BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022829
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HKV|A Chain A, Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment
           In Complex With An Inhibitor 3-Aminobenzamide
 pdb|3HKV|B Chain B, Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment
           In Complex With An Inhibitor 3-Aminobenzamide
          Length = 217

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 14/133 (10%)

Query: 51  FKIFANAVAKKCGGNANIRPAWFGASRDEINEIVCHGFSQ--CGGDGARKLGPMHGFGVQ 108
           ++++   + ++C      +  + G +   + +I  HGF++  CG +       ++G GV 
Sbjct: 58  YELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRSFCGRNAT-----VYGKGVY 112

Query: 109 LLPINSSINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTS------LEFDSG 162
                S       S  +  G + + + RV+ G      RG +   P        L +DS 
Sbjct: 113 FAKRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRA-PPLRGPGHVLLRYDSA 171

Query: 163 VDNLCKPSRYTVW 175
           +D +C+PS + ++
Sbjct: 172 MDCICQPSIFVIF 184


>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
          Length = 352

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 142 MEVIPRGSKQFHPTSLEFDSGVDNLCKPSRY 172
           M+ I R  ++FH T L F S  D LC+ S +
Sbjct: 321 MKQIKRKIQEFHRTMLNFSSATDLLCQHSLF 351


>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
 pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
           Pyrazolo-Pyrimidine Ligand
 pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
           Imidazo-Pyridazine Ligand
 pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
           Ligand
 pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
           5-Iodotubercidin
          Length = 357

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 142 MEVIPRGSKQFHPTSLEFDSGVDNLCKPSRY 172
           M+ I R  ++FH T L F S  D LC+ S +
Sbjct: 326 MKQIKRKIQEFHRTMLNFSSATDLLCQHSLF 356


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,148,518
Number of Sequences: 62578
Number of extensions: 305356
Number of successful extensions: 595
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 4
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)