BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022829
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis
thaliana GN=SRO2 PE=1 SV=1
Length = 323
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 170/273 (62%), Gaps = 5/273 (1%)
Query: 1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCS-SLIARARLDSFKIFANAVA 59
++ + EG+ H ++K C LSGMG +++DT I+ + KNS + RA+ +F+IF +AVA
Sbjct: 45 LILLGEGNPEHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVA 104
Query: 60 KKCGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGV 119
+K GG+AN++ W+ SRDEI I+ +GFS G HG G+ L+P S+
Sbjct: 105 RKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAA 164
Query: 120 LSSESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYM 179
++E DE+GLR++LLCRVILGK E+I GSKQ +P+S EFDSGVD+L P Y +WSC M
Sbjct: 165 SATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNM 224
Query: 180 NSHIFVDYIVSFRVVCFSAS----AIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
NS I YIVSFR S A + +SPW +LM++ S + PS+M L+ + Y+D
Sbjct: 225 NSCILPSYIVSFRSPRLRVSRGGFASRPSSPWVSFASLMSMLSTSMDPSRMNLIIRTYDD 284
Query: 236 LQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMN 268
+ +KI Q V +++V GD LL + K + N
Sbjct: 285 FRKRKIRRDQLVRKMREVAGDNLLAEIIKNHKN 317
>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis
thaliana GN=SRO3 PE=1 SV=2
Length = 305
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 152/262 (58%), Gaps = 1/262 (0%)
Query: 4 IEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIA-RARLDSFKIFANAVAKKC 62
+ E H L+K CFLSGMG A +T I+ + K LI +A+ FK+F A+ +K
Sbjct: 40 LREATFEHNLIKNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKN 99
Query: 63 GGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSS 122
G ANIR W+ S++EI+ ++ +GFS HG G+ L+ S+ L
Sbjct: 100 NGYANIRYGWYSGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVG 159
Query: 123 ESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSH 182
E DE+G+++ILLCRVILGK E I GSKQ +P+S +FDSGVDNL P +Y +WSC MNS+
Sbjct: 160 EGDEEGIKNILLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSY 219
Query: 183 IFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKIT 242
I YIVSF+ + SP LM+I S+ L ++M L+ Y+D + +K+
Sbjct: 220 ILPTYIVSFKSHLLRGLIGRARSPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLR 279
Query: 243 SQQFVMNLKQVTGDKLLFTVTK 264
+Q V +++V GD LLF + K
Sbjct: 280 REQLVRKIREVVGDNLLFKILK 301
>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis
thaliana GN=SRO5 PE=1 SV=1
Length = 309
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 161/269 (59%), Gaps = 14/269 (5%)
Query: 1 MVKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAK 60
++++ EGD H L+ + SG+G +IL++ +N ++ +RA+L +F++F AV
Sbjct: 42 LMELLEGDKAHDLIYRNCKSGLG---DQCQILSVLRNGFRNVGSRAKLKTFQVFQEAVQM 98
Query: 61 KCGGN--ANIRPAWFGASRDEINEIVCHGFSQ-CGGDGARKLGPMHGFGVQLLPINSSIN 117
K GG+ A ++ W S+ E+ I +GFS+ DG+ G G+ L P NS ++
Sbjct: 99 KHGGDGGAKVKYGWCSVSKHELKTIFEYGFSEPLRNDGS------FGRGLYLSPDNSPLD 152
Query: 118 GVLSSESD-EKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWS 176
+ S S+ E G+R +LLCRV+LGK E++P+GS + P+S EFDSGVD+L +Y VWS
Sbjct: 153 CLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWS 212
Query: 177 CYMNSHIFVDYIVSFRV-VCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYND 235
+MN+H+ +++V + + S + SPW L+ S+FL PS++ ++ K+Y D
Sbjct: 213 THMNTHVLPEFLVCIKAPFNLTRSPKRLRSPWMAFPVLIKALSKFLPPSQILVIQKHYKD 272
Query: 236 LQNQKITSQQFVMNLKQVTGDKLLFTVTK 264
QN++IT + + ++ +TGDKLL + K
Sbjct: 273 QQNRRITRSELIQRVRSITGDKLLVHIIK 301
>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis
thaliana GN=SRO4 PE=2 SV=2
Length = 316
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 141/254 (55%), Gaps = 32/254 (12%)
Query: 25 LAADTRILALHKNSCSSLIARARLDSFKIFANAVAKK---CGGN-------ANIRPAWFG 74
L+ I+++ KN + + +A+L +F+I+A +VAKK C GN A ++ G
Sbjct: 71 LSNQFEIVSILKNGFQTPLGQAKLKAFQIYAESVAKKSGSCCGNKAAVAEAARVKYGCCG 130
Query: 75 ASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILL 134
++E+ I+ +GFS + A L P + P+ I+ SS +E G+ +L
Sbjct: 131 VEKEELKAILMYGFS----NNALCLSPDNA------PLQCMIDP--SSSCNEDGISFLLF 178
Query: 135 CRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRVV 194
