Query 022831
Match_columns 291
No_of_seqs 177 out of 2303
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 1E-45 2.3E-50 313.7 33.7 284 2-289 3-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 1.2E-33 2.6E-38 219.0 21.3 259 12-289 6-278 (299)
3 TIGR03211 catechol_2_3 catecho 100.0 3.1E-32 6.8E-37 233.7 27.3 236 21-282 2-266 (303)
4 TIGR02295 HpaD 3,4-dihydroxyph 100.0 7.1E-32 1.5E-36 230.6 28.6 234 20-282 1-257 (294)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 2.2E-31 4.7E-36 226.5 26.9 234 21-281 1-263 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 1.6E-21 3.5E-26 170.1 24.7 223 22-255 1-267 (353)
7 COG2514 Predicted ring-cleavag 99.9 3.5E-21 7.6E-26 154.2 20.9 196 19-232 6-242 (265)
8 TIGR00068 glyox_I lactoylgluta 99.9 4.3E-20 9.2E-25 142.1 17.9 141 10-150 4-144 (150)
9 PLN02367 lactoylglutathione ly 99.9 1.3E-20 2.9E-25 150.8 14.3 129 152-286 74-227 (233)
10 TIGR00068 glyox_I lactoylgluta 99.9 2.5E-20 5.5E-25 143.4 14.8 138 149-290 13-150 (150)
11 PLN02875 4-hydroxyphenylpyruva 99.9 2.4E-19 5.2E-24 155.2 22.2 222 24-255 1-295 (398)
12 PRK10291 glyoxalase I; Provisi 99.8 1.9E-19 4.1E-24 134.9 16.2 124 28-151 1-124 (129)
13 PLN02367 lactoylglutathione ly 99.8 3.6E-19 7.8E-24 142.6 18.4 129 20-150 72-225 (233)
14 PLN03042 Lactoylglutathione ly 99.8 5.3E-19 1.1E-23 139.0 18.8 147 1-149 1-176 (185)
15 PRK10291 glyoxalase I; Provisi 99.8 1.2E-19 2.6E-24 136.0 13.3 124 158-285 1-124 (129)
16 PLN03042 Lactoylglutathione ly 99.8 1.3E-18 2.8E-23 136.8 14.2 128 151-284 25-177 (185)
17 cd08358 Glo_EDI_BRP_like_21 Th 99.8 6.5E-18 1.4E-22 124.6 16.2 115 22-146 1-126 (127)
18 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 4.9E-18 1.1E-22 129.4 15.5 123 21-147 1-141 (142)
19 cd08342 HPPD_N_like N-terminal 99.8 2E-18 4.4E-23 130.5 13.2 124 154-288 1-130 (136)
20 PRK11478 putative lyase; Provi 99.8 9.4E-18 2E-22 125.6 15.7 124 19-147 2-129 (129)
21 cd07233 Glyoxalase_I Glyoxalas 99.8 6.2E-18 1.3E-22 125.0 14.3 120 154-279 1-121 (121)
22 cd08358 Glo_EDI_BRP_like_21 Th 99.8 5.1E-18 1.1E-22 125.1 13.6 114 153-280 2-126 (127)
23 PLN02300 lactoylglutathione ly 99.8 3.4E-18 7.4E-23 145.3 14.4 134 149-286 20-153 (286)
24 cd07233 Glyoxalase_I Glyoxalas 99.8 1.7E-17 3.6E-22 122.7 16.1 120 24-145 1-121 (121)
25 KOG0638 4-hydroxyphenylpyruvat 99.8 1.3E-18 2.9E-23 141.0 10.8 256 20-281 14-337 (381)
26 cd08342 HPPD_N_like N-terminal 99.8 2.6E-17 5.6E-22 124.4 15.7 120 24-150 1-126 (136)
27 cd07243 2_3_CTD_C C-terminal d 99.8 9.5E-18 2E-22 127.7 13.3 121 151-281 4-125 (143)
28 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.3E-17 2.8E-22 127.1 13.7 122 152-281 2-141 (142)
29 cd08360 MhqB_like_C C-terminal 99.8 1.4E-17 3.1E-22 125.5 13.8 121 151-285 1-124 (134)
30 cd07257 THT_oxygenase_C The C- 99.8 4E-18 8.6E-23 131.4 10.6 123 153-286 1-130 (153)
31 PRK04101 fosfomycin resistance 99.8 6.3E-17 1.4E-21 122.8 15.7 118 20-148 1-120 (139)
32 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 4.3E-17 9.3E-22 121.1 14.5 118 23-144 1-124 (125)
33 cd07243 2_3_CTD_C C-terminal d 99.8 8.5E-17 1.8E-21 122.5 16.4 120 19-147 2-125 (143)
34 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 8.5E-17 1.8E-21 119.4 15.5 122 21-146 1-125 (125)
35 cd07257 THT_oxygenase_C The C- 99.7 4.8E-17 1E-21 125.4 13.9 119 23-148 1-126 (153)
36 TIGR03645 glyox_marine lactoyl 99.7 5.4E-17 1.2E-21 126.2 13.6 127 151-284 2-154 (162)
37 cd08360 MhqB_like_C C-terminal 99.7 1.7E-16 3.8E-21 119.6 15.9 117 22-148 2-121 (134)
38 PRK11478 putative lyase; Provi 99.7 5.3E-17 1.2E-21 121.5 12.9 120 152-280 5-128 (129)
39 cd07265 2_3_CTD_N N-terminal d 99.7 1.7E-16 3.7E-21 117.6 15.1 117 20-148 1-120 (122)
40 TIGR03645 glyox_marine lactoyl 99.7 1.7E-16 3.8E-21 123.3 15.7 124 22-148 3-152 (162)
41 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 6.1E-17 1.3E-21 120.3 12.6 119 153-279 1-125 (125)
42 cd07258 PpCmtC_C C-terminal do 99.7 9.9E-17 2.1E-21 121.6 12.8 116 155-286 1-119 (141)
43 cd07265 2_3_CTD_N N-terminal d 99.7 1.6E-16 3.5E-21 117.7 13.0 116 152-283 3-121 (122)
44 cd07256 HPCD_C_class_II C-term 99.7 1.7E-16 3.7E-21 123.3 13.6 120 151-283 1-125 (161)
45 TIGR03081 metmalonyl_epim meth 99.7 1.1E-16 2.4E-21 119.4 11.7 119 153-280 1-128 (128)
46 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 1.7E-16 3.7E-21 117.8 12.6 120 152-280 2-125 (125)
47 cd07237 BphC1-RGP6_C_like C-te 99.7 2E-16 4.3E-21 122.0 13.2 124 150-285 6-135 (154)
48 cd09014 BphC-JF8_C_like C-term 99.7 6.7E-16 1.4E-20 120.6 15.9 124 19-148 2-128 (166)
49 cd07247 SgaA_N_like N-terminal 99.7 4.2E-16 9.2E-21 114.0 13.4 114 154-280 1-114 (114)
50 PF00903 Glyoxalase: Glyoxalas 99.7 1E-16 2.2E-21 119.4 10.0 120 23-144 1-128 (128)
51 cd07237 BphC1-RGP6_C_like C-te 99.7 8.3E-16 1.8E-20 118.6 15.3 122 19-148 5-132 (154)
52 TIGR03081 metmalonyl_epim meth 99.7 4.2E-16 9.1E-21 116.3 13.2 119 23-146 1-128 (128)
53 cd08364 FosX FosX, a fosfomyci 99.7 1.3E-15 2.7E-20 114.4 15.4 120 20-148 1-123 (131)
54 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1.1E-15 2.3E-20 113.4 14.9 118 21-146 1-124 (125)
55 cd09013 BphC-JF8_N_like N-term 99.7 1.3E-15 2.7E-20 112.8 14.7 115 19-148 2-119 (121)
56 cd08361 PpCmtC_N N-terminal do 99.7 7.1E-16 1.5E-20 114.6 12.8 113 20-148 3-120 (124)
57 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1E-15 2.3E-20 113.0 13.6 114 22-147 1-119 (120)
58 cd08347 PcpA_C_like C-terminal 99.7 1.8E-15 4E-20 116.8 15.5 117 23-148 1-121 (157)
59 cd07247 SgaA_N_like N-terminal 99.7 1.8E-15 3.9E-20 110.6 14.8 114 24-146 1-114 (114)
60 cd08363 FosB FosB, a fosfomyci 99.7 9.5E-16 2.1E-20 115.0 13.5 114 24-148 1-116 (131)
61 PRK04101 fosfomycin resistance 99.7 9.1E-16 2E-20 116.4 13.2 116 152-282 3-120 (139)
62 cd08343 ED_TypeI_classII_C C-t 99.7 2.9E-15 6.3E-20 112.4 15.8 116 25-149 1-119 (131)
63 cd07239 BphC5-RK37_C_like C-te 99.7 6.6E-16 1.4E-20 117.7 12.2 117 151-285 2-121 (144)
64 cd07266 HPCD_N_class_II N-term 99.7 1.3E-15 2.8E-20 112.6 13.5 116 20-148 1-119 (121)
65 PF00903 Glyoxalase: Glyoxalas 99.7 3.1E-16 6.8E-21 116.7 10.0 120 153-278 1-128 (128)
66 cd07256 HPCD_C_class_II C-term 99.7 3.1E-15 6.6E-20 116.3 15.5 118 22-148 2-124 (161)
67 cd07263 Glo_EDI_BRP_like_16 Th 99.7 3E-15 6.5E-20 110.0 14.5 117 26-146 1-119 (119)
68 cd07263 Glo_EDI_BRP_like_16 Th 99.7 1.1E-15 2.4E-20 112.3 11.9 117 156-280 1-119 (119)
69 cd08343 ED_TypeI_classII_C C-t 99.7 2.1E-15 4.6E-20 113.2 13.5 118 155-285 1-121 (131)
70 cd08347 PcpA_C_like C-terminal 99.7 1.8E-15 3.9E-20 116.9 13.4 117 153-282 1-121 (157)
71 cd09014 BphC-JF8_C_like C-term 99.7 1.7E-15 3.8E-20 118.2 13.4 120 152-281 5-127 (166)
72 cd07239 BphC5-RK37_C_like C-te 99.7 3E-15 6.4E-20 114.1 14.3 114 22-149 3-119 (144)
73 cd07264 Glo_EDI_BRP_like_15 Th 99.7 4E-15 8.7E-20 110.6 14.7 117 24-147 1-125 (125)
74 cd07249 MMCE Methylmalonyl-CoA 99.7 2.7E-15 6E-20 111.8 13.8 119 24-146 1-128 (128)
75 cd08363 FosB FosB, a fosfomyci 99.7 1.3E-15 2.8E-20 114.3 11.7 115 154-283 1-117 (131)
76 cd07255 Glo_EDI_BRP_like_12 Th 99.7 7.9E-15 1.7E-19 109.0 16.0 117 22-149 1-121 (125)
77 cd08355 Glo_EDI_BRP_like_14 Th 99.7 6.8E-15 1.5E-19 108.9 15.5 115 27-146 3-121 (122)
78 cd07249 MMCE Methylmalonyl-CoA 99.7 2.2E-15 4.8E-20 112.3 12.9 119 154-280 1-128 (128)
79 PRK06724 hypothetical protein; 99.7 3.9E-15 8.4E-20 110.9 14.0 112 20-148 4-124 (128)
80 cd08355 Glo_EDI_BRP_like_14 Th 99.7 4.3E-15 9.3E-20 110.0 14.2 115 157-280 3-121 (122)
81 cd07240 ED_TypeI_classII_N N-t 99.7 7.4E-15 1.6E-19 107.8 15.2 112 22-148 1-115 (117)
82 cd08351 ChaP_like ChaP, an enz 99.7 6.2E-15 1.3E-19 109.4 14.9 112 20-147 1-121 (123)
83 PRK06724 hypothetical protein; 99.7 2E-15 4.3E-20 112.5 12.2 111 152-282 6-124 (128)
84 cd08361 PpCmtC_N N-terminal do 99.7 1.9E-15 4.2E-20 112.3 12.0 113 152-284 5-122 (124)
85 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 1.1E-14 2.4E-19 107.6 16.1 116 27-147 5-122 (122)
86 cd08346 PcpA_N_like N-terminal 99.7 4.6E-15 9.9E-20 110.2 14.0 120 23-145 1-126 (126)
87 cd07252 BphC1-RGP6_N_like N-te 99.7 4.2E-15 9E-20 109.8 13.6 113 22-148 1-118 (120)
88 cd07258 PpCmtC_C C-terminal do 99.7 5.1E-15 1.1E-19 112.2 14.3 113 25-149 1-116 (141)
89 cd09013 BphC-JF8_N_like N-term 99.7 2.6E-15 5.6E-20 111.1 12.4 113 152-283 5-120 (121)
90 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.3E-14 2.8E-19 108.4 16.0 116 23-146 1-127 (128)
91 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 3.9E-15 8.5E-20 110.4 13.0 117 152-280 2-124 (125)
92 cd07267 THT_Oxygenase_N N-term 99.6 1E-14 2.2E-19 106.5 14.9 110 21-147 1-110 (113)
93 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 3.5E-15 7.6E-20 108.5 12.3 113 24-144 1-114 (114)
94 cd07266 HPCD_N_class_II N-term 99.6 3E-15 6.6E-20 110.7 12.0 114 152-282 3-119 (121)
95 cd09011 Glo_EDI_BRP_like_23 Th 99.6 2.6E-15 5.6E-20 110.9 11.6 113 153-281 2-119 (120)
96 cd08346 PcpA_N_like N-terminal 99.6 3.7E-15 8E-20 110.7 12.4 120 153-279 1-126 (126)
97 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 8.3E-15 1.8E-19 109.4 14.1 117 153-281 1-128 (128)
98 COG3185 4-hydroxyphenylpyruvat 99.6 1.8E-14 3.9E-19 119.5 17.1 227 15-256 15-275 (363)
99 cd07264 Glo_EDI_BRP_like_15 Th 99.6 3.7E-15 7.9E-20 110.8 11.9 115 154-281 1-125 (125)
100 cd08359 Glo_EDI_BRP_like_22 Th 99.6 1.3E-14 2.8E-19 106.9 14.4 111 26-146 4-119 (119)
101 cd07252 BphC1-RGP6_N_like N-te 99.6 5.7E-15 1.2E-19 109.1 12.1 112 153-282 2-118 (120)
102 cd08362 BphC5-RrK37_N_like N-t 99.6 1.9E-14 4.1E-19 106.2 14.5 113 21-148 1-118 (120)
103 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.3E-14 2.8E-19 107.2 13.7 116 157-281 5-122 (122)
104 cd08348 BphC2-C3-RGP6_C_like T 99.6 4.5E-14 9.7E-19 106.3 16.7 120 23-150 1-123 (134)
105 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 5.4E-15 1.2E-19 107.5 11.2 113 154-278 1-114 (114)
106 cd08351 ChaP_like ChaP, an enz 99.6 8.8E-15 1.9E-19 108.6 12.5 110 153-281 4-121 (123)
107 cd07255 Glo_EDI_BRP_like_12 Th 99.6 1.3E-14 2.8E-19 107.8 13.3 117 153-284 2-122 (125)
108 cd08364 FosX FosX, a fosfomyci 99.6 1.3E-14 2.7E-19 108.9 13.2 117 152-281 3-122 (131)
109 PF12681 Glyoxalase_2: Glyoxal 99.6 1.7E-14 3.6E-19 104.3 13.2 108 29-145 1-108 (108)
110 cd08348 BphC2-C3-RGP6_C_like T 99.6 2.1E-14 4.5E-19 108.2 13.5 121 153-285 1-124 (134)
111 TIGR03211 catechol_2_3 catecho 99.6 2.5E-14 5.4E-19 122.8 15.6 121 17-146 139-264 (303)
112 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 4.8E-14 1.1E-18 102.7 14.8 109 26-147 3-111 (112)
113 cd08359 Glo_EDI_BRP_like_22 Th 99.6 2.2E-14 4.9E-19 105.6 12.9 112 156-280 4-119 (119)
114 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 2.5E-14 5.5E-19 104.2 13.1 108 157-281 4-111 (112)
115 cd07240 ED_TypeI_classII_N N-t 99.6 2.5E-14 5.5E-19 104.9 13.1 111 153-282 2-115 (117)
116 cd07244 FosA FosA, a Fosfomyci 99.6 3.1E-14 6.8E-19 105.3 13.2 109 23-148 1-111 (121)
117 PF12681 Glyoxalase_2: Glyoxal 99.6 1.5E-14 3.3E-19 104.5 11.1 108 159-279 1-108 (108)
118 cd08345 Fosfomycin_RP Fosfomyc 99.6 3.6E-14 7.8E-19 103.5 13.1 109 26-147 1-111 (113)
119 cd08362 BphC5-RrK37_N_like N-t 99.6 2.7E-14 5.9E-19 105.3 12.3 113 152-282 2-118 (120)
120 cd07235 MRD Mitomycin C resist 99.6 5.1E-14 1.1E-18 104.2 13.3 113 24-145 1-121 (122)
121 cd07262 Glo_EDI_BRP_like_19 Th 99.6 7.5E-14 1.6E-18 103.4 14.1 114 24-145 1-122 (123)
122 cd08349 BLMA_like Bleomycin bi 99.6 1.1E-13 2.3E-18 100.7 14.7 109 28-146 3-112 (112)
123 cd07267 THT_Oxygenase_N N-term 99.6 3.5E-14 7.7E-19 103.7 12.0 109 152-281 2-110 (113)
124 cd08354 Glo_EDI_BRP_like_13 Th 99.6 3.9E-14 8.4E-19 104.7 12.4 114 154-281 1-122 (122)
125 TIGR02295 HpaD 3,4-dihydroxyph 99.6 7.7E-14 1.7E-18 119.3 15.8 121 19-148 132-257 (294)
