Query 022829
Match_columns 291
No_of_seqs 148 out of 337
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01438 tankyrase_like Tankyra 100.0 5.3E-39 1.2E-43 291.0 17.7 177 1-194 18-221 (223)
2 cd01439 TCCD_inducible_PARP_li 100.0 1.5E-39 3.2E-44 269.9 10.6 114 70-191 1-121 (121)
3 PF00644 PARP: Poly(ADP-ribose 100.0 5.6E-35 1.2E-39 259.7 14.8 172 1-193 5-206 (206)
4 PF12174 RST: RCD1-SRO-TAF4 (R 100.0 8.7E-30 1.9E-34 193.2 8.7 68 202-269 3-70 (70)
5 cd01437 parp_like Poly(ADP-rib 99.9 4.6E-25 1E-29 212.0 13.5 173 1-192 140-347 (347)
6 cd01341 ADP_ribosyl ADP_ribosy 99.8 2.5E-20 5.4E-25 157.5 7.5 113 70-187 1-137 (137)
7 PLN03124 poly [ADP-ribose] pol 99.7 5.6E-16 1.2E-20 158.8 15.0 126 1-142 430-558 (643)
8 PLN03123 poly [ADP-ribose] pol 99.6 2E-14 4.4E-19 153.4 13.2 127 1-142 769-898 (981)
9 PLN03122 Poly [ADP-ribose] pol 99.5 3.8E-13 8.2E-18 141.3 11.9 174 1-194 593-805 (815)
10 KOG1037 NAD+ ADP-ribosyltransf 97.5 6.2E-05 1.3E-09 76.9 2.8 125 3-142 313-439 (531)
11 PF12767 SAGA-Tad1: Transcript 92.1 0.67 1.5E-05 42.9 7.9 71 204-274 5-82 (252)
12 KOG0034 Ca2+/calmodulin-depend 89.8 0.71 1.5E-05 41.4 5.6 59 208-266 84-152 (187)
13 PF12509 DUF3715: Protein of u 85.5 2.7 5.8E-05 36.9 6.4 115 43-164 2-125 (165)
14 PF13833 EF-hand_8: EF-hand do 78.0 2.8 6.1E-05 28.8 3.1 45 208-252 5-53 (54)
15 PF02671 PAH: Paired amphipath 77.9 5.8 0.00013 27.1 4.7 34 223-256 1-34 (47)
16 PRK00819 RNA 2'-phosphotransfe 71.6 4.5 9.7E-05 36.1 3.5 34 68-112 94-127 (179)
17 PF13151 DUF3990: Protein of u 67.5 2.4 5.2E-05 36.8 0.9 26 227-252 108-133 (154)
18 PF08349 DUF1722: Protein of u 65.9 17 0.00036 29.8 5.5 47 209-255 54-100 (117)
19 PF13405 EF-hand_6: EF-hand do 59.8 6.4 0.00014 24.4 1.6 28 225-252 1-28 (31)
20 PHA01748 hypothetical protein 58.5 12 0.00026 27.4 3.1 53 216-271 4-57 (60)
21 PF15633 Tox-ART-HYD1: HYD1 si 56.6 7.5 0.00016 31.5 1.8 39 71-112 1-39 (96)
22 cd00383 trans_reg_C Effector d 56.2 14 0.00031 27.8 3.3 51 221-272 24-77 (95)
23 smart00862 Trans_reg_C Transcr 53.5 22 0.00047 25.7 3.8 52 220-272 5-60 (78)
24 cd05031 S-100A10_like S-100A10 51.5 45 0.00097 25.7 5.5 31 226-256 7-42 (94)
25 PTZ00184 calmodulin; Provision 51.1 26 0.00057 27.9 4.3 58 206-264 62-127 (149)
26 PF09851 SHOCT: Short C-termin 50.3 40 0.00087 21.4 4.1 28 227-254 3-30 (31)
27 smart00027 EH Eps15 homology d 48.7 32 0.0007 26.6 4.3 47 207-253 26-73 (96)
28 smart00027 EH Eps15 homology d 48.2 50 0.0011 25.5 5.3 44 221-265 4-52 (96)
29 COG1859 KptA RNA:NAD 2'-phosph 47.2 15 0.00032 33.9 2.3 25 67-91 119-143 (211)
30 PF01885 PTS_2-RNA: RNA 2'-pho 47.1 15 0.00031 32.9 2.3 34 68-112 105-138 (186)
31 PF09454 Vps23_core: Vps23 cor 46.1 84 0.0018 23.5 5.9 37 227-263 26-62 (65)
32 cd00213 S-100 S-100: S-100 dom 45.4 87 0.0019 23.5 6.2 32 224-255 5-41 (88)
33 PF00036 EF-hand_1: EF hand; 41.8 13 0.00029 23.1 0.9 27 226-252 2-28 (29)
34 PF00486 Trans_reg_C: Transcri 41.7 28 0.00061 25.2 2.8 53 220-273 5-60 (77)
35 cd00247 Endostatin-like Endost 41.2 28 0.0006 31.0 3.0 59 67-135 109-167 (171)
36 PTZ00315 2'-phosphotransferase 40.0 29 0.00062 36.5 3.4 22 69-90 477-499 (582)
37 PF13720 Acetyltransf_11: Udp 39.6 1.4E+02 0.0031 23.0 6.6 53 216-268 23-76 (83)
38 cd05025 S-100A1 S-100A1: S-100 39.1 60 0.0013 24.8 4.4 32 226-257 11-44 (92)
39 cd05030 calgranulins Calgranul 38.9 1.2E+02 0.0026 23.2 6.1 34 225-258 6-44 (88)
40 PTZ00183 centrin; Provisional 36.9 78 0.0017 25.6 5.0 33 221-253 87-119 (158)
41 PRK10766 DNA-binding transcrip 35.7 39 0.00084 28.7 3.1 51 220-271 159-212 (221)
42 PRK02998 prsA peptidylprolyl i 34.3 50 0.0011 31.0 3.9 30 234-263 29-58 (283)
43 PRK10701 DNA-binding transcrip 34.3 46 0.001 28.8 3.5 50 221-271 162-214 (240)
44 PRK12461 UDP-N-acetylglucosami 34.0 1.7E+02 0.0037 27.2 7.3 56 212-267 191-247 (255)
45 cd00051 EFh EF-hand, calcium b 33.2 46 0.001 21.5 2.6 14 237-250 49-62 (63)
46 PRK09108 type III secretion sy 32.9 98 0.0021 30.5 5.7 59 213-271 189-247 (353)
47 cd00052 EH Eps15 homology doma 32.7 1E+02 0.0022 21.2 4.4 47 208-254 16-63 (67)
48 smart00054 EFh EF-hand, calciu 30.8 29 0.00062 18.9 1.1 24 229-252 5-28 (29)
49 PHA02629 A-type inclusion body 30.2 25 0.00055 25.6 0.9 28 264-291 6-35 (61)
50 TIGR00328 flhB flagellar biosy 29.1 1.3E+02 0.0027 29.7 5.8 59 213-271 187-245 (347)
51 PRK09468 ompR osmolarity respo 29.1 58 0.0012 28.1 3.2 50 221-271 162-214 (239)
52 cd01436 Dipth_tox_like Mono-AD 28.7 67 0.0015 27.4 3.3 53 71-127 2-54 (147)
53 PRK10167 hypothetical protein; 28.7 1.4E+02 0.0031 26.3 5.6 47 209-255 95-141 (169)
54 PRK12557 H(2)-dependent methyl 28.7 83 0.0018 30.6 4.4 58 212-270 272-339 (342)
55 PRK05702 flhB flagellar biosyn 28.2 1.3E+02 0.0029 29.6 5.8 58 214-271 195-252 (359)
56 PRK12721 secretion system appa 27.8 1.3E+02 0.0029 29.5 5.7 57 215-271 189-245 (349)
57 PRK06298 type III secretion sy 27.5 1.4E+02 0.003 29.5 5.7 60 212-271 187-246 (356)
58 cd05029 S-100A6 S-100A6: S-100 27.4 1.1E+02 0.0025 23.6 4.2 48 207-254 28-81 (88)
59 PRK03095 prsA peptidylprolyl i 27.2 77 0.0017 29.8 3.8 31 234-264 28-58 (287)
60 PTZ00183 centrin; Provisional 27.2 73 0.0016 25.8 3.3 46 207-252 106-154 (158)
61 cd05030 calgranulins Calgranul 27.2 84 0.0018 24.1 3.5 49 205-253 24-80 (88)
62 TIGR01404 FlhB_rel_III type II 26.5 1.5E+02 0.0032 29.0 5.8 57 215-271 188-244 (342)
63 PTZ00184 calmodulin; Provision 26.3 1.8E+02 0.0039 23.0 5.4 47 207-253 27-76 (149)
64 cd00171 Sec7 Sec7 domain; Doma 25.6 79 0.0017 27.9 3.4 32 238-269 147-183 (185)
65 PRK11173 two-component respons 25.1 80 0.0017 27.3 3.3 51 220-271 160-213 (237)
66 PRK12772 bifunctional flagella 24.9 1.5E+02 0.0032 31.4 5.7 53 219-271 456-508 (609)
67 cd05023 S-100A11 S-100A11: S-1 24.9 90 0.0019 24.3 3.2 48 207-254 27-82 (89)
68 cd05022 S-100A13 S-100A13: S-1 24.7 1.1E+02 0.0024 23.9 3.8 49 207-255 25-78 (89)
69 PRK08156 type III secretion sy 23.6 1.8E+02 0.0039 28.8 5.7 59 213-271 182-240 (361)
70 COG5126 FRQ1 Ca2+-binding prot 23.6 1.3E+02 0.0029 26.4 4.4 66 205-271 69-138 (160)
71 COG3710 CadC DNA-binding winge 23.3 78 0.0017 27.2 2.8 51 220-271 31-83 (148)
72 PF12763 EF-hand_4: Cytoskelet 22.8 70 0.0015 25.9 2.3 78 203-282 21-99 (104)
73 PRK12468 flhB flagellar biosyn 22.8 1.9E+02 0.0041 28.9 5.8 58 214-271 195-252 (386)
74 cd08533 SAM_PNT-ETS-1,2 Steril 22.6 57 0.0012 24.9 1.7 29 239-268 41-69 (71)
75 PRK13109 flhB flagellar biosyn 22.3 2E+02 0.0043 28.4 5.8 60 212-271 195-254 (358)
76 cd08538 SAM_PNT-ESE-2-like Ste 20.5 98 0.0021 24.1 2.6 27 239-267 46-72 (78)
