (181)
T ss_dssp --CTTTCHHHHHHHHTTSCTTCCGGGHHHHHHHHHHHH-SSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSSCCCSEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHh-CCCCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCCCCCCCEE
Confidence 46899999999999999997668999999999999987 99999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCCCCCCCCeEEEcccCCCCCCccce-EecCCChhh
Q 022828 163 LLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYN-YYEDVTPKR 241 (291)
Q Consensus 163 I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG~C~~aPvV~Vnd~~~G~~g~~~~-~Y~~vTpE~ 241 (291)
|+||+|++|+++||++|+++|+++|+++.|++|.||+|+|+.++|+|+|+.||+|+||+ + ||++||+|+
T Consensus 80 I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~----------~~~y~~vt~e~ 149 (181)
T 3i9v_2 80 LQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVND----------EPYVECVTRAR 149 (181)
T ss_dssp EEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSS----------SCCBCCCCHHH
T ss_pred EEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECC----------EEEEcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 7 999999999
Q ss_pred HHHHHHHHHcCCCCC
Q 022828 242 VIEIVEMLRRGEKLP 256 (291)
Q Consensus 242 V~~ILe~l~~G~~~~ 256 (291)
+++||+++++|+++.
T Consensus 150 v~~Il~~l~~g~~ve 164 (181)
T 3i9v_2 150 LEALLAGLRAGKRLE 164 (181)
T ss_dssp HHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCChh
Confidence 999999999998753
No 2
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.90 E-value=8.2e-25 Score=168.75 Aligned_cols=85 Identities=34% Similarity=0.681 Sum_probs=81.4
Q ss_pred cccCCceEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCCCCCCCCeEEEcccCCCCCCccceEe
Q 022828 155 RSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYY 234 (291)
Q Consensus 155 ~~P~gK~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG~C~~aPvV~Vnd~~~G~~g~~~~~Y 234 (291)
++|+||++|+||+|++|+++||++|+++|+++|+++.++||+||+|+|+.++|||.|+.||+|+|++ +||
T Consensus 1 ~~p~g~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~----------~~y 70 (85)
T 2auv_A 1 MVPKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGE----------KVY 70 (85)
T ss_dssp CCSCCSBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGG----------GCC
T ss_pred CCCCCCEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECC----------EEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999986 899
Q ss_pred cCCChhhHHHHHHHH
Q 022828 235 EDVTPKRVIEIVEML 249 (291)
Q Consensus 235 ~~vTpE~V~~ILe~l 249 (291)
++||++++++||+++
T Consensus 71 ~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 71 GNVTPGQVKKILAEY 85 (85)
T ss_dssp CCSSSSHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 999999999999863
No 3
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.77 E-value=3.6e-19 Score=143.45 Aligned_cols=87 Identities=30% Similarity=0.521 Sum_probs=75.3
Q ss_pred CceEEEEcCC--------CcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCCCCCCCCeEEEcccCCCCCCcc
Q 022828 159 GKYHLLVCGT--------TPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYT 230 (291)
Q Consensus 159 gK~~I~VC~g--------tsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG~C~~aPvV~Vnd~~~G~~g~~ 230 (291)
.||+|+||++ ++|+.+||++|+++|+++|+++.|.+ ++|+|+.++|||.|+.||+|+|++ +|
T Consensus 2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~---~~v~v~~~~ClG~C~~gP~v~V~P--~~----- 71 (110)
T 1m2d_A 2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLF---MTTVITPTGCMNASMMGPVVVVYP--DG----- 71 (110)
T ss_dssp -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHH---TTEEEEEESCCSCGGGCSCEEEET--TT-----
T ss_pred CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCC---CeEEEEECCCCCccCCCCEEEEEe--CC-----
Confidence 3789999999 89999999999999999998654543 679999999999999999999953 33
Q ss_pred ceEecCCChhhHHHHHHH-HHcCCCCC
Q 022828 231 YNYYEDVTPKRVIEIVEM-LRRGEKLP 256 (291)
Q Consensus 231 ~~~Y~~vTpE~V~~ILe~-l~~G~~~~ 256 (291)
+||++||++++++||++ +.+|+++.
T Consensus 72 -~~y~~vt~e~v~~il~~~l~~g~~v~ 97 (110)
T 1m2d_A 72 -VWYGQVKPEDVDEIVEKHLKGGEPVE 97 (110)
T ss_dssp -EEECSCCGGGHHHHHHHTTTTSCCCG
T ss_pred -EEEecCCHHHHHHHHHHHHHCCcChH
Confidence 89999999999999999 56676543
No 4
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=79.22 E-value=0.89 Score=36.69 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=31.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .++++.+ + || . -.|..||+..||+.. |||.+|..+.
T Consensus 16 ~r~~Il~aA~~lf~~-~-G~-~-~s~~~IA~~agvs~~------tlY~~F~sK~ 59 (194)
T 2q24_A 16 NRDKILAAAVRVFSE-E-GL-D-AHLERIAREAGVGSG------TLYRNFPTRE 59 (194)
T ss_dssp CHHHHHHHHHHHHHH-H-CT-T-CCHHHHHHHTTCCHH------HHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHh-c-Cc-C-CCHHHHHHHhCCChH------HHHHHcCCHH
Confidence 3455666 4555554 4 88 6 899999999999976 7888887644
No 5
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=74.78 E-value=1 Score=36.36 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .++++.+ + || . -.|+.||+..||+.. |||.+|..+.
T Consensus 19 ~~Il~aA~~lf~~-~-G~-~-~s~~~Ia~~agvs~~------t~Y~~F~sK~ 60 (199)
T 2rek_A 19 DRIIEAAAAEVAR-H-GA-D-ASLEEIARRAGVGSA------TLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHHH-H-GG-G-CCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHh-c-CC-C-CCHHHHHHHhCCchH------HHHHHCCCHH
Confidence 34554 4555554 4 89 4 699999999999976 8898997654
No 6
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=74.37 E-value=4.8 Score=29.67 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCCCCCChhhHHHHHHHHHhCCC-CCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccc
Q 022828 80 DLPWKFSDTNKEKVKEILSHYPS-NYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMF 153 (291)
Q Consensus 80 ~~~~~~~~~~~~~i~~il~~yp~-~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f 153 (291)
...++++.++.+.+..-+. .+- +..+....-|+..+- .. ||+..+ +..||+.++++..+|..|...-..|
T Consensus 5 ~~~~~~~~~e~ehL~~Ql~-~~~~~~~~~Ia~~iI~~LD-~~-GYL~~~-l~eia~~l~~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 5 PYQIPYTPSELEELQQNIK-LELEGKEQELALELLNYLN-EK-GFLSKS-VEEISDVLRCSVEELEKVRQKVLRL 75 (76)
T ss_dssp CSSSSCCHHHHHHHHHHHH-HHCCTTSHHHHHHHHHHCT-TS-STTCCC-HHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred hhhhccCCchHHHHHHHHc-ccCCHHHHHHHHHHHHhcC-CC-CCCCCC-HHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3455566655555655554 332 223333333555544 34 999875 5789999999999999887654433
No 7
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=72.95 E-value=5 Score=27.63 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-+.+|...-... .|.+.+....||+.+||+..+|.-
T Consensus 16 q~~~Le~~f~~~-~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 16 ARAFLEEVFRRK-QSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp HHHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHHHHHCcCHHHHHH
Confidence 345555555444 799999999999999999998753
No 8
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=69.91 E-value=6.8 Score=26.65 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. .|.+.+....||+.+|++..+|.
T Consensus 12 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 12 LLALERKFRQK-QYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHhh
Confidence 34444444343 78999999999999999999875
No 9
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=68.89 E-value=2.1 Score=34.73 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=29.8
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..||. .++++.+ + || .-.|..||+..||+.. |||.+|..+.
T Consensus 16 ~~Il~aA~~lf~~-~-G~--~~t~~~IA~~agvs~~------tlY~~F~sK~ 57 (196)
T 2qwt_A 16 ARVLEVAYDTFAA-E-GL--GVPMDEIARRAGVGAG------TVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHHHH-T-CT--TSCHHHHHHHTTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHh-c-CC--CCCHHHHHHHhCCCHH------HHHHHCCCHH
Confidence 34555 4555554 4 88 4799999999999976 7888887644
No 10
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=68.59 E-value=7.1 Score=26.86 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. .|.+.+....||+.||++..+|.
T Consensus 13 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 13 LGRLEKEFYKE-NYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHCcCHHHHH
Confidence 44454444444 78999999999999999999875
No 11
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=67.35 E-value=8.2 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. .|.+.+....+|+.+|++..+|.
T Consensus 9 l~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 9 VLELERRFLRQ-KYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHhCcCHHHhh
Confidence 44455444444 79999999999999999999875
No 12
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=67.25 E-value=3.3 Score=33.50 Aligned_cols=44 Identities=14% Similarity=0.402 Sum_probs=31.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 15 ~r~~Il~aA~~lf~~-~-G~-~~~s~~~Ia~~agvs~~------t~Y~yF~sKe 59 (203)
T 3ccy_A 15 IRDTIIERAAAMFAR-Q-GY-SETSIGDIARACECSKS------RLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHHHHHH-T-CT-TTSCHHHHHHHTTCCGG------GGTTTCSCHH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCcC------eeeeeeCCHH
Confidence 4555666 4555554 4 76 45678999999999976 8999997543
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.55 E-value=8.1 Score=27.41 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 30 KYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHee
Confidence 68899999999999999999875
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=66.40 E-value=8.5 Score=26.78 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-... .|.+.+....||+.|||+..+|.
T Consensus 15 ~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 15 LLELEKEFLFN-KYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcC-CCcCHHHHHHHHHHhCcCHHHhh
Confidence 34444444343 78999999999999999999875
No 15
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=66.39 E-value=3.3 Score=32.77 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=32.0
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.+..|+. .++++.+ + || ..-.++.||+..||+.. |||.+|..+.
T Consensus 12 ~r~~il~aa~~lf~~-~-G~-~~~tv~~Ia~~agvs~~------t~Y~~F~sK~ 56 (196)
T 3he0_A 12 KRDQILAAAEQLIAE-S-GF-QGLSMQKLANEAGVAAG------TIYRYFSDKE 56 (196)
T ss_dssp CHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTSCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCcc------hHHHhcCCHH
Confidence 5566666 5555554 4 75 56678999999999865 8999998654
No 16
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.30 E-value=8.8 Score=27.32 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccCCc
Q 022828 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGK 160 (291)
Q Consensus 83 ~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~gK 160 (291)
-.+|+++.+..++-|..|+.+ ++.|+++. |+--.+.+|+.||-++...+.++
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGKd---------f~~I~~~~-----------------v~~Kt~~~~v~fYY~wKkt~~~~ 61 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGKN---------FFRIRKEL-----------------LPNKETGELITFYYYWKKTSGPS 61 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCSC---------HHHHHHHS-----------------CTTSCHHHHHHHHHHHHCSSCCC
T ss_pred CCcCHHHHHHHHHHHHHhCcc---------HHHHHHHH-----------------cCCCcHHHHHHHHhcccCCCCCC
Confidence 358999999999999999963 56666432 45556677899998888877764
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=66.19 E-value=8.3 Score=27.29 Aligned_cols=23 Identities=0% Similarity=0.197 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 30 AYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCcCHHHHHHHHHHhCCCHHHhH
Confidence 68899999999999999999874
No 18
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=66.12 E-value=1.4 Score=36.95 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=29.9
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 45 r~~Il~aA~~l~~~-~-G~-~~~tv~~IA~~AGvs~~------t~Y~~F~sKe 88 (229)
T 3bni_A 45 LTRILDACADLLDE-V-GY-DALSTRAVALRADVPIG------SVYRFFGNKR 88 (229)
T ss_dssp HHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHh-c-Ch-hhccHHHHHHHHCCCch------hHHHHcCCHH
Confidence 345555 4455554 3 65 45568899999999866 8898998654
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=65.86 E-value=8.9 Score=26.43 Aligned_cols=34 Identities=6% Similarity=0.143 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. -|.+.+....||+.+|++..+|.
T Consensus 15 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 15 LARLKREFNEN-RYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHHH
Confidence 34454444444 78999999999999999999875
No 20
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=65.37 E-value=2.7 Score=33.12 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=30.8
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 10 ~r~~Il~aa~~l~~~-~-G~-~~~tv~~Ia~~agvs~~------t~Y~~F~sK~ 54 (195)
T 3ppb_A 10 KKQAILETALQLFVS-Q-GF-HGTSTATIAREAGVATG------TLFHHFPSKE 54 (195)
T ss_dssp HHHHHHHHHHHHHHH-T-CS-TTSCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCChh------HHHHHcCCHH
Confidence 4455666 4455554 4 76 45568999999999876 8898888654
No 21
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=64.99 E-value=9.3 Score=27.14 Aligned_cols=23 Identities=0% Similarity=0.131 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 30 KFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHhh
Confidence 68889999999999999999875
No 22
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=64.68 E-value=9.6 Score=26.18 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. -|.+.+....||+.+|++..+|.
T Consensus 11 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 11 LEELEKAFSRT-HYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHHHHCcCHHHHH
Confidence 34444443333 68999999999999999999875
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=64.22 E-value=9.7 Score=27.04 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 30 KYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCcCHHHHHHHHHHHCCCHHHhh
Confidence 68889999999999999999875
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=64.01 E-value=10 Score=26.26 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. -|++.+....||+.||++..+|.
T Consensus 15 ~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 15 LCALKDRFQKQ-KYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHhh
Confidence 34444444343 78999999999999999999874
No 25
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=63.65 E-value=2.8 Score=33.32 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=31.3
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+..+.+ + ||= -.|+.||+..||+.. |||.+|..+.
T Consensus 10 ~r~~Il~aA~~lf~~-~-G~~--~t~~~IA~~aGvs~~------tly~~F~sK~ 53 (190)
T 3jsj_A 10 PRERLLEAAAALTYR-D-GVG--IGVEALCKAAGVSKR------SMYQLFESKD 53 (190)
T ss_dssp HHHHHHHHHHHHHHH-H-CTT--CCHHHHHHHHTCCHH------HHHHHCSCHH
T ss_pred HHHHHHHHHHHHHHH-h-Ccc--ccHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4555666 4555554 4 776 789999999999876 7888887543
No 26
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=63.28 E-value=3.2 Score=33.13 Aligned_cols=44 Identities=11% Similarity=0.431 Sum_probs=30.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.+..||. .++.+.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 8 ~~~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~agvs~~------tlY~~F~sK~ 52 (192)
T 2zcm_A 8 MKDKIIDNAITLFSE-K-GY-DGTTLDDISKSVNIKKA------SLYYHYDNKE 52 (192)
T ss_dssp CHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHTTCCHH------HHHHHTCCHH
T ss_pred hHHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCChH------HHHHHCCCHH
Confidence 3445555 5555554 4 76 55678999999999976 7788887543
No 27
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=63.14 E-value=3.2 Score=32.91 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 125 PVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 125 p~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..-.|+.||+..||+.. |||.+|..+.
T Consensus 31 ~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 57 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRS------TVHRYYPERT 57 (190)
T ss_dssp TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred CCCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 77789999999999966 8999998654
No 28
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=62.98 E-value=3.4 Score=33.25 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=30.2
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 5 ~r~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 49 (185)
T 2yve_A 5 KKEMILRTAIDYIGE-Y-SL-ETLSYDSLAEATGLSKS------GLIYHFPSRH 49 (185)
T ss_dssp HHHHHHHHHHHHHHH-S-CS-TTCCHHHHHHHHCCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-c-Ch-hhccHHHHHHHhCCChH------HHHHhCcCHH
Confidence 3455666 4444544 4 76 45678999999999876 7888887643
No 29
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=62.74 E-value=4.4 Score=32.43 Aligned_cols=44 Identities=11% Similarity=0.310 Sum_probs=31.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.+..||. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..|.
T Consensus 8 tRe~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~~F~sKe 52 (178)
T 4hku_A 8 SQEIILNMAEKIIYE-K-GM-EKTTLYDIASNLNVTHA------ALYKHYRNKE 52 (178)
T ss_dssp CHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHTTSCGG------GGGGTCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccccHHHHHHHhCcCHh------HHHHHCCCHH
Confidence 3455665 5555554 3 76 55678999999999876 8999998653
No 30
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=62.71 E-value=3.3 Score=33.17 Aligned_cols=45 Identities=13% Similarity=0.349 Sum_probs=31.4
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccC
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKV 158 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~ 158 (291)
++..|+. .++++.+ . || ..-.|+.||+..||+.. |||.+|..+..
T Consensus 8 ~r~~Il~aA~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~~ 53 (195)
T 2dg7_A 8 AEQRLKRAALELYSE-H-GY-DNVTVTDIAERAGLTRR------SYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHHHHHH-S-CG-GGCCHHHHHHHTTCCHH------HHHHHCSSTTG
T ss_pred HHHHHHHHHHHHHHh-c-Cc-cccCHHHHHHHhCCCHH------HHHHHcCCHHH
Confidence 4455666 4444544 4 65 45568999999999866 89999987654
No 31
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=62.26 E-value=3.7 Score=32.98 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=31.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccC
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKV 158 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~ 158 (291)
.+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+..
T Consensus 18 ~r~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~~ 63 (207)
T 2rae_A 18 TQDRISTVGIELFTE-Q-GF-DATSVDEVAEASGIARR------TLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHHHHH-H-CT-TTSCHHHHHHHTTSCHH------HHHHHCSSTTT
T ss_pred HHHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCcc------hHhhhCCCHHH
Confidence 3444555 4555554 3 76 55668999999999865 89999987654
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=62.22 E-value=11 Score=26.42 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. .|.+.+....+|+.+|++..+|.