126 cd08349 BLMA_like Bleomycin bi 99.6 5.3E-14 1.1E-18 102.3 12.4 109 158-280 3-112 (112)
127 cd08345 Fosfomycin_RP Fosfomyc 99.6 3.1E-14 6.7E-19 103.8 10.9 109 156-281 1-111 (113)
128 cd07261 Glo_EDI_BRP_like_11 Th 99.6 5.5E-14 1.2E-18 102.7 12.2 109 157-280 2-114 (114)
129 cd07262 Glo_EDI_BRP_like_19 Th 99.6 6.1E-14 1.3E-18 103.9 12.6 114 154-279 1-122 (123)
130 cd08354 Glo_EDI_BRP_like_13 Th 99.6 1.3E-13 2.8E-18 101.9 14.2 113 24-146 1-121 (122)
131 KOG2944 Glyoxalase [Carbohydra 99.6 1.2E-14 2.7E-19 106.6 8.2 119 153-282 42-169 (170)
132 KOG2943 Predicted glyoxalase [ 99.6 1.8E-14 3.8E-19 112.8 9.3 128 150-290 14-152 (299)
133 cd07254 Glo_EDI_BRP_like_20 Th 99.6 1.2E-13 2.6E-18 101.9 13.5 112 155-282 3-118 (120)
134 COG3324 Predicted enzyme relat 99.6 9.2E-14 2E-18 100.8 12.4 120 151-282 7-126 (127)
135 cd06587 Glo_EDI_BRP_like This 99.6 1.5E-13 3.3E-18 99.0 13.7 112 26-144 1-112 (112)
136 cd08344 MhqB_like_N N-terminal 99.6 1.7E-13 3.7E-18 99.8 13.9 108 22-148 1-110 (112)
137 cd07244 FosA FosA, a Fosfomyci 99.6 7.5E-14 1.6E-18 103.2 12.0 109 153-282 1-111 (121)
138 COG3324 Predicted enzyme relat 99.6 4.2E-13 9.1E-18 97.3 15.0 121 19-148 5-126 (127)
139 KOG2944 Glyoxalase [Carbohydra 99.5 4.5E-14 9.8E-19 103.7 9.7 124 21-147 20-168 (170)
140 cd09012 Glo_EDI_BRP_like_24 Th 99.5 8.8E-14 1.9E-18 103.3 11.5 113 154-280 1-123 (124)
141 cd09012 Glo_EDI_BRP_like_24 Th 99.5 1.2E-13 2.7E-18 102.5 12.3 113 24-146 1-123 (124)
142 cd07254 Glo_EDI_BRP_like_20 Th 99.5 2.9E-13 6.4E-18 99.8 14.2 112 25-148 3-118 (120)
143 cd08350 BLMT_like BLMT, a bleo 99.5 1.3E-13 2.9E-18 101.7 12.1 108 156-281 5-119 (120)
144 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1.7E-13 3.8E-18 101.6 12.7 113 26-146 2-124 (125)
145 cd07235 MRD Mitomycin C resist 99.5 1.9E-13 4.1E-18 101.2 12.7 113 154-279 1-121 (122)
146 cd08350 BLMT_like BLMT, a bleo 99.5 3.1E-13 6.8E-18 99.7 13.9 108 26-147 5-119 (120)
147 TIGR03213 23dbph12diox 2,3-dih 99.5 2.6E-13 5.6E-18 115.6 15.2 119 20-147 139-263 (286)
148 cd08344 MhqB_like_N N-terminal 99.5 2.2E-13 4.7E-18 99.3 12.5 106 153-281 2-109 (112)
149 cd07261 Glo_EDI_BRP_like_11 Th 99.5 4E-13 8.6E-18 98.2 13.4 108 27-145 2-113 (114)
150 cd06587 Glo_EDI_BRP_like This 99.5 1.9E-13 4E-18 98.6 11.6 112 156-278 1-112 (112)
151 PF13669 Glyoxalase_4: Glyoxal 99.5 1.6E-13 3.6E-18 99.4 10.9 95 25-121 1-97 (109)
152 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1.5E-13 3.2E-18 102.0 11.0 113 156-280 2-124 (125)
153 cd08356 Glo_EDI_BRP_like_17 Th 99.5 7.7E-13 1.7E-17 96.5 12.4 104 27-146 5-113 (113)
154 cd08356 Glo_EDI_BRP_like_17 Th 99.5 7.3E-13 1.6E-17 96.7 11.3 104 157-280 5-113 (113)
155 cd07251 Glo_EDI_BRP_like_10 Th 99.5 1.6E-12 3.6E-17 95.7 11.9 111 157-281 2-121 (121)
156 PF13669 Glyoxalase_4: Glyoxal 99.4 6.6E-13 1.4E-17 96.2 9.2 95 155-255 1-97 (109)
157 cd07251 Glo_EDI_BRP_like_10 Th 99.4 2.5E-12 5.4E-17 94.8 12.1 110 27-146 2-120 (121)
158 cd07250 HPPD_C_like C-terminal 99.3 2.1E-11 4.5E-16 97.2 11.3 100 21-122 1-113 (191)
159 COG2514 Predicted ring-cleavag 99.3 3.2E-11 7E-16 97.3 11.2 122 150-284 7-129 (265)
160 cd07250 HPPD_C_like C-terminal 99.2 1.4E-10 3.1E-15 92.4 9.6 99 152-256 2-113 (191)
161 TIGR01263 4HPPD 4-hydroxypheny 99.2 2.8E-10 6.1E-15 99.6 11.0 103 17-121 152-267 (353)
162 COG2764 PhnB Uncharacterized p 99.1 5.1E-09 1.1E-13 77.5 12.5 117 158-283 5-133 (136)
163 cd06588 PhnB_like Escherichia 99.1 9.3E-09 2E-13 76.6 14.2 110 28-144 4-127 (128)
164 cd06588 PhnB_like Escherichia 99.0 3.9E-09 8.4E-14 78.7 11.6 111 158-279 4-128 (128)
165 PF13468 Glyoxalase_3: Glyoxal 99.0 4.4E-09 9.6E-14 82.8 11.5 147 24-175 1-175 (175)
166 COG3565 Predicted dioxygenase 99.0 7.6E-09 1.6E-13 72.0 9.7 116 23-146 4-128 (138)
167 COG2764 PhnB Uncharacterized p 99.0 4.8E-08 1E-12 72.3 14.6 117 28-149 5-133 (136)
168 PF14506 CppA_N: CppA N-termin 99.0 2.8E-08 6E-13 70.2 12.5 113 25-148 2-115 (125)
169 COG3607 Predicted lactoylgluta 99.0 9.2E-09 2E-13 72.9 9.7 117 22-148 2-128 (133)
170 COG0346 GloA Lactoylglutathion 99.0 3.8E-09 8.2E-14 78.5 8.5 122 22-146 1-138 (138)
171 COG3607 Predicted lactoylgluta 99.0 1E-08 2.3E-13 72.6 9.8 114 153-280 3-126 (133)
172 COG3565 Predicted dioxygenase 98.9 8.5E-09 1.8E-13 71.8 8.8 119 154-284 5-132 (138)
173 COG0346 GloA Lactoylglutathion 98.9 6E-09 1.3E-13 77.4 8.3 121 153-280 2-138 (138)
174 PLN02875 4-hydroxyphenylpyruva 98.9 1.6E-08 3.4E-13 88.4 10.6 101 19-121 176-295 (398)
175 PF14696 Glyoxalase_5: Hydroxy 98.7 5.7E-08 1.2E-12 72.3 8.0 122 19-150 5-129 (139)
176 PRK01037 trmD tRNA (guanine-N( 98.6 3E-07 6.5E-12 77.8 10.4 107 22-148 246-355 (357)
177 PRK01037 trmD tRNA (guanine-N( 98.6 3.8E-07 8.3E-12 77.1 10.0 105 152-280 246-353 (357)
178 PRK10148 hypothetical protein; 98.5 5.3E-06 1.2E-10 63.1 12.3 118 158-284 6-144 (147)
179 PRK10148 hypothetical protein; 98.4 2.8E-05 6E-10 59.2 15.3 116 28-151 6-145 (147)
180 COG3185 4-hydroxyphenylpyruvat 98.3 1.3E-06 2.8E-11 73.4 7.0 100 20-121 164-274 (363)
181 KOG0638 4-hydroxyphenylpyruvat 98.3 1.8E-06 3.8E-11 71.2 5.7 128 152-287 16-154 (381)
182 PF14506 CppA_N: CppA N-termin 98.2 6E-05 1.3E-09 53.5 11.2 114 155-284 2-117 (125)
183 PF14696 Glyoxalase_5: Hydroxy 98.0 0.0002 4.4E-09 53.4 11.4 118 153-285 9-130 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.8 0.00011 2.3E-09 57.8 7.3 87 154-250 1-101 (175)
185 PF15067 FAM124: FAM124 family 96.8 0.016 3.5E-07 46.5 9.4 105 22-144 127-235 (236)
186 PF14507 CppA_C: CppA C-termin 96.6 0.0037 8.1E-08 43.5 4.0 92 154-278 6-100 (101)
187 PF06983 3-dmu-9_3-mt: 3-demet 96.5 0.16 3.5E-06 36.8 12.5 96 32-145 11-116 (116)
188 PF06983 3-dmu-9_3-mt: 3-demet 96.1 0.22 4.7E-06 36.1 11.5 99 162-279 11-116 (116)
189 PF15067 FAM124: FAM124 family 95.7 0.098 2.1E-06 42.1 8.7 104 152-277 127-234 (236)
190 PF14507 CppA_C: CppA C-termin 95.3 0.048 1E-06 38.0 5.0 90 23-144 5-100 (101)
191 PTZ00039 40S ribosomal protein 71.8 18 0.00039 26.1 5.9 60 229-289 27-101 (115)
192 PF13670 PepSY_2: Peptidase pr 68.9 17 0.00037 24.3 5.1 46 232-283 30-75 (83)
193 COG0051 RpsJ Ribosomal protein 67.0 14 0.0003 26.1 4.3 49 225-274 10-58 (104)
194 cd04895 ACT_ACR_1 ACT domain-c 66.5 23 0.0005 23.2 5.1 51 226-276 4-55 (72)
195 PF13670 PepSY_2: Peptidase pr 64.0 27 0.0006 23.3 5.4 46 102-149 30-75 (83)
196 COG4747 ACT domain-containing 61.8 36 0.00079 24.6 5.6 91 21-119 39-135 (142)
197 cd04882 ACT_Bt0572_2 C-termina 59.8 21 0.00046 22.0 4.1 26 92-117 39-64 (65)
198 TIGR01046 S10_Arc_S20_Euk ribo 58.1 45 0.00098 23.3 5.7 44 230-274 12-55 (99)
199 COG3865 Uncharacterized protei 57.3 81 0.0018 23.7 9.7 34 233-281 91-124 (151)
200 cd04883 ACT_AcuB C-terminal AC 49.5 39 0.00084 21.4 4.1 29 222-254 41-71 (72)
201 PF06185 YecM: YecM protein; 47.6 1.4E+02 0.003 23.6 9.4 86 21-110 32-124 (185)
202 cd04897 ACT_ACR_3 ACT domain-c 46.6 83 0.0018 20.7 5.2 52 226-277 4-56 (75)
203 COG3865 Uncharacterized protei 45.9 1.3E+02 0.0028 22.7 13.1 111 21-147 3-124 (151)
204 COG4747 ACT domain-containing 44.4 35 0.00076 24.6 3.3 84 95-180 44-134 (142)
205 PF06185 YecM: YecM protein; 43.6 1.6E+02 0.0035 23.2 7.9 78 153-232 34-115 (185)
206 PF07063 DUF1338: Domain of un 42.0 60 0.0013 27.9 5.1 30 89-118 181-216 (302)
207 PF02208 Sorb: Sorbin homologo 40.8 17 0.00036 21.2 1.1 24 153-176 11-34 (47)
208 cd04900 ACT_UUR-like_1 ACT dom 40.2 73 0.0016 20.4 4.3 52 226-277 4-57 (73)
209 cd07268 Glo_EDI_BRP_like_4 Thi 39.7 1.7E+02 0.0036 22.2 8.2 76 154-232 2-82 (149)
210 PRK12271 rps10p 30S ribosomal 38.9 73 0.0016 22.5 4.3 44 230-274 13-56 (102)
211 PF09066 B2-adapt-app_C: Beta2 37.0 1.5E+02 0.0033 20.9 7.0 69 100-172 35-107 (114)
212 PF09142 TruB_C: tRNA Pseudour 36.7 68 0.0015 19.7 3.4 42 232-283 5-46 (56)
213 COG5397 Uncharacterized conser 36.3 36 0.00077 28.6 2.7 51 225-281 160-211 (349)
214 cd04927 ACT_ACR-like_2 Second 35.3 1.3E+02 0.0028 19.6 5.7 49 226-274 3-53 (76)
215 cd04906 ACT_ThrD-I_1 First of 34.9 80 0.0017 21.1 4.0 27 92-118 40-70 (85)
216 CHL00135 rps10 ribosomal prote 31.8 96 0.0021 21.8 4.0 47 227-274 15-61 (101)
217 cd04908 ACT_Bt0572_1 N-termina 30.6 98 0.0021 19.3 3.7 23 95-117 42-64 (66)
218 PRK00596 rpsJ 30S ribosomal pr 29.9 1.1E+02 0.0023 21.5 4.0 45 229-274 14-58 (102)
219 PF08445 FR47: FR47-like prote 29.5 1.7E+02 0.0037 19.5 4.9 24 28-52 59-82 (86)
220 KOG4657 Uncharacterized conser 29.4 1.3E+02 0.0028 24.5 4.7 39 161-202 144-182 (246)
221 KOG4657 Uncharacterized conser 29.3 1.2E+02 0.0025 24.8 4.4 20 32-51 145-164 (246)
222 PRK11700 hypothetical protein; 29.2 2.9E+02 0.0063 21.9 10.2 79 21-102 37-120 (187)
223 PF07063 DUF1338: Domain of un 28.5 57 0.0012 28.0 2.9 30 219-252 181-216 (302)
224 PHA02754 hypothetical protein; 28.1 1.5E+02 0.0033 18.3 3.9 44 103-148 20-63 (67)
225 PTZ00330 acetyltransferase; Pr 27.7 98 0.0021 22.6 3.8 27 23-52 115-141 (147)
226 TIGR01049 rpsJ_bact ribosomal 27.7 1.1E+02 0.0024 21.3 3.7 46 228-274 10-55 (99)
227 TIGR03884 sel_bind_Methan sele 25.9 1.6E+02 0.0034 19.4 3.8 29 225-253 19-47 (74)
228 cd04925 ACT_ACR_2 ACT domain-c 25.5 1.9E+02 0.0042 18.6 4.6 49 227-275 4-54 (74)
229 cd04885 ACT_ThrD-I Tandem C-te 24.2 1.6E+02 0.0034 18.5 3.8 26 92-117 38-66 (68)
230 PRK11700 hypothetical protein; 22.9 3.9E+02 0.0084 21.2 10.5 78 152-232 38-120 (187)
231 PF11080 DUF2622: Protein of u 22.6 1.4E+02 0.003 20.8 3.3 31 101-146 21-51 (96)
232 PRK00969 hypothetical protein; 21.2 1.9E+02 0.0042 26.7 4.8 76 102-181 325-406 (508)
233 PF00583 Acetyltransf_1: Acety 20.7 1.6E+02 0.0034 18.7 3.4 26 22-48 57-83 (83)
234 COG1791 Uncharacterized conser 20.5 1.7E+02 0.0037 22.8 3.7 81 101-182 78-163 (181)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=1e-45 Score=313.72 Aligned_cols=284 Identities=76% Similarity=1.267 Sum_probs=233.6
Q ss_pred CCCCCCCCchhhccCCcCCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeec
Q 022831 2 AEASPAVANAELLEWPKKDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 81 (291)
|+||-+.+.+.+.+|+.|++.+|.|+.|.|+|++++++||+++|||++..+...++..+...++..++....+.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 67888999999999999999999999999999999999999999999987655555555567776655455667777654
Q ss_pred CCCCcccCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCCCCCceeeeeee
Q 022831 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
.+......+.++.|++|.|+|+++++++|.++|+++...+...+++...++|++||+|+.|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 44334445668899999999999999999999999888877776655556889999999999999998899999999999
Q ss_pred CCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHHHHHHH
Q 022831 162 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~~~~l~ 241 (291)
+|++++.+||+++|||+.......++..|...++...+......+++....+...+..+++.+|++|.|+|++++++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999987654444555766666543322334566655443333445789999999999999999999
Q ss_pred HHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhhhhh
Q 022831 242 LVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 289 (291)
+++|+++..+|...|+.+.++++|+||||+.|+|+++++++++|+
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 999999999998888755688999999999999999999999984
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=218.99 Aligned_cols=259 Identities=46% Similarity=0.805 Sum_probs=218.0
Q ss_pred hhccCCcCCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCC-----------CceeeEEeeccCCCcceEEEeee
Q 022831 12 ELLEWPKKDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTY 80 (291)
Q Consensus 12 ~~~~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~ 80 (291)
.+..|.+.+-.+.-|+.+.|.|.+++++||+++|||++...++.++ +.|.-.++++|+..++|+++|+.