77 PRK12773 flhB flagellar biosyn 20.4 2.1E+02 0.0045 30.6 5.7 54 218-271 490-543 (646)
78 cd00236 FinO_conjug_rep FinO b 20.4 1.4E+02 0.003 26.0 3.7 50 210-261 47-100 (146)
No 1
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=5.3e-39 Score=290.96 Aligned_cols=177 Identities=19% Similarity=0.299 Sum_probs=143.4
Q ss_pred CcccCCCChhHHHHHHHHHhccCCC---------CCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceee
Q 022829 1 MVKIEEGDMNHYLVKKCFLSGMGPL---------AADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPA 71 (291)
Q Consensus 1 lv~L~~~s~ey~~V~~~F~~~m~~~---------~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~l 71 (291)
||+|.+++.||..|++.|.+|+++. .+.+.|++|+|| ||+.+|+.|+.+++.|.+++++..||+.|
T Consensus 18 ~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RI-----QN~~Lw~~y~~kk~~~~~~~~~~~ne~~L 92 (223)
T cd01438 18 LLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKV-----VNKKLRERYCHRQKEIAEENHNHHNERML 92 (223)
T ss_pred EEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEec-----CCHHHHHHHHHHHHHHHHhhCCCcceEEE
Confidence 6899999999999999999998752 235799999999 89999999999999999998888999999
Q ss_pred eecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCC---------CCCC-----cEEEEEEEE
Q 022829 72 WFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSES---------DEKG-----LRHILLCRV 137 (291)
Q Consensus 72 whGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~---------d~~G-----~r~m~LcRV 137 (291)
||||+ .++.||.+||+++.+ + +|++||+|+|||.+ + .+|++||.. +.++ .+.||||||
T Consensus 93 fHGt~--~~~~I~~~GFd~r~~---~-~g~~fGkGiYFA~~-a-skS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrV 164 (223)
T cd01438 93 FHGSP--FINAIIHKGFDERHA---Y-IGGMFGAGIYFAEN-S-SKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRV 164 (223)
T ss_pred eecCc--chhHHHHhCCCcccc---c-cCceeeeeeeeccc-h-hhhccccccccccccCcccccccccccceeEEEEEE
Confidence 99996 578999999999865 2 58999999999984 3 467898743 2222 478999999
Q ss_pred eeccceecCCCCCCCCCCCCCcccccCCCCC----CcEEEEeecCCCcceeeceEEEEEec
Q 022829 138 ILGKMEVIPRGSKQFHPTSLEFDSGVDNLCK----PSRYTVWSCYMNSHIFVDYIVSFRVV 194 (291)
Q Consensus 138 L~G~~e~v~pgs~q~~pss~~YDS~VDn~~n----P~~fVVw~~~~ntqiyPEYlItfK~~ 194 (291)
++|++....+...-..| ...|||+++.... ..+||||+ ++||||||||+|+..
T Consensus 165 lLGk~~~~~~~~~~~~~-P~G~dSv~g~Ps~~~~~~~EfVVyd---~~Q~YPeYLI~y~~~ 221 (223)
T cd01438 165 TLGKSFLQFSAMKMAHA-PPGHHSVIGRPSVNGLAYAEYVIYR---GEQAYPEYLITYQIV 221 (223)
T ss_pred EecceeeccCCcccCCC-CCCCcceEcCCCCCCcccCEEEEEC---CCcEeeEEEEEEEee
Confidence 99997654433221112 2469999996432 36799999 679999999999864
No 2
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=100.00 E-value=1.5e-39 Score=269.93 Aligned_cols=114 Identities=27% Similarity=0.427 Sum_probs=101.8
Q ss_pred eeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCC--CcEEEEEEEEeeccceecCC
Q 022829 70 PAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEK--GLRHILLCRVILGKMEVIPR 147 (291)
Q Consensus 70 ~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~--G~r~m~LcRVL~G~~e~v~p 147 (291)
+|||||+.+.++.||.+||+++.. |.++++||+|+|||+. +.+|++||..+.+ |.++|||||||+|+++...|
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~---g~~~~~~G~GiYFA~~--~s~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~ 75 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFC---GKHGTMYGKGSYFAKN--ASYSHQYSKKSPKADGLKEMFLARVLTGDYTQGHP 75 (121)
T ss_pred CcccccChhhHHHHHHccCCCccC---CCCCCccCCeeecccC--hhhhhcccccCcCCCCcEEEEEEEEEecceecCCC
Confidence 489999999999999999999987 7789999999999994 4578999976664 99999999999999877655
Q ss_pred CC-----CCCCCCCCCcccccCCCCCCcEEEEeecCCCcceeeceEEEE
Q 022829 148 GS-----KQFHPTSLEFDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSF 191 (291)
Q Consensus 148 gs-----~q~~pss~~YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItf 191 (291)
+. ++..|+++.|||+|||+.||++||||+ ++||||||||||
T Consensus 76 ~~~~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~---~~q~yPeYlI~y 121 (121)
T cd01439 76 GYRRPPLKPSGVELDRYDSCVDNVSNPSIFVIFS---DVQAYPEYLITY 121 (121)
T ss_pred cccCCCCccCCCCCCCccceeCCCCCCCEEEEEe---CCccceeEEEEC
Confidence 44 667788899999999999999999999 479999999997
No 3
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=5.6e-35 Score=259.71 Aligned_cols=172 Identities=23% Similarity=0.381 Sum_probs=137.2
Q ss_pred CcccCCCChhHHHHHHHHHhccCCCCC-CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhh
Q 022829 1 MVKIEEGDMNHYLVKKCFLSGMGPLAA-DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDE 79 (291)
Q Consensus 1 lv~L~~~s~ey~~V~~~F~~~m~~~~~-~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~ 79 (291)
|+.|++++.||..|++.|.++|++... ...|.+|+|| +|..+|+.|+..++ ..|+++|||||+.+.
T Consensus 5 l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i-----~~~~~~~~f~~~~~--------~~n~~~L~HGt~~~~ 71 (206)
T PF00644_consen 5 LVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRI-----QNPSLWERFEEKKK--------EGNERLLFHGTSAEN 71 (206)
T ss_dssp EEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEE-----EEHHHHHHHHHHHH--------SSSEEEEEEEETGGG
T ss_pred EEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEE-----cChhHHHHHHHHHh--------cCCceEEeCCCChhh
Confidence 468999999999999999999986543 6899999999 78899999987766 457999999999999
Q ss_pred HHHHHhcCC--CCCCCCCCCCCCCccccceeeCCCCCccccccCCCC-CCCCcEEEEEEEEeeccceecCCCCC-CC---
Q 022829 80 INEIVCHGF--SQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSES-DEKGLRHILLCRVILGKMEVIPRGSK-QF--- 152 (291)
Q Consensus 80 v~~I~~~GF--~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~-d~~G~r~m~LcRVL~G~~e~v~pgs~-q~--- 152 (291)
+..|+.+|| +++.. +.+|.+||.|+|||++ +..|+.||.. +.+|.++||||||++|++..+..... ..
T Consensus 72 ~~~I~~~G~~~~~~~~---~~~g~~fG~GiYfs~~--~s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~~~~~~~ 146 (206)
T PF00644_consen 72 ICSILRNGFKIDPRKA---SRNGGMFGKGIYFSDN--SSKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNPMTSPPP 146 (206)
T ss_dssp HHHHHHHSS---TTTS---CGGCSTTSSSEEEBSS--HHHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCTGSSGCT
T ss_pred ccchhcCCCccCcccc---ccCCceeeeEEEeCcc--hhhhcccCCCccCCcceeeeEEEEEeccceeeccCcccccccC
Confidence 999999999 66655 6678999999999984 5678999998 89999999999999999543321111 00
Q ss_pred ---------------------CCCCCC-cccccCCCCCCcEEEEeecCCCcceeeceEEEEEe
Q 022829 153 ---------------------HPTSLE-FDSGVDNLCKPSRYTVWSCYMNSHIFVDYIVSFRV 193 (291)
Q Consensus 153 ---------------------~pss~~-YDS~VDn~~nP~~fVVw~~~~ntqiyPEYlItfK~ 193 (291)
-|.... .+..++...+|++||||+ +.|+||+|||+||.