T Consensus 15 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 15 LHTLRTCYAAN-PRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcC-CCcCHHHHHHHHHHHCcCHHHHH
Confidence 34444444333 68999999999999999999875
No 33
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=62.18 E-value=8.5 Score=27.25 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 30 NSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHH
Confidence 57888889999999999999875
No 34
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=61.87 E-value=3.2 Score=34.91 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=30.5
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+. .+.++.+ + | .-.|..||+.+||+.+ |||.+|..+
T Consensus 12 ~r~~Il~aA~~l~~~-~-G---~~s~~~IA~~aGvs~~------tlY~hF~~K 53 (213)
T 2g7g_A 12 DRERIAEAALELVDR-D-G---DFRMPDLARHLNVQVS------SIYHHAKGR 53 (213)
T ss_dssp CHHHHHHHHHHHHHH-H-S---SCCHHHHHHHTTSCHH------HHHTTSCHH
T ss_pred CHHHHHHHHHHHHHH-c-C---CCCHHHHHHHhCCCHh------HHHHHcCCH
Confidence 4556666 4555554 4 7 7889999999999976 788888754
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=61.55 E-value=11 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-... .|.+.+....||..||++..+|.
T Consensus 14 ~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 14 VYELERRFKQQ-KYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp HHHHHHHHHHS-SSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHhH
Confidence 44454444444 79999999999999999999875
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=61.52 E-value=10 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...=+.. .|++.+....||..||++..+|.
T Consensus 14 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 14 VYELERRFKQQ-RYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp HHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCcCHHHHH
Confidence 34444443333 78999999999999999998864
No 37
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=61.48 E-value=5.5 Score=33.07 Aligned_cols=44 Identities=9% Similarity=0.283 Sum_probs=31.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 31 ~r~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~Agvs~~------t~Y~~F~sKe 75 (230)
T 2iai_A 31 TPETLLSVAVQVFIE-R-GY-DGTSMEHLSKAAGISKS------SIYHHVTGKE 75 (230)
T ss_dssp CCSCHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTSCHH------HHTTTCSSHH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-cccCHHHHHHHHCCChh------HHHHhCCCHH
Confidence 4555666 5566655 4 66 45678999999999866 8999997654
No 38
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.42 E-value=9.2 Score=27.17 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 30 QYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp SSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHH
Confidence 58888899999999999999875
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=61.33 E-value=9.6 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
+.+|...-+.. .|.+.+....||+.||++..+|.-
T Consensus 13 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~ 47 (67)
T 2k40_A 13 IEVLENVFRVN-CYPGIDILEDLAQKLNLELDRIQI 47 (67)
T ss_dssp HHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhhH
Confidence 34454444433 789999999999999999998753
No 40
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=61.17 E-value=11 Score=27.22 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 40 ~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 40 SNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp SSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHhH
Confidence 57888889999999999999864
No 41
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.20 E-value=12 Score=27.08 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 30 HNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp SSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHhh
Confidence 68999999999999999999874
No 42
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=60.06 E-value=3.5 Score=34.44 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.0
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 16 ~~Il~AA~~l~~~-~-G~-~~~tv~~IA~~agvs~~------t~Y~~F~sK 57 (231)
T 2qib_A 16 QQLIGVALDLFSR-R-SP-DEVSIDEIASAAGISRP------LVYHYFPGK 57 (231)
T ss_dssp HHHHHHHHHHHHH-S-CG-GGCCHHHHHHHHTSCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHH-c-Cc-hhcCHHHHHHHhCCCHH------HHHHHCCCH
Confidence 34555 4455554 4 76 56678999999999876 788888754
No 43
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=59.97 E-value=4.2 Score=31.83 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=29.0
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .+.++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 11 ~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 53 (188)
T 3qkx_A 11 EQIFSATDRLMAR-E-GL-NQLSMLKLAKEANVAAG------TIYLYFKNKD 53 (188)
T ss_dssp HHHHHHHHHHHHH-S-CS-TTCCHHHHHHHHTCCHH------HHHHHSSSHH
T ss_pred HHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCCcc------hHHHHcCCHH
Confidence 34555 4444443 4 76 45678999999999876 8898987543
No 44
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=59.93 E-value=4.2 Score=32.86 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=29.4
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 13 ~Il~aA~~lf~~-~-G~-~~~t~~~Ia~~Agvs~g------t~Y~yF~sKe 54 (204)
T 3anp_C 13 RIFRAAMELFRN-R-GF-QETTATEIAKAAHVSRG------TFFNYYPYKE 54 (204)
T ss_dssp HHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTSCHH------HHHHHCSSTH
T ss_pred HHHHHHHHHHHH-c-Cc-ccccHHHHHHHcCCchH------HHHHHcCCHH
Confidence 4554 4555554 3 76 45568999999999976 8999997654
No 45
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.68 E-value=12 Score=27.22 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|++.+....||+.|+|+..+|.
T Consensus 40 ~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 40 KYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp SSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHee
Confidence 58888899999999999999875
No 46
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=59.68 E-value=12 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|++.+....||+.|||+..+|.
T Consensus 36 ~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 36 MYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHHH
Confidence 68899999999999999999874
No 47
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=59.54 E-value=3.1 Score=32.55 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=29.3
Q ss_pred cccHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIPL-LDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alipi-L~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+.. ++++. .+ || ..-.|..||+..||+.. |||.+|..+.
T Consensus 6 r~~Il~aa~~l~~-~~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 49 (170)
T 3egq_A 6 SVRIIEAALRLYM-KK-PP-HEVSIEEIAREAKVSKS------LIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHHHHHT-TS-CG-GGCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-hc-CC-ccCcHHHHHHHhCCCch------hHHHHcCCHH
Confidence 3445553 34444 33 76 45678999999999865 8999997643
No 48
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=59.09 E-value=3.9 Score=32.61 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=29.7
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 15 ~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 57 (202)
T 3lwj_A 15 QKILTCSLDLFIE-K-GY-YNTSIRDIIALSEVGTG------TFYNYFVDKE 57 (202)
T ss_dssp HHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHCSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCch------hHHHHcCCHH
Confidence 34554 4555554 4 76 55678999999999865 8999998653
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=58.52 E-value=12 Score=26.04 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|.+.+....||+.+||+..+|.
T Consensus 29 ~yp~~~~r~~La~~~~L~~~qV~ 51 (64)
T 1du6_A 29 PYPSEEAKEELAKKCGITVSQVS 51 (64)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHHH
Confidence 78999999999999999999864
No 50
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=58.49 E-value=4.1 Score=32.66 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=29.8
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 20 r~~Il~aa~~l~~~-~-G~-~~~s~~~Ia~~agvs~~------t~Y~~F~sK~ 63 (212)
T 1pb6_A 20 KKAILSAALDTFSQ-F-GF-HGTRLEQIAELAGVSKT------NLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHTTSCHH------HHHHHSSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-chhhHHHHHHHHCCChh------HHHHhCCCHH
Confidence 344555 4444544 4 76 55668999999999976 7888887644
No 51
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=58.38 E-value=4.8 Score=32.01 Aligned_cols=43 Identities=12% Similarity=0.382 Sum_probs=30.3
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 18 r~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 61 (211)
T 3him_A 18 AARIRAAAIEVFAA-K-GY-GATTTREIAASLDMSPG------AVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHHHH-H-CS-TTCCHHHHHHHTTCCTT------SSTTTCSSHH
T ss_pred HHHHHHHHHHHHHH-c-CC-CcCCHHHHHHHhCCCcC------hhhhcCCCHH
Confidence 445555 4555554 4 76 45678999999999866 8999997554
No 52
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=58.16 E-value=3.7 Score=33.97 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=31.0
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 10 ~r~~Il~aA~~lf~~-~-Gy-~~ts~~~IA~~AGvskg------tlY~~F~sKe 54 (215)
T 1ui5_A 10 TRATIIGAAADLFDR-R-GY-ESTTLSEIVAHAGVTKG------ALYFHFAAKE 54 (215)
T ss_dssp HHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCch------hhHhhCCCHH
Confidence 3445555 4555554 4 77 56678999999999965 8898998644
No 53
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.91 E-value=14 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 30 RYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHhh
Confidence 68899999999999999999875
No 54
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=57.77 E-value=3.7 Score=33.47 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.2
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||++|..+.
T Consensus 14 r~~Il~aA~~l~~e-~-G~-~~~s~~~IA~~agvs~~------t~Y~hF~~Ke 57 (198)
T 3cjd_A 14 REKLIDLAEAQIEA-E-GL-ASLRARELARQADCAVG------AIYTHFQDLN 57 (198)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHh-C-Ch-hhcCHHHHHHHhCCCcc------HHHHHhCCHH
Confidence 334555 4455554 3 66 55678999999999976 8899998643
No 55
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=57.45 E-value=5.8 Score=31.25 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=31.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+..+.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 9 ~r~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 53 (183)
T 1zk8_A 9 TLQKIVETAAEIADA-N-GV-QEVTLASLAQTLGVRSP------SLYNHVKGLQ 53 (183)
T ss_dssp CHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCHH------HHTTTCSSHH
T ss_pred HHHHHHHHHHHHHHh-c-Cc-cccCHHHHHHHcCCCch------HHHHHcCCHH
Confidence 5566776 4455554 4 65 45678999999999976 8999998654
No 56
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=56.34 E-value=5.1 Score=32.15 Aligned_cols=43 Identities=16% Similarity=0.416 Sum_probs=30.6
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 33 r~~Il~aa~~l~~~-~-G~-~~~tv~~Ia~~agvs~~------t~Y~~F~sK~ 76 (218)
T 3dcf_A 33 RTQIIKVATELFRE-K-GY-YATSLDDIADRIGFTKP------AIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHHHHH-T-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCcHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 455665 4555554 3 66 45568899999999865 8999998654
No 57
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=56.05 E-value=16 Score=26.21 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|.+.+....||+.||++..+|.
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 30 KFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCcCHHHHHHHHHHHCCCHHHHH
Confidence 68888899999999999999875
No 58
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=55.97 E-value=16 Score=26.44 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|.+.+....||+.|||+..+|.
T Consensus 32 ~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 32 RYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp SCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHH
Confidence 68888899999999999999875
No 59
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=55.56 E-value=5.2 Score=32.37 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=31.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 8 ~r~~Il~aA~~lf~~-~-G~-~~ts~~~IA~~aGvs~g------tlY~~F~sKe 52 (197)
T 2gen_A 8 RKDEILQAALACFSE-H-GV-DATTIEMIRDRSGASIG------SLYHHFGNKE 52 (197)
T ss_dssp CHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHCCCHH------HHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHHCCChH------HHHHHCCCHH
Confidence 4455665 5566665 3 76 45678999999999876 8999997654
No 60
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=55.47 E-value=6.6 Score=32.04 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=31.4
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 12 ~r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvskg------tlY~~F~sKe 56 (219)
T 2w53_A 12 TREGILDAAEACFHE-H-GV-ARTTLEMIGARAGYTRG------AVYWHFKNKS 56 (219)
T ss_dssp CHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTSCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCch------HHhhcCCCHH
Confidence 4555666 5555554 4 76 45678999999999866 8899997644
No 61
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=55.25 E-value=14 Score=26.15 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 111 PLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 111 piL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.+|...-... .|.+.+....||..|||+..+|.
T Consensus 15 ~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 15 AELEQHFLQG-RYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp HHHHHHHTTC-SSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcC-CCcCHHHHHHHHHHhCcCHHHhh
Confidence 3444443333 68999999999999999999875
No 62
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=55.25 E-value=5.1 Score=32.02 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=30.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 16 r~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 59 (220)
T 3lhq_A 16 RQHILDVALRLFSQ-Q-GV-SATSLAEIANAAGVTRG------AIYWHFKNKS 59 (220)
T ss_dssp HHHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCce------eehhhcCCHH
Confidence 444555 5555554 4 76 44568899999999866 8898998654
No 63
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=55.24 E-value=4.5 Score=31.72 Aligned_cols=42 Identities=7% Similarity=0.240 Sum_probs=29.4
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .++++.+ + || ..-.++.||+..||+.. |||.+|..+.
T Consensus 11 ~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 53 (194)
T 2g7s_A 11 DDILQCARTLIIR-G-GY-NSFSYADISQVVGIRNA------SIHHHFPSKS 53 (194)
T ss_dssp HHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHCCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCch------HHHHHcCCHH
Confidence 34444 4445554 3 66 45578999999999866 8899998754
No 64
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=55.19 E-value=16 Score=26.64 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|++......||+.|||+..+|.
T Consensus 45 ~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 45 KYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 58888889999999999999874
No 65
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=55.09 E-value=5.2 Score=32.36 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=31.4
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccC
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKV 158 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~ 158 (291)
++..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+..
T Consensus 11 ~r~~Il~aA~~lf~~-~-G~-~~~s~~~Ia~~Agvskg------t~Y~yF~sKe~ 56 (197)
T 2f07_A 11 KYEKILQAAIEVISE-K-GL-DKASISDIVKKAGTAQG------TFYLYFSSKNA 56 (197)
T ss_dssp HHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTSCHH------HHHHHCSSSTT
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCch------HHHHhCCCHHH
Confidence 3445555 4555554 3 65 45568999999999876 89999987553
No 66
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=55.06 E-value=5.1 Score=31.77 Aligned_cols=42 Identities=14% Similarity=0.367 Sum_probs=28.8
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .+.++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 17 ~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 59 (203)
T 3f1b_A 17 QQMLDAAVDVFSD-R-GF-HETSMDAIAAKAEISKP------MLYLYYGSKD 59 (203)
T ss_dssp HHHHHHHHHHHHH-H-CT-TTCCHHHHHHHTTSCHH------HHHHHCCSHH
T ss_pred HHHHHHHHHHHHH-c-Cc-ccccHHHHHHHhCCchH------HHHHHhCCHH
Confidence 34555 4445554 3 66 44568899999999865 8898987543
No 67
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=54.89 E-value=3 Score=27.96 Aligned_cols=22 Identities=45% Similarity=0.841 Sum_probs=17.6
Q ss_pred CccccccccccccccccCCChhH
Q 022828 1 MCAVRTGEFVSPTGCVCGRGTKS 23 (291)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (291)
+||||.|.-+-- =|.|.||+.+
T Consensus 12 qCAvRkG~Rigk-lC~C~rg~~C 33 (41)
T 1hy9_A 12 QCAVRKGARIGK-LCDCPRGTSC 33 (41)
T ss_dssp CSEEECSSSEEE-CCBCCTTCCB
T ss_pred hhhhhcccccch-hcCCCCCCcc
Confidence 699999987653 4999999865
No 68
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.78 E-value=17 Score=25.76 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|++.+....||..|||+..+|.
T Consensus 32 ~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 32 HYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHH
Confidence 68999999999999999998864
No 69
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=54.75 E-value=14 Score=26.95 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|++.+....||+.|+|+..+|.
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 30 HYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHhh
Confidence 58888999999999999999875
No 70
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=54.75 E-value=5.1 Score=32.65 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=29.2
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 30 r~~Il~aa~~lf~~-~-G~-~~~tv~~IA~~agvs~~------t~Y~~F~sK 72 (215)
T 2qko_A 30 RAALVNAAIEVLAR-E-GA-RGLTFRAVDVEANVPKG------TASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHHHHH-T-CT-TTCCHHHHHHHSSSTTT------CHHHHCSCH
T ss_pred HHHHHHHHHHHHHH-h-Ch-hhccHHHHHHHcCCCcc------hHHHhCCCH
Confidence 344555 4445544 4 76 45678999999999876 788888754
No 71
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=54.72 E-value=6.6 Score=30.61 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=28.9
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .+.++. ++ || ..-.|..||+..||+.. |||.+|..+.
T Consensus 14 r~~Il~aa~~l~~-~~-G~-~~~tv~~Ia~~agvs~~------t~Y~~F~sK~ 57 (177)
T 3kkc_A 14 KVAIYNAFISLLQ-EN-DY-SKITVQDVIGLANVGRS------TFYSHYESKE 57 (177)
T ss_dssp HHHHHHHHHHHTT-TS-CT-TTCCHHHHHHHHCCCHH------HHTTTCSSTH
T ss_pred HHHHHHHHHHHHH-hC-Ch-hHhhHHHHHHHhCCcHh------hHHHHcCCHH
Confidence 334555 334444 33 64 45568899999999976 8999997653
No 72
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=54.67 E-value=4 Score=32.80 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=30.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .++++.+ . || ..-.++.||+..||+.. |||.+|..+.
T Consensus 10 ~r~~Il~aa~~l~~~-~-G~-~~~ti~~IA~~agvs~~------t~Y~~F~sK~ 54 (193)
T 2dg8_A 10 RRERILAATLDLIAE-E-GI-ARVSHRRIAQRAGVPLG------SMTYHFTGIE 54 (193)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCTH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Ch-hhccHHHHHHHhCCCch------hhheeCCCHH
Confidence 3455666 4555554 4 76 56678999999999977 7888887543
No 73
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=54.49 E-value=17 Score=26.49 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.|||+..+|.
T Consensus 41 ~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 41 QYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHHH
Confidence 68889999999999999999875
No 74
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.40 E-value=18 Score=26.17 Aligned_cols=24 Identities=0% Similarity=-0.069 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
.|++......||+.|+|+..+|.-
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV~~ 53 (75)
T 2da5_A 30 PLPLDEELDRLRSETKMTRREIDS 53 (75)
T ss_dssp SSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHhhH
Confidence 689999999999999999998753
No 75
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=54.11 E-value=14 Score=26.15 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. .|.+.+....||+.||++..+|.
