BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022831
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%)
Query: 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
RLLH + RVGDL R+I +YT+ GM+LLR + PE KYS AF+G+GPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIF 142
GV Y++GT +GH+A++ ++ + E IR GGNVTRE GP+KG TT AFV+DPDGY
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 143 ELIQ 146
ELI+
Sbjct: 122 ELIE 125
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG 213
L MLRVGDL RSI FY K LGMKLLRT ++PE K +LA +GY E + V+EL Y++G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 214 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDG 273
V +Y G AY +A+S D+ ++ E + ++ GG +TR+ GP+ G T I DPDG
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDG 118
Query: 274 WKTVLVDNED 283
+K L++ +D
Sbjct: 119 YKIELIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%), Gaps = 5/125 (4%)
Query: 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81
RR+LH + RVGDLDR+IK+YTE GM++LRK DVPE+KY+ FLG+GPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYI 141
YGVTSY +GH+AI EDV ++V ++R + E + AFV DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDE-----SGFMAFVVDPDGYY 121
Query: 142 FELIQ 146
EL+
Sbjct: 122 IELLN 126
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 13/140 (9%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG 213
+ M+RVGDL RSIKFY + LGMK+LR D PE K L LGY E +TVLEL Y+YG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 214 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTK--ITSFVDP 271
VT Y AY +AI +DV +EL + + PI + + VDP
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV-----------KELVADMRKHDVPIDYEDESGFMAFVVDP 117
Query: 272 DGWKTVLVDNEDFLKELQSE 291
DG+ L++ + +++ +++
Sbjct: 118 DGYYIELLNEKTMMEKAEAD 137
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 131/286 (45%), Gaps = 51/286 (17%)
Query: 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-----------KYSNAFLGFGPE 70
RR LH V++VG+ +T ++Y + GM++LR + E K+S +GFGPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 QSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTH 130
+FV ELTYNYGV Y +G F + +A+ + V N R + PL +
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASS---QAVSNAR-------KLEWPLTEVAEG 135
Query: 131 FAFVKDPDGYIFELIQRG-PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK 189
+ P GY F L R P +P+ +V L V DL +S+ ++ LGMK+ + +
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQ-- 193
Query: 190 CALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST--------DDVYKSAE--- 238
A+LGYA D LEL G ++ A+ ++A S +D+ K
Sbjct: 194 --RALLGYA--DNQCKLELQGVKGGVDHAA--AFGRIAFSCPQKELPDLEDLMKRENQKI 247
Query: 239 VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284
+ LV+ + GK T Q + DPDG + V +E F
Sbjct: 248 LTPLVSLDTPGKATVQ----------VVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 30/149 (20%)
Query: 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF---------GPEQSYF 74
L + R+ D +++ +YT G+ LL+K D P K+S FL + E++ +
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 75 ------VVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTR 119
+ELT+N+G SY G GFGH+ IA DVY + G +
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 120 EP--GPLKGMTTHFAFVKDPDGYIFELIQ 146
+P G +KG+ AF++DPDGY E++
Sbjct: 152 KPDDGKMKGL----AFIQDPDGYWIEILN 176
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 48/194 (24%)
Query: 120 EPGPLK-GMT--THFAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P G+T T F+ DPD + + L Q MLR+ D +S+ FY + LG
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 177 MKLLRTIDSPELKCALAMLGYAEED---------------QTTVLELAYSYGVTE----- 216
+ LL+ +D P +K +L L Y +++ + LEL +++G +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQS 114
Query: 217 YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GPIPGLNTKITSFV- 269
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F+
Sbjct: 115 YHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AFIQ 165
Query: 270 DPDG-WKTVLVDNE 282
DPDG W +L N+
Sbjct: 166 DPDGYWIEILNPNK 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY---------- 73
L + RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 74 -----FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTR 119
+ELT+N+G SY G GFGH+ IA DVY + G +
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 120 EP--GPLKGMTTHFAFVKDPDGYIFELIQ 146
+P G +KG+ AF++DPDGY E++
Sbjct: 151 KPDDGKMKGL----AFIQDPDGYWIEILN 175
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 201
L Q MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 202 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 249
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 146
Query: 250 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 282
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 147 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 178