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 6778888889999999999999999999999999999998888777 67778889999999999999999
Q ss_pred cCCCCcccCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCCCCCceeeeee
Q 022831 81 NYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTPEPLCQVMLR 160 (291)
Q Consensus 81 ~~~~~~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~~~~~~hv~l~ 160 (291)
+++...+..|+++.||.+.++|+-...+.+..-|.+ ..| ...+++.||||+.++|++..+.+.++..|+|+
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g-~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~ 156 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK--------GSG-CGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLN 156 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccc-eEEEEEECCCCcEEEEeccCCCCCCeEEEEEE
Confidence 999999999999999999999987776666655532 122 33478999999999999988999999999999
Q ss_pred eCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHHHHHH
Q 022831 161 VGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVV 240 (291)
Q Consensus 161 v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~~~~l 240 (291)
|.|+++++.||.+.|||++.+. +..++..++++++. ...|||+.+.+...+..+.|...+++..+++..+.+.+
T Consensus 157 VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i 230 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI 230 (299)
T ss_pred ehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH
Confidence 9999999999999999998764 23356677777644 58999999888877777788888888888999998888
Q ss_pred HHHHHhhCCeeeecccccCCCC---ceEEEEECCCCCeEEEEechhhhhhhh
Q 022831 241 NLVTQELGGKITRQPGPIPGLN---TKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 241 ~~~~~~~G~~~~~~p~~~~~~~---~~~~~~~DPdG~~iel~~~~~~~~~~~ 289 (291)
+..+.++..+..+.++.+ ..++.+.||||+.|+++.++++++.++
T Consensus 231 ----K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 231 ----KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ----HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 888777766655433322 245668999999999999999998764
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=3.1e-32 Score=233.68 Aligned_cols=236 Identities=22% Similarity=0.240 Sum_probs=165.6
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v 100 (291)
+++|+|+.|.|+|++++++||+++|||++..+... .+++..........+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 67899999999999999999999999998764321 23333211112223333321 123788999999
Q ss_pred C---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC---------------------CCCcee
Q 022831 101 E---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~---------------------~~~~~h 156 (291)
+ |+++++++|.++|+++...+.....+....+||+||+|+.|||.+.... ..+|+|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7899999999999998755432222222358899999999999985421 235899
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccce-eeeeeccCCCCcceEEEEeEecCceeeccCce-eeEEEEEecChH
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKC-ALAMLGYAEEDQTTVLELAYSYGVTEYTKGNA-YAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g-~~hia~~v~di~ 234 (291)
|.|.|+|++++.+||+++|||+...+...+++.. ...++..+.. ...+.+... .+.| ++|+||.|+|++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVGD-------PEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--CcccceecC-------CCCCceEEEEEEcCCHH
Confidence 9999999999999999999999876543333221 2334432221 122222210 1234 899999999755
Q ss_pred H---HHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 235 K---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 235 ~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+ ++++| +++|+++..+|.++.....+++||+|||||.|||+...
T Consensus 220 ~v~~~~~~l----~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 266 (303)
T TIGR03211 220 DVLKAADVM----SKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGGG 266 (303)
T ss_pred HHHHHHHHH----HhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecCC
Confidence 5 55666 99999998888776654567899999999999998543
No 4
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=7.1e-32 Score=230.62 Aligned_cols=234 Identities=23% Similarity=0.287 Sum_probs=166.4
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~ 99 (291)
+|.+|+||.|.|+|++++++||+++|||++..+.. . ..++..........+.+... ...+..|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~----~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E----YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C----eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999876422 1 34443211111223333321 12367899999
Q ss_pred EC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC---------------CCCCceeeeeee
Q 022831 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~---------------~~~~~~hv~l~v 161 (291)
|+ |+++++++|+++|+++...+. +++ ...+||+||+|+.|||+.... .+.+++|+.|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~-~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQ-PEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCC-ceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 789999999999999776433 222 245899999999999987431 134689999999
Q ss_pred CCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHH---HHH
Q 022831 162 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK---SAE 238 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~---~~~ 238 (291)
+|++++.+||+++|||++..+...+.+.....++..... ++.+.+.. ..+++++|+||.|+|.++ +++
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~ 215 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACD 215 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeec-------CCCCceeeEEEEcCCHHHHHHHHH
Confidence 999999999999999998766433333333344432221 22333321 124689999999999554 456
Q ss_pred HHHHHHHhhCCe--eeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 239 VVNLVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 239 ~l~~~~~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+| +++|++ +..+|+++..++..++|++||+||.|||+...
T Consensus 216 ~l----~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 216 IL----ASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HH----HhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 66 999988 66777766554557899999999999998854
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=2.2e-31 Score=226.54 Aligned_cols=234 Identities=18% Similarity=0.217 Sum_probs=166.4
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v 100 (291)
|.+|.|+.|.|+|++++++||+++|||++..... ++ ..|+..+.. ...+.+.... ..+..+++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSR--AHRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCC--ceEEEEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999998754311 11 335555322 2233333221 12567899999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCccC--CCCceEEEEEECCCCcEEEEEecCC--------C----------CCCceee
Q 022831 101 ED---VYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDPDGYIFELIQRGP--------T----------PEPLCQV 157 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dP~G~~iel~~~~~--------~----------~~~~~hv 157 (291)
+| ++++.++|+++|+++...+... ..+....++|.||+||.+|++.... . +.+|.||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 8899999999999987654321 1122345899999999999986431 1 2368999
Q ss_pred eeeeCCchhhHHHHHHhcCCeeeeeccC--ccc-ceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChH
Q 022831 158 MLRVGDLGRSIKFYEKALGMKLLRTIDS--PEL-KCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~ 234 (291)
.|.|+|++++.+||+++|||++...... +++ .+...++..++. +..+.+... +..++++|++|.|+|++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEEEEcCCHH
Confidence 9999999999999999999998765432 211 122345543322 233444221 12468999999999877
Q ss_pred H---HHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 235 K---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 235 ~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+ +++++ +++|+ ....|++++.++.+++|++||+|++||+...
T Consensus 219 ~v~~~~~~l----~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 219 DVGLALDRV----DADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HHHHHHHHH----HHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 7 56777 99999 6667777766667889999999999999874
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.90 E-value=1.6e-21 Score=170.14 Aligned_cols=223 Identities=21% Similarity=0.313 Sum_probs=153.1
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCC-c---c--cCCCCceE
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-S---Y--DIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~--~~g~~~~~ 95 (291)
++++|+.|.|+|++++.+||++.|||++........+. ....+.. + ...+++..+.... . + ..|+++++
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~--G--~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQ--G--QINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEe--C--CEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 47899999999999999999999999998763222221 2233332 2 2445555432221 1 1 26789999
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC---------------------C----
Q 022831 96 LAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP---------------------T---- 150 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~---------------------~---- 150 (291)
|||.|+|++++++++.++|+++..+|.....|...+.-+..++|..+.|++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999887765431122333445666777777665321 0
Q ss_pred CCCceeeeeeeC--CchhhHHHHHHhcCCeeeeeccCcc--cceeeeeeccCCCCcceEEEEeEecCc--e-------ee
Q 022831 151 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPE--LKCALAMLGYAEEDQTTVLELAYSYGV--T-------EY 217 (291)
Q Consensus 151 ~~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-------~~ 217 (291)
-.+++|+++.|+ |++++.+||+++|||++....+... .......+..+ .....|+|..+... . ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~--~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP--DGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC--CCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 113999999999 9999999999999999876543211 11221222211 22466777653111 1 12
Q ss_pred ccCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecc
Q 022831 218 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 218 ~~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p 255 (291)
..|.|++||||.|+|++++++++ ++.|+++...|
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 24789999999999999999999 99999998877
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.89 E-value=3.5e-21 Score=154.25 Aligned_cols=196 Identities=20% Similarity=0.282 Sum_probs=142.8
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCC-CCcccCCCCceEEE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG-VTSYDIGTGFGHLA 97 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~~g~~~~~i~ 97 (291)
..-+.+..|+|.|+|++.+..||+++||+++..+... .+.++.+.. ..+.|.+... ..+.....|+.|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE---EEEEEEeCCCCCCCCccccceeeee
Confidence 4567899999999999999999999999999876543 455665432 3455555322 22223455999999
Q ss_pred EEECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC------------------------
Q 022831 98 IATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT------------------------ 150 (291)
Q Consensus 98 ~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~------------------------ 150 (291)
|.+++ +..+..++...|..+.+. .+.. .-..+|+.||+||.||+..+++.
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~Ga-~DH~--vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLVGA-SDHL--VSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccccc-Ccch--hheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99986 777788999999887622 2222 22358999999999999998642
Q ss_pred ------------CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceee-
Q 022831 151 ------------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEY- 217 (291)
Q Consensus 151 ------------~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~- 217 (291)
...|.||.|.|.|++++.+||.++|||+...+.+ ...|++.++++++.-+..+...+...-
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~ 227 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRN 227 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCC
Confidence 1238999999999999999999999999887622 346788788877766665554433321
Q ss_pred ccCceeeEEEEEecC
Q 022831 218 TKGNAYAQVAISTDD 232 (291)
Q Consensus 218 ~~~~g~~hia~~v~d 232 (291)
....|+..+.+.+++
T Consensus 228 ~~~~GLa~~~i~~~~ 242 (265)
T COG2514 228 ANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCcceEEEEcCC
Confidence 123478888888877
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.86 E-value=4.3e-20 Score=142.07 Aligned_cols=141 Identities=61% Similarity=1.030 Sum_probs=107.4
Q ss_pred chhhccCCcCCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccC
Q 022831 10 NAELLEWPKKDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDI 89 (291)
Q Consensus 10 ~~~~~~~~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 89 (291)
..++..-++...++|.|+.|.|+|++++.+||+++|||++..+...+...+..++++.+.......+++...........
T Consensus 4 ~~~~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 83 (150)
T TIGR00068 4 SGDLVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDL 83 (150)
T ss_pred ccccccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccC
Confidence 34566677789999999999999999999999999999997765544444445666654433445566554333233334
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC
Q 022831 90 GTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 90 g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~ 150 (291)
+.+..|++|.|+|+++++++|.++|+++..++...+.+....+|++||+|+.|||++....
T Consensus 84 ~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 84 GNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred CCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 5578899999999999999999999998877765555555568899999999999987643
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.86 E-value=1.3e-20 Score=150.83 Aligned_cols=129 Identities=33% Similarity=0.591 Sum_probs=105.6
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCC---------------CcceEEEEeEecCcee
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEE---------------DQTTVLELAYSYGVTE 216 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~~ 216 (291)
-.+.|++|+|.|++++.+||+++|||++..+.+.++.++.++|++.++. .....|||..+++...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 4589999999999999999999999999888877777889999864331 1135799988766541
Q ss_pred ------eccC----ceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhh
Q 022831 217 ------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 217 ------~~~~----~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 286 (291)
+..+ .|++|++|.|+|++++++++ +++|+++...|....+ .+++|++||||++|||++.+.+.+
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~~ 227 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIGT 227 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccccc
Confidence 3333 48999999999999999999 9999999987765433 578899999999999999887654
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=2.5e-20 Score=143.35 Aligned_cols=138 Identities=44% Similarity=0.783 Sum_probs=105.9
Q ss_pred CCCCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEE
Q 022831 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~ 228 (291)
....++.|+.|.|+|++++.+||+++|||++......++..+...+++.+.......+++....+..+...+.++.|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 34567999999999999999999999999987654444444455566544333344566644333222233468899999
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhhhhhc
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~ 290 (291)
.|+|++++.+++ .++|+++..+|...+..+.+.+||+||||+.|||++..+-.+.||.
T Consensus 93 ~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~ 150 (150)
T TIGR00068 93 GVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLGN 150 (150)
T ss_pred ecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhccC
Confidence 999999999999 9999999888866555445688999999999999999999998873
No 11
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.85 E-value=2.4e-19 Score=155.24 Aligned_cols=222 Identities=17% Similarity=0.240 Sum_probs=158.2
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCc--eeeEEeeccCCCcceEEEeeecCCC-----------------
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEK--YSNAFLGFGPEQSYFVVELTYNYGV----------------- 84 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~~~----------------- 84 (291)
++||.+.|.|..++..||+..|||+.+.......+. +....++ .++..+++ ..+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r--~g~i~fv~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR--SGDLVFLF--TAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE--eCCEEEEE--eCCCCCccccccccccccccccc
Confidence 589999999999999999999999998765432222 2233333 33444443 332111
Q ss_pred --Cc------ccCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCC----CceEEEEEECCCCcEEEEEecCC---
Q 022831 85 --TS------YDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKG----MTTHFAFVKDPDGYIFELIQRGP--- 149 (291)
Q Consensus 85 --~~------~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~----g~~~~~~~~dP~G~~iel~~~~~--- 149 (291)
.. ..+|++++.|+|+|+|++++++++.++|++...+|..... |...++-++.++|..+.|++...
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1377899999999999999999999999998877665432 22344557888888888887421
Q ss_pred ----------------C----CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCccc-----ceeeeeeccCCCCcce
Q 022831 150 ----------------T----PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL-----KCALAMLGYAEEDQTT 204 (291)
Q Consensus 150 ----------------~----~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 204 (291)
. -.+|+|+++.|++++.+..||+++|||+.....+.++. +.....+..+ +...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcE
Confidence 0 12599999999999999999999999998765443221 1344444433 2346
Q ss_pred EEEEeEecC---ce-------eeccCceeeEEEEEecChHHHHHHHHHHHHhh----CCeeeecc
Q 022831 205 VLELAYSYG---VT-------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 255 (291)
Q Consensus 205 ~l~l~~~~~---~~-------~~~~~~g~~hia~~v~di~~~~~~l~~~~~~~----G~~~~~~p 255 (291)
.|+|..+.. .. ....|+|++||||.|+||.+++++| ++. |++++..|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 677766432 11 1345789999999999999999999 898 99999865
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.84 E-value=1.9e-19 Score=134.91 Aligned_cols=124 Identities=53% Similarity=0.958 Sum_probs=95.9
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHHHH
Q 022831 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMV 107 (291)
Q Consensus 28 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~~~ 107 (291)
.|.|+|++++++||+++|||++..+...+...+..+++..++......+++....+...+..+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999998766555556667777665433444566654433334445668899999999999999
Q ss_pred HHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCCC
Q 022831 108 ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~~ 151 (291)
++|+++|+++..++.+.+++....+|++||||+.|||++....+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 99999999988766666666555678899999999999977543
No 13
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=3.6e-19 Score=142.65 Aligned_cols=129 Identities=34% Similarity=0.651 Sum_probs=103.6
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCC---------------CcceEEEeeecCCC
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPE---------------QSYFVVELTYNYGV 84 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~ 84 (291)
.-..+.|+.|.|+|++++++||+++|||++..+.+.+++++..++++.++. .....|||.++.+.
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 346799999999999999999999999999998888888888888865321 11357899876553
Q ss_pred C------cccCC----CCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC
Q 022831 85 T------SYDIG----TGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 85 ~------~~~~g----~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~ 150 (291)
. .+..| .|+.||||.|+|+++++++|+++|+++...|....+ ..++|++||||++|||++....
T Consensus 152 e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 152 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccc
Confidence 3 13333 489999999999999999999999999877654433 3458899999999999987643
No 14
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=5.3e-19 Score=139.00 Aligned_cols=147 Identities=35% Similarity=0.614 Sum_probs=108.3
Q ss_pred CCCCCCCCCch--hhccCCcCC--ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCC-----
Q 022831 1 MAEASPAVANA--ELLEWPKKD--KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ----- 71 (291)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~--~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~----- 71 (291)
||.||.-+++. ++.+++... -.++.|+.|.|.|++++++||+++|||++..+...++..+..++++.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~ 80 (185)
T PLN03042 1 MASASKESAANNPGLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTD 80 (185)
T ss_pred CCCCCcCCcccCcccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcc
Confidence 67777666554 344444333 367999999999999999999999999998887776777777777643210
Q ss_pred ----------cceEEEeeecCCCCc------cc----CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEE
Q 022831 72 ----------SYFVVELTYNYGVTS------YD----IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHF 131 (291)
Q Consensus 72 ----------~~~~l~l~~~~~~~~------~~----~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~ 131 (291)
....|+|..+.+... +. .+.|+.||+|.|+|+++++++|.++|+++...|.... + ..+
T Consensus 81 ~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~-~-~~~ 158 (185)
T PLN03042 81 PPERTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK-M-KGL 158 (185)
T ss_pred hhhcccccccCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC-c-eeE
Confidence 234688876543221 22 2248999999999999999999999999886654322 2 345
Q ss_pred EEEECCCCcEEEEEecCC
Q 022831 132 AFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 132 ~~~~dP~G~~iel~~~~~ 149 (291)
+|++||+|+.|||++...
T Consensus 159 ~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 159 AFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred EEEECCCCCEEEEEECCC
Confidence 788999999999998754
No 15
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=1.2e-19 Score=135.98 Aligned_cols=124 Identities=47% Similarity=0.830 Sum_probs=94.4
Q ss_pred eeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHHH
Q 022831 158 MLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~~ 237 (291)
.|.|+|++++.+||+++|||++......++..+.+.++..++......+++....+...+..+.+++|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987665555555667777654433345566655443333344568999999999999999
Q ss_pred HHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 238 EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 238 ~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
+++ ++.|+++...|.+.++.+.+++||+||||++|||++..+..