T Consensus 14 ~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 14 TLELEKEFHFN-RYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp HHHHHHHHHHC-SSCCTTHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHccC-CCCCHHHHHHHHHHHCcCHhhhh
Confidence 33444443333 68999999999999999999875
No 76
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=54.10 E-value=4.6 Score=32.59 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=31.0
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 12 ~r~~Il~aA~~lf~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 56 (216)
T 3f0c_A 12 KLELIINAAQKRFAH-Y-GL-CKTTMNEIASDVGMGKA------SLYYYFPDKE 56 (216)
T ss_dssp HHHHHHHHHHHHHHH-H-CS-SSCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-c-CC-CcCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4555666 4555554 4 76 44467899999999866 8899998754
No 77
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=54.04 E-value=3.4 Score=32.68 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=30.2
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 9 ~r~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 53 (206)
T 3dew_A 9 CRSRLMEVATELFAQ-K-GF-YGVSIRELAQAAGASIS------MISYHFGGKE 53 (206)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHSCHHH
T ss_pred HHHHHHHHHHHHHhc-C-Cc-ccCcHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4555665 4455554 4 65 45568899999999866 7888887543
No 78
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=53.54 E-value=6.7 Score=31.62 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=30.0
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 14 r~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~~K~ 57 (189)
T 3vp5_A 14 RNRVYDACLNEFQT-H-SF-HEAKIMHIVKALDIPRG------SFYQYFEDLK 57 (189)
T ss_dssp HHHHHHHHHHHHHH-S-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-C-Cc-ccccHHHHHHHhCCChH------HHHHHCCCHH
Confidence 445555 4555554 4 77 34478999999999976 8888887553
No 79
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.36 E-value=15 Score=26.45 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-|.+.+....||+.|||+..+|.-
T Consensus 31 ~yp~~~~r~~La~~~~l~~~qV~~ 54 (76)
T 2dn0_A 31 QFPGQSEVEHLTKVTGLSTREVRK 54 (76)
T ss_dssp SSCCSHHHHHHHHHHCCCHHHHHH
T ss_pred CCcCHHHHHHHHHHhCCChHHhhH
Confidence 578888889999999999998753
No 80
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=53.26 E-value=6 Score=33.05 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=29.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNR 155 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~ 155 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..
T Consensus 9 r~~Il~aA~~l~~~-~-G~-~~~tv~~Ia~~agvs~~------t~y~~F~~ 50 (213)
T 3ni7_A 9 RDAIVDTAVELAAH-T-SW-EAVRLYDIAARLAVSLD------EIRLYFRE 50 (213)
T ss_dssp HHHHHHHHHHHHHH-S-CS-TTCCHHHHHHHTTSCHH------HHHHHCSS
T ss_pred HHHHHHHHHHHHHH-c-Cc-cccCHHHHHHHhCCCHH------HHHHHCCC
Confidence 445555 4555554 4 77 56678999999999866 78888864
No 81
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=53.19 E-value=3.2 Score=33.21 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=30.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 9 tr~~Il~AA~~l~~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 53 (195)
T 3frq_A 9 SDDEVLEAATVVLKR-C-GP-IEFTLSGVAKEVGLSRA------ALIQRFTNRD 53 (195)
T ss_dssp CHHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHHHHHCSHH
T ss_pred cHHHHHHHHHHHHHh-h-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4555666 4455554 3 66 44568899999999876 7898988654
No 82
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=53.11 E-value=45 Score=27.97 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhc-CCCCCHHHHHHHHHH-hCCCchhhhhhhhhhcccccccCCceEEEEcCCCcccccChHHHHHHH--H
Q 022828 109 VIPLLDLAQQQH-GGWLPVSAMNEVAKI-IEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDAL--L 184 (291)
Q Consensus 109 lipiL~~~Q~~~-~GyIp~eam~~IAe~-L~ip~~~V~~VaTFY~~f~~~P~gK~~I~VC~gtsC~~~Gs~~lleaL--~ 184 (291)
+...|...|... ..|.+.+.+..+|+. +|++..++.....= + .-.+.|.+.. .
T Consensus 100 ~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s-------~----------------~~~~~v~~~~~~a 156 (202)
T 3gha_A 100 FHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDK-------E----------------TFASQVEKDSDLN 156 (202)
T ss_dssp HHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHH-------T----------------TTHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhC-------h----------------HHHHHHHHHHHHH
Confidence 444454444321 147899999999999 99998876554320 0 1122232222 2
Q ss_pred HHhCCCCCcccCCCcEEEEEecCCCCCCCCCeEEEcccCCCCCCccceEe-cCCChhhHHHHHHHHHcCC
Q 022828 185 KHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYY-EDVTPKRVIEIVEMLRRGE 253 (291)
Q Consensus 185 ~~Lgi~~Gett~DG~ftL~~v~CLG~C~~aPvV~Vnd~~~G~~g~~~~~Y-~~vTpE~V~~ILe~l~~G~ 253 (291)
+.+|+. --|.+.||+ .++ +..+.+.+.++|++...++
T Consensus 157 ~~~gV~----------------------gtPtfvvnG----------~~~~G~~~~e~l~~~i~~~~~~~ 194 (202)
T 3gha_A 157 QKMNIQ----------------------ATPTIYVND----------KVIKNFADYDEIKETIEKELKGK 194 (202)
T ss_dssp HHTTCC----------------------SSCEEEETT----------EECSCTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCC----------------------cCCEEEECC----------EEecCCCCHHHHHHHHHHHHHhh
Confidence 344543 239999987 444 4579999999999876654
No 83
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=53.11 E-value=6.4 Score=31.03 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=30.0
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 4 r~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 47 (194)
T 3bqz_B 4 KDKILGVAKELFIK-N-GY-NATTTGEIVKLSESSKG------NLYYHFKTKE 47 (194)
T ss_dssp CHHHHHHHHHHHHH-H-TT-TTCCHHHHHHHTTCCHH------HHHHHTSSHH
T ss_pred HHHHHHHHHHHHHH-c-CC-ccCCHHHHHHHhCCCch------hHHHhCCCHH
Confidence 344555 4555554 3 65 45568999999999976 8898998654
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=53.03 E-value=18 Score=26.33 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=39.6
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccCCc
Q 022828 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGK 160 (291)
Q Consensus 83 ~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~gK 160 (291)
-.+|+++.+..++-|..|+.+ ++.|++.. ||--.+.+|+.||-++...+.++
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKd---------f~~I~~~~-----------------v~~Kt~~~~v~fYY~wKkt~~y~ 60 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKD---------FNDIRQDF-----------------LPWKSLTSIIEYYYMWKTTDRYV 60 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSC---------HHHHHHTT-----------------CSSSCHHHHHHHHHHHHTCCSSC
T ss_pred CCCCHHHHHHHHHHHHHhCcc---------HHHHHHHH-----------------cCCCCHHHHHHHHHhhcCCchHH
Confidence 358999999999999999963 56666421 34455778999998888887764
No 85
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=52.99 E-value=17 Score=25.88 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
+.+|...-+...-|.+.+....||+.|||+..+|.-
T Consensus 13 ~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (72)
T 1uhs_A 13 VEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48 (72)
T ss_dssp HHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 445554443212689999999999999999998753
No 86
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=52.97 E-value=6.8 Score=33.86 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=30.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+. .+.++.+ + || ..-.|..||+.+||+.+ |||.+|..+
T Consensus 20 tr~~Il~AA~~l~~e-~-G~-~~~S~~~IA~~aGvs~~------tlY~hF~sK 63 (243)
T 2g7l_A 20 SRRWIVDTAVALMRA-E-GL-EKVTMRRLAQELDTGPA------SLYVYVANT 63 (243)
T ss_dssp CHHHHHHHHHHHHHH-H-CS-SSCCHHHHHHHTTSCHH------HHTTTCCSH
T ss_pred CHHHHHHHHHHHHHh-c-Cc-hhcCHHHHHHHHCCChh------HHHHHcCCH
Confidence 4555666 4555554 4 66 55678999999999977 788888754
No 87
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=52.88 E-value=21 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....+|+.+|++..+|.
T Consensus 24 ~yp~~~~r~~La~~~gl~~~qV~ 46 (60)
T 1k61_A 24 PYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCcCHHHHHHHHHHHCcCHHHHH
Confidence 68999999999999999999874
No 88
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=52.39 E-value=5.8 Score=32.29 Aligned_cols=43 Identities=14% Similarity=0.477 Sum_probs=30.3
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..|.
T Consensus 13 r~~Il~aA~~lF~~-~-Gy-~~ts~~~IA~~aGvsk~------tlY~~F~sKe 56 (202)
T 2i10_A 13 DQVALQTAMELFWR-Q-GY-EGTSITDLTKALGINPP------SLYAAFGSKR 56 (202)
T ss_dssp CHHHHHHHHHHHHH-H-TT-TTCCHHHHHHHHTCCHH------HHHHHHCSHH
T ss_pred HHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCChH------HHHHHhCCHH
Confidence 444555 5666665 3 76 45678999999999976 7888886543
No 89
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=52.16 E-value=8.7 Score=30.16 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=28.7
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++.+.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 11 ~Il~aA~~l~~~-~-G~-~~~s~~~IA~~agvs~~------tly~~F~sK~ 52 (180)
T 2fd5_A 11 RILGAATQALLE-R-GA-VEPSVGEVMGAAGLTVG------GFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHHH-H-TT-TSCCHHHHHHHTTCCGG------GGGGTCSCHH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCcc------HHHHHCCCHH
Confidence 3444 4555554 3 76 34578999999999976 7888887543
No 90
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.75 E-value=21 Score=26.67 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|++.+..+.||+.+|++..+|-
T Consensus 26 ~YPs~~er~~LA~~tgLte~qIk 48 (76)
T 2ecc_A 26 QWARREDYQKLEQITGLPRPEII 48 (76)
T ss_dssp SSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHhh
Confidence 68999999999999999999874
No 91
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=51.66 E-value=7.8 Score=30.74 Aligned_cols=43 Identities=9% Similarity=0.288 Sum_probs=30.0
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + ||- .-.|..||+..||+.. |||.+|..+.
T Consensus 13 r~~Il~aA~~lf~~-~-G~~-~~s~~~Ia~~agvs~~------t~Y~~F~sK~ 56 (203)
T 3b81_A 13 RTELANKIWDIFIA-N-GYE-NTTLAFIINKLGISKG------ALYHYFSSKE 56 (203)
T ss_dssp HHHHHHHHHHHHHH-H-CST-TCCHHHHHHHHTCCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHHH-c-Ccc-cCcHHHHHHHhCCCch------hHHHHcCCHH
Confidence 334555 4455554 4 664 4568999999999976 8999998654
No 92
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=51.65 E-value=6.4 Score=30.83 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=29.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNR 155 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~ 155 (291)
++..|+. .++++.+ + || ..-.+..||+..||+.. |||.+|..
T Consensus 7 ~r~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~~ 49 (191)
T 1sgm_A 7 SREKILHTASRLSQL-Q-GY-HATGLNQIVKESGAPKG------SLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHCCCSC------HHHHSTTT
T ss_pred hHHHHHHHHHHHHHH-c-Cc-cccCHHHHHHHHCCCch------hHHHHccc
Confidence 3455666 4455554 4 65 44568899999999976 89999975
No 93
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.54 E-value=17 Score=25.65 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-... .|.+.+....||+.|||+..+|.
T Consensus 15 l~~Le~~F~~~-~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 15 LSLLKAYYALN-AQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp HHHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcC-CCcCHHHHHHHHHHhCcChhhcC
Confidence 44555444333 79999999999999999999875
No 94
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=51.50 E-value=8.5 Score=30.88 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=30.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 15 r~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~agvs~~------tlY~~F~sK~ 58 (217)
T 3nrg_A 15 RSRLIDVLLDEFAQ-N-DY-DSVSINRITERAGIAKG------SFYQYFADKK 58 (217)
T ss_dssp HHHHHHHHHHHHHH-S-CG-GGCCHHHHHHHHTCCTT------GGGGTCSSHH
T ss_pred HHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCcHH------HHHHHcCCHH
Confidence 445555 4445544 4 76 45678999999999876 8898998654
No 95
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=50.66 E-value=4.8 Score=33.42 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=26.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 36 ~r~~Il~AA~~lf~~-~-G~-~~~s~~~IA~~AGvs~~------tlY~~F~sKe 80 (237)
T 3kkd_A 36 RRQAILDAAMRLIVR-D-GV-RAVRHRAVAAEAQVPLS------ATTYYFKDID 80 (237)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCTT------TC-----CHH
T ss_pred HHHHHHHHHHHHHHh-c-Ch-hhcCHHHHHHHhCCChh------HHHHHcCCHH
Confidence 4455666 4555554 4 77 45568999999999876 8899998653
No 96
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=50.56 E-value=22 Score=25.69 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-+..|...-+.. .|++......+|+.||++..+|.-
T Consensus 15 ql~~LE~~F~~~-~yp~~~~r~~LA~~l~Lte~qVqv 50 (69)
T 2l9r_A 15 QVIELERKFSHQ-KYLSAPERAHLAKNLKLTETQVKI 50 (69)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHhCCChhheee
Confidence 345555544444 799999999999999999998753
No 97
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=50.44 E-value=4.5 Score=32.94 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.3
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + ||= -.|+.||+..||+.. |||.+|..+.
T Consensus 16 ~Il~aA~~lf~~-~-G~~--~s~~~IA~~agvs~~------tiY~~F~sK~ 56 (224)
T 1t33_A 16 QLIAAALAQFGE-Y-GLH--ATTRDIAALAGQNIA------AITYYFGSKE 56 (224)
T ss_dssp HHHHHHHHHHHH-H-GGG--SCHHHHHHHHTSCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHH-h-Ccc--ccHHHHHHHhCCCHH------HHHHhcCCHH
Confidence 3444 4555554 3 776 789999999999876 7888887654
No 98
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=50.43 E-value=5.7 Score=31.12 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=30.4
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 11 ~r~~Il~aa~~l~~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 55 (191)
T 3on4_A 11 TKERILAVAEALIQK-D-GY-NAFSFKDIATAINIKTA------SIHYHFPSKE 55 (191)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCcc------hhhhcCCCHH
Confidence 3455555 4445544 4 64 55568899999999866 8899998654
No 99
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=50.38 E-value=10 Score=32.38 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=30.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+. .+.++.+ + || ..-.|..||+.+||+.+ |||.+|..+
T Consensus 17 ~r~~Il~aA~~l~~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~hF~~K 60 (237)
T 2hxo_A 17 SRERIVGAAVELLDT-V-GE-RGLTFRALAERLATGPG------AIYWHITGK 60 (237)
T ss_dssp CHHHHHHHHHHHHHH-T-TT-TTCCHHHHHHHHTSCGG------GGGGTCCCH
T ss_pred CHHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHHCCChH------HHHHhcCCH
Confidence 4555666 4555554 4 65 55678999999999977 788888754
No 100
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=50.11 E-value=22 Score=25.89 Aligned_cols=48 Identities=17% Similarity=0.374 Sum_probs=33.5
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh
Q 022828 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV 146 (291)
Q Consensus 83 ~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V 146 (291)
|.+++++.++++++...|..+ .. |+|+.+-+..+-+.++++..++..+
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d---------------~d-G~I~~~el~~~l~~~g~~~~~~~~i 48 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPD---------------LN-GFIPGSAAKEFFTKSKLPILELSHI 48 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCS---------------TT-CEEEHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---------------CC-CcCcHHHHHHHHHHcCCCHHHHHHH
Confidence 567899999999999999752 12 7777777776666666655444443
No 101
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=50.06 E-value=21 Score=25.53 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
+.+|...-+...-|.+.+....||+.||++..+|.-
T Consensus 14 ~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~ 49 (73)
T 2hi3_A 14 VEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp HHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 344444433212689999999999999999998753
No 102
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=49.71 E-value=22 Score=25.98 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|.+......||+.|||+..+|.
T Consensus 43 ~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 43 HYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHH
Confidence 68999999999999999999874
No 103
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.62 E-value=5 Score=32.69 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=31.3
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .++++.+ + | ..-.|+.||+..||+.. |||.+|..+.
T Consensus 21 ~r~~Il~aA~~lf~~-~-G--~~~s~~~IA~~aGvs~~------tlY~~F~sK~ 64 (215)
T 2hku_A 21 TRDALFTAATELFLE-H-G--EGVPITQICAAAGAHPN------QVTYYYGSKE 64 (215)
T ss_dssp HHHHHHHHHHHHHHH-H-C--TTSCHHHHHHHHTCCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHH-h-C--CCcCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4555666 4455554 4 8 88899999999999876 7888887543
No 104
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.13 E-value=24 Score=25.06 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|++......||+.+|++..+|.