T Consensus 147 g~~sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~---~~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 147 GYDSVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYD---NSQVYPEYLITYKF 206 (206)
T ss_dssp TESEEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESS---GGGEEEEEEEEEEE
T ss_pred CcceecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEc---ccceeeEEEEEEEC
Confidence 122221 122233348899999998 57999999999983
No 4
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=99.96 E-value=8.7e-30 Score=193.19 Aligned_cols=68 Identities=38% Similarity=0.681 Sum_probs=66.7
Q ss_pred CCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 022829 202 KTTSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNE 269 (291)
Q Consensus 202 ~~~sp~~~F~~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k 269 (291)
+|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||+||+++|+++|+|
T Consensus 3 ~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k 70 (70)
T PF12174_consen 3 RPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK 70 (70)
T ss_pred CCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 49999999999999999999999999999999999999999999999999999999999999999986
No 5
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=99.92 E-value=4.6e-25 Score=212.01 Aligned_cols=173 Identities=16% Similarity=0.250 Sum_probs=129.3
Q ss_pred CcccCCCChhHHHHHHHHHhccCCC-CCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChhh
Q 022829 1 MVKIEEGDMNHYLVKKCFLSGMGPL-AADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRDE 79 (291)
Q Consensus 1 lv~L~~~s~ey~~V~~~F~~~m~~~-~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~~ 79 (291)
++.|+++|.||+.|++.|..|.+.. ....+|..|.|| ++...|+.|+.++ ...|+++|||||+...
T Consensus 140 i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i-----~r~~e~~~F~~~~--------~~~n~~lLwHGsr~~n 206 (347)
T cd01437 140 IEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRV-----EREGETDRFKPFK--------KLGNRKLLWHGSRLTN 206 (347)
T ss_pred EEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEe-----cCCCchhhhHHhh--------ccCCeEEEEcCCChhh
Confidence 4679999999999999999998752 235899999999 5567778886411 3578999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCC-CCcEEEEEEEEeeccceecCCCCCCCCCCCCC
Q 022829 80 INEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDE-KGLRHILLCRVILGKMEVIPRGSKQFHPTSLE 158 (291)
Q Consensus 80 v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~-~G~r~m~LcRVL~G~~e~v~pgs~q~~pss~~ 158 (291)
+..|+.+||+.... .+..+|.+||+|+|||.. +..|++||.++. +|.++||||+|++|++...........-...-
T Consensus 207 ~~~Il~~Gl~~~~~-~~~~~g~mfGkGIYFAd~--~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g 283 (347)
T cd01437 207 FVGILSQGLRIAPP-EAPVTGYMFGKGIYFADM--FSKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKG 283 (347)
T ss_pred HHHHHhcCCCcCcc-ccccCCccccceEeecCc--hHhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCC
Confidence 99999999998642 125678899999999984 457899998876 78999999999999975432211000101234
Q ss_pred cccccC---------------------------------CCCCCcEEEEeecCCCcceeeceEEEEE
Q 022829 159 FDSGVD---------------------------------NLCKPSRYTVWSCYMNSHIFVDYIVSFR 192 (291)
Q Consensus 159 YDS~VD---------------------------------n~~nP~~fVVw~~~~ntqiyPEYlItfK 192 (291)
|||+.- ..-.-..||||+ .+||.+.|||.+|
T Consensus 284 ~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd---~~Qir~rYLv~vk 347 (347)
T cd01437 284 KHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYD---VAQVRLKYLLEVK 347 (347)
T ss_pred ceeeEeccCCCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeec---hhHEEEEEEEEeC
Confidence 444211 011125699999 5799999999986
No 6
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.82 E-value=2.5e-20 Score=157.51 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=91.3
Q ss_pred eeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCC---------------CcEEEEE
Q 022829 70 PAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEK---------------GLRHILL 134 (291)
Q Consensus 70 ~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~---------------G~r~m~L 134 (291)
+|||||+.+.+..|+.+||+++... +..++.+||+|+|||.. +..|+.||..+.+ +.+.|||
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~-~~~~g~~~G~GiYfa~~--~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl 77 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYG-VLLNGGMFGKGIYSAPN--ISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFL 77 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCcc-ccccccccCceeeecCC--hHHhhhhhcccCCcccccccccccccccccceeEE
Confidence 5899999999999999999998651 13358999999999984 4468899998876 4567999
Q ss_pred EEEeecccee-----cCCCCCCCCCCCCCccccc----CCCCCCcEEEEeecCCCcceeece
Q 022829 135 CRVILGKMEV-----IPRGSKQFHPTSLEFDSGV----DNLCKPSRYTVWSCYMNSHIFVDY 187 (291)
Q Consensus 135 cRVL~G~~e~-----v~pgs~q~~pss~~YDS~V----Dn~~nP~~fVVw~~~~ntqiyPEY 187 (291)
++|++|.... .+|..+...|..+.||++| |+..+|.+||||+.. +|+||||
T Consensus 78 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~--~Qv~~~Y 137 (137)
T cd01341 78 TLGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPY--SQVSIRY 137 (137)
T ss_pred EEEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecch--hhceecC
Confidence 9999987544 3344444455668899999 699999999999941 6999998
No 7
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.68 E-value=5.6e-16 Score=158.76 Aligned_cols=126 Identities=20% Similarity=0.277 Sum_probs=96.5
Q ss_pred CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829 1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD 78 (291)
Q Consensus 1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~ 78 (291)
|..|+++|.||..|++.+..|-+..+. ..+|+.|.||... ....||+.|. ...|.++|||||...
T Consensus 430 i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~--~E~~rF~~~~-----------~~~Nr~LLWHGSr~~ 496 (643)
T PLN03124 430 LEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSRE--GEDERFQKFS-----------STKNRMLLWHGSRLT 496 (643)
T ss_pred eEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccc--cchhhHHHhh-----------ccCCeEEEEcCCCcc
Confidence 357899999999999999888655332 4788999999333 2233444331 235889999999999
Q ss_pred hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCC-CCcEEEEEEEEeeccc
Q 022829 79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDE-KGLRHILLCRVILGKM 142 (291)
Q Consensus 79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~-~G~r~m~LcRVL~G~~ 142 (291)
.+..|+.+|+.-... .+..+|.+||+|+|||.. +..|++||.+.. ++...||||.|.+|++
T Consensus 497 N~~gILs~GLriaPp-ea~~~GymfGkGIYFAd~--~skSa~Yc~~~~~~~~g~llLceVaLG~~ 558 (643)
T PLN03124 497 NWTGILSQGLRIAPP-EAPSTGYMFGKGVYFADM--FSKSANYCYASAANPDGVLLLCEVALGDM 558 (643)
T ss_pred cHHHHHhccCccCCc-ccccccccccceeEecch--hhhhhhhhhccCCCCeeEEEEEEEecCCc
Confidence 999999999974311 125678999999999973 568899997653 5678999999999985
No 8
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.56 E-value=2e-14 Score=153.35 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=96.7
Q ss_pred CcccCCCChhHHHHHHHHHhccCCCCC--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecCChh
Q 022829 1 MVKIEEGDMNHYLVKKCFLSGMGPLAA--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGASRD 78 (291)
Q Consensus 1 lv~L~~~s~ey~~V~~~F~~~m~~~~~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGts~~ 78 (291)
|..|+++|.||..|++.+..|=++.+. ..+|+.|.||... ....||+.|. . ...|.+.|||||...
T Consensus 769 i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~--gE~~rf~~~~---~-------~~~Nr~LLwHGSr~~ 836 (981)
T PLN03123 769 ISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLERE--GEFDKYAPYK---E-------KLKNRMLLWHGSRLT 836 (981)
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEeccc--ccccchhhHh---h-------cCCCceEEEcCCCcc
Confidence 357899999999999999988654332 3569999999332 2224444332 1 235889999999999
Q ss_pred hHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccc
Q 022829 79 EINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKM 142 (291)
Q Consensus 79 ~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~ 142 (291)
....|+.+||.-... .|..+|.|||+|||||. .+..|++||-+. .++...||||.|.+|++
T Consensus 837 N~~gILs~GLriaPp-eap~tGymfGkGIYFAD--~~SKSanYc~~~~~~~~g~llLceVaLG~~ 898 (981)
T PLN03123 837 NFVGILSQGLRIAPP-EAPATGYMFGKGVYFAD--LVSKSAQYCYTDRKNPVGLMLLSEVALGEI 898 (981)
T ss_pred cHHHHhhccCccCCc-cccccCccccceeEecc--hhhhhhhhhcccCCCCceEEEEEEEecCCh
Confidence 999999999975311 12668999999999996 356789999765 46788999999999996
No 9
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.45 E-value=3.8e-13 Score=141.32 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=120.3
Q ss_pred CcccCCCChhHHHHHHHHHhccCCCC---C--CccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcCCCCcceeeeecC
Q 022829 1 MVKIEEGDMNHYLVKKCFLSGMGPLA---A--DTRILALHKNSCSSLIARARLDSFKIFANAVAKKCGGNANIRPAWFGA 75 (291)
Q Consensus 1 lv~L~~~s~ey~~V~~~F~~~m~~~~---~--~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~gg~~Ner~lwhGt 75 (291)
|..|+++|.||..|++.+..|-++.+ . ..+|+.|.||.... ..||+.|. ...|-+.||||+
T Consensus 593 i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~g---e~rf~~~~-----------~l~NR~LLWHGS 658 (815)
T PLN03122 593 ISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSA---GPSLDEIK-----------KLPNKVLLWCGT 658 (815)
T ss_pred EEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCc---cccchhhc-----------CCCCceEEeccc
Confidence 45789999999999999999876533 1 35688888883331 23443221 235778999999
Q ss_pred ChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccc--eecCCC----
Q 022829 76 SRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKM--EVIPRG---- 148 (291)
Q Consensus 76 s~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~--e~v~pg---- 148 (291)
.......|+++|+--... .|+.+|.|||+|||||. .+..|++||-.. .+++-.||||-|.+|++ |...+.