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 999 99999998877666553345688999999999999977543
No 16
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.80 E-value=1.3e-18 Score=136.79 Aligned_cols=128 Identities=30% Similarity=0.585 Sum_probs=98.3
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCC---------------cceEEEEeEecCce
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED---------------QTTVLELAYSYGVT 215 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~ 215 (291)
..++.|+.|+|.|++++++||+++|||++..+...++..+.+++++.+... ....|+|..+.+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 356999999999999999999999999988876555656777777632210 13578887654322
Q ss_pred e------ec----cCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhh
Q 022831 216 E------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 216 ~------~~----~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
. +. .+.|+.|++|.|+|++++++++ ++.|+++...|.... +.+++||+||||++|||++.+-.
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCCc
Confidence 1 21 1248999999999999999999 999999987765332 35678899999999999997654
No 17
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=6.5e-18 Score=124.59 Aligned_cols=115 Identities=43% Similarity=0.762 Sum_probs=87.8
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCC-----------CceeeEEeeccCCCcceEEEeeecCCCCcccCC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIG 90 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g 90 (291)
.++.|++|.|+|+++|++||+++|||++..+.+.++ +.+..++++..+......++|..+.+..++..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999887665554 344445565544456678999987766556656
Q ss_pred CCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 91 TGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 91 ~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
.+ |++|.|++. ++.++|+++|+++...+. + ++|++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 667777766 455999999999876443 2 5889999999999974
No 18
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=4.9e-18 Score=129.35 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=88.8
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCC-----------CceeeEEeeccCCCcceEEEeeecCCCC----
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTYNYGVT---- 85 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~---- 85 (291)
+.+++||+|.|+|++++.+||++ |||++..+...+. ......++... .....++|.....+.
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCc
Confidence 57899999999999999999998 9998865432211 12233444422 234456666532111
Q ss_pred ---cccCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 86 ---SYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ---~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
....+.|+.||||.|+|+++++++|+++|+++..++....++.+ .+|++||+|+.|||++.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r-~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYR-LCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeE-EEEEECCCCCEEEeeec
Confidence 11234578899999999999999999999998876655555544 58999999999999984
No 19
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.79 E-value=2e-18 Score=130.49 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=94.6
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee------eccCceeeEEE
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE------YTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hia 227 (291)
++|+.|.|+|++++.+||+++|||++......++ ....++..+ ...+.+........ ...+.+++|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999877643321 223333322 34555543222111 11356889999
Q ss_pred EEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhhhh
Q 022831 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~ 288 (291)
|.|+|++++++++ +++|+++..+|...++ +.+.++++||||+.|||++++.+.+++
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~~~ 130 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKGPF 130 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCCcc
Confidence 9999999999999 9999999998887454 678999999999999999999887654
No 20
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=9.4e-18 Score=125.60 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=85.2
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCC-CceeeEEeeccCCCcceEEEeeecCC-C--CcccCCCCce
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-EKYSNAFLGFGPEQSYFVVELTYNYG-V--TSYDIGTGFG 94 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~-~--~~~~~g~~~~ 94 (291)
+.+.+|+||.|.|+|++++.+||+++|||++..+...+. ..+. ..+..+ + ...+++..... . .......++.
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~--~-~~~l~l~~~~~~~~~~~~~~~~g~~ 77 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALN--G-QYVIELFSFPFPPERPSRPEACGLR 77 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecC--C-CcEEEEEEecCCCCCCCCCCCCcee
Confidence 467889999999999999999999999999864322211 1111 122221 1 23455543211 1 1112234788
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 95 HLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
|++|.|+|+++++++|.+.|+++...+....+|. .++|++||+|+.||+++.
T Consensus 78 hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 78 HLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEeC
Confidence 9999999999999999999999764433333444 458999999999999873
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=6.2e-18 Score=125.03 Aligned_cols=120 Identities=43% Similarity=0.742 Sum_probs=91.0
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCc-eeeccCceeeEEEEEecC
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-TEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hia~~v~d 232 (291)
+.|+.+.|+|++++.+||+++||+++......+++.+...++..++......+++....+. .+...+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876544343345555666443112455666543322 222334578999999999
Q ss_pred hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
++++++++ +++|+++..+|... .+.+++||+|||||+|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 99999999 99999999988765 3467899999999999985
No 22
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=5.1e-18 Score=125.15 Aligned_cols=114 Identities=31% Similarity=0.548 Sum_probs=85.8
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcc-----------cceeeeeeccCCCCcceEEEEeEecCceeeccCc
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGN 221 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (291)
++.|++|+|+|+++|.+||+++|||++..+...++ +.+...++...+...+..++|..+++..+++.+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999877654443 3444444544333345789998877765555555
Q ss_pred eeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 222 g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
+ |++|.|++. ++.+++ +++|+++...|. .+++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666665 566888 999998876554 27899999999999985
No 23
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=3.4e-18 Score=145.28 Aligned_cols=134 Identities=44% Similarity=0.753 Sum_probs=103.1
Q ss_pred CCCCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEE
Q 022831 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~ 228 (291)
....++.|+.|.|+|++++.+||+++|||+...+...++..+...++..+....+..+++....+......++|+.|++|
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 34577999999999999999999999999987654434444555566544434456677755433323334568899999
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhh
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 286 (291)
.|+|++++++++ +++|+++...|...++++.+++||+||||+.|||+++.....
T Consensus 100 ~v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~ 153 (286)
T PLN02300 100 AVEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPE 153 (286)
T ss_pred EeCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCC
Confidence 999999999999 999999998887776645677899999999999999876544
No 24
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=1.7e-17 Score=122.72 Aligned_cols=120 Identities=51% Similarity=0.931 Sum_probs=89.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCC-CcccCCCCceEEEEEECC
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TSYDIGTGFGHLAIATED 102 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~g~~~~~i~~~v~d 102 (291)
+.|+.|.|+|++++.+||+++|||++......+++.+..+++..........+++....+. .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999987654444445566676533112344555543222 233344578899999999
Q ss_pred HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEE
Q 022831 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~ 145 (291)
++++++++.++|+++..++... ++ ..+++++||+|+.||++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~~-~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-GM-KGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-CC-ceEEEEECCCCCEEEeC
Confidence 9999999999999998877655 33 34588999999999985
No 25
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.3e-18 Score=141.05 Aligned_cols=256 Identities=19% Similarity=0.310 Sum_probs=175.4
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCC-----cccCCCCce
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-----SYDIGTGFG 94 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-----~~~~g~~~~ 94 (291)
.+.+++||.+.|.|...+.+||+..|||+.........+....+...+.++...+.+.-......+ -..+|.|+.
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 478999999999999999999999999999875433332212222223233333333222222221 124677888
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeCCccCCC--CceEEEEEECCCCcEEEEEecCCC----------------------
Q 022831 95 HLAIATEDVYKMVENIRAKGGNVTREPGPLKG--MTTHFAFVKDPDGYIFELIQRGPT---------------------- 150 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dP~G~~iel~~~~~~---------------------- 150 (291)
.+||+|+|++++.+.++++|+++..+|.+..+ |...++.++.+.-....+++....
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~~ 173 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLPK 173 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCCc
Confidence 99999999999999999999999988877664 445567778887666666665420
Q ss_pred --CCCceeeeeeeC--CchhhHHHHHHhcCCeeeeeccCccc-----ceeeeeeccCCCCcceEEEEeEecCc-e-----
Q 022831 151 --PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPEL-----KCALAMLGYAEEDQTTVLELAYSYGV-T----- 215 (291)
Q Consensus 151 --~~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~-~----- 215 (291)
-.+++|++.+++ .++.+.+||.+.|||...+..++..- ..+.+.+. +.+....+.+.++... .
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~ksQI 251 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKKSQI 251 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccHHHH
Confidence 135899999999 58999999999999998887664321 12223333 3333344444443211 1
Q ss_pred ----eeccCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccc--------cCCC----C--------ceEEEEECC
Q 022831 216 ----EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGP--------IPGL----N--------TKITSFVDP 271 (291)
Q Consensus 216 ----~~~~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~--------~~~~----~--------~~~~~~~DP 271 (291)
.++.|.|++|+++.++||-.+.+.+ ++.|+++..+|.. .... + ..+..=.|-
T Consensus 252 qeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De 327 (381)
T KOG0638|consen 252 QEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDE 327 (381)
T ss_pred HHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCC
Confidence 2667899999999999999999999 9999999998853 1100 0 012333788
Q ss_pred CCCeEEEEec
Q 022831 272 DGWKTVLVDN 281 (291)
Q Consensus 272 dG~~iel~~~ 281 (291)
.|.++.|+..
T Consensus 328 ~gyLLQIFTK 337 (381)
T KOG0638|consen 328 NGYLLQIFTK 337 (381)
T ss_pred CcEEeeeecc
Confidence 8888888753
No 26
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.77 E-value=2.6e-17 Score=124.41 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=89.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc------ccCCCCceEEE
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS------YDIGTGFGHLA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~g~~~~~i~ 97 (291)
|+|+.|.|+|++++++||+++|||++......+ .....++.. + ...+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~--g--~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ--G--DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc--C--CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999997754332 122333432 2 23455543222111 12456888999
Q ss_pred EEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC
Q 022831 98 IATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~ 150 (291)
|.|+|+++++++|+++|+++..+|...+++.+ .++++||+|+.|+|++.+..
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~-~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGELK-IAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeEE-EEEEeccCCcEEEEEecCCC
Confidence 99999999999999999999988887666544 58899999999999998754
No 27
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.77 E-value=9.5e-18 Score=127.75 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=85.5
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccce-eeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEE
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKC-ALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~ 229 (291)
+.+++|++|.|+|++++.+||+++|||++..+...+++.. ...++..+.. ...+.+... .+++++|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEEE
Confidence 4679999999999999999999999999766643222211 2234432222 233333221 13578999999
Q ss_pred ecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
|+|++++.+.. ++++++|+++..+|.++..++++++||+|||||+|||+..
T Consensus 75 v~d~~~l~~~~-~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAG-DIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHH-HHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99988854333 2229999999888876654456789999999999999874
No 28
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.77 E-value=1.3e-17 Score=127.09 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcc-----------cceeeeeeccCCCCcceEEEEeEecCcee----
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTE---- 216 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 216 (291)
.+++|+.|.|+|++++.+||++ |||+........+ ....+.++..+ .....++|........
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 3689999999999999999998 9998765432111 12344444422 2245677765322111
Q ss_pred ---eccCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 217 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ---~~~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
...+.|++|++|.|+|++++++++ +++|+++..+|...+ .+.+++|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 112458899999999999999999 999999987665444 357889999999999999984
No 29
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=1.4e-17 Score=125.52 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=90.3
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v 230 (291)
|.++.|+.|.|+|++++++||+++||+++...... ...++..++...+..+.+..... ...|++|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 46799999999999999999999999998655321 12344432222234555543211 136899999999
Q ss_pred cChHHHHH---HHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 231 DDVYKSAE---VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 231 ~di~~~~~---~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
+|++++.+ +| +++|+++...|.+++..+.+++||+||+|++|||+...+..
T Consensus 71 ~d~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~ 124 (134)
T cd08360 71 GDIDEVMLGGNHM----LRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYV 124 (134)
T ss_pred CCHHHHHHHHHHH----HHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccccc
Confidence 99888775 66 99999988888777765567799999999999999866554
No 30
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=4e-18 Score=131.39 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=89.4
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCc-ccceeeeeeccCCCC---cceEEEEeEecCceeeccCceeeEEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP-ELKCALAMLGYAEED---QTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~g~~hia~ 228 (291)
+|+||.|.|+|++++++||+++||+++......+ .+.....++..++.. .+..+.+.. ..+++++|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999987654332 122334455432210 011112211 11468999999
Q ss_pred EecChHHHH---HHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhh
Q 022831 229 STDDVYKSA---EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 229 ~v~di~~~~---~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 286 (291)
.|+|++++. ++| +++|+++.++|+++..+...++|++|||||.|||+......+
T Consensus 74 ~v~die~~~~~~~~L----~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~~~ 130 (153)
T cd07257 74 EVHDFDAQGLGHDYL----REKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDLVN 130 (153)
T ss_pred EcCCHHHHHHHHHHH----HHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCceeEc
Confidence 999999987 677 999999999888877655667899999999999998765544
No 31
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=6.3e-17 Score=122.76 Aligned_cols=118 Identities=19% Similarity=0.373 Sum_probs=87.3
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~ 99 (291)
|+.+|.|+.|.|+|++++++||+++|||++..+.. ...++..+ + ..+.+......+....+.+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~--g--~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN--G--LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC--C--eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 68899999999999999999999999999875422 14455443 2 23433322222222233467899999
Q ss_pred EC--CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 100 TE--DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
++ |+++++++|+++|+++...+...+++.+ .+|++||+|+.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~-~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKK-SIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCce-EEEEECCCCCEEEEEeCC
Confidence 98 9999999999999998766655555444 588999999999999765
No 32
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=4.3e-17 Score=121.12 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=84.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc---ccCCCCceEEEEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS---YDIGTGFGHLAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~g~~~~~i~~~ 99 (291)
+|+|+.|.|+|++++++||+++|||++......+..++...|+..++ ...+++.+...... .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865433333344455665532 23455554322111 1123478899999
Q ss_pred EC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
|+ |+++++++|+++|+++...|...++|.+. ++++||||+.|||
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~ 124 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEI 124 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEe
Confidence 96 48999999999999988766555555443 6799999999997
No 33
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=8.5e-17 Score=122.50 Aligned_cols=120 Identities=15% Similarity=0.172 Sum_probs=85.2
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCce-eeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY-SNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~ 97 (291)
+.+++|+||+|.|+|++++.+||+++|||++..+...+++.. ...|+..+. .. ..+.+... .+.++.|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~~-h~~~~~~~-------~~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-KP-HDIAFVGG-------PDGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-Cc-ceEEEecC-------CCCCceEEE
Confidence 457899999999999999999999999999876543333322 234554332 22 22333221 124789999
Q ss_pred EEECCHHH---HHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 98 IATEDVYK---MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
|+|+|+++ +.++|.++|+++...|.....+...++||+||+|+.|||...
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99999877 568999999998766654432233458999999999999764
No 34
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=8.5e-17 Score=119.40 Aligned_cols=122 Identities=26% Similarity=0.347 Sum_probs=84.6
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCC--CC-cccCCCCceEEE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG--VT-SYDIGTGFGHLA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~-~~~~g~~~~~i~ 97 (291)
+.+|+|++|.|+|++++.+||+++|||++......++.......+.. +.. ..+++..... .. ....+.+..|++
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~--~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLL-NGG--YQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEec-CCC--cEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 36899999999999999999999999998765332221111122222 112 2344433211 11 112345788999
Q ss_pred EEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 98 IATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
|.|+|+++++++|+++|+++...+....++.+ ++|++||+|+.|||+|
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKR-FTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCccccccccCCCceE-EEEEECCCCCEEEecC
Confidence 99999999999999999998765544444443 5889999999999975
No 35
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.74 E-value=4.8e-17 Score=125.35 Aligned_cols=119 Identities=27% Similarity=0.359 Sum_probs=86.7
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccC-CCceeeEEeeccCCCcc---eEEEeeecCCCCcccCCCCceEEEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP-EEKYSNAFLGFGPEQSY---FVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~l~~~~~~~~~~~g~~~~~i~~ 98 (291)
+|+||+|.|+|++++++||+++|||++......+ .+.....++..+..... ..+.+.. ..+.++.||||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987654433 23334566655321100 0111111 11458999999
Q ss_pred EECCHHHHH---HHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 99 ATEDVYKMV---ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.|+|++++. ++|+++|+++...++....+...++|++||+|+.|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999986 99999999988766665555555789999999999999765
No 36
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.74 E-value=5.4e-17 Score=126.18 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=88.1
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeec----cC--------------cccceeeeeeccCCCCcceEEEEeEec
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTI----DS--------------PELKCALAMLGYAEEDQTTVLELAYSY 212 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~ 212 (291)
+.+++||.|.|+|++++.+||+++|||++..+. .. ....+.+.++..++ ...|+|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 356899999999999999999999999864210 10 01124455555332 3447776643
Q ss_pred Ccee-e----ccCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeeccccc--CC-CCceEEEEECCCCCeEEEEechhh
Q 022831 213 GVTE-Y----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPI--PG-LNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 213 ~~~~-~----~~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~--~~-~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
+... . ..+.|+.|++|.|+|++++++++ +++|+++..++.+. ++ .+.+++|++|||||.|||+++..-
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 3211 1 12468999999999999999999 99998765433221 11 123789999999999999997643
No 37
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=1.7e-16 Score=119.56 Aligned_cols=117 Identities=22% Similarity=0.259 Sum_probs=85.9
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
.+|+|+.|.|+|++++++||+++|||++..... . ...++..+.......+.+..... ...++.|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 579999999999999999999999999875432 1 14455543222233444443211 1358899999999
Q ss_pred CHHHHH---HHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 102 DVYKMV---ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
|++++. ++|.++|+++...+...+.+...++|++||+|+.|||....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 988776 59999999987666555544455689999999999999754
No 38
>PRK11478 putative lyase; Provisional
Probab=99.74 E-value=5.3e-17 Score=121.48 Aligned_cols=120 Identities=20% Similarity=0.169 Sum_probs=83.1
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcc-cceeeeeeccCCCCcceEEEEeEecCce---eeccCceeeEEE
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-LKCALAMLGYAEEDQTTVLELAYSYGVT---EYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~g~~hia 227 (291)
.+++|+.|.|+|++++.+||+++|||++......++ ..+.. .+...+ ...+++....... ..+...|+.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999764321111 11111 111111 3456665422111 111235789999
Q ss_pred EEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
|.|+|++++++++ +++|+++...+. .+..+.+++||+|||||.|||++
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRV-DPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeecccc-CCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999 999999864332 23335688999999999999987
No 39
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.73 E-value=1.7e-16 Score=117.60 Aligned_cols=117 Identities=23% Similarity=0.245 Sum_probs=83.3
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~ 99 (291)
.+++|+|+.|.|+|++++++||+++|||++..... ++ ..++..........+.+... ...+..|++|.