T Consensus 29 ~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 29 QFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp SSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHee
Confidence 68899999999999999998864
No 105
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=48.90 E-value=9.1 Score=30.64 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=29.4
Q ss_pred CcccHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIPL-LDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alipi-L~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
++..|+.. ++++. ++ || ..-.|+.||+..||+.. |||.+|..+
T Consensus 14 ~r~~Il~aa~~lf~-~~-G~-~~~tv~~Ia~~agvs~~------t~Y~~F~sK 57 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQ-SN-AY-HQISVSDIMQTAKIRRQ------TFYNYFQNQ 57 (195)
T ss_dssp HHHHHHHHHHHHHH-HS-CG-GGCCHHHHHHHHTSCGG------GGGGTCSSH
T ss_pred HHHHHHHHHHHHHH-hC-CC-CeeCHHHHHHHhCCCHH------HHHHHcCCH
Confidence 34556664 44444 34 65 44568999999999876 888888754
No 106
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=48.90 E-value=5.1 Score=32.64 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=29.7
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 15 ~~Il~aA~~lf~~-~-G~-~~ts~~~IA~~aGvsk~------tlY~~F~sKe 57 (211)
T 3bhq_A 15 REIIQAATAAFIS-K-GY-DGTSMEEIATKAGASKQ------TVYKHFTDKE 57 (211)
T ss_dssp HHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHHHHHCSHH
T ss_pred HHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 34444 5555655 3 76 46679999999999876 7888887643
No 107
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=48.50 E-value=6.4 Score=32.49 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=28.6
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 32 ~Il~AA~~lf~~-~-G~-~~~t~~~IA~~aGvs~~------tlY~~F~sK~ 73 (217)
T 3hta_A 32 RIIDAAIRVVGQ-K-GI-AGLSHRTVAAEADVPLG------STTYHFATLD 73 (217)
T ss_dssp HHHHHHHHHHHH-H-TG-GGCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-c-Cc-ccCCHHHHHHHcCCCcc------hhhhcCCCHH
Confidence 3444 4455554 3 76 55668999999999866 7888887543
No 108
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=48.15 E-value=9.7 Score=31.91 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=30.5
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..||. .+.++.+ + || ..-.|..||+.+||+.. |||.+|..+
T Consensus 26 tr~~Il~aA~~l~~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~~F~~K 69 (211)
T 3fiw_A 26 NRETVITEALDLLDE-V-GL-DGVSTRRLAKRLGVEQP------SLYWYFRTK 69 (211)
T ss_dssp CHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCTH------HHHTTCSSH
T ss_pred CHHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCChh------HHHHHcCCH
Confidence 5666776 4445544 4 65 44568999999999976 788888653
No 109
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=47.79 E-value=6.2 Score=31.96 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=29.9
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 5 r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~Agvs~~------t~Y~~F~sK~ 48 (212)
T 3rh2_A 5 RDKIIQASLELFNE-H-GE-RTITTNHIAAHLDISPG------NLYYHFRNKE 48 (212)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHCCCHH
Confidence 445555 4455554 3 65 45678999999999866 8888887643
No 110
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=47.76 E-value=14 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhh
Q 022828 82 PWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRV 143 (291)
Q Consensus 82 ~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V 143 (291)
+|.++++++++++++...|..+ .. |+|+.+-+..+-+.++++..++
T Consensus 1 ~w~ls~~~~~~~~~~F~~~D~d---------------~d-G~I~~~el~~~l~~~g~~~~~~ 46 (95)
T 1c07_A 1 TWVVSPAEKAKYDEIFLKTDKD---------------MD-GFVSGLEVREIFLKTGLPSTLL 46 (95)
T ss_dssp CCSSCSHHHHHHHHHHHHHCTT---------------CS-SEECHHHHHHHHHTTTCCHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCC---------------CC-CcEeHHHHHHHHHHcCCCHHHH
Confidence 4678889999999999999742 12 7777777666655555544433
No 111
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=47.30 E-value=9.6 Score=30.89 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
|| ..-.+..||+..||+.. |||.+|..+.
T Consensus 29 G~-~~~ti~~Ia~~Agvs~~------t~Y~~F~sK~ 57 (220)
T 3lsj_A 29 GF-GSLSLREVTRAAGIVPA------GFYRHFSDMD 57 (220)
T ss_dssp CG-GGCCHHHHHHHHTSCGG------GGTTTCSSHH
T ss_pred Cc-ccCCHHHHHHHhCCChh------HHHHHcCCHH
Confidence 55 45568899999999876 8999998643
No 112
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=46.72 E-value=8.8 Score=30.22 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=29.3
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 10 ~~Il~aa~~l~~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 52 (199)
T 3qbm_A 10 ERVVAQAAALFNV-S-GY-AGTAISDIMAATGLEKG------GIYRHFESKE 52 (199)
T ss_dssp HHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHH-h-Cc-CcCCHHHHHHHhCCCcc------HHHHhCCCHH
Confidence 34554 4555554 3 64 45568999999999866 8999998654
No 113
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=46.64 E-value=25 Score=25.68 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRV 143 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V 143 (291)
+..|...=.+. -|++.+....||+.+|++..+|
T Consensus 16 l~~LE~~F~~~-~YPs~~er~eLA~~tgLt~~qV 48 (66)
T 3nau_A 16 IAHLKASFLQS-QFPDDAEVYRLIEVTGLARSEI 48 (66)
T ss_dssp HHHHHHHHHGG-GSCCHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHhCcCHHHh
Confidence 44444433333 6999999999999999999987
No 114
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=46.51 E-value=21 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 111 PLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 111 piL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.+|...-+.. .|++.+....||+.|+|+..+|.
T Consensus 47 ~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 47 TELEKEFHFN-KYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp HHHHHHHTTC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhH
Confidence 3444333333 68999999999999999999874
No 115
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=46.23 E-value=9.2 Score=30.23 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=29.5
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 13 r~~Il~aA~~lf~~-~-G~-~~~ti~~IA~~agvs~~------t~Y~~F~sK~ 56 (204)
T 3eup_A 13 RQFIIESTAPVFNV-K-GL-AGTSLTDLTEATNLTKG------SIYGNFENKE 56 (204)
T ss_dssp HHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHTTTSSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCcH------HHHHhCCCHH
Confidence 344555 4455554 3 54 34568999999999865 8999998654
No 116
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=46.18 E-value=10 Score=33.37 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=29.6
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .+.++.+ + || ..-.|..||+.+||+.+ |||.+|..+
T Consensus 29 r~~Il~AA~~L~~e-~-G~-~~~Smr~IA~~aGVs~~------tlY~hF~~K 71 (267)
T 2y2z_A 29 RDQIVRAAVKVADT-E-GV-EAASMRRVAAELGAGTM------SLYYYVPTK 71 (267)
T ss_dssp HHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCHH------HHHTTCCSH
T ss_pred HHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCH
Confidence 444555 5555554 3 65 55679999999999976 788888754
No 117
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=46.09 E-value=9 Score=29.99 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=30.0
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 11 ~r~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 55 (196)
T 3col_A 11 KQVKIQDAVAAIILA-E-GP-AGVSTTKVAKRVGIAQS------NVYLYFKNKQ 55 (196)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCcHH------HHHHHhCCHH
Confidence 3445555 4455554 3 65 44567899999999865 8898888654
No 118
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=45.89 E-value=23 Score=26.25 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|++......||+.|||+..+|.
T Consensus 51 ~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 51 RYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp SSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHhh
Confidence 68899999999999999999875
No 119
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=45.73 E-value=7.5 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=29.0
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 6 ~Il~aA~~lf~~-~-Gy-~~~s~~~Ia~~agvskg------tlY~~F~sKe 47 (179)
T 2eh3_A 6 RILEVSKELFFE-K-GY-QGTSVEEIVKRANLSKG------AFYFHFKSKE 47 (179)
T ss_dssp HHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-c-CC-ccCCHHHHHHHhCCCcH------HHHHHcCCHH
Confidence 3444 5556665 3 66 35568999999999976 8898987543
No 120
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=45.04 E-value=7.8 Score=31.07 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=28.9
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 14 r~~Il~aA~~lf~e-~-G~-~~~t~~~IA~~agvsk~------tlY~~F~sK 56 (192)
T 2fq4_A 14 QKAILSASYELLLE-S-GF-KAVTVDKIAERAKVSKA------TIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccccHHHHHHHcCCCHH------HHHHHCCCH
Confidence 334555 4555555 3 66 45568999999999976 788888654
No 121
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=44.74 E-value=24 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-|.+.+....||+.+||+..+|.-
T Consensus 27 ~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 27 PYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHH
Confidence 689999999999999999998654
No 122
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=44.51 E-value=25 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-|.+.+....||+.+||+..+|.-
T Consensus 27 ~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 27 PYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCcCHHHHHHHHHHHCcCHHHHHH
Confidence 689999999999999999998753
No 123
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=44.50 E-value=9.9 Score=30.34 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=29.3
Q ss_pred CcccHHHH-HHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIPL-LDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alipi-L~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+.. ++.+-.++ || ..-.|..||+..||+.. |||.+|..+.
T Consensus 25 ~r~~Il~aA~~~lf~~~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 70 (212)
T 3nxc_A 25 RREEILQSLALMLESSD-GS-QRITTAKLAASVGVSEA------ALYRHFPSKT 70 (212)
T ss_dssp THHHHHHHHHHHHHC--------CCHHHHHHHTTSCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHhcC-Ch-hhcCHHHHHHHhCCChh------HHHHHCCCHH
Confidence 56677776 56452333 65 44568899999999976 8999998654
No 124
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=44.43 E-value=35 Score=27.46 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCch
Q 022828 74 SPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPI 141 (291)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~ 141 (291)
++......+|.++++++++++++...+.. . . |+|+-+.+..+=..+++|..
T Consensus 16 ~~~~g~~~~W~it~ee~~~y~~iF~~lD~---~-------------d-G~Isg~elr~~~~~sgLp~~ 66 (121)
T 3fia_A 16 TPFGGSLDTWAITVEERAKHDQQFHSLKP---I-------------S-GFITGDQARNFFFQSGLPQP 66 (121)
T ss_dssp CTTSCCTTTSCCCHHHHHHHHHHHHHTCC---B-------------T-TBEEHHHHHHHHGGGCCCHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCC---C-------------C-CeECHHHHHHHHHHcCCCHH
Confidence 44444445799999999999999999963 1 2 67776665555444444433
No 125
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=44.28 E-value=8.3 Score=30.28 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=26.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 13 ~r~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 57 (199)
T 3on2_A 13 LRRVLLARAESTLEK-D-GV-DGLSLRQLAREAGVSHA------APSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHTC-----------CCCSSSSHH
T ss_pred HHHHHHHHHHHHHHh-c-Ch-hhhhHHHHHHHhCCChH------HHHHHhCCHH
Confidence 3445665 4555554 3 65 44568899999999876 8999998654
No 126
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=43.87 E-value=9.5 Score=32.87 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=29.8
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+. .+.++.+ + || ..-.|..||+.+||+.+ |||.+|..+
T Consensus 7 tr~~Il~AA~~l~~~-~-G~-~~~S~r~IA~~aGvs~~------tlY~hF~~K 50 (234)
T 2opt_A 7 TQDRIVVTALGILDA-E-GL-DALSMRRLAQELKTGHA------SLYAHVGNR 50 (234)
T ss_dssp CHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHHCSH
T ss_pred CHHHHHHHHHHHHHh-C-Cc-cccCHHHHHHHHCCChh------HHHHHcCCH
Confidence 4555665 4555554 3 65 56678999999999987 677777654
No 127
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.84 E-value=30 Score=25.86 Aligned_cols=24 Identities=0% Similarity=0.068 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
.|.+......||+.|+|+..+|.-
T Consensus 36 ~yp~~~~r~~La~~~~l~~~qV~v 59 (89)
T 2dmp_A 36 SFPTQAELDRLRVETKLSRREIDS 59 (89)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHhccH
Confidence 688999999999999999998753
No 128
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=43.69 E-value=11 Score=26.66 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 111 PLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 111 piL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.+|...-+.. .|.+.+....||+.|||+..+|.
T Consensus 16 ~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 16 QQLEATFQRN-RYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp HHHHHHHTTC-SSCCTTTTTHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHHH
Confidence 3444333333 67888888999999999999875
No 129
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=43.64 E-value=8.3 Score=30.16 Aligned_cols=41 Identities=20% Similarity=0.479 Sum_probs=28.3
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 12 ~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 53 (195)
T 3pas_A 12 AFLEATVREVAD-H-GF-SATSVGKIAKAAGLSPA------TLYIYYEDKE 53 (195)
T ss_dssp HHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-c-Ch-HhcCHHHHHHHhCCCch------HHHHHcCCHH
Confidence 4444 4455554 3 55 34568999999999865 8999998654
No 130
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.48 E-value=10 Score=30.61 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=29.1
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 16 ~Il~aA~~lf~~-~-Gy-~~ts~~~IA~~agvs~g------tlY~yF~sKe 57 (205)
T 1rkt_A 16 EILEAAKTVFKR-K-GF-ELTTMKDVVEESGFSRG------GVYLYFSSTE 57 (205)
T ss_dssp HHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTSCHH------HHHTTCSCHH
T ss_pred HHHHHHHHHHHH-c-Cc-ccCCHHHHHHHHCCCcc------hhhhhCCCHH
Confidence 3444 5555554 3 76 45668999999999876 8999997543
No 131
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=43.21 E-value=41 Score=24.12 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 108 AVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 108 alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.=+++|...-....-|++.+....||+.|+++..+|.
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 3466666555222369999999999999999999875
No 132
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.15 E-value=16 Score=26.85 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh
Q 022828 88 TNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV 146 (291)
Q Consensus 88 ~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V 146 (291)
+....+.+.|.+.|. +..-+-.|+.++ |+ ...+||+.|||+...|...
T Consensus 26 ~~~~~l~~~l~~L~~---~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~ 73 (92)
T 3hug_A 26 LDRLLIADALAQLSA---EHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSR 73 (92)
T ss_dssp HHHHHHHHHHHTSCH---HHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHH
Confidence 445678888999885 222333344332 44 5789999999999988753
No 133
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=43.05 E-value=11 Score=30.40 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=28.7
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 15 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~agvs~~------t~Y~~F~sK~ 56 (212)
T 2ras_A 15 RLVDVAQAIVEE-R-GG-AGLTLSELAARAGISQA------NLSRYFETRE 56 (212)
T ss_dssp HHHHHHHHHHHH-H-TS-SCCCHHHHHHHHTSCHH------HHTTTCSSHH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCcHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 3444 4555554 3 66 34568899999999976 8899997654
No 134
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=43.03 E-value=8.8 Score=30.43 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 112 LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 112 iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 29 A~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~~K~ 65 (203)
T 3mnl_A 29 TMAIASK-G-GY-EAVQMRAVADRADVAVG------TLYRYFPSKV 65 (203)
T ss_dssp HHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHH-c-CC-ccCCHHHHHHHcCCChh------HHHHHcCCHH
Confidence 4444544 3 54 44568899999999876 8898987643
No 135
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=42.70 E-value=11 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=30.9
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccC
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKV 158 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~ 158 (291)
++..|+. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+..
T Consensus 11 ~r~~Il~aa~~lf~~-~-G~-~~~t~~~IA~~agvs~~------tlY~~F~sK~~ 56 (197)
T 3rd3_A 11 TRQHLLDTGYRIMAV-K-GF-SGVGLNEILQSAGVPKG------SFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHTTTCSCHHH
T ss_pred HHHHHHHHHHHHHHH-C-Cc-ccCCHHHHHHHhCCChh------hHHHHcCCHHH
Confidence 4555666 4445544 4 65 44568899999999865 89999986543
No 136
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=42.53 E-value=12 Score=29.59 Aligned_cols=41 Identities=20% Similarity=0.496 Sum_probs=28.1
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 7 ~Il~aa~~l~~~-~-G~-~~~ti~~IA~~agvs~~------t~Y~~F~sK~ 48 (189)
T 3geu_A 7 KIIDNAITLFSE-K-GY-DGTTLDDIAKSVNIKKA------SLYYHFDSKK 48 (189)
T ss_dssp HHHHHHHHHHHH-H-HH-HHCCHHHHHHHTTCCHH------HHTTTCSSHH
T ss_pred HHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHhCCHH
Confidence 3444 4444444 3 43 45568999999999865 8999998654
No 137
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=42.26 E-value=22 Score=25.69 Aligned_cols=34 Identities=6% Similarity=0.044 Sum_probs=26.6
Q ss_pred HHHHHHHH-HhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQ-QQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q-~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...- +.. .|.+.+....||+.||++..+|.
T Consensus 20 l~~LE~~F~~~~-~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 20 NDTLEKVFVSVT-KYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp TTHHHHHHHHTC-SSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcC-CCcCHHHHHHHHHHhCCChhhcc
Confidence 45555444 333 79999999999999999999875
No 138
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=41.80 E-value=9.3 Score=30.84 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=29.5
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 18 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~agvs~~------tlY~~F~sKe 59 (204)
T 2ibd_A 18 ELLDIAATLFAE-R-GL-RATTVRDIADAAGILSG------SLYHHFDSKE 59 (204)
T ss_dssp HHHHHHHHHHHH-H-CS-TTCCHHHHHHHTTSCHH------HHHHHCSCHH
T ss_pred HHHHHHHHHHHH-c-Cc-hhcCHHHHHHHhCCCch------hHHHhcCCHH
Confidence 3444 5556655 3 65 45678999999999975 8999998654
No 139
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=41.64 E-value=29 Score=26.53 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=30.7
Q ss_pred CCCCCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCch
Q 022828 79 PDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPI 141 (291)
Q Consensus 79 ~~~~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~ 141 (291)
...+|.++++++++++++...+.. .. |+|+.+-+..+=..++++..
T Consensus 3 ~~~~w~ls~~e~~~~~~~F~~~D~----------------~d-G~Is~~el~~~l~~~gl~~~ 48 (106)
T 1eh2_A 3 WGSPWAVKPEDKAKYDAIFDSLSP----------------VN-GFLSGDKVKPVLLNSKLPVD 48 (106)
T ss_dssp ---CCSSCHHHHHHHHHHHTTSCC----------------SS-SCCBHHHHHHHHHTTTCCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC----------------CC-CeEcHHHHHHHHHHcCCCHH
Confidence 345788999999999999988862 12 78887766666544444433
No 140
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=41.36 E-value=12 Score=30.37 Aligned_cols=42 Identities=7% Similarity=0.193 Sum_probs=29.1
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..||. .++++.+ + ||- .-.|+.||+..||+.. |||.+|..+.