T Consensus 659 R~tN~~gILsqGLRIAPP-EAPvtGYMFGKGIYFAD--~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~ 735 (815)
T PLN03122 659 RSSNLLRHLAKGFLPAVC-SLPVPGYMFGKAIVCSD--AAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVK 735 (815)
T ss_pred hhhhHHHHhhCCCccCCc-ccCCCCCccCCeeEecc--hhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhh
Confidence 999999999999975321 14788999999999996 456889999654 45667899999999995 433221
Q ss_pred -------------CCCCCCCCC-Ccc------------ccc-CCCCCCcEEEEeecCCCcceeeceEEEEEec
Q 022829 149 -------------SKQFHPTSL-EFD------------SGV-DNLCKPSRYTVWSCYMNSHIFVDYIVSFRVV 194 (291)
Q Consensus 149 -------------s~q~~pss~-~YD------------S~V-Dn~~nP~~fVVw~~~~ntqiyPEYlItfK~~ 194 (291)
.....|+.. ..+ |.+ |.--.-..||||+. +||--.||+..|..
T Consensus 736 ~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDv---aQvrirYL~~vkf~ 805 (815)
T PLN03122 736 SYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDP---KQVSIRFLVGVKYE 805 (815)
T ss_pred ccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEch---hHEEEEEEEEEEee
Confidence 111122211 111 111 11223557999995 69999999998864
No 10
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=6.2e-05 Score=76.88 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=85.3
Q ss_pred ccCCCChhHHHHHHHHHhccCCCCCCccEEEEEecCCCchhHHHHHHHHHHHHHHHHHHcC-CCCcceeeeecCChhhHH
Q 022829 3 KIEEGDMNHYLVKKCFLSGMGPLAADTRILALHKNSCSSLIARARLDSFKIFANAVAKKCG-GNANIRPAWFGASRDEIN 81 (291)
Q Consensus 3 ~L~~~s~ey~~V~~~F~~~m~~~~~~~~Iv~I~Ri~~~~~~n~~r~~~F~~~~~~~~~k~g-g~~Ner~lwhGts~~~v~ 81 (291)
.++.++.||..|.+.-..+-..-.+ ...+.|..+ |++=+ +-+.+..... ...|-+.+|||+....+.
T Consensus 313 ~~~~~~~e~kmi~~~~~~~~~~~~~-~~~~~~~~l----------~k~~~-~~e~~~~~~~~~~~~r~llw~gs~~~n~a 380 (531)
T KOG1037|consen 313 KLDKDSEEFKMIAQYVEKTHAKTST-VKVVQIADL----------KKVNE-KNEADRKVDISELINRQLLWHGSRFGNLA 380 (531)
T ss_pred cccccchhHHHHHHHHHhhccccCc-cCceeehhH----------HHhhh-cccccccccCcccccccchhcccceeeee
Confidence 4667788999999988876433222 233334444 11111 1122222221 356778899999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCC-CCCcEEEEEEEEeeccc
Q 022829 82 EIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESD-EKGLRHILLCRVILGKM 142 (291)
Q Consensus 82 ~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d-~~G~r~m~LcRVL~G~~ 142 (291)
.|..+|+--...+ +...+.+||+|+|||.. +..|++||-.- .....+|++|-|.+|+.
T Consensus 381 ~~l~~g~~~~~~~-~~~~g~~~gkgiyfa~~--~sks~~y~~~~~~k~~~~ll~~~~alg~~ 439 (531)
T KOG1037|consen 381 GILSPGLRLAPSE-APVTGYMFGKGIYFADA--ASKSANYCVTMKGKPTGHLLLCDVALGKE 439 (531)
T ss_pred ccccCCceecCCC-CCceeeccccceEeeee--cccccccccccccCchhhhhhhhhhccch
Confidence 9999998754321 14568999999999974 55788998665 66788999999999984
No 11
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=92.09 E-value=0.67 Score=42.92 Aligned_cols=71 Identities=11% Similarity=0.258 Sum_probs=62.1
Q ss_pred CCCcccHHHHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh-h------HHHHHHHHHHhhcccccc
Q 022829 204 TSPWKGIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG-D------KLLFTVTKFYMNELRSAR 274 (291)
Q Consensus 204 ~sp~~~F~~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG-D------~lL~~~ik~~q~k~~~~~ 274 (291)
..+-+-...|-..|.+.|.+++...=..+...|=.+||||+||-+.++.+.| | ++|.+++.+.+.+.||..
T Consensus 5 ~~~Ridl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na~~~~p~~~ 82 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNALAKSPPPS 82 (252)
T ss_pred cccccCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 3445667889999999999999999999999999999999999999999998 4 479999999987877664
No 12
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=89.85 E-value=0.71 Score=41.44 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=44.9
Q ss_pred ccHHH---HHHHHhccCChh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh------hHHHHHHHHHH
Q 022829 208 KGIQT---LMAIFSRFLHPS-KMALLAKYYNDLQNQKITSQQFVMNLKQVTG------DKLLFTVTKFY 266 (291)
Q Consensus 208 ~~F~~---L~~~l~~~l~~~-~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG------D~lL~~~ik~~ 266 (291)
+.|.. ++++.++.-++. ++....+.|+-=+.|.|+|+||.+.|+..+| |.++..++-+.
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t 152 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKT 152 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 66555 455555555555 8999999999999999999999999999999 44555544443
No 13
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length.
Probab=85.47 E-value=2.7 Score=36.93 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHcC--CCCcceeeeecCCh-hhHHHHHhcCCCCCCCCCCCCCCCcccc---ceeeCCCCCcc
Q 022829 43 IARARLDSFKIFANAVAKKCG--GNANIRPAWFGASR-DEINEIVCHGFSQCGGDGARKLGPMHGF---GVQLLPINSSI 116 (291)
Q Consensus 43 ~n~~r~~~F~~~~~~~~~k~g--g~~Ner~lwhGts~-~~v~~I~~~GF~~~~~~~~g~~~~~yG~---GvYfA~~~~~~ 116 (291)
.|.++=..|-...+.|..... ..--|.+.|+-... ..+..||..|...+.. .++..|+ |+|+... +-
T Consensus 2 ~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~~-----k~~~Lg~ps~gv~~~~~--~D 74 (165)
T PF12509_consen 2 HNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGNQ-----KGTILGKPSMGVYLSRH--SD 74 (165)
T ss_pred CCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhcccccccc-----cccccCCCCCCcccccC--Cc
Confidence 355677778777777655432 13336677877755 7889999999986432 3455666 8999863 21
Q ss_pred ccccCCCCCCCCcEEEEEEEEeeccceecCCCC---CCCCCCCCCcccccC
Q 022829 117 NGVLSSESDEKGLRHILLCRVILGKMEVIPRGS---KQFHPTSLEFDSGVD 164 (291)
Q Consensus 117 ~s~~ys~~d~~G~r~m~LcRVL~G~~e~v~pgs---~q~~pss~~YDS~VD 164 (291)
.............-.+++.+|+-|++..+.+.+ +.+-++...||.-|-
T Consensus 75 ~~~~~~~~~~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~ 125 (165)
T PF12509_consen 75 LLESQPFICSSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVS 125 (165)
T ss_pred hhhcchhhhcCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhh
Confidence 122211111112236999999999998776655 555666778998763
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=77.98 E-value=2.8 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=37.3
Q ss_pred ccHHHHHHHHhc---c-CChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 022829 208 KGIQTLMAIFSR---F-LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ 252 (291)
Q Consensus 208 ~~F~~L~~~l~~---~-l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~ 252 (291)
|+...|..+|++ . +++.+...|...++.=+.|+|+-+||+..|+.
T Consensus 5 i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 455666666644 4 89999999999999999999999999998864
No 15
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=77.91 E-value=5.8 Score=27.12 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 022829 223 PSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGD 256 (291)
Q Consensus 223 ~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD 256 (291)
|+..+...+....|++++|++.+++..+..+.+|
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~ 34 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRG 34 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 4566777888899999999999999999999973
No 16
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=71.59 E-value=4.5 Score=36.09 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=27.5
Q ss_pred ceeeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCC
Q 022829 68 IRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPI 112 (291)
Q Consensus 68 er~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~ 112 (291)
...|||||..+.++.|...|..+-.. .=||||++
T Consensus 94 P~~lyHGT~~~~~~~I~~~GL~pm~R-----------~hVHLs~~ 127 (179)
T PRK00819 94 PAVLYHGTSSEELDSILEEGLKPMKR-----------HYVHLSTD 127 (179)
T ss_pred CceeEeCCCHHHHHHHHHhCCCccCC-----------CeEEecCC
Confidence 35899999999999999999876543 13889874
No 17
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=67.53 E-value=2.4 Score=36.81 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Q 022829 227 ALLAKYYNDLQNQKITSQQFVMNLKQ 252 (291)
Q Consensus 227 ~~l~~~y~~~k~~kI~r~~~vk~lR~ 252 (291)
+.+....+.|..|.||++++++.||-
T Consensus 108 d~v~~~i~~y~~g~is~e~~~~~L~~ 133 (154)
T PF13151_consen 108 DRVFQTINLYINGEISKEQALERLKF 133 (154)
T ss_pred ChHHHHHHHHHcCCCCHHHHHHHhcc
Confidence 35667778889999999999999884
No 18
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=65.94 E-value=17 Score=29.79 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=42.6
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Q 022829 209 GIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG 255 (291)
Q Consensus 209 ~F~~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG 255 (291)
.+--++--+++.+++++.+.+...-++|++|+|+-...+..||..+-
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ 100 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLAR 100 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 46667778999999999999999999999999999999999998874
No 19
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=59.83 E-value=6.4 Score=24.36 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 022829 225 KMALLAKYYNDLQNQKITSQQFVMNLKQ 252 (291)
Q Consensus 225 ~~~~l~~~y~~~k~~kI~r~~~vk~lR~ 252 (291)
++..+.+.|+.=+.|+|+.+||...|++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3566778888888999999999999985
No 20
>PHA01748 hypothetical protein
Probab=58.50 E-value=12 Score=27.41 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=42.7
Q ss_pred HHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHhhhHHHHHHHHHHhhccc
Q 022829 216 IFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNL-KQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 216 ~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~l-R~IvGD~lL~~~ik~~q~k~~ 271 (291)
.++-.||++-++.|..+..+. .++|.++|+.. |..+.+.+...++.-++....