T Consensus 1 ~~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~ 68 (122)
T cd07265 1 GVLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFK 68 (122)
T ss_pred CcceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEE
Confidence 36899999999999999999999999999875421 11 23444321122233433221 12367899999
Q ss_pred EC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
|+ |+++++++|.++|+++...|.....+....+||+||+||.||+....
T Consensus 69 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 69 VLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 97 79999999999999987654433333333589999999999998754
No 40
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.73 E-value=1.7e-16 Score=123.34 Aligned_cols=124 Identities=28% Similarity=0.337 Sum_probs=84.8
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEec--cC----------------CCceeeEEeeccCCCcceEEEeeecCC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRD--VP----------------EEKYSNAFLGFGPEQSYFVVELTYNYG 83 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~l~l~~~~~ 83 (291)
++|+||.|.|+|++++++||+++|||++..+.. .. ...+..+++..+. ...+++.+...
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 579999999999999999999999998853210 00 0123445554332 23366665432
Q ss_pred CC-cc----cCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCC-ccC-CC-CceEEEEEECCCCcEEEEEecC
Q 022831 84 VT-SY----DIGTGFGHLAIATEDVYKMVENIRAKGGNVTREP-GPL-KG-MTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 84 ~~-~~----~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~-~~~-~~-g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.. +. ..+.|..|+||.|+|+++++++|+++|+++...+ ... ++ ....++|++||||+.|||++..
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 21 11 1246899999999999999999999998754322 111 11 1124689999999999999875
No 41
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=6.1e-17 Score=120.27 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=83.8
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee---eccCceeeEEEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hia~~ 229 (291)
++.|+.|.|+|++++.+||+++|||++......+...+...++..++ ...+++........ ....+|+.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999755433222334445555432 34566654322111 1123588999999
Q ss_pred ecC---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 230 TDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
|+| ++++++++ +++|+++..+|...+. +.+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 964 78888888 9999999887754433 345578999999999983
No 42
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=9.9e-17 Score=121.63 Aligned_cols=116 Identities=14% Similarity=0.214 Sum_probs=86.2
Q ss_pred eeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChH
Q 022831 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~ 234 (291)
.||.|.|+|++++.+||+++|||++..+... ...++...+...+..+.+.. ....+++|++|.|+|++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998766421 23344422222233443321 12468999999998755
Q ss_pred ---HHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhh
Q 022831 235 ---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 286 (291)
++++++ +++|+++..+|++++..+.+++|++||+|+.|||+......+
T Consensus 69 ~v~~~~~~l----~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 69 DIGKALYRI----KAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred HHHHHHHHH----HHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceec
Confidence 456666 999999999998877666788999999999999998766554
No 43
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.72 E-value=1.6e-16 Score=117.73 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||+...... ++ .. ++...+...+..+.+.. ...+++.|++|.|+
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~-~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v~ 70 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RV-YLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKVL 70 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eE-EEEccCCCcccEEEecc-------CCCCCeeEEEEEeC
Confidence 568999999999999999999999999765431 11 12 22211111223444422 11357899999997
Q ss_pred ---ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 232 ---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
|++++++++ +++|+++...|.......++.+||+|||||+||+++..+
T Consensus 71 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 71 DDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 688888888 999999887665433333578999999999999998654
No 44
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.72 E-value=1.7e-16 Score=123.32 Aligned_cols=120 Identities=21% Similarity=0.295 Sum_probs=82.9
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v 230 (291)
|.+|+|+.|.|+|++++.+||+++|||++......+++.....++...+. ...+.+.. ..+++++|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEec-------CCCCceeEEEEEc
Confidence 56799999999999999999999999998654332222223334432221 23344322 1245889999999
Q ss_pred cC---hHHHHHHHHHHHHhhCCe--eeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 231 DD---VYKSAEVVNLVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
+| +++++++| +++|+. +..+|+++...+.+++|++|||||.|||++...
T Consensus 72 ~~~~~v~~~~~~L----~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLL----AAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHH----HHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 87 55566666 999986 334555544445678999999999999997543
No 45
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.71 E-value=1.1e-16 Score=119.45 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=84.9
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce-e---e--ccCceeeEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-E---Y--TKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~--~~~~g~~hi 226 (291)
++.|+.|.|+|++++++||+++|||+.......++......++..+ ...++|....+.. + + ..+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999986543322323445555533 2456665432211 1 0 114578899
Q ss_pred EEEecChHHHHHHHHHHHHhhCCeeeec-ccccCCCCceEEEE--ECCCCCeEEEEe
Q 022831 227 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGPIPGLNTKITSF--VDPDGWKTVLVD 280 (291)
Q Consensus 227 a~~v~di~~~~~~l~~~~~~~G~~~~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 280 (291)
+|.|+|++++++++ +++|+++..+ |...++ +.+..|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999 9999998875 443333 4456666 799999999985
No 46
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=1.7e-16 Score=117.77 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=84.2
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcc-cceeeeeeccCCCCcceEEEEeEecCc--e-eeccCceeeEEE
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-LKCALAMLGYAEEDQTTVLELAYSYGV--T-EYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-~~~~~~g~~hia 227 (291)
.+++|+.|.|+|++++.+||+++|||+.......++ ..+.+ .+..++ ...+++...... . ..+.+.|++|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999875432222 12222 222111 234454332211 1 112345889999
Q ss_pred EEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
|.|+|++++++++ ++.|+++...|.... .+.+++|++||+|+.|||+|
T Consensus 78 ~~v~d~~~~~~~l----~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHL----KAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHH----HHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 9999999999999 999999877654333 34578999999999999986
No 47
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.71 E-value=2e-16 Score=122.05 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCc---ccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEE
Q 022831 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP---ELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 226 (291)
.+.+|.|+.|.|+|++++++||+++|||++....... ++...+.++..++. +..+.+... ..+.+++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcC------CCCceeEEE
Confidence 3567999999999999999999999999976542221 11234455543322 233444321 124689999
Q ss_pred EEEecChHH---HHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 227 AISTDDVYK---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 227 a~~v~di~~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
+|.|+|+++ ++++| +++|+++..+|.+++..+.+.+|++||+|+.|||+......
T Consensus 78 af~V~d~~~l~~~~~~L----~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~~ 135 (154)
T cd07237 78 MLEVTSLDDVGRAYDRV----RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRTV 135 (154)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceEc
Confidence 999987654 67777 99999998888877765678899999999999998765443
No 48
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.71 E-value=6.7e-16 Score=120.56 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=87.2
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~ 98 (291)
|.|.+|+|+.|.|+|++++++||+++|||++........+.....|+..... ...+.+..... ....++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecCCC----CCCCCceEEEE
Confidence 6789999999999999999999999999998765433322223455554322 22233322111 11236789999
Q ss_pred EECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 99 ATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.|+| +++++++|.++|+++...|.....+...++|++||+|+.|||+...
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9986 5578899999999986565554433333588999999999999873
No 49
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.70 E-value=4.2e-16 Score=113.97 Aligned_cols=114 Identities=25% Similarity=0.238 Sum_probs=83.5
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecCh
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di 233 (291)
+.|++|.|+|++++++||+++||++...... ....+ .++..++ ...+.+....... ...++..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865542 12223 3333222 1223333222111 1234668999999999
Q ss_pred HHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
+++++++ +++|+++..+|...++ +++.++++|||||.|+|+|
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999 9999999999887764 4688999999999999985
No 50
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.70 E-value=1e-16 Score=119.38 Aligned_cols=120 Identities=26% Similarity=0.393 Sum_probs=83.7
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEecc--CCCceeeEEeeccCCCcceEEEeeecCCCCcccC---CCCceEEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDV--PEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDI---GTGFGHLA 97 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---g~~~~~i~ 97 (291)
||+||+|.|+|++++.+||+++|||++...... ........++..+ ...+.+............. +.+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG--EGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST--SSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc--ccceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999987662 2223334444433 3333343333222211111 01345566
Q ss_pred EEE---CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 98 IAT---EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
+.+ +|+++++++|+++|+++..++.....+...+.|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 655 56888999999999999988877777767666799999999996
No 51
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.70 E-value=8.3e-16 Score=118.59 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=87.5
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccC---CCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP---EEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~ 95 (291)
..-++|+||.|.|+|++++++||+++|||++....... .......++..+.. ...+.+.... .+.++.|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~------~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEGP------GPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcCC------CCceeEE
Confidence 34578999999999999999999999999986643321 11234555654322 2223332211 1347899
Q ss_pred EEEEECCHH---HHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 96 LAIATEDVY---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 96 i~~~v~d~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
++|.|+|++ +++++|+++|+++...+...+.+....+|++||+|+.|||....
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 999998755 68999999999988776655544445689999999999998765
No 52
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.70 E-value=4.2e-16 Score=116.33 Aligned_cols=119 Identities=29% Similarity=0.490 Sum_probs=84.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCC-Cc---c--cCCCCceEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TS---Y--DIGTGFGHL 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~---~--~~g~~~~~i 96 (291)
+|+|+.|.|+|++++++||+++|||++......++.+...+++..+ . ..+++...... .. + ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~--~--~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG--N--TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC--C--EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 5899999999999999999999999987543333334445555543 2 23555442111 11 1 124577899
Q ss_pred EEEECCHHHHHHHHHHcCCeeeeC-CccCCCCceEEEEE--ECCCCcEEEEEe
Q 022831 97 AIATEDVYKMVENIRAKGGNVTRE-PGPLKGMTTHFAFV--KDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~dP~G~~iel~~ 146 (291)
||.|+|+++++++|.++|+++..+ |....+|.+ ..|+ +||||+.||+++
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKP-VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCE-EEEecccccCcEEEEecC
Confidence 999999999999999999998764 455445544 3566 799999999975
No 53
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=1.3e-15 Score=114.38 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=82.2
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCce-eeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY-SNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~ 98 (291)
|+.+|+|+.|.|+|++++++||+++|||++..+........ ...++..+ . ..+.+...... ...+..|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~--~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG--G--LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC--C--eEEEEecCCCC----CCCCceEEEE
Confidence 57899999999999999999999999998866532211000 01122222 1 23444422111 1236789999
Q ss_pred EEC--CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 99 ATE--DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.|+ |+++++++|.++|+++..+ .+...+....+||+||+|+.|||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 998 7999999999999987643 233333344689999999999998653
No 54
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=1.1e-15 Score=113.42 Aligned_cols=118 Identities=29% Similarity=0.478 Sum_probs=84.4
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCC---CCcccCCCCceEEE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG---VTSYDIGTGFGHLA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~~~~~~g~~~~~i~ 97 (291)
|++|+|+.|.|+|++++++||+++|||+........ . ..++..+. ..+.+..... ......+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 578999999999999999999999999987643211 1 33344332 2344443222 12223445789999
Q ss_pred EEECC-HHHHHHHHHHcCCeeeeCCccCCC--CceEEEEEECCCCcEEEEEe
Q 022831 98 IATED-VYKMVENIRAKGGNVTREPGPLKG--MTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d-~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dP~G~~iel~~ 146 (291)
|.+++ +++++++|.++|+++...+....+ +....++++||+|+.||+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998766654322 22345889999999999975
No 55
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=1.3e-15 Score=112.76 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=82.4
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~ 98 (291)
|.+.+|+|+.|.|+|++++.+||+++|||++..+.. ...++..........+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 678999999999999999999999999999876532 134554322212333444322 1247889999
Q ss_pred EEC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 99 ATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.|+ |++++++++.++|+++...+.....+ ..+|++||+|+.+|+....
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGHG--KAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCCc--ceEEEECCCCCEEEEEEec
Confidence 997 58899999999999864322222222 3478999999999998643
No 56
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=7.1e-16 Score=114.62 Aligned_cols=113 Identities=13% Similarity=0.196 Sum_probs=82.3
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~ 99 (291)
++.+|.||+|.|+|++++.+||+++|||++..+.. ...|+..+.. ...+.+.... ++..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEE
Confidence 57899999999999999999999999999865321 1456655332 2234343211 256789999
Q ss_pred ECC---HHHHHHHHHHcCCeeeeCCccCC--CCceEEEEEECCCCcEEEEEecC
Q 022831 100 TED---VYKMVENIRAKGGNVTREPGPLK--GMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d---~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
|+| +++++++|.++|+++...+.... .+...+++|+|||||.||++...
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 99999999999998765443211 22234578999999999998654
No 57
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1e-15 Score=113.03 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=80.4
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeee----cCCCCcccCCCCceEEE
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTY----NYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~g~~~~~i~ 97 (291)
+++.|+.|.|+|++++.+||+++|||++..... . ...+. . . +.+.+.. .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~--~-~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE--G-G--FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe--c-c--ceeccchhhhccCCcccccccCCceEEE
Confidence 478999999999999999999999999864321 1 11111 0 1 1111100 00011112233557999
Q ss_pred EEECCHHHHHHHHHHcCC-eeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 98 IATEDVYKMVENIRAKGG-NVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
|.|+|+++++++|+++|+ ++..+|...++|.+. ++++|||||.|+|.+.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 999999999999999986 677788888887664 8999999999999874
No 58
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.69 E-value=1.8e-15 Score=116.82 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=83.0
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc-ccCCCCceEEEEEEC
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATE 101 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~g~~~~~i~~~v~ 101 (291)
+|+||+|.|+|++++++||+++|||++..+.. + ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999976543 1 123333221 2345566655422211 222346889999999
Q ss_pred C---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 102 D---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
| +++++++|.+.|+.+.. +... +....+||+||+|+.||++...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999998543 2222 2234589999999999999875
No 59
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.69 E-value=1.8e-15 Score=110.61 Aligned_cols=114 Identities=24% Similarity=0.263 Sum_probs=82.1
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCH
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDV 103 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~ 103 (291)
+.|++|.|+|++++++||+++||+++..... ... ...++..++ ...+.+....... ..+....+++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 5799999999999999999999999875432 112 234444332 1122222221111 1233567899999999
Q ss_pred HHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 104 YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
++++++|.++|+++..+|...+++. ..++++||+|+.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVG-RFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcE-EEEEEECCCCCEEEeEC
Confidence 9999999999999888877766444 45889999999999975
No 60
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.69 E-value=9.5e-16 Score=115.02 Aligned_cols=114 Identities=21% Similarity=0.348 Sum_probs=80.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECC-
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED- 102 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d- 102 (291)
|+||.|.|+|++++++||+++|||++...... ..++..+ + ..+.+......+......+..|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~~------~~~~~~~--~--~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGEK------TAYFTIG--G--TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCCc------cceEeeC--c--eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 68999999999999999999999998653211 2344443 2 23444332221111223467899999974
Q ss_pred -HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 103 -VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+++++++|.++|+++..++....++.+ .+||+||+|+.||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 999999999999997655444434434 489999999999998765
No 61
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.68 E-value=9.1e-16 Score=116.38 Aligned_cols=116 Identities=24% Similarity=0.297 Sum_probs=84.6
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++||+++..+.. ...++..+ ...+.+...........+.++.|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 358999999999999999999999999865421 12233322 23444433221111112346789999998
Q ss_pred --ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 232 --DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
|++++++++ +++|+++..+|...+. +.+.+||+|||||+|||.+..
T Consensus 73 ~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 899999999 9999998877766654 468899999999999998743
No 62
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=2.9e-15 Score=112.43 Aligned_cols=116 Identities=25% Similarity=0.344 Sum_probs=86.0
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHH
Q 022831 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~ 104 (291)
+||.|.|+|++++++||+++||+++......+ +.....++..+. ....+.+..... ..++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~~------~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGPE------RPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCCC------CCCeeEEEEEcCCHH
Confidence 59999999999999999999999987654433 333456666543 223344433211 347889999999874
Q ss_pred ---HHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC
Q 022831 105 ---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~ 149 (291)
+++++|.++|+++...+...+.+...+++++||+|+.|||++...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 788999999999887766555444455789999999999997654
No 63
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.68 E-value=6.6e-16 Score=117.69 Aligned_cols=117 Identities=19% Similarity=0.345 Sum_probs=86.1
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v 230 (291)
+.++.|+.|.|+|++++++||+++|||++..... + ...++..+.. ...+.+... ..+++.|++|.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC--cceEEEccC-------CCCceEEEEEEC
Confidence 3468999999999999999999999999764421 1 1234443322 234454321 135789999999
Q ss_pred cChHHHH---HHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 231 DDVYKSA---EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 231 ~di~~~~---~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
+|++++. +++ +++|+++..+|........+++||+||+||.|||++.....