T Consensus 17 ~~Il~aA~~lf~~-~-G~~-~~s~~~IA~~agvsk~------tlY~yF~sKe 59 (199)
T 3crj_A 17 EEIMQATYRALRE-H-GYA-DLTIQRIADEYGKSTA------AVHYYYDTKD 59 (199)
T ss_dssp HHHHHHHHHHHHH-H-TTT-TCCHHHHHHHHTSCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHHH-c-Ccc-cCCHHHHHHHhCCChh------HHhhhcCCHH
Confidence 34444 4455554 3 663 5568899999999976 8899997654
No 141
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=41.34 E-value=9.9 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=29.6
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 14 ~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvskg------tlY~~F~sKe 56 (210)
T 2xdn_A 14 AQIIEAAERAFYK-R-GV-ARTTLADIAELAGVTRG------AIYWHFNNKA 56 (210)
T ss_dssp HHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCTT------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-c-Cc-ccCcHHHHHHHHCCChH------HHHHHhCCHH
Confidence 34554 4555655 3 65 45668999999999976 8898987644
No 142
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=41.12 E-value=9.7 Score=30.50 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=29.3
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 11 ~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~agvs~~------tlY~~F~sK~ 53 (199)
T 2o7t_A 11 EHIITTTCNLYRT-H-HH-DSLTMENIAEQAGVGVA------TLYRNFPDRF 53 (199)
T ss_dssp HHHHHHHHHHHHH-S-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-C-CC-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 34554 4555554 3 66 34578999999999976 8899997654
No 143
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=40.98 E-value=9.6 Score=30.82 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=29.2
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 14 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~~------t~Y~~F~sKe 55 (210)
T 3vib_A 14 HLMLAALETFYR-K-GI-ARTSLNEIAQAAGVTRD------ALYWHFKNKE 55 (210)
T ss_dssp HHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCCHHHHHHHHCcCHH------HHHHHCCCHH
Confidence 4444 5556665 3 76 44568999999999865 8898988653
No 144
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=40.93 E-value=13 Score=30.80 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=28.6
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 20 ~il~aA~~l~~~-~-G~-~~~s~~~IA~~agvs~~------t~Y~~F~~K~ 61 (216)
T 2oi8_A 20 EIKDHAWEQIAT-A-GA-SALSLNAIAKRMGMSGP------ALYRYFDGRD 61 (216)
T ss_dssp HHHHHHHHHHHH-H-CT-TSCCHHHHHHHTTCCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 3444 4445554 3 65 45568899999999976 7898998654
No 145
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.64 E-value=39 Score=23.88 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.+|++..+|.
T Consensus 33 ~yp~~~~r~~La~~~~L~~~qV~ 55 (73)
T 1x2n_A 33 PYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp CCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHHH
Confidence 68999999999999999999875
No 146
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=40.61 E-value=9.8 Score=30.02 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=28.3
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 21 ~Il~aa~~l~~~-~-G~-~~~s~~~Ia~~agvs~~------t~Y~~F~sK~ 62 (206)
T 3kz9_A 21 QLMEIALEVFAR-R-GI-GRGGHADIAEIAQVSVA------TVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHHH-S-CC-SSCCHHHHHHHHTSCHH------HHHHHCCSHH
T ss_pred HHHHHHHHHHHh-c-Cc-ccccHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 3444 4445554 3 65 44568899999999866 8898998654
No 147
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=40.46 E-value=8.8 Score=30.52 Aligned_cols=43 Identities=12% Similarity=0.409 Sum_probs=29.6
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 5 r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~agvsk~------t~Y~~F~sK~ 48 (190)
T 3vpr_A 5 RDRILEEAAKLFTE-K-GY-EATSVQDLAQALGLSKA------ALYHHFGSKE 48 (190)
T ss_dssp HHHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 334454 5556655 3 65 34568899999999876 8898997553
No 148
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=40.45 E-value=8.8 Score=30.28 Aligned_cols=44 Identities=7% Similarity=0.203 Sum_probs=30.1
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 15 ~r~~Il~aA~~l~~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 59 (191)
T 4aci_A 15 SRQEILEGARRCFAE-H-GY-EGATVRRLEEATGKSRG------AIFHHFGDKE 59 (191)
T ss_dssp HHHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHHCCCch------HHHHHCCCHH
Confidence 3445555 4455554 3 54 45568899999999976 8898998654
No 149
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=40.44 E-value=15 Score=30.90 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=28.1
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 50 ~Il~aA~~lf~~-~-G~-~~~t~~~IA~~aGvs~~------t~Y~~F~sKe 91 (245)
T 3aqt_A 50 RLITSARTLMAE-R-GV-DNVGIAEITEGANIGTG------TFYNYFPDRE 91 (245)
T ss_dssp HHHHHHHHHHHH-H-CG-GGCCHHHHHHHTTSCGG------GGGGTCSSHH
T ss_pred HHHHHHHHHHHh-c-Cc-ccCcHHHHHHHhCCChH------HHHHHcCCHH
Confidence 3444 4455554 3 65 34568899999999876 7888887644
No 150
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=40.15 E-value=27 Score=25.82 Aligned_cols=23 Identities=9% Similarity=-0.150 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|++.+...+||+.|+|+..+|.
T Consensus 44 ~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 44 QKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCcCccc
Confidence 36778888899999999999764
No 151
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=40.15 E-value=10 Score=31.72 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=28.3
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .+.++.+ + || ..-.|..||+.+||+++ |||.+|..+
T Consensus 5 r~~Il~aA~~l~~~-~-G~-~~~s~~~IA~~~Gvs~~------slY~hF~~K 47 (207)
T 2xpw_A 5 RESVIDAALELLNE-T-GI-DGLTTRKLAQKLGIEQP------TLYWHVKNK 47 (207)
T ss_dssp HHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHHHHCCCH
T ss_pred HHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCCcc------hHHHhcCCH
Confidence 344554 4555554 3 53 45579999999999977 778777654
No 152
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=40.13 E-value=12 Score=32.45 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.1
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 43 r~~Il~AA~~lf~e-~-G~-~~~S~~~IA~~AGVs~~------tlY~hF~sK 85 (273)
T 3c07_A 43 RALILETAMRLFQE-R-GY-DRTTMRAIAQEAGVSVG------NAYYYFAGK 85 (273)
T ss_dssp HHHHHHHHHHHHHH-T-CS-TTCCHHHHHHHHTSCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHh-C-Cc-cccCHHHHHHHHCCCHH------HHHHHcCCH
Confidence 334555 4555554 3 76 45578999999999976 788888654
No 153
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=40.13 E-value=10 Score=29.94 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=28.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .++++.+ + || ..-.++.||+..||+.. |||.+|..+
T Consensus 19 r~~Il~aa~~lf~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK 61 (208)
T 3cwr_A 19 RESIVGAAQRLLSS-G-GA-AAMTMEGVASEAGIAKK------TLYRFASGR 61 (208)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHH-c-CH-HhccHHHHHHHhCCCHH------HHHHHcCCH
Confidence 334444 4455554 3 65 45568899999999866 788888764
No 154
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=39.87 E-value=10 Score=31.77 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=28.0
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
..|+. .+..+.+ + || ..-.|..||+.+||+.+ |||.+|..+
T Consensus 5 ~~Il~aA~~l~~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~hf~~K 46 (209)
T 3bqy_A 5 ARTVQTALDLLNE-S-GL-DTLTMRRLAQAMDVQAG------ALYRYFAAK 46 (209)
T ss_dssp HHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHh-C-Cc-ccCCHHHHHHHhCCCcc------hHHhhcCCH
Confidence 34454 4555554 3 54 45678999999999977 778777654
No 155
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=39.65 E-value=11 Score=30.05 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=28.7
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 16 r~~Il~aa~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 59 (215)
T 3e7q_A 16 KALLIEATLACLKR-H-GF-QGASVRKICAEAGVSVG------LINHHYDGKD 59 (215)
T ss_dssp HHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 334444 4444444 3 54 45568899999999865 8898998654
No 156
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.64 E-value=11 Score=30.64 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=29.8
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..||. .++++.+ + || ..-.|+.||+..||+.. |||++|..|
T Consensus 11 r~~Il~AA~~lf~~-~-G~-~~~s~~~IA~~AGvs~g------tlY~~F~sK 53 (203)
T 2np5_A 11 PERLAAALFDVAAE-S-GL-EGASVREVAKRAGVSIG------AVQHHFSTK 53 (203)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHH-h-Ch-hhccHHHHHHHhCCCHH------HHHHHcCCH
Confidence 444555 5555554 3 66 46679999999999976 788888654
No 157
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=39.61 E-value=11 Score=30.55 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=27.8
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 27 ~Il~aA~~lf~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 68 (214)
T 2zb9_A 27 EVLHAVGELLLT-E-GT-AQLTFERVARVSGVSKT------TLYKWWPSKG 68 (214)
T ss_dssp HHHHHHHHHHHH-H-CG-GGCCHHHHHHHHCCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCCHHHHHHHHCCCHH------HHHHHCCCHH
Confidence 3444 4555554 3 66 34468899999999976 7888887543
No 158
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=39.57 E-value=9.5 Score=30.66 Aligned_cols=41 Identities=12% Similarity=0.329 Sum_probs=29.1
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 16 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~~F~sKe 57 (197)
T 2hyt_A 16 TLLATARKVFSE-R-GY-ADTSMDDLTAQASLTRG------ALYHHFGDKK 57 (197)
T ss_dssp HHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCTT------HHHHHHSSHH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4444 4555554 3 76 45668999999999976 8888887544
No 159
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=39.56 E-value=11 Score=30.15 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=29.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 16 r~~Il~aa~~l~~~-~-G~-~~~ti~~IA~~agvs~~------t~Y~~F~sK~ 59 (212)
T 3knw_A 16 RQHILDSGFHLVLR-K-GF-VGVGLQEILKTSGVPKG------SFYHYFESKE 59 (212)
T ss_dssp HHHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-CC-ccCCHHHHHHHhCCChH------HHHHHCCCHH
Confidence 344555 4445554 3 65 34568899999999866 8898998654
No 160
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.44 E-value=40 Score=25.65 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|++.+....||+.||++..+|.
T Consensus 34 ~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 34 SVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp SSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcChHHCe
Confidence 69999999999999999999875
No 161
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.38 E-value=30 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHhC---------------CCchhhh
Q 022828 122 GWLPVSAMNEVAKIIE---------------VAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~---------------ip~~~V~ 144 (291)
-|.+.+..+.||+.|+ |+..+|.
T Consensus 30 ~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~ 67 (95)
T 2cuf_A 30 QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 67 (95)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHH
Confidence 6889999999999999 8888765
No 162
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=38.91 E-value=32 Score=25.85 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....||+.||++..+|.
T Consensus 40 ~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 40 KYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp SCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCcCHHHHHHHHHHhCCChhhcc
Confidence 57888899999999999999875
No 163
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=38.83 E-value=42 Score=23.70 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-|.+.+....+|+.+|++..+|.
T Consensus 24 pyp~~~~r~~La~~~~l~~~qV~ 46 (67)
T 3k2a_A 24 PYPSEEQKKQLAQDTGLTILQVN 46 (67)
T ss_dssp CCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHhh
Confidence 79999999999999999999864
No 164
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=38.69 E-value=41 Score=24.66 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=30.7
Q ss_pred CCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 82 PWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 82 ~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
...|+.+.+..++....+..- . . -|++.+...+||+.|+|++.+|.
T Consensus 21 Rt~ft~~Ql~~Le~~f~~~~~---------------~-~-~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 21 RTKFTAEQKERMLALAERIGW---------------R-I-QRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp SCCCCHHHHHHHHHHHHHHTS---------------C-C-CTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CccCCHHHHHHHHHHHHhccC---------------c-C-CCcCHHHHHHHHHHhCCCccccc
Confidence 345777777766665544100 0 1 36777888899999999998764
No 165
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=38.55 E-value=13 Score=31.05 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=29.8
Q ss_pred CcccHHH-HHHHHHHhcC-CCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHG-GWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~-GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+. .+.++.+ . || ..-.|..||+.+||+.. |||.+|..+
T Consensus 6 tr~~Il~aA~~l~~~--~~G~-~~~s~~~IA~~aGvs~~------tlY~~F~sK 50 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEK--SPTL-EQLSMRKVAKQLGVQAP------AIYWYFKNK 50 (220)
T ss_dssp SHHHHHHHHHHHHHH--SCCG-GGCCHHHHHHHHTSCHH------HHHTTCSSH
T ss_pred hHHHHHHHHHHHHHh--cCCc-ccCCHHHHHHHcCCCHH------HHHHhcCCH
Confidence 4455555 4455544 3 54 45678999999999977 788888764
No 166
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.47 E-value=17 Score=22.28 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCchhhhhhhhhh
Q 022828 128 AMNEVAKIIEVAPIRVYEVATFY 150 (291)
Q Consensus 128 am~~IAe~L~ip~~~V~~VaTFY 150 (291)
...+||+.|||+...|+-...-|
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CHHHHHHHHCcCHHHHHHHHhhH
Confidence 37789999999999888776544
No 167
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=38.29 E-value=13 Score=28.96 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=28.5
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
..|+. .++++.+ + || ..-.+..||+..||+.. |||.+|..+
T Consensus 17 ~~Il~aa~~lf~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK 58 (156)
T 3ljl_A 17 QKIMDAVVDQLLR-L-GY-DKMSYTTLSQQTGVSRT------GISHHFPKK 58 (156)
T ss_dssp HHHHHHHHHHHHH-T-HH-HHCCHHHHHHHHTCCHH------HHHHHCSST
T ss_pred HHHHHHHHHHHHH-h-Ch-hhcCHHHHHHHHCCCHH------HHHHHCCCH
Confidence 34554 4444543 3 65 44568999999999876 899999865
No 168
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=37.99 E-value=11 Score=25.74 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh
Q 022828 86 SDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV 146 (291)
Q Consensus 86 ~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V 146 (291)
..+....+.+.++..|+ +..-+-.|+.++ |+ ...+||+.+|++...|+..
T Consensus 2 ~~e~~~~l~~~l~~L~~---~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 2 GFEDLVEVTTMIADLTT---DQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp CHHHHHHHHTTTTSSCH---HHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCH---HHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHH
Confidence 34666778888888874 222222222221 43 5689999999999988753
No 169
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=37.96 E-value=12 Score=30.25 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=29.9
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 32 r~~Il~aA~~l~~~-~-G~-~~~t~~~IA~~aGvs~~------t~Y~~F~sK~ 75 (222)
T 3bru_A 32 HQSLIRAGLEHLTE-K-GY-SSVGVDEILKAARVPKG------SFYHYFRNKA 75 (222)
T ss_dssp HHHHHHHHHHHHHH-S-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-CC-CcCcHHHHHHHhCCCcc------hhhhhCCCHH
Confidence 344555 4455554 4 75 45568999999999866 8999998654
No 170
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=37.91 E-value=14 Score=29.73 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=28.5
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 12 ~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvsk~------tlY~~F~sK 53 (203)
T 3cdl_A 12 ESIVQAAIAEFGD-R-GF-EITSMDRIAARAEVSKR------TVYNHFPSK 53 (203)
T ss_dssp HHHHHHHHHHHHH-H-CT-TTCCHHHHHHHTTSCHH------HHHTTSSSH
T ss_pred HHHHHHHHHHHHH-c-Cc-hhcCHHHHHHHhCCCHH------HHHHHCCCH
Confidence 33444 5555554 3 66 35568999999999976 788888754
No 171
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=37.90 E-value=12 Score=29.84 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=28.1
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+
T Consensus 22 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~~F~sK 62 (212)
T 3loc_A 22 AILSAALDTFSQ-F-GF-HGTRLEQIAELAGVSKT------NLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTSCHH------HHHHHSSSH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCCHHHHHHHHCcCHH------HHhhhCCCH
Confidence 3444 4555554 3 54 44568999999999866 889999865
No 172
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=37.77 E-value=14 Score=30.88 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=29.4
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+. .+.++.+ + || ..-.|..||+.+||+.+ |||.+|..+
T Consensus 5 tr~~Il~aA~~l~~~-~-G~-~~~s~~~IA~~agvs~~------tlY~~f~~K 48 (207)
T 2vpr_A 5 DKEQVIDNALILLNE-V-GI-EGLTTRKLAQKIGVEQP------TLYWHVKNK 48 (207)
T ss_dssp CHHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCHH------HHTTTCCSH
T ss_pred cHHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCChh------HHHHHcCCH
Confidence 3445555 4455544 3 54 45679999999999977 778888754
No 173
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=37.74 E-value=13 Score=26.65 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=28.9
Q ss_pred cCCCCCCCCCCCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhh
Q 022828 72 LDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRV 143 (291)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V 143 (291)
...+.......-.++++.++.++++...|..+ . . |+|+.+-+..+-..+|++..++
T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~d--~-------------~-G~I~~~El~~~l~~~g~~~~~~ 63 (91)
T 2pmy_A 8 SSGRENLYFQGADGDGEELARLRSVFAACDAN--R-------------S-GRLEREEFRALCTELRVRPADA 63 (91)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHCTT--C-------------S-SSEEHHHHHHHHHHTTCCHHHH
T ss_pred CCCCccHHHHhccCCHHHHHHHHHHHHHHCCC--C-------------C-CCCcHHHHHHHHHHcCcCHHHH
Confidence 34444444445668889999999999999753 1 1 5555555555555555444433
No 174
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=37.61 E-value=45 Score=24.38 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-|.+.+....+|..+|++..+|.-
T Consensus 28 ~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 28 PYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcCHHHHHHHHHHHCCCHHHccc
Confidence 689999999999999999998653
No 175
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=37.54 E-value=12 Score=30.07 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=30.3
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .++++.+ + || ..-.|+.||+..||+.. |||++|..|.
T Consensus 12 r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~g------tlY~yF~sKe 55 (194)
T 2nx4_A 12 RRSITAAAWRLIAA-R-GI-EAANMRDIATEAGYTNG------ALSHYFAGKD 55 (194)
T ss_dssp HHHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCCcc------hHHHhCcCHH
Confidence 334554 5666665 3 65 45568999999999976 8899997644
No 176
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=37.51 E-value=49 Score=24.68 Aligned_cols=45 Identities=11% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCch
Q 022828 81 LPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPI 141 (291)
Q Consensus 81 ~~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~ 141 (291)
.+.+++++..++++++...|..+ .. |+|+.+-+..+-+.+|...+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d---------------~~-G~I~~~El~~~l~~lg~~~~ 70 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRD---------------GN-GFISKQELGTAMRSLGYMPN 70 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSS---------------CS-SCBCHHHHHHHHHHHTCCCC
T ss_pred ccccCCHHHHHHHHHHHHHHcCC---------------CC-CcCCHHHHHHHHHHhCCCCC
Confidence 36779999999999999999752 23 88888888888888876543
No 177
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=37.34 E-value=10 Score=29.81 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=26.4
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+
T Consensus 11 ~Il~aa~~l~~~-~-G~-~~~t~~~IA~~agvs~~------tlY~~F~sK 51 (186)
T 2jj7_A 11 NILKAAKKKFGE-R-GY-EGTSIQEIAKEAKVNVA------MASYYFNGK 51 (186)
T ss_dssp HHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTSCHH------HHHHHHSSH
T ss_pred HHHHHHHHHHHH-c-CC-ccCCHHHHHHHhCCChh------hhhhhcCCH
Confidence 3444 4444544 3 54 34568999999999876 777777654
No 178
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=37.30 E-value=1.7e+02 Score=23.91 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh-CCCchhhhhh
Q 022828 112 LLDLAQQQHGGWLPVSAMNEVAKII-EVAPIRVYEV 146 (291)
Q Consensus 112 iL~~~Q~~~~GyIp~eam~~IAe~L-~ip~~~V~~V 146 (291)
+.+.++++..++.+.+.+..+|+.+ |++..++...