R+I+GK EV+ S Q +P+S+EFDSGVD+L P++Y +WS +MN+H+ ++ VV
Sbjct: 179 SRIIMGKSEVVCSTS-QSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEF-----VV 232
Query: 195 CFSASAI----KTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNL 250
C +I SPW L+ S+FL+ S++ L+ K+Y + Q+++I+ + + L
Sbjct: 233 CIKTPSILKRKNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRL 292
Query: 251 KQVTGDKLLFTVTK 264
+ +TGD LL + K
Sbjct: 293 RSITGDSLLVQIIK 306
>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana
GN=RCD1 PE=1 SV=1
Length = 589
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 50/310 (16%)
Query: 14 VKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWF 73
VKK F G L + L SS IA ARL F+ + KK G+AN+R AW
Sbjct: 278 VKKMFAVGTASLG---HVPVLDVGRFSSEIAEARLALFQKQVE-ITKKHRGDANVRYAWL 333
Query: 74 GASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHIL 133
A R+ ++ ++ G GG RK ++G G+ L + + DE G+R+++
Sbjct: 334 PAKREVLSAVMMQGLG-VGGAFIRK--SIYGVGIHLTAADCPYFSARYCDVDENGVRYMV 390
Query: 134 LCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV 193
LCRVI+G ME++ QF E+D+GVD++ P Y VW+ MN+HIF +++V F++
Sbjct: 391 LCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKL 450
Query: 194 V-------------------------------------------CFSASAIKTTSPWKGI 210
+S + SPW
Sbjct: 451 SNLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNQGARGSGSANSVGSSTTRPKSPWMPF 510
Query: 211 QTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNEL 270
TL A S + + M L+ Y L+++K+T +FV L+ + GD LL + N+
Sbjct: 511 PTLFAAISHKVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQP 570
Query: 271 RSARNAGGSR 280
+S G R
Sbjct: 571 KSKEIPGSIR 580
>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis
thaliana GN=SRO1 PE=1 SV=2
Length = 568
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 9/199 (4%)
Query: 2 VKIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKK 61
VK E +++ VK+ F G L + +L SS IA+ARL F+ A+ + KK
Sbjct: 262 VKPAEEELDKDAVKQMFALGAATLG---HVESLDVYQFSSEIAKARLSLFQKQAD-ITKK 317
Query: 62 CGGNANIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLS 121
G+ANIR AW A ++ ++ ++ HG G GA M+G GV N
Sbjct: 318 HRGDANIRYAWVPAKKEVLSAVMMHGL---GVGGAFIKKSMYGVGVHA--ANCPYFSARY 372
Query: 122 SESDEKGLRHILLCRVILGKMEVIPRGSKQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNS 181
+ D+ G+RH++LCRVI+G ME + + Q+ E+D+GVD++ P Y +W+ MN+
Sbjct: 373 CDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNT 432
Query: 182 HIFVDYIVSFRVVCFSASA 200
HI+ +++VSF++ +A
Sbjct: 433 HIYPEFVVSFKLSIPNAEG 451
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271
LHP K N L+ +K+ S ++ ++ + + LL T+ Y+NEL+
Sbjct: 34 LHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELK 84
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271
LHP K N L+ +K+ S ++ ++ + + LL T+ Y+NEL+
Sbjct: 34 LHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELK 84
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271
LHP K N L+ +K+ S ++ ++ + + LL T+ Y+NEL+
Sbjct: 34 LHPFDAGKWGKVINFLKEEKLLSDGMLVEAREASEEDLLVVHTRRYLNELK 84
>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1
SV=2
Length = 442
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 115 SINGVLSSESDEKGLRHILLCRVILGKMEVIPRGSK---------QFHPTSLEFDSGVDN 165
S G++S S+E GL+ ILLC ++G + +P S+ PTS++ D+
Sbjct: 156 SSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDD 215
Query: 166 LCKP 169
L P
Sbjct: 216 LISP 219
>sp|Q27606|CP4E2_DROME Cytochrome P450 4e2 OS=Drosophila melanogaster GN=Cyp4e2 PE=2 SV=2
Length = 526
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 173 TVWSCYMNSHIFVDYIVSFRVVCFSASAIKTTSPWKGIQTLMAIFSRFLHPSKMALLAKY 232
T + + S ++++I+S + + + + T PW G+ L + S++ KM A +
Sbjct: 77 TYSNVLVTSSKYLEFILSSQTLITKSDIYQLTHPWLGLGLLTSTGSKWHKHRKMITPAFH 136
Query: 233 YNDLQN----QKITSQQFVMNLKQV-TGDKLL 259
+N LQ+ S +F+ +LK V GD +
Sbjct: 137 FNILQDFHEVMNENSTKFIKHLKTVAAGDNIF 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,485,537
Number of Sequences: 539616
Number of extensions: 3900334
Number of successful extensions: 6916
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6894
Number of HSP's gapped (non-prelim): 14
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)