T Consensus 68 ~d~~~l~~~~~~l----~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~~ 121 (144)
T cd07239 68 PSIDEVMRGIGRM----IDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQV 121 (144)
T ss_pred CCHHHHHHHHHHH----HHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceEE
Confidence 9988876 566 99999998877654443457789999999999999976554
No 64
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.68 E-value=1.3e-15 Score=112.61 Aligned_cols=116 Identities=23% Similarity=0.249 Sum_probs=81.9
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~ 99 (291)
+++++.|+.|.|+|++++++||+++|||++..... . ..++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D--RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C--eEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 47899999999999999999999999999865421 1 33443211122223333221 12367899999
Q ss_pred E---CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 100 T---EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
| +|+++++++++++|+++...|.....+....+|+.||+|+.||++...
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 9 479999999999999986553333333334589999999999998653
No 65
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.68 E-value=3.1e-16 Score=116.70 Aligned_cols=120 Identities=25% Similarity=0.265 Sum_probs=80.3
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeecc--CcccceeeeeeccCCCCcceEEEEeEecCceeecc---CceeeEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTID--SPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTK---GNAYAQVA 227 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~g~~hia 227 (291)
+|+|+++.|+|++++.+||+++|||+...... .........++..+. ....+............. ..+.+|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 47999999999999999999999999988765 122333445555332 233333332221111000 01234555
Q ss_pred EEe---cChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEE
Q 022831 228 IST---DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 ~~v---~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 278 (291)
+.+ +|+++++++| ++.|+++..+|.+.......++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 4666777777 9999999999987776555556899999999997
No 66
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.67 E-value=3.1e-15 Score=116.29 Aligned_cols=118 Identities=24% Similarity=0.334 Sum_probs=80.3
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
++|+||+|.|+|++++++||+++|||++......+.+.....++..... ...+.+... .++++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEecC-------CCCceeEEEEEcC
Confidence 5799999999999999999999999998754433233223344443221 222333221 2347889999998
Q ss_pred C---HHHHHHHHHHcCCee--eeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 102 D---VYKMVENIRAKGGNV--TREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
| +++++++|+++|+.. ...|.....+...++|++||+|+.||++...
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 778889999999863 2233332222234588999999999998644
No 67
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=3e-15 Score=109.95 Aligned_cols=117 Identities=23% Similarity=0.295 Sum_probs=82.8
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc--ccCCCCceEEEEEECCH
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHLAIATEDV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~g~~~~~i~~~v~d~ 103 (291)
||.|.|+|++++.+||+++|||++..+....+ ......+.... .....+.+........ ...+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPG-SPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCC-CCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654222 22233333211 1134455543332211 12334677999999999
Q ss_pred HHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 104 YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
++++++|.++|+++..++....++ ..++++||+|+.|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999998877444443 35789999999999974
No 68
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=1.1e-15 Score=112.27 Aligned_cols=117 Identities=23% Similarity=0.323 Sum_probs=84.3
Q ss_pred eeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee--eccCceeeEEEEEecCh
Q 022831 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDDV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hia~~v~di 233 (291)
|+.|.|+|++++.+||+++|||++.......+ ......+..++. ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999887643222 233344442221 134455543222211 12245788999999999
Q ss_pred HHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
+++++++ +++|+++..+|...+ .++.+|++||+||+|||++
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999 999999998874433 3688999999999999975
No 69
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.67 E-value=2.1e-15 Score=113.17 Aligned_cols=118 Identities=25% Similarity=0.298 Sum_probs=86.9
Q ss_pred eeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChH
Q 022831 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~ 234 (291)
+|+.|.|+|++++++||+++||++.......+ +.....++..++. +..+.+.... ..+++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 58999999999999999999999987654322 2223445554322 2345543311 1468899999999875
Q ss_pred ---HHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 235 ---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
++++++ ++.|+++..+|...+.++.++++|+||+|++|||++..+..
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 121 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYRI 121 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCccc
Confidence 566777 99999998888766654567889999999999999876554
No 70
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=1.8e-15 Score=116.89 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=83.3
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee-eccCceeeEEEEEec
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hia~~v~ 231 (291)
.++|+.|.|+|++++.+||+++|||++..... + ...+...+. ..+..|.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 37899999999999999999999999876542 1 222322211 1245677655322211 122357899999999
Q ss_pred C---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
| ++++++++ +++|+++. .+.... ..+.+||+|||||.|||++..
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~-~~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVS-GIVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCcc-cccccc--cEEEEEEECCCCcEEEEEECC
Confidence 8 88888999 99999864 333333 357899999999999999965
No 71
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.67 E-value=1.7e-15 Score=118.20 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=83.7
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.+|+|+.|.|+|++++++||+++|||++........+.....++..... ...+.+..... ...++++|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRDPA----GARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecCCC----CCCCCceEEEEECC
Confidence 4689999999999999999999999998765433222222334443221 23344322111 12346899999998
Q ss_pred ChH---HHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 232 DVY---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
|.+ ++++++ ++.|+++..+|..+......++|++|||||+|||+..
T Consensus 79 ~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 755 556667 9999998877776554344568999999999999987
No 72
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.67 E-value=3e-15 Score=114.09 Aligned_cols=114 Identities=19% Similarity=0.392 Sum_probs=83.4
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
.+|+|+.|.|+|++++++||+++|||++..... . ...++..+... ..+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~--~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDH--HSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCc--ceEEEccC-------CCCceEEEEEECC
Confidence 479999999999999999999999999865422 1 24566554322 23333321 1237889999999
Q ss_pred CHHHHH---HHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC
Q 022831 102 DVYKMV---ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~ 149 (291)
|++++. ++|.++|+++...+.....+...++||+||+|+.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 977775 899999999876654443333445889999999999998753
No 73
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=4e-15 Score=110.56 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=80.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeee---c---CCC--CcccCCCCceE
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTY---N---YGV--TSYDIGTGFGH 95 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~---~---~~~--~~~~~g~~~~~ 95 (291)
+.|+.|.|+|++++.+||+++|||++..... .+.+ ..+..+ ...+.+.... . ... .......+..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 5799999999999999999999999865322 1111 112211 1121111110 0 000 11111224468
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 96 LAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
++|.|+|++++++++.++|+++..++...++|.+ .++++||+|+.|++.++
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQT-VAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcE-EEEEECCCCCEEEEecC
Confidence 9999999999999999999999888877888765 47899999999999863
No 74
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=2.7e-15 Score=111.80 Aligned_cols=119 Identities=27% Similarity=0.475 Sum_probs=85.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccC-CCceeeEEeeccCCCcceEEEeeecCCC-Cc-----ccCCCCceEE
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP-EEKYSNAFLGFGPEQSYFVVELTYNYGV-TS-----YDIGTGFGHL 96 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~-----~~~g~~~~~i 96 (291)
|+||.|.|+|++++.+||+++|||++....... .+.....++..+ ...+++.++... .. ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 589999999999999999999999997654432 233445566532 344555543221 11 1346788999
Q ss_pred EEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCC--CcEEEEEe
Q 022831 97 AIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPD--GYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~--G~~iel~~ 146 (291)
+|.|+|++++++++.++|+++..++.....+...+.++.+|+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999998877764444444445555555 99999975
No 75
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.66 E-value=1.3e-15 Score=114.33 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=81.5
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecC-
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD- 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~d- 232 (291)
|+||.|.|+|++++++||+++|||++.... +. . .++..+ ...+.+.............++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~--~~--~--~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG--EK--T--AYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC--Cc--c--ceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 689999999999999999999999975431 11 1 122222 244555332221111123478999999974
Q ss_pred -hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 233 -VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
++++++++ +++|+++..+|....+ +.+.+||+|||||+|||.+...
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcH
Confidence 89999999 9999998765544433 4678999999999999998654
No 76
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=7.9e-15 Score=108.99 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=84.4
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCC-CcccCCCCceEEEEEE
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TSYDIGTGFGHLAIAT 100 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~g~~~~~i~~~v 100 (291)
++|+|+.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 579999999999999999999999999986521 145555432 2344555443322 1222344788999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC
Q 022831 101 ED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~ 149 (291)
+| +++++++|.++|+++... ..... ...+|++||+|++||+....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecC
Confidence 74 899999999999987543 22222 235789999999999987654
No 77
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=6.8e-15 Score=108.94 Aligned_cols=115 Identities=23% Similarity=0.264 Sum_probs=83.5
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc----ccCCCCceEEEEEECC
Q 022831 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS----YDIGTGFGHLAIATED 102 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~g~~~~~i~~~v~d 102 (291)
-.|.|+|++++.+||+++|||++......+++......+..+ +..+.+ ........ ...+.+..+++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~--~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG--DGGVMV--GSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC--CEEEEE--ecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999998765333443334445543 222333 22111111 1233456789999999
Q ss_pred HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
++++++++.++|+++..++...++|.+. ++++||+|+.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g~~~-~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYGSRE-FTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCCcEE-EEEECCCCCEEEEec
Confidence 9999999999999999888888887664 789999999999864
No 78
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=2.2e-15 Score=112.31 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=85.7
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCc-ccceeeeeeccCCCCcceEEEEeEecCce-e-----eccCceeeEE
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP-ELKCALAMLGYAEEDQTTVLELAYSYGVT-E-----YTKGNAYAQV 226 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-----~~~~~g~~hi 226 (291)
+.|++|.|+|++++.+||+++|||+........ .......++..+ ...+++....... + ...++|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987654432 223445555532 3556665432211 1 1235788999
Q ss_pred EEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCC--CCeEEEEe
Q 022831 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD--GWKTVLVD 280 (291)
Q Consensus 227 a~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPd--G~~iel~~ 280 (291)
+|.|+|++++++++ .+.|+++..+|......+.++.++.+|+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999999 9999999988764444333444444444 99999985
No 79
>PRK06724 hypothetical protein; Provisional
Probab=99.66 E-value=3.9e-15 Score=110.90 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=77.3
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhc---CCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECF---GMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i 96 (291)
|+.+|+||.|.|+|++++++||+++| |++..... .+ . ... ..+.+...... .....+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~-~--~g~--~~l~l~~~~~~--~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY-S--TGE--SEIYFKEVDEE--IVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee-e--CCC--eeEEEecCCcc--ccCCCCceeE
Confidence 67899999999999999999999966 66653210 11 1 111 11222111110 1123367899
Q ss_pred EEEE---CCHHHHHHHHHHcCCeeeeCCccCC---CCceEEEEEECCCCcEEEEEecC
Q 022831 97 AIAT---EDVYKMVENIRAKGGNVTREPGPLK---GMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 ~~~v---~d~~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
||.| +|+++++++|.++|+++..+|...+ +|. ..++|+||||+.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~-~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGY-YTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCE-EEEEEECCCCCEEEEEeCC
Confidence 9998 6799999999999999877765543 332 4578999999999998763
No 80
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=4.3e-15 Score=110.02 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=82.4
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceee----ccCceeeEEEEEecC
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEY----TKGNAYAQVAISTDD 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~~g~~hia~~v~d 232 (291)
-.|.|+|++++.+||+++||+++......+++......+..+ ...+.+......... ...++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999987765333332222233322 123333322211111 123467899999999
Q ss_pred hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
++++++++ .++|+++..+|...+. +.+.++++|||||+|+|.+
T Consensus 79 ~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 99999999 9999999998887775 4688999999999999975
No 81
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.66 E-value=7.4e-15 Score=107.77 Aligned_cols=112 Identities=24% Similarity=0.418 Sum_probs=84.9
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
++|+|+.|.|+|++++++||+++|||++..... ...++..+. ...+.+.+.... ..+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 579999999999999999999999999986532 145665532 233444443321 236789999997
Q ss_pred ---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 102 ---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
++++++++|.++|+++...+...+++.+ .+++.||+|+.+|++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEcc
Confidence 6889999999999998877654555444 478999999999998653
No 82
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=6.2e-15 Score=109.37 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=80.6
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~ 99 (291)
|..+++|+.|.|+|++++++||+++|||++.... +. ..++..++ ...+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GP--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CC--EEEEEcCC---CcEEEEecCC------CCCCcceEEEE
Confidence 4578999999999999999999999999986521 11 22333222 2334443321 11245789998
Q ss_pred EC--CHHHHHHHHHHcCCeeeeCCccC-------CCCceEEEEEECCCCcEEEEEec
Q 022831 100 TE--DVYKMVENIRAKGGNVTREPGPL-------KGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
|+ |+++++++|.++|+++...|... .+|.+ .++|+||+|+.||+++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGR-GVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCee-EEEEECCCCCEEEEEec
Confidence 86 69999999999999986655443 24444 58999999999999976
No 83
>PRK06724 hypothetical protein; Provisional
Probab=99.66 E-value=2e-15 Score=112.46 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=76.7
Q ss_pred CCceeeeeeeCCchhhHHHHHHhc---CCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEE
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~ 228 (291)
..++||+|.|+|++++.+||+++| |++.........+. ..+.+..... ......|..|+||
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~--------------~~l~l~~~~~--~~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGE--------------SEIYFKEVDE--EIVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCC--------------eeEEEecCCc--cccCCCCceeEEE
Confidence 469999999999999999999966 55543211101111 1122211000 0112347789999
Q ss_pred Ee---cChHHHHHHHHHHHHhhCCeeeecccccC--CCCceEEEEECCCCCeEEEEech
Q 022831 229 ST---DDVYKSAEVVNLVTQELGGKITRQPGPIP--GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 229 ~v---~di~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
.| +|++++++++ +++|+++..+|...+ +.+.+.+||+|||||.|||+..+
T Consensus 70 ~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 70 QAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred ecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 98 6799999999 999999988886544 23447889999999999998764
No 84
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=1.9e-15 Score=112.28 Aligned_cols=113 Identities=17% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.+|.|+.|.|+|++++.+||+++|||++..+.. . ..++..+. .+..+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~--~----~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA--K----ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC--C----eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 468999999999999999999999999765421 1 23344322 2344444321 145679999998
Q ss_pred C---hHHHHHHHHHHHHhhCCeeeecccccC--CCCceEEEEECCCCCeEEEEechhh
Q 022831 232 D---VYKSAEVVNLVTQELGGKITRQPGPIP--GLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
| ++++++++ +++|+++..++.... ..+.+++||+|||||.||++.+...