T Consensus 95 lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~ 130 (193)
T 3hz8_A 95 IFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAA 130 (193)
T ss_dssp HHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 3334443333678999999999999 9998876553
No 179
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=37.03 E-value=12 Score=30.45 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=30.1
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 10 r~~Il~aA~~lf~~-~-Gy-~~~s~~~IA~~AGvs~g------t~Y~yF~sKe 53 (206)
T 1vi0_A 10 YMQIIDAAVEVIAE-N-GY-HQSQVSKIAKQAGVADG------TIYLYFKNKE 53 (206)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCChh------HHHHHcCCHH
Confidence 445555 4555554 3 66 34568899999999976 8899997654
No 180
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=36.65 E-value=45 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.|++......||..|+|+..+|.
T Consensus 48 ~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 48 QWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp SSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHee
Confidence 68999999999999999998864
No 181
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=36.62 E-value=15 Score=30.85 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=28.7
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .+.++.+ + || ..-.|..||+.+||+.. |||.+|..+
T Consensus 5 r~~Il~aA~~l~~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~~F~~K 47 (202)
T 4ac0_A 5 KSKVINSALELLNE-V-GI-EGLTTRKLAQKLGVEQP------TLYWHVKNK 47 (202)
T ss_dssp HHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTSCHH------HHHTTCSSH
T ss_pred HHHHHHHHHHHHHh-c-Cc-ccCCHHHHHHHhCCCch------hHHhhcCCH
Confidence 444555 4455554 3 54 44568999999999876 788888754
No 182
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=36.59 E-value=13 Score=30.44 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=29.0
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 24 r~~Il~AA~~lf~e-~-G~-~~~s~~~IA~~AGVsk~------tlY~~F~sK 66 (207)
T 3bjb_A 24 HVRMLEAAIELATE-K-EL-ARVQMHEVAKRAGVAIG------TLYRYFPSK 66 (207)
T ss_dssp HHHHHHHHHHHHHH-S-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHCCCH
Confidence 334555 4455554 4 76 44578999999999976 788888754
No 183
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=36.47 E-value=14 Score=31.31 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=28.0
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 52 ~Il~AA~~lf~e-~-G~-~~~Ti~~IA~~AGvs~~------t~Y~yF~sKe 93 (260)
T 2of7_A 52 AIRAATYGLIRQ-Q-GY-EATTVEQIAERAEVSPS------TVLRYFPTRE 93 (260)
T ss_dssp HHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-h-Cc-ccccHHHHHHHhCCChH------HHHHHcCCHH
Confidence 3444 4555554 3 65 44568899999999876 7888887543
No 184
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=36.39 E-value=13 Score=29.69 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=28.4
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 23 ~Il~aA~~lf~~-~-G~-~~~t~~~IA~~agvs~~------tlY~~F~sK~ 64 (216)
T 3qqa_A 23 KIKAVALELFLT-K-GY-QETSLSDIIKLSGGSYS------NIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHHH-T-CT-TTCCHHHHHHHHTTSCC------SSSCSCCSHH
T ss_pred HHHHHHHHHHHH-c-Ch-hhCCHHHHHHHhCCCHH------HHHHhcCCHH
Confidence 3444 4455554 3 65 44568999999999876 8899997654
No 185
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=36.35 E-value=12 Score=30.28 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=28.9
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
+..||. .++++.+ + ||= .-.|+.||+..||+.. |||.+|..+
T Consensus 13 r~~Il~aA~~lf~~-~-G~~-~~s~~~IA~~aGvskg------tlY~~F~sK 55 (210)
T 2wui_A 13 RDGILDAAERVFLE-K-GVG-TTAMADLADAAGVSRG------AVYGHYKNK 55 (210)
T ss_dssp HHHHHHHHHHHHHH-S-CTT-TCCHHHHHHHHTSCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHH-c-Ccc-ccCHHHHHHHhCCCHH------HHHHHcCCH
Confidence 334554 5555554 3 764 5568999999999976 778888753
No 186
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=36.28 E-value=13 Score=30.40 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=24.9
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 28 ~Il~aA~~lf~e-~-G~-~~~s~~~IA~~aGvskg------tlY~yF~sKe 69 (214)
T 2oer_A 28 SILEAAVQVLAS-E-GA-QRFTTARVAERAGVSIG------SLYQYFPNKA 69 (214)
T ss_dssp HHHHHHHHC---------CCCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHh-h-Cc-ccccHHHHHHHhCCCCc------hHHHhCCCHH
Confidence 3444 4444443 3 66 34568999999999965 8899997654
No 187
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=36.17 E-value=16 Score=29.54 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=28.9
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .++++.+ + || ..-.|+.||+..||+.. |||++|..|.
T Consensus 16 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvsk~------tlY~hF~sKe 57 (200)
T 2hyj_A 16 RILGRAAEIASE-E-GL-DGITIGRLAEELEMSKS------GVHKHFGTKE 57 (200)
T ss_dssp HHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHTTCSSHH
T ss_pred HHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCChH------HHHHHcCCHH
Confidence 3444 5555655 3 66 45678999999999976 7888886543
No 188
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=35.92 E-value=15 Score=30.65 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=27.5
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNR 155 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~ 155 (291)
..||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..
T Consensus 10 ~~Il~AA~~lF~e-~-G~-~~ts~~~IA~~AGvs~~------tlY~hF~s 50 (235)
T 2fbq_A 10 ERILDAAEQLFAE-K-GF-AETSLRLITSKAGVNLA------AVNYHFGS 50 (235)
T ss_dssp HHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTSCHH------HHHHHTCS
T ss_pred HHHHHHHHHHHHH-c-Cc-cccCHHHHHHHhCCCHH------HHHHHcCC
Confidence 34554 4555554 3 76 45678999999999876 67777754
No 189
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=35.88 E-value=13 Score=29.29 Aligned_cols=42 Identities=12% Similarity=0.359 Sum_probs=28.9
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..|+. .++.+.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 11 ~~Il~aA~~l~~~-~-G~-~~~t~~~IA~~Agvs~~------tly~~F~sK~ 53 (194)
T 3dpj_A 11 DQIVAAADELFYR-Q-GF-AQTSFVDISAAVGISRG------NFYYHFKTKD 53 (194)
T ss_dssp HHHHHHHHHHHHH-H-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHHCCChH------HHHHHcCCHH
Confidence 34444 4555554 3 65 45568899999999865 8899997553
No 190
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=35.84 E-value=13 Score=29.66 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=27.9
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+. .+.++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 30 ~Il~aA~~l~~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 71 (217)
T 3mvp_A 30 KILQVAKDLFSD-K-TY-FNVTTNEIAKKADVSVG------TLYAYFASKE 71 (217)
T ss_dssp HHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHH-c-Cc-cccCHHHHHHHhCCChh------HHHHHcCCHH
Confidence 3444 4455554 3 65 44568899999999866 8899997643
No 191
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=35.80 E-value=12 Score=29.86 Aligned_cols=44 Identities=5% Similarity=0.047 Sum_probs=29.5
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 17 ~r~~Il~aa~~lf~~-~-G~-~~~t~~~Ia~~agvs~~------t~Y~~F~sK~ 61 (213)
T 2qtq_A 17 ARDLLLQTASNIMRE-G-DV-VDISLSELSLRSGLNSA------LVKYYFGNKA 61 (213)
T ss_dssp HHHHHHHHHHHHHHH-H-TS-SCCCHHHHHHHHCCCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-ccccHHHHHHHhCCChh------hHhHhcCCHH
Confidence 3444555 4445554 4 66 33458899999999865 8898998654
No 192
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=35.55 E-value=12 Score=30.10 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=27.9
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.||. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 21 ~Il~aA~~l~~~-~-G~-~~~t~~~IA~~agvs~~------t~Y~~F~sK~ 62 (218)
T 3gzi_A 21 KLILAARNLFIE-R-PY-AQVSIREIASLAGTDPG------LIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHHHT-S-CC-SCCCHHHHHHHHTSCTH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHH-C-CC-CcCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 4444 4445543 3 66 34568899999999876 7888886543
No 193
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=35.55 E-value=11 Score=30.10 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=30.2
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 11 ~r~~Il~aa~~l~~~-~-G~-~~~ti~~Ia~~agvs~~------t~Y~~F~sK~ 55 (216)
T 3s5r_A 11 TRELLLDAATTLFAE-Q-GI-AATTMAEIAASVGVNPA------MIHYYFKTRD 55 (216)
T ss_dssp HHHHHHHHHHHHHHH-H-CT-TTCCHHHHHHTTTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHHCCCHH------HHHHHcCCHH
Confidence 4555666 4455554 4 65 34568899999999865 8899997654
No 194
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=35.36 E-value=12 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=29.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 17 r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~agvs~~------t~Y~~F~sKe 60 (221)
T 3c2b_A 17 QNAVLDQALRLLVE-G-GE-KALTTSGLARAANCSKE------SLYKWFGDRD 60 (221)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHh-C-Cc-ccCCHHHHHHHhCCCHH------HHHHhCCCHH
Confidence 444555 4555554 3 65 45678999999999976 7888887643
No 195
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=35.31 E-value=13 Score=30.33 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=29.8
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
++..|+. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 6 tr~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~Agvs~~------t~Y~~F~sK 49 (228)
T 3nnr_A 6 TRDKILLSSLELFND-K-GE-RNITTNHIAAHLAISPG------NLYYHFRNK 49 (228)
T ss_dssp HHHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHHH-h-Ch-hhcCHHHHHHHhCCCCc------cchhcCCCH
Confidence 3445555 4445554 4 65 45568899999999866 889888765
No 196
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=35.21 E-value=12 Score=30.12 Aligned_cols=43 Identities=16% Similarity=0.358 Sum_probs=29.6
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.|+.||+..||+.. |||++|..+.
T Consensus 7 r~~Il~aA~~lf~~-~-Gy-~~~s~~~IA~~Agvskg------tlY~yF~sKe 50 (202)
T 2id6_A 7 RDAILKAAVEVFGK-K-GY-DRATTDEIAEKAGVAKG------LIFHYFKNKE 50 (202)
T ss_dssp HHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTCCTH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 444555 4455554 3 65 35568999999999976 8898997543
No 197
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.96 E-value=12 Score=30.65 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=27.1
Q ss_pred cHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 108 AVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 108 alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.||. .++++.+ + || ..-.|+.||+..||+.. |||.+|..+
T Consensus 7 ~Il~aA~~lf~~-~-G~-~~~s~~~IA~~AGvskg------tlY~hF~sK 47 (208)
T 2g3b_A 7 AILKASATAIAQ-R-GI-RGLRVNDVAEVAGVSPG------LLYYHFKDR 47 (208)
T ss_dssp HHHHHHHHHHHH-H-HH-HHCCHHHHHHHHTSCHH------HHHHHHCSH
T ss_pred HHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCHH------HHHHHCCCH
Confidence 3444 4445554 3 65 45568999999999976 778787654
No 198
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=34.94 E-value=49 Score=25.06 Aligned_cols=39 Identities=10% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 022828 80 DLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAK 134 (291)
Q Consensus 80 ~~~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe 134 (291)
...|.++++++++++++...|..+ .. |+|+.+-+..+-.
T Consensus 3 ~~~w~ls~~~~~~l~~~F~~~D~d---------------~d-G~I~~~El~~~l~ 41 (111)
T 2kgr_A 3 VAEWAVPQSSRLKYRQLFNSHDKT---------------MS-GHLTGPQARTILM 41 (111)
T ss_dssp SCCSSSCHHHHHHHHHHHHTTSCS---------------SC-CEEEHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---------------CC-CcCcHHHHHHHHH
Confidence 457889999999999999999742 12 7777776665543
No 199
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=34.69 E-value=53 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=34.4
Q ss_pred CCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 82 PWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 82 ~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
...|+.+....++..+..+-. . -|.+.+....||+.+|++..+|.
T Consensus 31 r~~ft~~q~~~Le~~f~~~~~-----------------~-~yP~~~~r~~La~~~gL~~~qV~ 75 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAKNIE-----------------N-PYLDTKGLENLMKNTSLSRIQIK 75 (87)
T ss_dssp TCCCCHHHHHHHHHHHHHTTS-----------------S-CCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----------------C-CCcCHHHHHHHHHHHCcCHHHHH
Confidence 456888887777777666421 2 57888899999999999999875
No 200
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=34.39 E-value=12 Score=30.28 Aligned_cols=43 Identities=9% Similarity=0.219 Sum_probs=7.1
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ + || ..-.+..||+..||+.. |||.+|..+.
T Consensus 32 r~~Il~aa~~l~~~-~-G~-~~~ti~~IA~~agvs~~------t~Y~~F~sK~ 75 (212)
T 2np3_A 32 REAILTAARVCFAE-R-GF-DATSLRRIAETAGVDQS------LVHHFYGTKE 75 (212)
T ss_dssp ---CHHHHHHHC------------------------------------CCC-C
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccccHHHHHHHcCCCHH------HHHHHhCCHH
Confidence 444555 5555554 3 54 55678999999999876 8999997654
No 201
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=32.93 E-value=15 Score=30.16 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=29.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
++..||. .++++.+ + || ..-.|..||+..||+.. |||.+|..+
T Consensus 31 ~r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~~------tlY~~F~sK 74 (226)
T 2pz9_A 31 TRQRIVAAAKEEFAR-H-GI-AGARVDRIAKQARTSKE------RVYAYFRSK 74 (226)
T ss_dssp CHHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHTTSCHH------HHHHHCSSH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCcHHHHHHHHCCChH------HHHHHcCCH
Confidence 4555666 4555554 3 65 35578999999999976 788888654
No 202
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=32.86 E-value=15 Score=31.49 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=29.3
Q ss_pred CcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
.+..|+..-..+-..+ || ..-.|..||+.+||+.. |||.+|..+
T Consensus 30 tr~~Il~aA~~l~~~~-G~-~~~s~~~IA~~aGvs~~------tlY~hF~~K 73 (241)
T 2hxi_A 30 STEQILDAAAELLLAG-DA-ETFSVRKLAASLGTDSS------SLYRHFRNK 73 (241)
T ss_dssp CHHHHHHHHHHHHSSS-SC-CCCCHHHHHHHTTSCHH------HHHHHTSSH
T ss_pred HHHHHHHHHHHHHHhc-Cc-ccCCHHHHHHHhCcCHH------HHHHHcCCH
Confidence 4556666433333333 65 45678999999999977 677777654
No 203
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=32.80 E-value=26 Score=31.88 Aligned_cols=63 Identities=17% Similarity=0.433 Sum_probs=44.2
Q ss_pred CChhhHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh-----hhhhccccc
Q 022828 85 FSDTNKEKVKEILSHYPS--NYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV-----ATFYSMFNR 155 (291)
Q Consensus 85 ~~~~~~~~i~~il~~yp~--~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V-----aTFY~~f~~ 155 (291)
.+++..-.++.+|++|.- +.+...++.||+ + + -|.|. ++||+.||++.++|.|- ...|+.+++
T Consensus 162 vppemageferlierydvpidekeerileilr---e-n-pwtph---deiarrlglsvsevegekdpessgiyslwsr 231 (380)
T 3m6z_A 162 VPPEMAGEFERLIERYDVPIDEKEERILEILR---E-N-PWTPH---DEIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (380)
T ss_dssp CCGGGTTTHHHHHHHTTCCCCHHHHHHHHHHH---H-C-TTCCH---HHHHHHHTCCHHHHHCCSSTTSCSHHHHHHH
T ss_pred CChhhhhHHHHHHHHcCCCCChHHHHHHHHHh---c-C-CCCCh---HHHHHHhCCchhhhcCCCCcccccHHHhhhh
Confidence 566777788999999974 223444555554 3 3 79986 57899999999999763 456666654
No 204
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.95 E-value=14 Score=29.86 Aligned_cols=43 Identities=9% Similarity=0.228 Sum_probs=29.4
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
++..|+. .++++.+ + || ..-.|..||+..||+.. |||.+|..+
T Consensus 9 ~r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~~------tiY~~F~sK 52 (202)
T 2d6y_A 9 TKARIFEAAVAEFAR-H-GI-AGARIDRIAAEARANKQ------LIYAYYGNK 52 (202)
T ss_dssp HHHHHHHHHHHHHHH-H-TT-TSCCHHHHHHHHTCCHH------HHHHHHSSH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCH
Confidence 3445555 4555554 3 65 45568899999999976 788888654
No 205
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=31.84 E-value=19 Score=29.33 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=28.7
Q ss_pred cHHHHHHHH-HHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 108 AVIPLLDLA-QQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 108 alipiL~~~-Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
.|+.....+ -... || ..-.+..||+..||+.. |||.+|..+.