T Consensus 4 ~iSvrLp~el~~eld~~a~~~---g~~RSE~Ir~Ai~~~~~~~~~~~~~~~~~~~~~ 57 (60)
T PHA01748 4 VITFKIEEDLLELLDRYAIKH---GLNRSEAIRKAIEKMVKDELKKETVPVAKVEKI 57 (60)
T ss_pred EEEEECCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhcccchhhhhhe
Confidence 456678888888887777665 37999999875 999999999999999887654
No 21
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=56.60 E-value=7.5 Score=31.52 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=28.9
Q ss_pred eeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCC
Q 022829 71 AWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPI 112 (291)
Q Consensus 71 lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~ 112 (291)
++|=|+++-...|+..|=-+-.+. +-.. .||+|+||+..
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~--~p~~-~~~~g~y~t~~ 39 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKAN--NPKD-RFGQGQYFTDI 39 (96)
T ss_pred CccccchhhhHHhhccceEEeccC--Cccc-cCCCceEEEec
Confidence 578899999999999886552121 2223 79999999984
No 22
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=56.21 E-value=14 Score=27.79 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HhhhHHHHHHHHHHhhcccc
Q 022829 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ---VTGDKLLFTVTKFYMNELRS 272 (291)
Q Consensus 221 l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~---IvGD~lL~~~ik~~q~k~~~ 272 (291)
|.+.++.+|.-++ .-...-+||++++..+=. .+.+..|...|.++|.++..
T Consensus 24 Lt~~e~~lL~~L~-~~~~~~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 24 LTPKEFELLELLA-RNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred eCHHHHHHHHHHH-hCCCCcCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 5555555554443 345678999999999943 25789999999999999974
No 23
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=53.51 E-value=22 Score=25.72 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=39.2
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH----HhhhHHHHHHHHHHhhcccc
Q 022829 220 FLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ----VTGDKLLFTVTKFYMNELRS 272 (291)
Q Consensus 220 ~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~----IvGD~lL~~~ik~~q~k~~~ 272 (291)
.|++.++. |..++-+-+..-+|+++++..+-. .+.+..|...|.+||.++.+
T Consensus 5 ~Lt~~e~~-lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 5 KLTPKEFR-LLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred ecCHHHHH-HHHHHHhCCCCccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 35677777 445555556667999999998864 23478999999999999974
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=51.51 E-value=45 Score=25.74 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH-H----cCCCCHHHHHHHHHHHhhh
Q 022829 226 MALLAKYYNDL-Q----NQKITSQQFVMNLKQVTGD 256 (291)
Q Consensus 226 ~~~l~~~y~~~-k----~~kI~r~~~vk~lR~IvGD 256 (291)
+..|...|..| + .|+|+++||...|+...|+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~ 42 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE 42 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH
Confidence 55666677777 2 3799999999999986554
No 25
>PTZ00184 calmodulin; Provisional
Probab=51.11 E-value=26 Score=27.93 Aligned_cols=58 Identities=10% Similarity=0.171 Sum_probs=39.1
Q ss_pred CcccHHHHHHHHhccC----ChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh----hHHHHHHHH
Q 022829 206 PWKGIQTLMAIFSRFL----HPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG----DKLLFTVTK 264 (291)
Q Consensus 206 p~~~F~~L~~~l~~~l----~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG----D~lL~~~ik 264 (291)
-.++|..+..++...+ ...++..+.+.|+.-+.+.|++++|.+.++.+ | +..+..++.
T Consensus 62 g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~ 127 (149)
T PTZ00184 62 GTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIR 127 (149)
T ss_pred CcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHHHH
Confidence 3477777777776543 23455666666666688999999999999885 4 444444443
No 26
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=50.28 E-value=40 Score=21.41 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 022829 227 ALLAKYYNDLQNQKITSQQFVMNLKQVT 254 (291)
Q Consensus 227 ~~l~~~y~~~k~~kI~r~~~vk~lR~Iv 254 (291)
+.|.++-+.+.+|-||.+||-++-+.|.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4566777788899999999999988774
No 27
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=48.71 E-value=32 Score=26.60 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=25.9
Q ss_pred cccHHHHHHHHhcc-CChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 022829 207 WKGIQTLMAIFSRF-LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQV 253 (291)
Q Consensus 207 ~~~F~~L~~~l~~~-l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~I 253 (291)
.+++..|-.+++.. ++.++...+.+.++.-..+.|+.+||+..++.+
T Consensus 26 ~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 26 TVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred eEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 45555555554332 444555555555554456777777777665543
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=48.22 E-value=50 Score=25.53 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=31.8
Q ss_pred CChhHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHhh--hHHHHHHHHH
Q 022829 221 LHPSKMALLAKYYNDL---QNQKITSQQFVMNLKQVTG--DKLLFTVTKF 265 (291)
Q Consensus 221 l~~~~~~~l~~~y~~~---k~~kI~r~~~vk~lR~IvG--D~lL~~~ik~ 265 (291)
+++++...+...|..| +.|.|+.++|.+.||.. | +..+..+++.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~ev~~i~~~ 52 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-GLPQTLLAKIWNL 52 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 5667777777777777 56899999999999984 5 4444444443
No 29
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=47.17 E-value=15 Score=33.87 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.5
Q ss_pred cceeeeecCChhhHHHHHhcCCCCC
Q 022829 67 NIRPAWFGASRDEINEIVCHGFSQC 91 (291)
Q Consensus 67 Ner~lwhGts~~~v~~I~~~GF~~~ 91 (291)
.-..|+|||+.+.++.|+.+|.-.-
T Consensus 119 ~p~~LyhGTs~~~l~~I~~~Gi~Pm 143 (211)
T COG1859 119 PPAVLYHGTSPEFLPSILEEGLKPM 143 (211)
T ss_pred CCcEEEecCChhhhHHHHHhcCccc
Confidence 3467999999999999999997653
No 30
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=47.06 E-value=15 Score=32.88 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=22.3
Q ss_pred ceeeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCC
Q 022829 68 IRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPI 112 (291)
Q Consensus 68 er~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~ 112 (291)
...++|||+.+..+.|...|..+-. ..=||||++
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~m~-----------R~hVHls~~ 138 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKPMG-----------RNHVHLSTG 138 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B---S-----------SSSEEEES-
T ss_pred CCEEEEccchhhHHHHHHhCCCCCC-----------CCEEEEeec
Confidence 4799999999999999999976543 235899985
No 31
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.06 E-value=84 Score=23.47 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHH
Q 022829 227 ALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVT 263 (291)
Q Consensus 227 ~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~i 263 (291)
+.|...-+-|++++|+=+.|+|.+|...-++-+.-+.
T Consensus 26 Dtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 26 DTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778999999999999999999888776554
No 32
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=45.39 E-value=87 Score=23.48 Aligned_cols=32 Identities=3% Similarity=0.148 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhh
Q 022829 224 SKMALLAKYYNDLQN-----QKITSQQFVMNLKQVTG 255 (291)
Q Consensus 224 ~~~~~l~~~y~~~k~-----~kI~r~~~vk~lR~IvG 255 (291)
.++..+.+.|..|-+ |.|+.++|.+.++...|
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g 41 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELP 41 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh
Confidence 345556555655555 89999999999987555
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=41.80 E-value=13 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 022829 226 MALLAKYYNDLQNQKITSQQFVMNLKQ 252 (291)
Q Consensus 226 ~~~l~~~y~~~k~~kI~r~~~vk~lR~ 252 (291)
+..+.+.|+.=+.|+|+.+||+..|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345566666667899999999998875
No 34
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=41.71 E-value=28 Score=25.16 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=40.5
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HhhhHHHHHHHHHHhhccccc
Q 022829 220 FLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ---VTGDKLLFTVTKFYMNELRSA 273 (291)
Q Consensus 220 ~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~---IvGD~lL~~~ik~~q~k~~~~ 273 (291)
.|++.+..+|.-... -...-+||++++..+=. -+.+.-|...|.+||.++...