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~~ 122 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPSH 122 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeeec
Confidence 6 88888888 999999877654211 2235678999999999999986543
No 85
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=1.1e-14 Score=107.58 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=85.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCC--CcccCCCCceEEEEEECCHH
Q 022831 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV--TSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~g~~~~~i~~~v~d~~ 104 (291)
..|.|+|++++.+||+++|||++......+++.+....+..+. . .+.+...... .....+.+..+++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD--S--VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC--E--EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4588999999999999999999987655444444444454432 2 2333322111 11123346679999999999
Q ss_pred HHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 105 KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
++++++.+.|+++..++...++|.+ .++++||+|+.|+|.++
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDR-YGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccce-EEEEECCCCCEEEEecC
Confidence 9999999999999888877777765 48999999999999863
No 86
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.65 E-value=4.6e-15 Score=110.23 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=81.5
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCC-ceeeEEeeccCCCcceEEEeeecCCCCc--ccCCCCceEEEEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-KYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHLAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~g~~~~~i~~~ 99 (291)
+|+||.|.|.|++++++||+++|||++..+....+. .....++..........+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 579999999999999999999999998776543221 1123334322112233455554322211 1222367899999
Q ss_pred EC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEE
Q 022831 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~ 145 (291)
|+ |++++++++.++|+++...+.. ++ ...++++||+|++|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FG-ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cc-eEEEEEECCCCCEEEeC
Confidence 98 4799999999999997654332 33 34578999999999984
No 87
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.65 E-value=4.2e-15 Score=109.81 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=81.1
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
++|.||.|.|+|++++++||+++|||++..+. .. ...++..++ ..+.+.+.... ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRP---ED--GALYLRMDD--RAWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCC---CC--CeEEEEccC--CceEEEEEeCC-------CCceeEEEEEEC
Confidence 47899999999999999999999999886431 11 144555432 23445443321 236779999997
Q ss_pred C---HHHHHHHHHHcCCeeeeCCccC--CCCceEEEEEECCCCcEEEEEecC
Q 022831 102 D---VYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+ +++++++|.++|+++...+... ..+...++|++||||+.||++...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 4 8899999999999987644221 222234589999999999998754
No 88
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.65 E-value=5.1e-15 Score=112.22 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=82.8
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCH-
Q 022831 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDV- 103 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~- 103 (291)
.||.|.|+|++++.+||+++|||++..+... ..+|+..........+.+... ...++.|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 4999999999999999999999998765321 255665432222233322211 234899999999864
Q ss_pred --HHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC
Q 022831 104 --YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 104 --~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~ 149 (291)
++++++|.++|+++...|...+.+...++|++||+|+.||+.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 5679999999999877776655444556899999999999987654
No 89
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.65 E-value=2.6e-15 Score=111.10 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=79.5
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.+|.|+.|.|+|++++.+||+++|||++..+.+ . ..++...+......+.+... ..+++.|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~--~----~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG--Q----SVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC--C----eEEEEeccCCCccEEEEeeC-------CCCceEEEEEEcC
Confidence 568999999999999999999999999876532 1 22333212112344444321 2458899999997
Q ss_pred ---ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 232 ---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
+++++.+++ ++.|+++...+... + .+..+||+|||||.||++...+
T Consensus 72 ~~~~v~~~~~~l----~~~G~~~~~~~~~~-~-~~~~~~~~DPdG~~iEl~~~~~ 120 (121)
T cd09013 72 SPEALERRVAAL----EASGLGIGWIEGDP-G-HGKAYRFRSPDGHPMELYWEVE 120 (121)
T ss_pred CHHHHHHHHHHH----HHcCCccccccCCC-C-CcceEEEECCCCCEEEEEEecc
Confidence 467777777 99999875433322 2 2457899999999999997543
No 90
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=1.3e-14 Score=108.35 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=82.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhc---CCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc---ccCCCCceEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECF---GMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS---YDIGTGFGHL 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~g~~~~~i 96 (291)
+|+||.|.|+|++++.+||+++| ||++..... .+ ..|... .....+.+........ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999876542 11 233322 1224455554332221 1234578899
Q ss_pred EEEECC---HHHHHHHHHHcCCeeeeCCccC--CCCceEEEEEECCCCcEEEEEe
Q 022831 97 AIATED---VYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+|.|+| +++++++|.++|+++...+... ..+....+|++||+|++|||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 999974 8899999999999988776542 1223445889999999999985
No 91
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=3.9e-15 Score=110.36 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=83.8
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCc---eeeccCceeeEEEE
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV---TEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hia~ 228 (291)
.++.|+.|.|+|++++++||+++||++.....+.. .+.. +..++ ..+++...... .....+++..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~--~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKA--LRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceE--EEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 35899999999999999999999999987653221 1222 22221 34454332211 11123468899999
Q ss_pred EecC-hHHHHHHHHHHHHhhCCeeeecccccCC--CCceEEEEECCCCCeEEEEe
Q 022831 229 STDD-VYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~d-i~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 280 (291)
.+++ ++++++++ +++|+++..+|...++ ..++.+||+|||||+||+++
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 99999999 9999999887765432 23578999999999999986
No 92
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.65 E-value=1e-14 Score=106.49 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=79.5
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v 100 (291)
|++|+|+.|.|+|++++++||++ |||++..+.. + ..++..+. .....+.+... ..+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~---~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---D---ELYYRGYG-TDPFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---C---eEEEecCC-CccEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 9999865421 1 34554322 22222222111 124678999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
+|.+++.+.+++.|.+....+. .+++.. +++|+||+|+.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEec
Confidence 9999999999999998765432 344434 58999999999999865
No 93
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=3.5e-15 Score=108.52 Aligned_cols=113 Identities=26% Similarity=0.318 Sum_probs=80.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc-ccCCCCceEEEEEECC
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATED 102 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~g~~~~~i~~~v~d 102 (291)
|+|++|.|+|++++++||+++|||++..+...+ ....++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999986543221 12455554332 2344443322211 1233467899999999
Q ss_pred HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
++++++++.++|+++..++.. .++.+ .+++.||+|+.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998877654 33334 47899999999985
No 94
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.65 E-value=3e-15 Score=110.65 Aligned_cols=114 Identities=25% Similarity=0.208 Sum_probs=80.8
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.++.|+.|.|+|++++++||+++|||++....+ + ..++..........+.+... ..++..|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD--D----RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC--C----eEEEEecCCCceEEEEEeeC-------CCCceeEEEEECC
Confidence 468999999999999999999999999865421 1 12222111112233444221 1357899999994
Q ss_pred ---ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 232 ---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
|++++++++ +++|+++...|.....+..+.+|+.|||||+||++..-
T Consensus 70 ~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 688888888 99999987765443333357899999999999998753
No 95
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=2.6e-15 Score=110.92 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=79.1
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeE----ecCceeeccCceeeEEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAY----SYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~g~~hia~ 228 (291)
++.++.|.|+|++++.+||+++||+++....+ . + ..+ ..+ ..+.+.. .....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~~-~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VTF-EGG-----FALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EEE-ecc-----ceeccchhhhccCCcccccccCCceEEEE
Confidence 46789999999999999999999999764321 1 1 111 100 1111100 000111122345579999
Q ss_pred EecChHHHHHHHHHHHHhhCC-eeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 229 STDDVYKSAEVVNLVTQELGG-KITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~-~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
.|+|++++++++ +++|+ ++..+|...++ +.+.++|+|||||+|||.++
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 99986 78888877775 56899999999999999874
No 96
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=3.7e-15 Score=110.75 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=81.8
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCccc-ceeeeeeccCCCCcceEEEEeEecCcee--eccCceeeEEEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL-KCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hia~~ 229 (291)
.|+|+.|.|.|++++++||+++|||+........+. ....+++..........++|........ .....++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 378999999999999999999999998766433221 1122333322112234566654332211 1123467899999
Q ss_pred ecC---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 230 TDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
|+| ++++++++ +++|+++..++.. .+.+.+||+||+||+|||+
T Consensus 81 v~~~~~~~~~~~~~----~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERL----RAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHH----HHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 984 68888888 9999998764433 2467899999999999985
No 97
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=8.3e-15 Score=109.39 Aligned_cols=117 Identities=25% Similarity=0.277 Sum_probs=84.3
Q ss_pred CceeeeeeeCCchhhHHHHHHhc---CCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee---eccCceeeEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi 226 (291)
+|+|+.+.|+|++++.+||+++| ||++....+. . . .+... ..+..+.+........ ...++++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~---~-~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-G---R-SWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-C---c-eEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 9998765421 1 1 11211 1235566655333211 1234578999
Q ss_pred EEEecC---hHHHHHHHHHHHHhhCCeeeeccccc--CCCCceEEEEECCCCCeEEEEec
Q 022831 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 227 a~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+|.|+| ++++++++ +++|+.+...+... ...+.+.+|++|||||+|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999974 77888888 99999998877652 22356789999999999999864
No 98
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=119.53 Aligned_cols=227 Identities=18% Similarity=0.232 Sum_probs=144.5
Q ss_pred cCCcCCccceeeEEEEeCCH-HHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcc--cCCC
Q 022831 15 EWPKKDKRRLLHAVYRVGDL-DRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSY--DIGT 91 (291)
Q Consensus 15 ~~~~~~~~~i~hv~l~v~d~-~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~g~ 91 (291)
++| +...++++|.+.|.|. ++...++. .|||+...+.-... ...++ .++..++|.-........+ .+|+
T Consensus 15 ~~P-~~~~GfeFvEf~~~d~~~~l~~l~~-~lGF~~~~~Hrsk~----v~l~r--QGdinlvvn~~~~s~a~~f~~~Hgp 86 (363)
T COG3185 15 ANP-EGTDGFEFVEFAVPDPQEALGALLG-QLGFTAVAKHRSKA----VTLYR--QGDINLVVNAEPDSFAAEFLDKHGP 86 (363)
T ss_pred cCC-CCCCceeEEEEecCCHHHHHHHHHH-HhCccccccccccc----eeEEE--eCCEEEEEcCCCcchhhHHHHhcCC
Confidence 444 3489999999999999 55555555 59999876432221 22233 2244443321111111122 4888
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCeeeeC-Cc--cC--C---CCceEEEEEECCCC-cEE---EEEec---C-CC---CC
Q 022831 92 GFGHLAIATEDVYKMVENIRAKGGNVTRE-PG--PL--K---GMTTHFAFVKDPDG-YIF---ELIQR---G-PT---PE 152 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~-~~--~~--~---~g~~~~~~~~dP~G-~~i---el~~~---~-~~---~~ 152 (291)
+.+.++|.|+|...++++.++.|++.... .. +. + +-.+..+|+.|..| ..+ ++... . .. ..
T Consensus 87 s~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~ 166 (363)
T COG3185 87 SACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLT 166 (363)
T ss_pred chheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCce
Confidence 99999999999999999999999954322 21 11 1 11123567766663 111 11111 0 11 13
Q ss_pred CceeeeeeeC--CchhhHHHHHHhcCCeeeeeccCccc--ce-eeeeeccCCCCcceEEEEeEecCcee-------eccC
Q 022831 153 PLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPEL--KC-ALAMLGYAEEDQTTVLELAYSYGVTE-------YTKG 220 (291)
Q Consensus 153 ~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~ 220 (291)
.|+|++++|. .++.+..||+++|||+.....+.++. .. .-.+.+ .+....|.|..+.+..+ ...|
T Consensus 167 ~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S---p~G~vrlplN~s~~~~sqi~efl~~y~G 243 (363)
T COG3185 167 AIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS---PCGKVRLPLNESADDKSQIGEFLREYRG 243 (363)
T ss_pred eechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec---CCCcEEeecccCCCchhHHHHHHHHhCC
Confidence 6999998886 79999999999999998887654432 12 222222 22345566655444432 2247
Q ss_pred ceeeEEEEEecChHHHHHHHHHHHHhhCCeeeeccc
Q 022831 221 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 221 ~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.|++||||.++||.++.+++ ++.|+++...|.
T Consensus 244 ~GIQHIA~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 244 EGIQHIAFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred CcceEEEecccHHHHHHHHH----HHcCCccCCCch
Confidence 79999999999999999999 999999988774
No 99
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=3.7e-15 Score=110.78 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=79.6
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEec--------C--ceeeccCcee
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSY--------G--VTEYTKGNAY 223 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~g~ 223 (291)
+.|+.|.|+|++++.+||+++|||+...... +..+... ..+ ...+.+.... . .......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGEL--ETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEEe--cCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999999764322 1112111 111 1122111100 0 0001112344
Q ss_pred eEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
.|++|.|+|++++++++ +++|+++..+|...++ +.+.++++|||||+|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 68999999999999999 9999999888877765 56788999999999999875
No 100
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.64 E-value=1.3e-14 Score=106.89 Aligned_cols=111 Identities=20% Similarity=0.174 Sum_probs=79.6
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCC-----cccCCCCceEEEEEE
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-----SYDIGTGFGHLAIAT 100 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-----~~~~g~~~~~i~~~v 100 (291)
+..|.|+|++++.+||+++|||++..... . ..++..+. ..+.+.+....... ....+ ...|++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----W--YVSLRSPD--GGVELAFMLPGHETVPAAQYQFQG-QGLILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----c--EEEEecCC--CceEEEEccCCCCCCcchhcccCC-ceEEEEEEE
Confidence 67899999999999999999999876421 1 33343222 22444443321111 11122 234899999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+|++++++++.++|+++..++...++|.+ .++++||+|+.|+|+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWGQR-HFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCcce-EEEEECCCCCEEEEEC
Confidence 99999999999999998877777777655 4789999999999985
No 101
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.63 E-value=5.7e-15 Score=109.07 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=80.4
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecC
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~d 232 (291)
++.|+.|.|+|++++.+||+++|||++..+.. . ...++..++ .+..+.+... ..++..|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 58999999999999999999999999765421 1 123333222 2345555331 13477899999975
Q ss_pred ---hHHHHHHHHHHHHhhCCeeeeccccc--CCCCceEEEEECCCCCeEEEEech
Q 022831 233 ---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 ---i~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+++++++| +++|+++...|.+. ..+..+++||+|||||.||++...
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 77778888 99999998765321 222347899999999999998754
No 102
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.63 E-value=1.9e-14 Score=106.16 Aligned_cols=113 Identities=22% Similarity=0.315 Sum_probs=81.9
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v 100 (291)
+.+|+|+.|.|+|++++++||+++|||++..... . ..++.... .....+.+... ..++..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATG-SEHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCC-CccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999875422 1 34554322 22233333221 123567999999
Q ss_pred ---CCHHHHHHHHHHcCCeeeeCCccC--CCCceEEEEEECCCCcEEEEEecC
Q 022831 101 ---EDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+++++++++|.++|+++..++... +++.+ .++++||+|+.|+|+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 468999999999999987665432 34433 578999999999998754
No 103
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.63 E-value=1.3e-14 Score=107.23 Aligned_cols=116 Identities=21% Similarity=0.225 Sum_probs=83.6
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce--eeccCceeeEEEEEecChH
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT--EYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hia~~v~di~ 234 (291)
..|.|+|++++.+||.++||+........+++......+..+ ...+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 348899999999999999999987765433333333333332 1344554321110 0112456789999999999
Q ss_pred HHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
++++++ .+.|+++..+|...+. +.+.++++||||++|+|.+.
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEecC
Confidence 999999 9999999988876554 57899999999999999874
No 104
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.62 E-value=4.5e-14 Score=106.32 Aligned_cols=120 Identities=23% Similarity=0.387 Sum_probs=82.8
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECC
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d 102 (291)
+|+|+.|.|+|++++++||+++|||++...... . ...++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765331 1 245554431 12334444443222111233478899999987
Q ss_pred HH---HHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC
Q 022831 103 VY---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 103 ~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~ 150 (291)
++ +++++|.+.|+++..... . ++ ...++++||+|+.||+....+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~-~~-~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H-GN-AWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C-Cc-eeEEEEECCCCCEEEEEEcCCC
Confidence 55 578999999998765432 2 22 2357899999999999977643
No 105
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.62 E-value=5.4e-15 Score=107.52 Aligned_cols=113 Identities=25% Similarity=0.179 Sum_probs=81.2
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee-eccCceeeEEEEEecC
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hia~~v~d 232 (291)
|+|+.|.|+|++++.+||+++||+........+. ...++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 6899999999999999999999999765433221 1223332221 2445543322211 1224577899999999
Q ss_pred hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEE
Q 022831 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 278 (291)
++++++++ +++|+++..++.+ ..+.+.++++||+|+.|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 99999999 9999999887765 2346789999999999996
No 106
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=8.8e-15 Score=108.57 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=80.3
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec-
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD- 231 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~- 231 (291)
++.|+.|.|+|++++.+||+++||++..... +.+....++ + ...+.+.... ...+..|++|.|+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~~------~~~~~~h~a~~v~~ 68 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQPD------GEIPPQHYAFLVSE 68 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecCC------CCCCcceEEEEeCH
Confidence 5799999999999999999999999976532 112122222 1 2345543321 1235689999886
Q ss_pred -ChHHHHHHHHHHHHhhCCeeeeccccc------CCCCceEEEEECCCCCeEEEEec
Q 022831 232 -DVYKSAEVVNLVTQELGGKITRQPGPI------PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 -di~~~~~~l~~~~~~~G~~~~~~p~~~------~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
|++++++++ ++.|+++...|... ...+.+.+||+|||||.|||+++
T Consensus 69 ~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 69 EEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 689999999 99999987766543 12357899999999999999987
No 107
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.3e-14 Score=107.81 Aligned_cols=117 Identities=23% Similarity=0.300 Sum_probs=83.5
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce-eeccCceeeEEEEEec
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-EYTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~g~~hia~~v~ 231 (291)
+|+|+.|.|+|++++.+||+++|||++....+ ...++..++ ....|.+....... ......+..|++|.|+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 47899999999999999999999999876521 123344322 23556664433221 1223457899999997
Q ss_pred C---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhh
Q 022831 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
+ ++++++++ +++|+++.. +...+. .+.+|++|||||+|||....|.
T Consensus 74 ~~~~v~~~~~~l----~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 74 SRADLAAALRRL----IELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CHHHHHHHHHHH----HHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecCc
Confidence 4 78888888 999998754 333333 4678999999999999987664
No 108
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=1.3e-14 Score=108.92 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccc-eeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v 230 (291)
..++|+.|.|+|++++++||+++||+++..+....... ....++..+ ...+.+..... ...++++|++|.|
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~----~~~~~~~Hiaf~v 74 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDS----LQERTYNHIAFKI 74 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCC----CCCCCceEEEEEc
Confidence 35899999999999999999999999875543211000 000111111 24555543211 1134689999999
Q ss_pred c--ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 231 D--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~--di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+ |++++++++ +++|+++..+. ......++.+||+|||||.|||...
T Consensus 75 ~~~~ld~~~~~l----~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 75 SDSDVDEYTERI----KALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred CHHHHHHHHHHH----HHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecC
Confidence 8 688888889 99999875433 2232246899999999999999964
No 109
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.62 E-value=1.7e-14 Score=104.31 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=75.7
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHHHHH
Q 022831 29 YRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVE 108 (291)
Q Consensus 29 l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~~~~ 108 (291)
|.|+|++++++||+++|||++...... ...+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPD------YVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETS------EEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCC------eEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 689999999999999999999874321 333333211000112222211 122234477899999999999999
Q ss_pred HHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEE
Q 022831 109 NIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~ 145 (291)
++.++|+++..+|...++|.+ .+++.||+|+.|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999999888888777755 488999999999985
No 110
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.61 E-value=2.1e-14 Score=108.16 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=83.4
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecC
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~d 232 (291)
+|.|+.|.|+|++++++||+++|||+.....+. . ...++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999997765321 1 233433221 12345555443221111224578999999998
Q ss_pred hHH---HHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 233 VYK---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 233 i~~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
+++ +++++ .++|+++...+. .+ +.+.+|++||+||+|||+...+..
T Consensus 76 ~~~v~~~~~~l----~~~G~~~~~~~~-~~--~~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 76 LDDLRDLYERL----RAAGITPVWPVD-HG--NAWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred HHHHHHHHHHH----HHCCCCccccCC-CC--ceeEEEEECCCCCEEEEEEcCCCC
Confidence 664 56677 899998876543 22 257889999999999999876654
No 111
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.61 E-value=2.5e-14 Score=122.83 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=84.6
Q ss_pred CcCCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCce-eeEEeeccCCCcceEEEeeecCCCCcccCCCC-ce
Q 022831 17 PKKDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY-SNAFLGFGPEQSYFVVELTYNYGVTSYDIGTG-FG 94 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~-~~ 94 (291)
..+.+++|+||+|.|+|++++++||+++|||++......+++.. ...|+..+.. . ..+.+... .+.+ +.