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY---------- 73
L + RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 74 -----FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTR 119
+ELT+N+G SY G GFGH+ IA DVY + G +
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 154
Query: 120 EP--GPLKGMTTHFAFVKDPDGYIFELIQ 146
+P G +KG+ AF++DPDGY E++
Sbjct: 155 KPDDGKMKGL----AFIQDPDGYWIEILN 179
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 201
L Q MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 202 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 249
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 150
Query: 250 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 282
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 151 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 182
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY---------- 73
L + RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 74 -----FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTR 119
+ELT+N+G SY G GFGH+ IA DVY + G +
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 120 EP--GPLKGMTTHFAFVKDPDGYIFELIQ 146
+P G +KG+ AF++DPDGY +++
Sbjct: 151 KPDDGKMKGL----AFIQDPDGYWIQILN 175
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 201
L + MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 202 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 249
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 146
Query: 250 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 282
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 147 KFVKKPDDGKMKGL-----AFIQDPDGYWIQILNPNK 178
>pdb|3BQX|A Chain A, High Resolution Crystal Structure Of A Glyoxalase-Related
Enzyme From Fulvimarina Pelagi
Length = 150
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 31 VGDLDRTIKYYTECFGMELLRKRDVPEEKY--SNAFLGFGPEQSYFVVELTYNYGV--TS 86
+GDL+ + ++Y E FG + + PE + N F+ ++ V L + GV TS
Sbjct: 13 IGDLEASARFYGEGFGWAPVFRN--PEIIFYQXNGFV----LATWLVQNLQEDVGVAVTS 66
Query: 87 YDIGTGFGHLAIATEDVYKMVENIRAKGGNVTR--EPGPLKGMTTHFAFVKDPDGYIFEL 144
H A +V + E + A GG + R + P G+ +V DPDG+I+E+
Sbjct: 67 RPGSXALAHNVRAETEVAPLXERLVAAGGQLLRPADAPPHGGLR---GYVADPDGHIWEI 123
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Query: 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
+L H V + + +Y ++LL D+P + AFL G + + L+
Sbjct: 8 KLDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEES 67
Query: 83 GVTSY--DIGTGFGHLAIATEDVYKMVENIRAKGGN-VTREPGP-LKGMTTHFAFVKDPD 138
+ + G G H+AI + + + ++ ++ G + EP P +G F +
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSAR 127
Query: 139 GYIFELIQRGPTPEPL 154
G ++E ++ E L
Sbjct: 128 GVLYEFCEKKEQAENL 143
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
Query: 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81
+ + H + T +Y E G E+LR+ PE+ L G ++ + +
Sbjct: 4 KEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP 63
Query: 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMT-THFAFVKDPDGY 140
SY G HLA E + +++ + +G + EP + T F DPDG
Sbjct: 64 -ARPSYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGL 120
Query: 141 IFEL 144
EL
Sbjct: 121 PLEL 124
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 25/116 (21%)
Query: 90 GTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149
G G +A+AT DV E G R PG A + + LIQR
Sbjct: 72 GDGVADIAMATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDG 131
Query: 150 TPEPL-------------------------CQVMLRVGDLGRSIKFYEKALGMKLL 180
T L + L GDLG ++++YE+ALG + +
Sbjct: 132 TSAELPPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQI 187
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVEL------- 78
H Y D D KYY E FG L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAF 133
T + ++ G H+A +D+ + +R +G + + L G +F
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFMH 131
Query: 134 VKDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
RL H V DL++ +Y G ++ +PE S F+ G + + L +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDS 64
Query: 83 GVTSY---DIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDP 137
+ + + G H+ I +++ V +++ K E + G F KD
Sbjct: 65 PIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDC 124
Query: 138 DGYIFELIQ 146
G + EL Q
Sbjct: 125 GGVLVELEQ 133
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVEL------- 78
H Y D D KYY E FG L + + PE+ + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAF 133
T + ++ G H A +D+ + +R +G + + L G +F
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFXH 131
Query: 134 VKDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 60 YSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTG---------FGHLAIATEDVYKMVENI 110
+S A GFG E + +V+L V SY+ TG GHLA D Y
Sbjct: 70 HSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKY------ 123
Query: 111 RAKGGNVTREPGPLKGMTTHFA 132