T Consensus 5 ~Lt~~e~~lL~~L~~-~~~~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~~ 60 (77)
T PF00486_consen 5 KLTPKEFRLLELLLR-NPGRVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLEDA 60 (77)
T ss_dssp ESSHHHHHHHHHHHH-TTTSEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHSS
T ss_pred ecCHHHHHHHHHHHh-CCCCCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhhc
Confidence 466777766665443 35566899999998865 356999999999999999854
No 35
>cd00247 Endostatin-like Endostatin-like domain; the angiogenesis inhibitor endostatin is a C-terminal fragment of collagen XV/XVIII, a proteoglycan/collagen found in vessel walls and basement membranes; this domain has a compact globular fold similar to that of C-type lectins; endostatin XVIII is monomeric and contains a heparin-binding epitope and zinc binding sites while endostatin XV is trimeric and contains neither of these sites; the generation of endostatin or endostatin-like collagen XV/XVIII fragments is catalyzed by proteolytic enzymes within the protease-sensitive hinge region of the C-terminal domain; endostatin inhibits endothelial cell migration in vitro and appears to be highly effective in murine in vivo studies
Probab=41.25 E-value=28 Score=31.02 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=31.5
Q ss_pred cceeeeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCCCcEEEEEE
Q 022829 67 NIRPAWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEKGLRHILLC 135 (291)
Q Consensus 67 Ner~lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~G~r~m~Lc 135 (291)
-+|..|||++..-......+==.|+.. .....|....|+. .....-..|| .+ .++++||
T Consensus 109 P~K~vWHGS~~~G~r~~~~yC~~Wrt~-----~~~~~G~As~L~~-g~ll~Q~~~s-C~---~~~iVLC 167 (171)
T cd00247 109 PQKMVWHGSDPNGRRLTDSYCEAWRTG-----DSAVTGQASSLSS-GKLLEQKAYS-CE---NKLIVLC 167 (171)
T ss_pred ccceeEecCCCCCcChhhchhhhhccC-----CcccccccccccC-CCcccccCCC-CC---CCeEEEE
Confidence 378999999886543333332245433 3445666666664 2222222232 11 2689988
No 36
>PTZ00315 2'-phosphotransferase; Provisional
Probab=39.96 E-value=29 Score=36.53 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=19.7
Q ss_pred eeeeecCChhhHHHHHhcC-CCC
Q 022829 69 RPAWFGASRDEINEIVCHG-FSQ 90 (291)
Q Consensus 69 r~lwhGts~~~v~~I~~~G-F~~ 90 (291)
..|||||..+.++.|...| ..+
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~ 499 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLST 499 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccc
Confidence 4799999999999999999 654
No 37
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.63 E-value=1.4e+02 Score=23.00 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh-hHHHHHHHHHHhh
Q 022829 216 IFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG-DKLLFTVTKFYMN 268 (291)
Q Consensus 216 ~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG-D~lL~~~ik~~q~ 268 (291)
+=+.-++++++..|.+.|..+-.+..+-+|-+..++...+ +..+...+..+.+
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~~~~v~~~~~Fi~~ 76 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPDSPEVREIVDFIRN 76 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCHHHHHHHHHHHh
Confidence 3356688999999999999999999999999999999766 7777777777763
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=39.11 E-value=60 Score=24.82 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=21.5
Q ss_pred HHHHHHHHH-HHHcC-CCCHHHHHHHHHHHhhhH
Q 022829 226 MALLAKYYN-DLQNQ-KITSQQFVMNLKQVTGDK 257 (291)
Q Consensus 226 ~~~l~~~y~-~~k~~-kI~r~~~vk~lR~IvGD~ 257 (291)
+..+.+.|+ .-..| +|++++|.+.||...|+.
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~ 44 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDF 44 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHH
Confidence 333444443 33566 599999999999866753
No 39
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=38.89 E-value=1.2e+02 Score=23.22 Aligned_cols=34 Identities=6% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHhhhHH
Q 022829 225 KMALLAKYYNDLQ-----NQKITSQQFVMNLKQVTGDKL 258 (291)
Q Consensus 225 ~~~~l~~~y~~~k-----~~kI~r~~~vk~lR~IvGD~l 258 (291)
.+..|...|.++- +++|++++|...|+...|+.+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~ 44 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL 44 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh
Confidence 4566677777776 458999999999988777643
No 40
>PTZ00183 centrin; Provisional
Probab=36.91 E-value=78 Score=25.63 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 022829 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQV 253 (291)
Q Consensus 221 l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~I 253 (291)
.+..++..+.+.|+.=..|.|++++|...++..
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 344566666667766677888888888888754
No 41
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=35.66 E-value=39 Score=28.69 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=38.8
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---hhhHHHHHHHHHHhhccc
Q 022829 220 FLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQV---TGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 220 ~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~I---vGD~lL~~~ik~~q~k~~ 271 (291)
.|.+.+.++|..... ....-+||+++.+.+-.. ..++.|...|.+||.|+.
T Consensus 159 ~Lt~~E~~ll~~l~~-~~~~v~sr~~l~~~v~~~~~~~~~~~~~~~i~~LR~Kl~ 212 (221)
T PRK10766 159 KLTKAEYELLVAFVT-NPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKLN 212 (221)
T ss_pred cCCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCC
Confidence 356777776654444 566667999999999753 347899999999999994
No 42
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=34.31 E-value=50 Score=31.02 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=25.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHhhhHHHHHHH
Q 022829 234 NDLQNQKITSQQFVMNLKQVTGDKLLFTVT 263 (291)
Q Consensus 234 ~~~k~~kI~r~~~vk~lR~IvGD~lL~~~i 263 (291)
...+.++||++||.+.|+.-.|.++|...|
T Consensus 29 ~~~~~g~it~~e~~~~~~~~~g~~~l~~li 58 (283)
T PRK02998 29 VTSKVGNITEKELSKELRQKYGESTLYQMV 58 (283)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999988887744
No 43
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=34.26 E-value=46 Score=28.83 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH--Hh-hhHHHHHHHHHHhhccc
Q 022829 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ--VT-GDKLLFTVTKFYMNELR 271 (291)
Q Consensus 221 l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~--Iv-GD~lL~~~ik~~q~k~~ 271 (291)
|.+.++.+|..+.. ....-+||+++.+.+.. .. +|+.|...|+++|.|+.
T Consensus 162 Lt~~E~~lL~~l~~-~~~~v~sr~~l~~~vw~~~~~~~~~~i~~~i~rlR~kl~ 214 (240)
T PRK10701 162 LSTADFDLLWELAT-HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLL 214 (240)
T ss_pred cCHHHHHHHHHHHh-CCCccCcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHhcc
Confidence 45666666643333 33344599999999975 33 48999999999999996
No 44
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=33.99 E-value=1.7e+02 Score=27.18 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh-hHHHHHHHHHHh
Q 022829 212 TLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG-DKLLFTVTKFYM 267 (291)
Q Consensus 212 ~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG-D~lL~~~ik~~q 267 (291)
.+.-+-++-.+++++..|.+.|+.+-....+.+|-++.++...+ +..+...+..++
T Consensus 191 n~vgl~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 247 (255)
T PRK12461 191 NAVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQFESPEVEELIDFIK 247 (255)
T ss_pred chhhhhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999887 444555666654
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=33.17 E-value=46 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=7.9
Q ss_pred HcCCCCHHHHHHHH
Q 022829 237 QNQKITSQQFVMNL 250 (291)
Q Consensus 237 k~~kI~r~~~vk~l 250 (291)
+.+.|+-+||+..+
T Consensus 49 ~~~~l~~~ef~~~~ 62 (63)
T cd00051 49 GDGKIDFEEFLELM 62 (63)
T ss_pred CCCeEeHHHHHHHh
Confidence 45566666665543
No 46
>PRK09108 type III secretion system protein HrcU; Validated
Probab=32.89 E-value=98 Score=30.46 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 213 LMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 213 L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
++..+--.+.-.-.|.+...|.-.|+-|+||+|.=+-.++.=||=.+++-++++|.+..
T Consensus 189 ~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re~a 247 (353)
T PRK09108 189 LAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARELA 247 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33344444556778899999999999999999999999999999999999999997765
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=32.69 E-value=1e+02 Score=21.24 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=27.9
Q ss_pred ccHHHHHHHHhc-cCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 022829 208 KGIQTLMAIFSR-FLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVT 254 (291)
Q Consensus 208 ~~F~~L~~~l~~-~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~Iv 254 (291)
++...|..++.. .++.+....+.+.++.=..++|+-+||+..+..|.
T Consensus 16 i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 16 ISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 344444444432 23555555555555555678888888888776653
No 48
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=30.79 E-value=29 Score=18.90 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Q 022829 229 LAKYYNDLQNQKITSQQFVMNLKQ 252 (291)
Q Consensus 229 l~~~y~~~k~~kI~r~~~vk~lR~ 252 (291)
+.+.++.-..+.|+.++|...++.
T Consensus 5 ~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 5 AFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHCCCCCCcEeHHHHHHHHHh
Confidence 444454445678999999888875
No 49
>PHA02629 A-type inclusion body protein; Provisional
Probab=30.21 E-value=25 Score=25.57 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=20.0
Q ss_pred HHHhhccccccccCCCCCc--cchhhhccC
Q 022829 264 KFYMNELRSARNAGGSRGV--NCQIERERI 291 (291)
Q Consensus 264 k~~q~k~~~~~~~~~~~~~--~~~~~~~~~ 291 (291)
..+..|+..--|+++.||- +|..||.+|
T Consensus 6 adle~klrd~gng~~gngc~s~c~ferk~i 35 (61)
T PHA02629 6 ADLEKKLRDGGNGNGGNGCTSSCEFERKII 35 (61)
T ss_pred HHHHHHHHccCCCCCCCCccchhHhhHHHH
Confidence 3445555555588888887 899999875
No 50
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=29.13 E-value=1.3e+02 Score=29.65 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=50.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 213 LMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 213 L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
++..+--.+.-.-.|.+...|.=.|+-|+||+|.=+-.++-=||=.+++-++++|.+..