T Consensus 23 ~I~~Aa~~lF~~~~-g~-~~~tv~~Ia~~Agvs~~------t~Y~~F~~K~ 65 (185)
T 3o60_A 23 KLYTVLERFYVEDR-TF-ESISIKDLCEQARVSRA------TFYRHHKEII 65 (185)
T ss_dssp HHHHHHHHHHHTTC-CT-TTCCHHHHHHHHTCCHH------HHHHHCSSTH
T ss_pred HHHHHHHHHHHhcC-Cc-ccCCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 455554444 2223 54 55568899999999976 8999998663
No 206
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.83 E-value=16 Score=29.81 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=30.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .++.+.+ + || ..-.|+.||+..||+.. |||++|..|.
T Consensus 11 r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~aGvs~g------tlY~yF~sKe 54 (209)
T 2gfn_A 11 RRALADAVLALIAR-E-GI-SAVTTRAVAEESGWSTG------VLNHYFGSRH 54 (209)
T ss_dssp HHHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHSSCHH------HHHHHTSSHH
T ss_pred HHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHHCCCcc------hHHhcCCCHH
Confidence 344555 5556665 3 76 45679999999999976 7888997643
No 207
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=31.65 E-value=68 Score=23.50 Aligned_cols=24 Identities=0% Similarity=0.108 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-|.+.+....||+.++++..+|.-
T Consensus 33 pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 33 AYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHhhH
Confidence 689999999999999999998753
No 208
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=31.49 E-value=45 Score=27.97 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=31.4
Q ss_pred eEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCC
Q 022828 161 YHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 209 (291)
Q Consensus 161 ~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG 209 (291)
..++||+|-.|..-=|+.|++.+-++-++ ++.|.+...|=-+
T Consensus 20 kVLFVCtGNiCRSpmAE~i~r~~~~~~gl-------~~~~~v~SAGt~~ 61 (173)
T 4etm_A 20 SVLFVCLGNICRSPMAEAIFRDLAAKKGL-------EGKIKADSAGIGG 61 (173)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTC-------TTTEEEEEEESSC
T ss_pred EEEEEeCCcchhhHHHHHHHHHHHHHcCC-------CCceEEecccccc
Confidence 58999999999987788888777666553 3458887776543
No 209
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.36 E-value=15 Score=30.34 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=29.3
Q ss_pred ccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 107 SAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 107 ~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
..||. .++++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 43 ~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~Agvs~~------t~Y~~F~sK~ 85 (225)
T 2id3_A 43 EAVLLAAGDALAA-D-GF-DALDLGEIARRAGVGKT------TVYRRWGTPG 85 (225)
T ss_dssp HHHHHHHHHHHHH-H-CG-GGCCHHHHHHHHTCCHH------HHHHHHCSHH
T ss_pred HHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHHCCCHH------HHHHHCCCHH
Confidence 34444 5555554 3 76 45678999999999976 7888887643
No 210
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=31.07 E-value=17 Score=30.07 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+.
T Consensus 46 r~~Il~aA~~lf~e-~-G~-~~~t~~~IA~~aGvs~~------tlY~~F~sK~ 89 (236)
T 3q0w_A 46 ELAILATAENLLED-R-PL-ADISVDDLAKGAGISRP------TFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHHHHHHH-S-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-c-Cc-ccCCHHHHHHHhCCcHH------HHHHHCCCHH
Confidence 334555 4445544 4 66 34568899999999865 8899998654
No 211
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=29.89 E-value=21 Score=29.85 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=29.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .+.++.+ + || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 25 r~~Il~aA~~lf~~-~-G~-~~~s~~~IA~~agvs~~------tlY~~F~sKe 68 (231)
T 2zcx_A 25 EEAILDAARELGTE-R-GI-REITLTDIAATVGMHKS------ALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHHHHHHH-H-CS-TTCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHh-C-Cc-ccCCHHHHHHHhCCCHH------HHHHhCCCHH
Confidence 334555 4445554 3 76 35678999999999976 7888887654
No 212
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=29.85 E-value=19 Score=29.52 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=30.7
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .+.++.+ + || ..-.|+.||+..||+.. +||.+|..+.
T Consensus 36 ~r~~Il~aA~~lf~~-~-G~-~~~t~~~IA~~AGvs~~------tlY~~F~sKe 80 (221)
T 3g7r_A 36 ARARLLGTATRIFYA-E-GI-HSVGIDRITAEAQVTRA------TLYRHFSGKD 80 (221)
T ss_dssp HHHHHHHHHHHHHHH-H-CS-TTSCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCHH------HHHHHCCCHH
Confidence 4555666 4555554 4 65 45568899999999866 7888888654
No 213
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=29.81 E-value=18 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=30.9
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
++..||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..|.
T Consensus 15 ~R~~Il~AA~~lf~~-~-G~-~~~s~~~IA~~AGvs~~------tlY~~F~sKe 59 (208)
T 3v6g_A 15 RRQAIVEAAERVIAR-Q-GL-GGLSHRRVAAEANVPVG------STTYYFNDLD 59 (208)
T ss_dssp HHHHHHHHHHHHHHH-H-CT-TCCCHHHHHHHHTSCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHH-h-Cc-ccCCHHHHHHHhCCCch------hHHHHcCCHH
Confidence 3455666 5555555 3 76 44568999999999976 7888887653
No 214
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.42 E-value=51 Score=24.29 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVAT 148 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaT 148 (291)
|..||+.+++ + |.++. .++|+.|+++++.|..-..
T Consensus 4 L~~Il~~L~~-~-g~vsv---~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 4 LIQVRDLLAL-R-GRMEA---AQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp HHHHHHHHHH-S-CSBCH---HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH-c-CCCcH---HHHHHHHCcCHHHHHHHHH
Confidence 6678888886 3 88874 5789999999998765443
No 215
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=29.23 E-value=19 Score=30.15 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=28.4
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..||. .++++. ++ || ..-.|..||+..||+.. |||.+|..+.
T Consensus 45 r~~Il~AA~~lf~-~~-G~-~~~t~~~IA~~aGvs~~------tlY~~F~sK~ 88 (255)
T 3g1o_A 45 ELAILATAENLLE-DR-PL-ADISVDDLAKGAGISRP------TFYFYFPSKE 88 (255)
T ss_dssp HHHHHHHHHHHHT-TS-CG-GGCCHHHHHHHHTCCHH------HHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-Hc-CC-ccCcHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 445555 344443 33 66 34458899999999865 7888887543
No 216
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.11 E-value=21 Score=27.41 Aligned_cols=42 Identities=10% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCC
Q 022828 81 LPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEV 138 (291)
Q Consensus 81 ~~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~i 138 (291)
.+|.++++++++++++...+..+ .. |+|+.+-+..+-..+++
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d---------------~d-G~Is~~el~~~l~~~gl 53 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPD---------------PS-SFISGSVAKNFFTKSKL 53 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCS---------------SS-SEEEHHHHHHHCCSSSC
T ss_pred CCCcCCHHHHHHHHHHHHHHCCC---------------CC-CeEcHHHHHHHHHHcCC
Confidence 46889999999999999999752 12 88888777665433333
No 217
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=28.91 E-value=57 Score=26.74 Aligned_cols=43 Identities=5% Similarity=-0.015 Sum_probs=31.3
Q ss_pred ceEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCc-EEEEEecCCC
Q 022828 160 KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGL-FSVGEMECMG 209 (291)
Q Consensus 160 K~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~-ftL~~v~CLG 209 (291)
+..++||+|-.|..-=|+.|++++-.+.|+ ++. |.+...|=-.
T Consensus 8 ~~VLFVCtgN~cRSpmAEal~~~~~~~~gl-------~~~~~~v~SAGt~~ 51 (161)
T 1d1q_A 8 ISVAFIALGNFCRSPMAEAIFKHEVEKANL-------ENRFNKIDSFGTSN 51 (161)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTC-------GGGEEEEEEEESSC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHHHcCC-------CCCeEEEEeccccC
Confidence 568999999999987788888777766543 234 7777666543
No 218
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=28.89 E-value=33 Score=26.06 Aligned_cols=37 Identities=5% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFY 150 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY 150 (291)
|..||+.+++ + |.++ +.++|+.|+|+++.|.......
T Consensus 4 L~~Il~~L~~-~-g~vs---v~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 4 LMEVRDMLAL-Q-GRME---AKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp THHHHHHHHH-S-CSEE---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-c-CCCc---HHHHHHHHCcCHHHHHHHHHHH
Confidence 6678888886 3 7877 4678999999999998877654
No 219
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=28.77 E-value=17 Score=30.35 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=29.6
Q ss_pred CcccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccc
Q 022828 105 KQSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRS 156 (291)
Q Consensus 105 ~~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~ 156 (291)
++..||. .+.++.+ + || ..-.|..||+..||+.. |||.+|..+
T Consensus 19 ~r~~Il~AA~~lf~~-~-G~-~~~t~~~IA~~aGvs~~------tlY~~F~sK 62 (251)
T 3npi_A 19 STDTVLDIALSLFSE-L-GF-SDAKLEAIAKKSGMSKR------MIHYHFGDK 62 (251)
T ss_dssp CHHHHHHHHHHHHHH-H-HH-HHCCHHHHHHHHCCCHH------HHHHHHCSH
T ss_pred HHHHHHHHHHHHHHH-c-Cc-cccCHHHHHHHHCCCHH------HHHHHcCCH
Confidence 5556666 5555554 3 65 34568899999999876 777787654
No 220
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.61 E-value=16 Score=27.32 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=21.9
Q ss_pred CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 85 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 85 ~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
...+....+.+.+...+. ++ ..+|...- . |+ ..++||+.|+|+...|+.
T Consensus 13 ~~~~~~~~l~~~l~~Lt~--~e---~~vl~l~~--~-g~----s~~eIA~~l~is~~tV~~ 61 (95)
T 3c57_A 13 GLVPRGSHMQDPLSGLTD--QE---RTLLGLLS--E-GL----TNKQIADRMFLAEKTVKN 61 (95)
T ss_dssp --------------CCCH--HH---HHHHHHHH--T-TC----CHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCH--HH---HHHHHHHH--c-CC----CHHHHHHHHCcCHHHHHH
Confidence 445666778888888874 22 22333332 2 44 358999999999998764
No 221
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=27.69 E-value=55 Score=26.99 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=30.4
Q ss_pred ceEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCC
Q 022828 160 KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECM 208 (291)
Q Consensus 160 K~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CL 208 (291)
+..++||+|-.|..-=|+.|++++-++.|+. +.|.+...|=-
T Consensus 5 ~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~-------~~~~v~SAGt~ 46 (161)
T 3jvi_A 5 MKLLFVCLGNICRSPAAEAVMKKVIQNHHLT-------EKYICDSAGTC 46 (161)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCG-------GGEEEEEEESC
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHHcCCC-------CcEEEEeeecC
Confidence 4578999999999877888888777665531 34777665543
No 222
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=27.45 E-value=63 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.7
Q ss_pred ceEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCC
Q 022828 160 KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 209 (291)
Q Consensus 160 K~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG 209 (291)
...++||+|-.|..-=|+.|++++-++-|. .+.|.+...|=-.
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~~~gl-------~~~~~v~SAGt~~ 47 (163)
T 1u2p_A 5 LHVTFVCTGNICRSPMAEKMFAQQLRHRGL-------GDAVRVTSAGTGN 47 (163)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTC-------TTTEEEEEEESSC
T ss_pred CEEEEEcCCcHhHHHHHHHHHHHHHHHCCC-------CCcEEEEecccCC
Confidence 468999999999988788888877766543 2357777766554
No 223
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=27.15 E-value=37 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCchhhhhh-hhhhcccccccC
Q 022828 126 VSAMNEVAKIIEVAPIRVYEV-ATFYSMFNRSKV 158 (291)
Q Consensus 126 ~eam~~IAe~L~ip~~~V~~V-aTFY~~f~~~P~ 158 (291)
.+.+++|++.++++..++... +-||+.++.-.+
T Consensus 33 ~dL~~eV~~~~~~s~ee~~~~iaqfYTdLn~DGR 66 (99)
T 2krc_A 33 QELLNEIASLLGVKKEELGDRIAQFYTDLNIDGR 66 (99)
T ss_dssp HHHHHHHHHHHTSCGGGGTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCC
Confidence 456677777788998888544 559999887654
No 224
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=27.15 E-value=73 Score=26.09 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=31.7
Q ss_pred ceEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCC
Q 022828 160 KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 209 (291)
Q Consensus 160 K~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG 209 (291)
...++||+|-.|..-=|+.|++++-.+-|+ ++.|.+...|=-.
T Consensus 5 ~~VLFVC~gN~cRSpmAEal~~~~~~~~gl-------~~~~~v~SAGt~~ 47 (161)
T 2cwd_A 5 VRVLFVCLGNICRSPMAEGIFRKLLKERGL-------EDRFEVDSAGTGA 47 (161)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHTC-------TTTEEEEEEESSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHHHHcCC-------CCcEEEEecccCC
Confidence 468999999999987788888877766553 2357777766554
No 225
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=26.57 E-value=20 Score=29.60 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=29.5
Q ss_pred cccHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhccccccc
Q 022828 106 QSAVIP-LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSK 157 (291)
Q Consensus 106 ~~alip-iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P 157 (291)
+..|+. .++++.+ . || ..-.|+.||+..||+.. |||.+|..+.
T Consensus 41 r~~Il~AA~~lf~e-~-G~-~~~tv~~IA~~AGvs~~------tlY~~F~sKe 84 (214)
T 2guh_A 41 RSLIVDAAGRAFAT-R-PY-REITLKDIAEDAGVSAP------LIIKYFGSKE 84 (214)
T ss_dssp HHHHHHHHHHHHHH-S-CG-GGCCHHHHHHHHTSCHH------HHHHHHSSHH
T ss_pred HHHHHHHHHHHHHH-c-Ch-hhcCHHHHHHHhCCCHH------HHHHHcCCHH
Confidence 445555 4455554 3 65 45568899999999976 7888887644
No 226
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=26.07 E-value=77 Score=25.76 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-+.+|...-+.. .|.+.+....||+.||++..+|.
T Consensus 98 Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 98 AKDALERHFGEH-SKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp HHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCChhhch
Confidence 345565555444 79999999999999999999875
No 227
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=26.04 E-value=1.7e+02 Score=20.65 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 022828 88 TNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVAT 148 (291)
Q Consensus 88 ~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaT 148 (291)
+....+.+++..+.-. ..-+.+|..+.+. |-++ +.+||+.++++.+.|+..+.
T Consensus 4 ~~~~~~~~~l~~~~l~---~~~~~il~~l~~~--~~~s---~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 4 NPLGELVKALEKLSFK---PSDVRIYSLLLER--GGMR---VSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp CHHHHHHHHHHHTCCC---HHHHHHHHHHHHH--CCBC---HHHHHHHHTCCHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCC---HHHHHHHHHHHHc--CCCC---HHHHHHHHCCCHHHHHHHHH
Confidence 3456788888888731 2344566666543 4444 67899999999999887654
No 228
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=25.96 E-value=66 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=30.6
Q ss_pred eEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCC
Q 022828 161 YHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 209 (291)
Q Consensus 161 ~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG 209 (291)
..++||+|-.|..-=|+.|++.+-..-|+. +.|.+...|=-.
T Consensus 3 ~VLFVC~gNicRSpmAEai~~~~~~~~gl~-------~~~~v~SAGt~~ 44 (156)
T 2gi4_A 3 KILFICLGNICRSPMAEFIMKDLVKKANLE-------KEFFINSAGTSG 44 (156)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHHHHHTTT-------TTCEEEEEBSSC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC-------CcEEEEeeecCC
Confidence 579999999999887888888877665532 246666665543
No 229
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=25.89 E-value=76 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-+.. .|.+.+....||+.||++..+|.
T Consensus 105 ~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 105 IEALNAYFEKN-PLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHCCCHHHhH
Confidence 44555444444 79999999999999999999874
No 230
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.71 E-value=44 Score=26.76 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh
Q 022828 88 TNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV 146 (291)
Q Consensus 88 ~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V 146 (291)
+....+.+.|++.|+ +...+-.|+.++ |+ ...+||+.||+++..|+..
T Consensus 129 e~~~~l~~~l~~L~~---~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~ 176 (194)
T 1or7_A 129 ELRQIVFRTIESLPE---DLRMAITLRELD----GL----SYEEIAAIMDCPVGTVRSR 176 (194)
T ss_dssp HHHHHHHHHHHHSCH---HHHHHHHHHHTT----CC----CHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCH---HHHHHhHHHHHc----CC----CHHHHHHHHCCCHHHHHHH
Confidence 455678889999985 222333444332 33 4689999999999988754
No 231
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.50 E-value=34 Score=24.72 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=32.1
Q ss_pred CCCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 82 PWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 82 ~~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
...|+.+.+..++.+..+... ...|.+.+....||+.|||+..+|.
T Consensus 12 Rt~ft~~Q~~~Le~~F~~~~~-----------------~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 12 RTQFSDRDLATLKKYWDNGMT-----------------SLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp SCCCCHHHHHHHHHHHTTTTT-----------------CCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCC-----------------CCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 345777777777666644411 0146777888899999999999875
No 232
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.33 E-value=71 Score=24.40 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhh
Q 022828 87 DTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVA 147 (291)
Q Consensus 87 ~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~Va 147 (291)
.+....+.+.|+.-|+ +...+-.|+...+. -..-..++||+.||++...|....