G ++ P G++ HFA
Sbjct: 124 ---GRAISHGTCPGVGISGHFA 142
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 17 PKKDKRRLLH---AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY 73
PK ++ R LH + VG+ + +Y G E L + + E S + +Q
Sbjct: 9 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGL--ETGSREVVSHVIKQGK 66
Query: 74 FVVELT-----YNYGVTSYDI--GTGFGHLAIATEDVYKMVENIRAKGGNVTREP 121
V L +N + + + G G +A ED +V+ R +G + REP
Sbjct: 67 IVFVLCSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCEHIVQKARERGAKIVREP 121
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 87 YDIGTGFGHLAIATEDVYKMVENIRAKG 114
Y+ G G H+A+ TED+ + ++R +G
Sbjct: 258 YNGGAGVQHIALRTEDIITTIRHLRERG 285
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGP-EQSYFVVELT-YNYG 83
H V D D++ ++Y G E++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 84 VTSYDI-----GTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPD 138
I G HLA EDV + + A G V E AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVE-EVRYDDYTGKKMAFFFDPD 126
Query: 139 GYIFEL 144
G EL
Sbjct: 127 GLPLEL 132
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81
RRL H V V + T +Y++ GME++ ++ L FG +Q + + E+
Sbjct: 26 RRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKE------DRKALCFG-DQKFNLHEVGKE 78
Query: 82 YGVTSYDIGTGFGHLAIATE-DVYKMVENIRAKGGNVTREPGPLKG-----MTTHFAFVK 135
+ + G + + TE + +M+++++A + P P G M+ +F +
Sbjct: 79 FEPKAAHPVPGSLDICLITEVPLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYF---R 135
Query: 136 DPDGYIFEL 144
DPD + E+
Sbjct: 136 DPDRNLIEV 144
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 59 KYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENI 110
KYS FL + + +L T Y+IGTG GHL + K V +I
Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSI 57
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 18 KKDKRRLLH---AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYF 74
K ++ R LH + VG+ + +Y G E L R + E S + +Q
Sbjct: 3 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGL--ETGSREVVSHVIKQGKI 60
Query: 75 VVELT-----YNYGVTSYDI--GTGFGHLAIATEDVYKMVENIRAKGGNVTREP 121
V L+ +N + + + G G +A ED +V+ R +G + REP
Sbjct: 61 VFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREP 114
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 87 YDIGTGFGHLAIATEDVYKMVENIRAKG 114
Y+ G G H+A+ TED+ + ++R +G
Sbjct: 251 YNGGAGVQHIALKTEDIITAIRHLRERG 278
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
L H V V D+ T K+Y + G + + L FG Q + +L + +
Sbjct: 10 HLDHLVLTVADIPTTTKFYEKVLGXKAVSFGS------GRIALEFG-HQKINLHQLGHEF 62
Query: 83 GVTSYDIGTGFGHLAIATE-DVYKMVENIRAKGGNVTREPGPLK-----GMTTHFAFVKD 136
+ ++ TG L T+ D+ E + +G V GP+K G T F F +D
Sbjct: 63 EPKAQNVRTGSADLCFITDIDLSDAXEYVENQG--VVIXEGPVKRTGAQGAITSFYF-RD 119
Query: 137 PDGYIFEL 144
PDG + E+
Sbjct: 120 PDGNLIEV 127
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 31 VGDLDRTIKYYTECFGMELLRKRDVP--EEKYSNAFLGFGPEQSYFVVELTYNYGVTSYD 88
V D + +YT G L K DVP +++ P+ + ++E + + VT +
Sbjct: 34 VDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQLLLEPSSHAAVTPFK 91
Query: 89 ---IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145
+ G + A +D+ E + A G T+EP + T A + D G + +L
Sbjct: 92 EALVADGIPAASFAVDDIAAEYERLSALGVRFTQEPTDXGPVVT--AILDDTCGNLIQLX 149
Query: 146 Q 146
Q
Sbjct: 150 Q 150
>pdb|2QNT|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Agrobacterium Tumefaciens Str. C58
Length = 141
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 161 VGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAY--------SY 212
V D+ RS FY LG+K+L S L G+A + ++ E + +Y
Sbjct: 16 VRDINRSKSFYRDRLGLKILEDFGS----FVLFETGFAIHEGRSLEETIWRTSSDAQEAY 71
Query: 213 GVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD 272
G +A V + D+ E+++ + ++ G+ ++ F DPD
Sbjct: 72 GRRNXLLYFEHADVDAAFQDIAPHVELIHPLERQAWGQ-------------RVFRFYDPD 118
Query: 273 G 273
G
Sbjct: 119 G 119
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ-SYFVVELTYN 81
R+ H V V D+ TI++Y E G + K + L FG ++ + E+ +
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFSAVTF------KQNRKALIFGAQKINLHQQEMEFE 76
Query: 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFA--FVKDPDG 139
+ G+ I + + +V I G ++ P G T +++DPDG
Sbjct: 77 PKASRPTPGSA-DLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDG 135
Query: 140 YIFELIQ 146
+ E+ Q
Sbjct: 136 NLIEISQ 142
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 162 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLG------YAEED-QTTVLEL 208
G +G + KALG KL+ T+ SPE LG Y+ ED VLEL
Sbjct: 151 GGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLEL 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,200,192
Number of Sequences: 62578
Number of extensions: 397444
Number of successful extensions: 1175
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 53
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)