T Consensus 187 ~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~~re~a 245 (347)
T TIGR00328 187 LILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREAA 245 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33344445567788899999999999999999999999999999999999999998765
No 51
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=29.09 E-value=58 Score=28.14 Aligned_cols=50 Identities=6% Similarity=0.072 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HhhhHHHHHHHHHHhhccc
Q 022829 221 LHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ---VTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 221 l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~---IvGD~lL~~~ik~~q~k~~ 271 (291)
|.+.+.++|.-+.. ....-+||+++.+.+.. ..+++.|...|.+||.|+.
T Consensus 162 Lt~~E~~lL~~L~~-~~~~~~sr~~l~~~vw~~~~~~~~~~l~~~i~~LR~kl~ 214 (239)
T PRK09468 162 LTTGEFAVLKALVS-HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLIE 214 (239)
T ss_pred cCHHHHHHHHHHHh-CCCccCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHhc
Confidence 56666666654443 56777899999999975 2458899999999999986
No 52
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=28.69 E-value=67 Score=27.44 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=35.3
Q ss_pred eeecCChhhHHHHHhcCCCCCCCCCCCCCCCccccceeeCCCCCccccccCCCCCCC
Q 022829 71 AWFGASRDEINEIVCHGFSQCGGDGARKLGPMHGFGVQLLPINSSINGVLSSESDEK 127 (291)
Q Consensus 71 lwhGts~~~v~~I~~~GF~~~~~~~~g~~~~~yG~GvYfA~~~~~~~s~~ys~~d~~ 127 (291)
.+|||....++.|.. |--.....+.+.+... =+|.|-|.+ ++.++.|+.-+++
T Consensus 2 ~YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~-W~GfY~a~~--~~~A~GYa~d~E~ 54 (147)
T cd01436 2 SYHGTKPGYVDSIQK-GIQKPKSGTQGNYDDD-WKGFYSTDN--KYDAAGYSVDNEN 54 (147)
T ss_pred CccccchHHHHHHHh-hccCCCCCCCcchhhh-hcceeecCC--HhhhcceeeccCC
Confidence 489999999999977 6654432110112222 358999974 7888999976655
No 53
>PRK10167 hypothetical protein; Provisional
Probab=28.69 E-value=1.4e+02 Score=26.35 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=41.2
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Q 022829 209 GIQTLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTG 255 (291)
Q Consensus 209 ~F~~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG 255 (291)
-+--++--+++.|++++.+.+...-++||+|+|+....+-.+|..+-
T Consensus 95 vL~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~ 141 (169)
T PRK10167 95 VLMHVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMA 141 (169)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34456667899999999999999999999999999999999888874
No 54
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=28.68 E-value=83 Score=30.63 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=44.7
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHc----CCC------CHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 022829 212 TLMAIFSRFLHPSKMALLAKYYNDLQN----QKI------TSQQFVMNLKQVTGDKLLFTVTKFYMNEL 270 (291)
Q Consensus 212 ~L~~~l~~~l~~~~~~~l~~~y~~~k~----~kI------~r~~~vk~lR~IvGD~lL~~~ik~~q~k~ 270 (291)
|.|-.+++.| |.-++.|.++|.++.+ ..| .-+.+|+.++.++|++-..-+|++-+.|+
T Consensus 272 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
T PRK12557 272 MHLLEKQKDL-DAALEILENLDEDLLKEIEEAEIKPTTLVAAQALVKEIKTLIGGRAAEGAIRRSMRKL 339 (342)
T ss_pred CCcchhhhhH-HHHHHHHHHHHHHHhhccccCccccceecChHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555556 4578889999999844 333 45789999999999999999999988775
No 55
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.24 E-value=1.3e+02 Score=29.64 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=49.7
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 214 MAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 214 ~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
+..+--.+.-.-.|.+...|.-.|+-|+||+|.=+-.++-=||=.+++-++++|.+..
T Consensus 195 ~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re~a 252 (359)
T PRK05702 195 LLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQREMA 252 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344444556778889999999999999999999999999999999999999998765
No 56
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=27.83 E-value=1.3e+02 Score=29.47 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=48.7
Q ss_pred HHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 215 AIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 215 ~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
..+--.+.-.-.|.+...|.-.|+-|+||+|.=+-.++.=||=.+++-++++|.+..
T Consensus 189 ~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re~~ 245 (349)
T PRK12721 189 GLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEIQ 245 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 333334455678889999999999999999999999999999999999999998765
No 57
>PRK06298 type III secretion system protein; Validated
Probab=27.51 E-value=1.4e+02 Score=29.51 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 212 TLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 212 ~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
.++..+--.+.-.-.|.+...|.-.|+-|+||+|.=+-.++.=||=.+++-++++|.+..
T Consensus 187 l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~re~~ 246 (356)
T PRK06298 187 AVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIA 246 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 333344445566778889999999999999999999999999999999999999998765
No 58
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=27.40 E-value=1.1e+02 Score=23.61 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=35.6
Q ss_pred cccHHHHHHHHh------ccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 022829 207 WKGIQTLMAIFS------RFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVT 254 (291)
Q Consensus 207 ~~~F~~L~~~l~------~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~Iv 254 (291)
.++...|..+|+ ..+++++.+.+.+..+.=..|+|+-++|++.|..++
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 566666666664 446777777777777777789999999998876654
No 59
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=27.22 E-value=77 Score=29.83 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 022829 234 NDLQNQKITSQQFVMNLKQVTGDKLLFTVTK 264 (291)
Q Consensus 234 ~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik 264 (291)
.....++||++||.+.|+...|.++|...|.
T Consensus 28 ~~~~~~~IT~~e~~~~~k~~~~~~~L~~~I~ 58 (287)
T PRK03095 28 VTSKAGDITKDEFYEQMKTQAGKQVLNNMVM 58 (287)
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999888777664
No 60
>PTZ00183 centrin; Provisional
Probab=27.21 E-value=73 Score=25.78 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=33.5
Q ss_pred cccHHHHHHHHh---ccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 022829 207 WKGIQTLMAIFS---RFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQ 252 (291)
Q Consensus 207 ~~~F~~L~~~l~---~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~ 252 (291)
.++...+...+. ..++..++..+...++.=+.+.|+-++|+..++.
T Consensus 106 ~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 106 KISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 344444554444 5588888888877777667899999999988875
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=27.15 E-value=84 Score=24.14 Aligned_cols=49 Identities=8% Similarity=0.113 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHHhcc----CC----hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 022829 205 SPWKGIQTLMAIFSRF----LH----PSKMALLAKYYNDLQNQKITSQQFVMNLKQV 253 (291)
Q Consensus 205 sp~~~F~~L~~~l~~~----l~----~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~I 253 (291)
+=+++-..|..+|... ++ ..+++.+.+.++.-+.|+|+-++|++.+..+
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3356666666666533 33 5667777777766678999999999877654
No 62
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=26.47 E-value=1.5e+02 Score=29.02 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=49.3
Q ss_pred HHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 215 AIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 215 ~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
.++--.+.-.-.|.+...|.=.|+-|+||+|.=+-.++.=||-.+++-++++|.+..
T Consensus 188 ~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re~~ 244 (342)
T TIGR01404 188 VCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQEIL 244 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 334444556788889999999999999999999999999999999999999997765
No 63
>PTZ00184 calmodulin; Provisional
Probab=26.33 E-value=1.8e+02 Score=22.98 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=30.6
Q ss_pred cccHHHHHHHH---hccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 022829 207 WKGIQTLMAIF---SRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQV 253 (291)
Q Consensus 207 ~~~F~~L~~~l---~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~I 253 (291)
.+++..|..+| ........+..+.+.++.=..+.|+.++|++.+...
T Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 45555554444 334555556666666665577899999999988865
No 64
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=25.60 E-value=79 Score=27.95 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=24.4
Q ss_pred cCCCCHHHHHHHHHHHhh-----hHHHHHHHHHHhhc
Q 022829 238 NQKITSQQFVMNLKQVTG-----DKLLFTVTKFYMNE 269 (291)
Q Consensus 238 ~~kI~r~~~vk~lR~IvG-----D~lL~~~ik~~q~k 269 (291)
++|+|+++||+.+|.+.. +..|..+-.++..+
T Consensus 147 ~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~ 183 (185)
T cd00171 147 KKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKNN 183 (185)
T ss_pred CCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhC
Confidence 679999999999998764 66777776666543
No 65
>PRK11173 two-component response regulator; Provisional
Probab=25.12 E-value=80 Score=27.34 Aligned_cols=51 Identities=6% Similarity=0.068 Sum_probs=39.1
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---hhhHHHHHHHHHHhhccc
Q 022829 220 FLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQV---TGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 220 ~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~I---vGD~lL~~~ik~~q~k~~ 271 (291)
.|++.+..+|. ++-.-...-+||+++...+... .+++.|...|.+||.|+.