T Consensus 7 ~el~~~l~~aL~~Lp~---reR~Vi~Lry~l~~----~e~~s~~EIA~~lgiS~~tVr~~~ 60 (99)
T 3t72_q 7 ESLRAATHDVLAGLTA---REAKVLRMRFGIDM----NTDYTLEEVGKQFDVTRERIRQIE 60 (99)
T ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHhcCC----CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 4566789999999986 22233334433210 123468999999999999987653
No 233
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=24.79 E-value=67 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=20.3
Q ss_pred CCCeEEEcccCCCCCCccceEecCCChhhHHHHHH
Q 022828 213 NAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247 (291)
Q Consensus 213 ~aPvV~Vnd~~~G~~g~~~~~Y~~vTpE~V~~ILe 247 (291)
.-|++.+++ ......+++++.++|+
T Consensus 67 ~vP~l~~~g----------~~i~G~~~~~l~~~l~ 91 (92)
T 3ic4_A 67 SVPVVVKGD----------KHVLGYNEEKLKELIR 91 (92)
T ss_dssp CSCEEEETT----------EEEESCCHHHHHHHHH
T ss_pred CcCEEEECC----------EEEeCCCHHHHHHHhc
Confidence 569999965 6778889999988875
No 234
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.56 E-value=43 Score=27.55 Aligned_cols=47 Identities=34% Similarity=0.416 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh
Q 022828 89 NKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV 146 (291)
Q Consensus 89 ~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V 146 (291)
....+.+.|++-|+ +...+-.|+.++ |+ ...+||+.|||+...|...
T Consensus 177 ~~~~l~~~l~~L~~---~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~ 223 (239)
T 1rp3_A 177 LTEKVKEAVSKLPE---REKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQL 223 (239)
T ss_dssp HHHHHHHHHTTSCH---HHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHH
Confidence 44568888888885 223333344332 33 5789999999999988754
No 235
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=24.45 E-value=1.7e+02 Score=19.88 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCch
Q 022828 83 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPI 141 (291)
Q Consensus 83 ~~~~~~~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~ 141 (291)
-.++++.++.++++...|..+ .. |+|+.+-+..+-..+|.++.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d---------------~~-G~I~~~el~~~l~~~g~~~~ 48 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRN---------------AE-NIAPVSDTMDMLTKLGQTYT 48 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTT---------------TT-SCBCHHHHHHHHHHTSCCCS
T ss_pred ccCCHHHHHHHHHHHHHhCCC---------------CC-CcCcHHHHHHHHHHHcCCCC
Confidence 447888899999999998742 12 77777777777777776544
No 236
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=24.10 E-value=1.7e+02 Score=25.18 Aligned_cols=64 Identities=16% Similarity=0.305 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccCCceEEEEcCCCcccccChHHHHHHHHHHhC
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLG 188 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~gK~~I~VC~gtsC~~~Gs~~lleaL~~~Lg 188 (291)
.+-.|..++++..-+|| -+++|+.+|+++++|.-=.++|-.|-..-.| |. -..+++.+++.|+
T Consensus 14 y~r~l~~l~~~g~~~is---s~~l~~~~~~~~~~iRkdls~~g~~G~~g~g-Y~-------------v~~L~~~~~~~lg 76 (211)
T 2dt5_A 14 YLRILEELEAQGVHRTS---SEQLGGLAQVTAFQVRKDLSYFGSYGTRGVG-YT-------------VPVLKRELRHILG 76 (211)
T ss_dssp HHHHHHHHHHTTCCEEC---HHHHHHHHTSCHHHHHHHHHHTTCCCCTTTC-EE-------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcEEC---HHHHHHHhCCCHHHeechHHHHHHhcCCcee-EE-------------hHHHHHHHHHHhC
Confidence 34567777764323344 4678999999999998888888777544444 43 2567888888887
Q ss_pred C
Q 022828 189 V 189 (291)
Q Consensus 189 i 189 (291)
.
T Consensus 77 ~ 77 (211)
T 2dt5_A 77 L 77 (211)
T ss_dssp T
T ss_pred c
Confidence 5
No 237
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=23.93 E-value=88 Score=25.59 Aligned_cols=35 Identities=6% Similarity=-0.053 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
+.+|...-+.. -|.+.+....||+.||++..+|.-
T Consensus 109 ~~~Le~~F~~~-~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 109 RRTLHAIFKEN-KRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHhhh
Confidence 34454444444 799999999999999999998653
No 238
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=23.75 E-value=62 Score=27.24 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=29.4
Q ss_pred eEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecC
Q 022828 161 YHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMEC 207 (291)
Q Consensus 161 ~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~C 207 (291)
..++||+|-.|..-=|+.|++.+.+.++. .|.+...|-
T Consensus 36 kVLFVC~GNiCRSpmAE~l~r~~~~~~g~---------~~~v~SAGt 73 (180)
T 4egs_A 36 RVLFVCTGNTCRSPMAEGIFNAKSKALGK---------DWEAKSAGV 73 (180)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTC---------CCEEEEEET
T ss_pred EEEEEeCCCcccCHHHHHHHHHHHHhcCC---------ceEEEEeee
Confidence 58999999999988888888877776652 366766664
No 239
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=23.69 E-value=89 Score=25.68 Aligned_cols=34 Identities=6% Similarity=-0.016 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 110 IPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 110 ipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
+.+|...-... .|.+.+....||+.||++..+|.
T Consensus 113 ~~~Le~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 113 RVALEKSFMEN-QKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp HHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhhc-CCCCHHHHHHHHHHHCCChHHhh
Confidence 33444333333 78999999999999999999874
No 240
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=23.56 E-value=68 Score=31.82 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=32.4
Q ss_pred eEEEEcCCC-cccccC------hHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCCCCCC
Q 022828 161 YHLLVCGTT-PCMVRG------SREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVN 213 (291)
Q Consensus 161 ~~I~VC~gt-sC~~~G------s~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG~C~~ 213 (291)
..|.-|.|. -|...- +..|.+.|++.+.-. + ...+..|.+.-+||...|..
T Consensus 423 r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~-~-~~~~~~~ki~vSGCpN~Ca~ 480 (566)
T 1zj8_A 423 RNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDI-N-SQLDVPITVNINGCPNSCAR 480 (566)
T ss_dssp HHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTHHH-H-TTCCSCCCEEEESSTTCTTC
T ss_pred cccccCCCcccCccchhhHHHHHHHHHHHHHHHhhcc-c-cccCCCceEEEecCCccchh
Confidence 358999996 575443 345666666665210 0 01234688999999999974
No 241
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=22.68 E-value=95 Score=25.79 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
-+.+|...-... .|.+.+....||+.|+++..+|.
T Consensus 110 Ql~~LE~~F~~~-~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 110 VKGALESHFLKC-PKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp HHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHCCChhhhh
Confidence 344555544444 79999999999999999999864
No 242
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=22.68 E-value=59 Score=21.58 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=18.1
Q ss_pred CCeEEEcccCCCCCCccceEecCCChhhHHHHHH
Q 022828 214 APMITVADYSNGSEGYTYNYYEDVTPKRVIEIVE 247 (291)
Q Consensus 214 aPvV~Vnd~~~G~~g~~~~~Y~~vTpE~V~~ILe 247 (291)
-|++.+++ ..+...+++++.++|+
T Consensus 51 vP~l~~~g----------~~~~g~~~~~l~~~l~ 74 (75)
T 1r7h_A 51 APVVEVDG----------EHWSGFRPERIKQLQA 74 (75)
T ss_dssp CCEEEETT----------EEEESCCHHHHHHHHC
T ss_pred cCEEEECC----------eEEcCCCHHHHHHHHh
Confidence 59888765 5677889888877764
No 243
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=22.37 E-value=3.6e+02 Score=22.94 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHHhcCCCC-C-HHHHHHHHHHhCCCchhhhhhhhhhcccccccCCceEEEEcCCCcccccChHHHHHHH
Q 022828 106 QSAVIPLLDLAQQQHGGWL-P-VSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDAL 183 (291)
Q Consensus 106 ~~alipiL~~~Q~~~~GyI-p-~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~gK~~I~VC~gtsC~~~Gs~~lleaL 183 (291)
...++..|..++-....-| . .+.+..+|+.+|++..++..... . + -...+.|.+..
T Consensus 116 ~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~-------s-------------~--~~~~~~v~~~~ 173 (239)
T 3gl5_A 116 HEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLA-------D-------------P--AAYADEVRADE 173 (239)
T ss_dssp HHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHH-------C-------------T--TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHc-------C-------------c--HhHHHHHHHHH
Confidence 3445554444432222345 4 69999999999999887665432 0 0 12234454444
Q ss_pred HH--HhCCCCCcccCCCcEEEEEecCCCCCCCCCeEEEcccCCCCCCccceEecCCChhhHHHHHHHHHcCC
Q 022828 184 LK--HLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDVTPKRVIEIVEMLRRGE 253 (291)
Q Consensus 184 ~~--~Lgi~~Gett~DG~ftL~~v~CLG~C~~aPvV~Vnd~~~G~~g~~~~~Y~~vTpE~V~~ILe~l~~G~ 253 (291)
+. .+|+. --|.+.||+. +.+.+..+++.+.++|+++.+.+
T Consensus 174 ~~a~~~Gv~----------------------GvPtfvv~g~--------~~v~Ga~~~e~~~~~i~~~~~~~ 215 (239)
T 3gl5_A 174 REAAQLGAT----------------------GVPFFVLDRA--------YGVSGAQPAEVFTQALTQAWGER 215 (239)
T ss_dssp HHHHHTTCC----------------------SSSEEEETTT--------EEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCC----------------------eeCeEEECCc--------EeecCCCCHHHHHHHHHHHHhhc
Confidence 43 33432 2399999861 24566778999999999876543
No 244
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=22.09 E-value=43 Score=31.46 Aligned_cols=63 Identities=17% Similarity=0.433 Sum_probs=43.9
Q ss_pred CChhhHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh-----hhhhccccc
Q 022828 85 FSDTNKEKVKEILSHYPS--NYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV-----ATFYSMFNR 155 (291)
Q Consensus 85 ~~~~~~~~i~~il~~yp~--~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V-----aTFY~~f~~ 155 (291)
.+++..-.++.+|++|.- +.+...++.||+ + + -|.|. ++||..||++.++|.|- ...|+.|++
T Consensus 162 vppemageferlierydvpidekeerileilr---e-n-pwtph---deiarrlglsvsevegekdpessgiyslwsr 231 (519)
T 2csb_A 162 VPPEMAGEFERLIERYDVPIDEKEERILEILR---E-N-PWTPH---DEIARRLGLSVSEVEGEKDPESSGIYSLWSR 231 (519)
T ss_dssp CCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHH---H-C-TTCCH---HHHHHHHTCCHHHHHCCSSSSSCSHHHHHHH
T ss_pred CChhhhhHHHHHHHHcCCCCChHHHHHHHHHh---c-C-CCCCh---HHHHHHhCCchhhhcCCCCcccccHHHHhhh
Confidence 456666778899999974 223344555544 3 3 79986 57899999999999763 456666654
No 245
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=22.08 E-value=1.1e+02 Score=27.65 Aligned_cols=104 Identities=8% Similarity=-0.044 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhhhhcccccccCCceEEEEcCC
Q 022828 89 NKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGT 168 (291)
Q Consensus 89 ~~~~i~~il~~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaTFY~~f~~~P~gK~~I~VC~g 168 (291)
....|+.+++..|. ..++.|+-+|-+.-..++|.|+...+-.+.+.+||+..-|+-.. ++++..|-..-. =.|
T Consensus 9 ~~~~i~~~~~~~~~-~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al-----~RL~~~G~l~~~-~~G 81 (266)
T 3l09_A 9 IRPLVEALNAEAPL-KLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVAL-----HRLKRDGWVESR-RLG 81 (266)
T ss_dssp HHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHH-----HHHHHTTSEEEE-EET
T ss_pred HHHHHHHHHhcCCC-ChhHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCchHHHHHH-----HHHHHCCCeeee-ecC
Confidence 34567777777775 46778888887555556799999999999999999999888754 455666643222 111
Q ss_pred -Ccccc---cChHHHHHHHHHHhCCCCCcccCCCcEEEE
Q 022828 169 -TPCMV---RGSREIEDALLKHLGVKRNEVTKDGLFSVG 203 (291)
Q Consensus 169 -tsC~~---~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~ 203 (291)
.+-+. .|-..+-+..+.... ....||.+.+.
T Consensus 82 r~~~Y~Lt~~g~~~l~~~~~ri~~----~~~Wdg~W~lv 116 (266)
T 3l09_A 82 RVGFHRLSDSALTQTRAVAGRIYG----PGAGPAPWHLA 116 (266)
T ss_dssp TEEEEEECHHHHHHHHTTHHHHHS----CCCCSCCCEEE
T ss_pred CcceEEECHHHHHHHHHHHHHhcC----CCCCCCCEEEE
Confidence 11111 233333333344444 12468888876
No 246
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=22.02 E-value=75 Score=26.09 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=30.6
Q ss_pred ceEEEEcCCCcccccChHHHHHHHHHHhCCCCCcccCCCcEEEEEecCCC
Q 022828 160 KYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMG 209 (291)
Q Consensus 160 K~~I~VC~gtsC~~~Gs~~lleaL~~~Lgi~~Gett~DG~ftL~~v~CLG 209 (291)
+..++||+|-.|..-=|+.|++.+-...|+ ++.|.+...|=-.
T Consensus 6 ~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl-------~~~~~v~SAGt~~ 48 (157)
T 3n8i_A 6 KSVLFVCLGNICRSPIAEAVFRKLVTDQNI-------SENWRVDSAATSG 48 (157)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTC-------GGGEEEEEEESSS
T ss_pred CEEEEECCCchhHHHHHHHHHHHHHHHcCC-------CCcEEEEeeecCc
Confidence 457899999999987778888777766553 2347776665443
No 247
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.97 E-value=65 Score=23.69 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCchhhhh
Q 022828 110 IPLLDLAQQQ---HGGWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 110 ipiL~~~Q~~---~~GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
-.||..+++. ..||- ..+.+||+.||++++-|..
T Consensus 7 ~~IL~~I~~~i~~~~g~~--psv~EIa~~lgvS~~TVrr 43 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAP--VKTRDIADAAGLSIYQVRL 43 (77)
T ss_dssp HHHHHHHHHHHHHHTTSC--EEHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHhhccCCC--cCHHHHHHHHCCCHHHHHH
Confidence 3455555543 11553 5789999999998776543
No 248
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.26 E-value=72 Score=22.27 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhhhh
Q 022828 112 LLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVAT 148 (291)
Q Consensus 112 iL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~VaT 148 (291)
||..+.+. .++++ ..+||+.||+|.+.|+..+.
T Consensus 15 IL~~L~~~-~~~~s---~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 15 ILQVLSDD-GGPVA---IFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HHHHHHHH-CSCEE---HHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHc-CCCcC---HHHHHHHHCcCHHHHHHHHH
Confidence 44444432 24555 46799999999998877654
No 249
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.98 E-value=67 Score=21.79 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHhCCCchhhh
Q 022828 123 WLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 123 yIp~eam~~IAe~L~ip~~~V~ 144 (291)
-++.+.+..||+.|++++.++.
T Consensus 47 ~~~~~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 47 QPSLETLFDIAEALNVDVRELI 68 (73)
T ss_dssp CCCHHHHHHHHHHHTSCGGGGB
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 5899999999999999988764
No 250
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.91 E-value=67 Score=21.39 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHhCCCchhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.-++.+.+..||+.|++++.++.
T Consensus 48 ~~~~~~~l~~la~~l~v~~~~l~ 70 (71)
T 2ewt_A 48 RAVTVQRLAELADFYGVPVQELL 70 (71)
T ss_dssp SCCCHHHHHHHHHHHTSCGGGGC
T ss_pred CCCCHHHHHHHHHHHCcCHHHHc
Confidence 35788999999999999988654
No 251
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.62 E-value=1.4e+02 Score=22.11 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRV 143 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V 143 (291)
|--+...+|+.. -|.+.++.+.+|..||+|...|
T Consensus 19 L~~Lqs~f~~~~-~yPd~~~r~~La~~tGL~~~~I 52 (71)
T 1wi3_A 19 LGILQSFIHDVG-LYPDQEAIHTLSAQLDLPKHTI 52 (71)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHhCCCHHHH
Confidence 333344555422 5899999999999999999874
No 252
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=1.4e+02 Score=22.08 Aligned_cols=35 Identities=6% Similarity=-0.069 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhh
Q 022828 109 VIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVY 144 (291)
Q Consensus 109 lipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~ 144 (291)
.+.+|...-... -+-+.+.+..||+.+|++...|.
T Consensus 16 ql~~Lk~yF~~n-~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 16 HMSVLKAYYAMN-MEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp HHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCHHHHH
Confidence 455666554444 68999999999999999988654
No 253
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.42 E-value=50 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=30.8
Q ss_pred hhHHHHHHHHH-hCCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCchhhhhh
Q 022828 88 TNKEKVKEILS-HYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEV 146 (291)
Q Consensus 88 ~~~~~i~~il~-~yp~~~~~~alipiL~~~Q~~~~GyIp~eam~~IAe~L~ip~~~V~~V 146 (291)
+....+.+.|. +.|+. +..++- + .+ .|+ ...+||+.|||+...|+..
T Consensus 97 e~~~~l~~~l~~~L~~~--~r~v~~-~-~~----~g~----s~~EIA~~lgis~~tV~~~ 144 (164)
T 3mzy_A 97 EEIEEFKKFSENNFSKF--EKEVLT-Y-LI----RGY----SYREIATILSKNLKSIDNT 144 (164)
T ss_dssp HHHHHHHHHHHHHSCHH--HHHHHH-H-HT----TTC----CHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHH--HHHHHH-H-HH----cCC----CHHHHHHHHCCCHHHHHHH
Confidence 44556777887 88852 222222 2 22 255 6789999999999988754
No 254
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.12 E-value=63 Score=23.94 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHhCCCchhhhh
Q 022828 122 GWLPVSAMNEVAKIIEVAPIRVYE 145 (291)
Q Consensus 122 GyIp~eam~~IAe~L~ip~~~V~~ 145 (291)
..++.+.+..||+.|++++.++.+
T Consensus 61 ~~~s~~~l~kIa~~L~v~~~~L~~ 84 (88)
T 3t76_A 61 ENVSLTVLLAICEYLNCDFGDIIE 84 (88)
T ss_dssp CCCCHHHHHHHHHHHTCCGGGTCE
T ss_pred CCcCHHHHHHHHHHHCcCHHHHhc
Confidence 358999999999999999988764
Done!