T Consensus 160 ~Lt~~E~~ll~-~l~~~~g~v~sr~~l~~~vw~~~~~~~~~~~~~~i~rlR~kl~ 213 (237)
T PRK11173 160 KLPRSEFRAML-HFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFE 213 (237)
T ss_pred eCCHHHHHHHH-HHHhCCCccCcHHHHHHHhcCcCCCCCCccHHHHHHHHHHHhc
Confidence 46666766665 4444556667999999999753 358999999999999996
No 66
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=24.92 E-value=1.5e+02 Score=31.36 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=47.7
Q ss_pred ccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 219 RFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 219 ~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
-.+.-.-.|.+...|+-.|+-|+||+|.=+..|+.=||=.+++-++++|.+..
T Consensus 456 ~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~~ 508 (609)
T PRK12772 456 IMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREMA 508 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999998765
No 67
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=24.90 E-value=90 Score=24.30 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=34.7
Q ss_pred cccHHHHHHHHhccC--------ChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 022829 207 WKGIQTLMAIFSRFL--------HPSKMALLAKYYNDLQNQKITSQQFVMNLKQVT 254 (291)
Q Consensus 207 ~~~F~~L~~~l~~~l--------~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~Iv 254 (291)
.++...|-..+.+.+ ++..++.+.+..+.=+.|+|+=+||++.|..++
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 466666777776654 356666666666665779999999999887664
No 68
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=24.73 E-value=1.1e+02 Score=23.90 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=31.2
Q ss_pred cccHHHHHHHHhc----cCCh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Q 022829 207 WKGIQTLMAIFSR----FLHP-SKMALLAKYYNDLQNQKITSQQFVMNLKQVTG 255 (291)
Q Consensus 207 ~~~F~~L~~~l~~----~l~~-~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvG 255 (291)
.++...|-.+|+. ++.. ++++.+.+..+.=..|+|+=+||++.|..++-
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 3544444444444 4544 56666666666667789999999888776653
No 69
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.60 E-value=1.8e+02 Score=28.82 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=50.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 213 LMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 213 L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
++.++--.+.-.-.|.....|.-.|+-|+||+|.=+-.++.=||=.+++-++++|.+..
T Consensus 182 ~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~~re~a 240 (361)
T PRK08156 182 VLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEIL 240 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33444455567788889999999999999999999999999999999999999998765
No 70
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=23.56 E-value=1.3e+02 Score=26.40 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHhccC-ChhHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 205 SPWKGIQTLMAIFSRFL-HPSKMALLAKYYNDL---QNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 205 sp~~~F~~L~~~l~~~l-~~~~~~~l~~~y~~~---k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
...|.|+.++.+++..+ -.+.-+-|...++.| ..|+|+..+|++.|. -.|+++.-+-+..+-....
T Consensus 69 ~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-~lge~~~deev~~ll~~~d 138 (160)
T COG5126 69 NETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK-SLGERLSDEEVEKLLKEYD 138 (160)
T ss_pred CCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH-hhcccCCHHHHHHHHHhcC
Confidence 46788999999999888 333345555555555 558999999988887 5577777666666654443
No 71
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=23.27 E-value=78 Score=27.16 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=41.4
Q ss_pred cCChhHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHhhhHHHHHHHHHHhhccc
Q 022829 220 FLHPSKMALLAKYYNDLQNQKITSQQFVMNL--KQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 220 ~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~l--R~IvGD~lL~~~ik~~q~k~~ 271 (291)
.|++..+.+|.-+++ -...=|||+||+.++ ..+|.|.-|.+.|..||.-+.
T Consensus 31 ~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~Ltq~I~~LRr~L~ 83 (148)
T COG3710 31 KLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNTLTQAISALRRALR 83 (148)
T ss_pred EecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccChHHHHHHHHHHHHh
Confidence 577888888888887 555568999999988 566767779999999997766
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=22.79 E-value=70 Score=25.92 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=49.2
Q ss_pred CCCCcccHHHHHHHHh-ccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccccccccCCCCC
Q 022829 203 TTSPWKGIQTLMAIFS-RFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELRSARNAGGSRG 281 (291)
Q Consensus 203 ~~sp~~~F~~L~~~l~-~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~~~~~~~~~~~ 281 (291)
|..-.++-...-..+. -.||.+.+..|-..-+.-+.|+++++||+-.|+.|. .++.-.+..+=+.+|+.=-..++++
T Consensus 21 ~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~--~~~~~~~~~lP~~LP~~L~p~s~~~ 98 (104)
T PF12763_consen 21 PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN--RKLNGNGKPLPSSLPPSLIPPSKRP 98 (104)
T ss_dssp SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH--HHHHHTTS---SSSSGGGSSSCG--
T ss_pred CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH--HHhcCCCCCCchhcCHHHCCCCccc
Confidence 4445566666555554 469999999999999999999999999999999885 2333233344444544333444444
Q ss_pred c
Q 022829 282 V 282 (291)
Q Consensus 282 ~ 282 (291)
+
T Consensus 99 ~ 99 (104)
T PF12763_consen 99 L 99 (104)
T ss_dssp -
T ss_pred c
Confidence 4
No 73
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.78 E-value=1.9e+02 Score=28.90 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=48.8
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 214 MAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 214 ~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
+..+--.+.-.-.+.+...|.-.|+-|+||+|.=+-.++-=||=.+++-++++|.+..
T Consensus 195 ~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~~re~a 252 (386)
T PRK12468 195 LVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAMA 252 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3333334445678888999999999999999999999999999999999999998765
No 74
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=22.55 E-value=57 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 022829 239 QKITSQQFVMNLKQVTGDKLLFTVTKFYMN 268 (291)
Q Consensus 239 ~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~ 268 (291)
+.+||++|.++.=.-+|| +|-+-+.-||.
T Consensus 41 C~ls~edF~~~~p~~~Gd-IL~~hL~~L~k 69 (71)
T cd08533 41 CALGKERFLELAPDFVGD-ILWEHLEILQK 69 (71)
T ss_pred HcCCHHHHHHHcCCCcch-HHHHHHHHHHh
Confidence 679999999988777899 66666666653
No 75
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.31 E-value=2e+02 Score=28.43 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=51.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 212 TLMAIFSRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 212 ~L~~~l~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
.++..+--.+.-.-.+.+...|.-.|+-|+||+|.=+-.++-=||=.+++-++++|.+..
T Consensus 195 l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~~re~~ 254 (358)
T PRK13109 195 LVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSLAQDRA 254 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 344444455567778889999999999999999999999999999999999999998765
No 76
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=20.52 E-value=98 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHHHHh
Q 022829 239 QKITSQQFVMNLKQVTGDKLLFTVTKFYM 267 (291)
Q Consensus 239 ~kI~r~~~vk~lR~IvGD~lL~~~ik~~q 267 (291)
+++|+|||++++=. .|| +|-+.+..++
T Consensus 46 C~ms~eeF~~~~p~-~Gd-vLy~~lq~~~ 72 (78)
T cd08538 46 CSMTQEEFIEAAGI-CGE-YLYFILQNIR 72 (78)
T ss_pred HcCCHHHHHHHccc-chH-HHHHHHHHHH
Confidence 68999999998866 788 7777776654
No 77
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.45 E-value=2.1e+02 Score=30.62 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=47.4
Q ss_pred hccCChhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Q 022829 218 SRFLHPSKMALLAKYYNDLQNQKITSQQFVMNLKQVTGDKLLFTVTKFYMNELR 271 (291)
Q Consensus 218 ~~~l~~~~~~~l~~~y~~~k~~kI~r~~~vk~lR~IvGD~lL~~~ik~~q~k~~ 271 (291)
--.+.-.-.|.+-..|+-.|+-|+||+|.=+-.++-=||=.+++-++++|.+..
T Consensus 490 lvllVIAiiD~~~QR~~f~KkLKMSKQEVKdE~KEsEGDPeIKaRRRqlqREma 543 (646)
T PRK12773 490 IILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMM 543 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 334455667888899999999999999999999999999999999999998876
No 78
>cd00236 FinO_conjug_rep FinO bacterial conjugation repressor domain; the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which encodes the proteins responsible for conjugative transfer of this plasmid from host to recipient Escherichia coli cells; antisense RNA, FinP is thought to interact with traJ mRNA to occlude its ribosome binding site, blocking traJ translation and thereby inhibiting transcription of the tra operon; FinO protects FinP against degradation by binding to FinP and sterically blocking the cellular endonuclease RNase E; FinO also also binds to the complementary stem-loop structures in traJ mRNA and promotes duplex formation between FinP and traJ RNA in vitro; this domain contains two independent RNA binding regions
Probab=20.39 E-value=1.4e+02 Score=26.02 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHhh-hHHHHH
Q 022829 210 IQTLMAIFSRFLHPSKMALLAKYYNDLQ---NQKITSQQFVMNLKQVTG-DKLLFT 261 (291)
Q Consensus 210 F~~L~~~l~~~l~~~~~~~l~~~y~~~k---~~kI~r~~~vk~lR~IvG-D~lL~~ 261 (291)
||.||+. ...-|-++-+-...++++. .-.||+.+|-..||.++. -+-|..
T Consensus 47 fP~lF~~--~~~~PLKiGI~~di~~dl~~~~~~~lsk~~Lr~AL~~~t~s~rYL~~ 100 (146)
T cd00236 47 FPGLFPG--DTPRLLKCGIKDGILQDVAQHPNIPLTHEELRCAVKAITRRESYLQA 100 (146)
T ss_pred HHHhcCC--CCCcccccChHHHHHHHHHhCccCCCCHHHHHHHHHHHhCCHHHHHH
Confidence 7778877 3333445666666666664 457999999999999996 556655
Done!