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-------~~~g~~~ 209 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-A-HDIAFVGD-------PEPGKLH 209 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-C-cccceecC-------CCCCceE
Confidence 33568899999999999999999999999999876544333322 2345543221 1 11211111 1234 88
Q ss_pred EEEEEECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 95 HLAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 95 ~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
|+||.|+| +++++++|.++|+++...|.....+...++||+||+|+.||+..
T Consensus 210 Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 210 HVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99999986 55578899999999877666544333446899999999999983
No 112
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.61 E-value=4.8e-14 Score=102.70 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=79.1
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHH
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~ 105 (291)
+..|.|+|++++++||+++|||++... .+ ...++..++ .....+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 357889999999999999999998642 11 123333222 2234444432211 12245699999999999
Q ss_pred HHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 106 MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
++++|+++|+++..++....+|.+. +++.||+|+.|+++++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWGVRR-FFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCceEE-EEEECCCCCEEEEEEc
Confidence 9999999999988877776776554 7899999999999975
No 113
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=2.2e-14 Score=105.61 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=78.9
Q ss_pred eeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce----eeccCceeeEEEEEec
Q 022831 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT----EYTKGNAYAQVAISTD 231 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~g~~hia~~v~ 231 (291)
+..|.|+|++++.+||+++|||+.....+ .+. .+..++. ...+.+....... ......+..|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WYV--SLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cEE--EEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 56799999999999999999999775421 122 2221111 2444443321110 0111223358999999
Q ss_pred ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
|++++++++ .++|+++..+|...+. +.+.++++|||||.|||+|
T Consensus 76 did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 999999999 9999999888876664 5688999999999999986
No 114
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.60 E-value=2.5e-14 Score=104.20 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=78.8
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHH
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~ 236 (291)
..|.|+|++++.+||+++|||+..... + . ..++..++ ..+..+.+..... .++...|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~---~--~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH---G--W-IATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC---C--c-eEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 468899999999999999999975321 1 1 22222211 1234455433211 123457999999999999
Q ss_pred HHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 237 AEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
++++ ++.|+++..+|...++ +.+.+|+.||+||.|||+++
T Consensus 72 ~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 9999 9999999888876664 45789999999999999975
No 115
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.60 E-value=2.5e-14 Score=104.91 Aligned_cols=111 Identities=24% Similarity=0.332 Sum_probs=82.4
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec-
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD- 231 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~- 231 (291)
++.|+.|.|+|++++.+||+++|||++....+ ...++..+. ..+..+.+... ...+..|++|.|+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 58999999999999999999999999876532 122333221 12344444331 1347899999998
Q ss_pred --ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 232 --DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+++++.+++ +++|+++...|...++ +++.+|++||+||+||++...
T Consensus 68 ~~~v~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 68 EEDLEALAAHL----EAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHH----HHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEcc
Confidence 577777777 9999999887764554 467899999999999999764
No 116
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.60 E-value=3.1e-14 Score=105.26 Aligned_cols=109 Identities=25% Similarity=0.424 Sum_probs=77.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEE--
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT-- 100 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v-- 100 (291)
+|+|+.|.|+|++++++||+++|||++..... . ..++..+ ...+.+.+.... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~--~~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG--DLWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC--CEEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999865432 1 2344432 222233221111 1234678999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+|+++++++|.++|+++..++.. .+ ..+||.||+|+.|||....
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~--~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG--DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc--cEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 22 3588999999999998654
No 117
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.59 E-value=1.5e-14 Score=104.54 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=75.5
Q ss_pred eeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHHHH
Q 022831 159 LRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAE 238 (291)
Q Consensus 159 l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~~~ 238 (291)
|.|+|++++++||+++|||++....+ .+..+..+... ......+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRF--HDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEE--EEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccch--hhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999887322 12222222100 011122222111 11224578999999999999999
Q ss_pred HHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 239 VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 239 ~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
++ +++|+++..+|...++ +.+.++++|||||+|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 9999999999888666 468999999999999986
No 118
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=3.6e-14 Score=103.47 Aligned_cols=109 Identities=22% Similarity=0.401 Sum_probs=75.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC--CH
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE--DV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~--d~ 103 (291)
||.|.|+|++++++||+++|||++..+.+. ..++..+ + ..+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~------~~~~~~~--~--~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK------EAYFELA--G--LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc------eeEEEec--C--eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 899999999999999999999998654321 2344432 1 233333221111 12346789999994 79
Q ss_pred HHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 104 YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
+++++++.++|+++........++. ..+|++||+|+.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEG-RSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCc-eEEEEECCCCCEEEEEeC
Confidence 9999999999999764433322233 358999999999999854
No 119
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.59 E-value=2.7e-14 Score=105.31 Aligned_cols=113 Identities=26% Similarity=0.317 Sum_probs=80.7
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.+|.|+.|.|+|++++++||+++|||+...... .+ .++..++ .....+.+.. ...++.+|++|.++
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 368999999999999999999999999764422 12 2333222 1233444422 11346789999994
Q ss_pred ---ChHHHHHHHHHHHHhhCCeeeeccccc-CCCCceEEEEECCCCCeEEEEech
Q 022831 232 ---DVYKSAEVVNLVTQELGGKITRQPGPI-PGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~~-~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+++++++++ +++|+++..+|... ...+.+.++++||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 678888888 99999998876432 222467889999999999998754
No 120
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.58 E-value=5.1e-14 Score=104.18 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=76.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecC-----CCCcccCCCCceEEEE
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY-----GVTSYDIGTGFGHLAI 98 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~g~~~~~i~~ 98 (291)
++||+|.|+|++++++||+. |||++...... ...+.+..+. +. .+.+.... .......+.+..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~-~~--~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG-GV--RLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC-CE--EEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999999999975 99998543221 1123333321 22 22222110 0011112234567888
Q ss_pred EEC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEE
Q 022831 99 ATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~ 145 (291)
.+. |+++++++|+++|+++..+|...++|.+ .++++||+||.|+|+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQR-YAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCE-EEEEECCCCCEEEEe
Confidence 775 8999999999999998888877777765 478999999999986
No 121
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=7.5e-14 Score=103.45 Aligned_cols=114 Identities=23% Similarity=0.251 Sum_probs=77.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHh---cCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEE
Q 022831 24 LLHAVYRVGDLDRTIKYYTEC---FGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v 100 (291)
|+|++|.|+|++++++||+++ |||+...+. .+ . .+.+.... ....+.+......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~--~~~~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G--AVGYGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c--eeEeccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 589999999999999999998 699886543 11 1 22233221 2233444433221111 122457999999
Q ss_pred CC---HHHHHHHHHHcCCeeeeCCccCCC--CceEEEEEECCCCcEEEEE
Q 022831 101 ED---VYKMVENIRAKGGNVTREPGPLKG--MTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dP~G~~iel~ 145 (291)
+| ++++++++.++|+++..+|...++ .....+|++||+|+.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 788999999999998877765553 2233578999999999986
No 122
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.58 E-value=1.1e-13 Score=100.66 Aligned_cols=109 Identities=26% Similarity=0.362 Sum_probs=78.5
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHHHH
Q 022831 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMV 107 (291)
Q Consensus 28 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~~~ 107 (291)
.|.|+|++++++||+++|||++..... .. ...++..+ + ..+.+......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--G--AQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--C--EEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999876543 11 23444432 2 33444433222111 2345668999999999999
Q ss_pred HHHHHcCCe-eeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 108 ENIRAKGGN-VTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 108 ~~l~~~G~~-~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+++.++|++ +..++...++|.+ .++++||+|+.|+++|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 999999998 5666666666644 4789999999999975
No 123
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.58 E-value=3.5e-14 Score=103.65 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=77.6
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.++.|+.|.|+|++++++||++ |||++..+.+ + . .++..++. ....+.+.. + ..+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~---~-~~~~~~~~-~~~~~~~~~--~-----~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D---E-LYYRGYGT-DPFVYVARK--G-----EKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C---e-EEEecCCC-ccEEEEccc--C-----CcCcccEEEEEEC
Confidence 3589999999999999999999 9999765521 1 1 23332211 222222211 0 1357889999999
Q ss_pred ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
|.+++.+.+ ++.|..+...+. .++ +++++||+|||||.|||+..
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 999998888 889998765443 333 46789999999999999864
No 124
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=3.9e-14 Score=104.70 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=78.7
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce------eeccCceeeEEE
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT------EYTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~g~~hia 227 (291)
|.++.|.|+|++++++||+++|||++..+ +++.+ .++..++. ..+.+....... +.....+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 56899999999999999999999998764 12222 23333222 223333221110 111234788999
Q ss_pred EEe--cChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 228 IST--DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 228 ~~v--~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
|.+ +|++++++++ .++|+++...+. .. .+++.+|++||||++||++++
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~~-~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-WP-RGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-CC-CCeeEEEEECCCCCEEEEecC
Confidence 998 4799999999 999999876554 22 346789999999999999864
No 125
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.58 E-value=7.7e-14 Score=119.30 Aligned_cols=121 Identities=25% Similarity=0.365 Sum_probs=85.4
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~ 98 (291)
..+++|+||+|.|+|++++++||+++|||++......+.+.....++..... ...+.+... .+++++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTNG-------NGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeecC-------CCCceeeEEE
Confidence 4679999999999999999999999999998765443333333444433221 112332211 2358899999
Q ss_pred EECC---HHHHHHHHHHcCCe--eeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 99 ATED---VYKMVENIRAKGGN--VTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|++ +...|.....+...++|++||+|+.||++...
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9998 55668999999987 55455443333344689999999999998754
No 126
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.58 E-value=5.3e-14 Score=102.31 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=79.2
Q ss_pred eeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHHH
Q 022831 158 MLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~~ 237 (291)
.|.|+|++++.+||+++|||+...... +. ...++..+ ...+.+....+.... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 588999999999999999999876542 11 22333322 245555443322111 2346679999999999999
Q ss_pred HHHHHHHHhhCCe-eeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 238 EVVNLVTQELGGK-ITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 238 ~~l~~~~~~~G~~-~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
+++ +++|++ +..++...++ +.+.++++||+|+.|||+|
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999 999999 5666665554 4588999999999999986
No 127
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=3.1e-14 Score=103.82 Aligned_cols=109 Identities=24% Similarity=0.356 Sum_probs=75.6
Q ss_pred eeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec--Ch
Q 022831 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD--DV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~--di 233 (291)
|+.|.|+|++++.+||+++|||+...+.+. . .++..+ ...+.+....... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~--~----~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK--E----AYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc--e----eEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 789999999999999999999998654321 1 112211 2344443322111 12346789999994 68
Q ss_pred HHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+++++++ .++|+++...+..... +++.+|++|||||+|||+..
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 8888888 9999998654332222 35789999999999999863
No 128
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=5.5e-14 Score=102.71 Aligned_cols=109 Identities=28% Similarity=0.286 Sum_probs=77.6
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee-eccCceeeEEEEEecC---
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDD--- 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hia~~v~d--- 232 (291)
+.|.|+|++++++||+++||+++.... + .+..+... + ...+.+........ .....+.+|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~--~--~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS--P--TFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC--C--ceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 678999999999999999999976532 1 23322222 1 23455544332211 1123467899999986
Q ss_pred hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
++++++++ .++|+++..+|...+. ++.++|+|||||.||++.
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCC--ccEEEEECCCCCEEEeeC
Confidence 77777888 9999999988877665 467899999999999973
No 129
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=6.1e-14 Score=103.95 Aligned_cols=114 Identities=23% Similarity=0.217 Sum_probs=77.3
Q ss_pred ceeeeeeeCCchhhHHHHHHh---cCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe
Q 022831 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v 230 (291)
+.|+.|.|+|++++++||+++ ||++..... .+ ..+.+.. +. ....+.+....+..+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~--~~~~~~~-~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP--GAVGYGK-GG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC--ceeEecc-CC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999999 588876442 11 1222222 11 1244445433221111 123457999999
Q ss_pred cC---hHHHHHHHHHHHHhhCCeeeecccccCC--CCceEEEEECCCCCeEEEE
Q 022831 231 DD---VYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~ 279 (291)
+| ++++.+++ .++|+.+..+|...+. .+.+.+||+|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAA----LAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHH----HHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 66677777 9999998888766553 2345689999999999997
No 130
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.3e-13 Score=101.91 Aligned_cols=113 Identities=27% Similarity=0.409 Sum_probs=78.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCC------cccCCCCceEEE
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT------SYDIGTGFGHLA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~g~~~~~i~ 97 (291)
|.|+.|.|+|++++++||+++|||++..+ +++. ..++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 56899999999999999999999998764 1222 345554432 223333221111 111234678999
Q ss_pred EEE--CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 98 IAT--EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v--~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
|.+ +|++++++++.++|+++...+. ..++.. .++++||+|+.||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~-~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGR-SLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCee-EEEEECCCCCEEEEec
Confidence 999 5799999999999998765543 233434 4889999999999985
No 131
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.2e-14 Score=106.62 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=75.1
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee-----ecc----Ccee
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-----YTK----GNAY 223 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-----~~~----~~g~ 223 (291)
++.+..|.+++.-+...||...||++..+..+.+......+... ....++|..+++... +.. +.|.
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~-----~~~~~ELthn~Gtes~~~~~~~ngN~~prGf 116 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFS-----RNAKLELTHNWGTESPPDQAYLNGNKEPRGF 116 (170)
T ss_pred hhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEec-----ccCceeeecCCCCCCCcchhhcCCCCCCCcc
Confidence 34455555555555555555555555444333222111111111 135677877776642 111 2389
Q ss_pred eEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 224 ~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+||+|.|+|+++++.++ ++.|+++...|...-. ..++|+.||||++|||....
T Consensus 117 gHIci~V~di~sac~~l----kekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 117 GHICIEVDDINSACERL----KEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred ceEEEEeCCHHHHHHHH----HHhCceeeecCCCccc--cceeEEECCCCCeEEEeecC
Confidence 99999999999999999 9999997776543221 35799999999999998653
No 132
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.8e-14 Score=112.77 Aligned_cols=128 Identities=37% Similarity=0.634 Sum_probs=108.4
Q ss_pred CCCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcc-----------cceeeeeeccCCCCcceEEEEeEecCceeec
Q 022831 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYT 218 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 218 (291)
...+.-|+++.|.|.+++++||+++|||++.+..+.++ +++.-.|+++++++.|+.+||+.+++...|.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 34678999999999999999999999999988765554 5677788999999999999999999999999
Q ss_pred cCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhhhhhhc
Q 022831 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 219 ~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~ 290 (291)
.|+++.|+.+.++|+-+.++.+ ..-|.+ +++...+++.||||+.|+|+++.|...++|+
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~ 152 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQ 152 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEE
Confidence 9999999999998888887777 544432 2235578899999999999998888877764
No 133
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=1.2e-13 Score=101.89 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=77.7
Q ss_pred eeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecC--
Q 022831 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD-- 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~d-- 232 (291)
.|+.|.|+|++++.+||+++||++.....+ + +..+... . ....+.+...... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~--~~~~~~~--~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D--YAKFLLE--D--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C--eeEEEec--C--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 589999999999999999999998755421 1 2222222 1 1233333321111 12588999999988
Q ss_pred -hHHHHHHHHHHHHhhCCeeeecccccC-CCCceEEEEECCCCCeEEEEech
Q 022831 233 -VYKSAEVVNLVTQELGGKITRQPGPIP-GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
++++++++ .++|+++..+|.... +...+.+|++||+||.|||+.+.
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 67777777 999999887765432 22356799999999999999853
No 134
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.56 E-value=9.2e-14 Score=100.76 Aligned_cols=120 Identities=27% Similarity=0.335 Sum_probs=89.0
Q ss_pred CCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe
Q 022831 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v 230 (291)
+..+.|..|.+.|++++.+||.++|||......+..+..|...... .......+. ... ....+++.+++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~--~~~~gG~l~--~~~---~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPAD--GAGAGGGLM--ARP---GSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECC--Cccccceec--cCC---cCCCCCCCEEEEEec
Confidence 5678999999999999999999999999877644333333333222 211112221 111 112235668899999
Q ss_pred cChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+|+++..+++ .++|++++.++...|+ .++++.+.||.||+|-|.+..
T Consensus 80 ~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999 9999999999998886 479999999999999998754
No 135
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.56 E-value=1.5e-13 Score=99.04 Aligned_cols=112 Identities=31% Similarity=0.413 Sum_probs=82.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHH
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~ 105 (291)
|+.|.|+|++++.+||+++|||++...... ......++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999999876532 12234555433 244555554332222345578899999999999
Q ss_pred HHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 106 MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
++++|.++|+.+...+....++. ..+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGG-RVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCc-EEEEEECCCCcEEeC
Confidence 99999999999877664233333 358899999999985
No 136
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.56 E-value=1.7e-13 Score=99.84 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=73.3
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEE--EEE
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL--AIA 99 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i--~~~ 99 (291)
++|+||.|.|+|++++++||+ +|||++..+. + . ..+...+ .....+.+.... +.+..++ .+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~--~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-G--LELRTAG--NDHRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-c--eEEEecC--CCceEEEeecCC-------CCceeeEEEEeE
Confidence 479999999999999999997 6999986542 1 1 2222222 122333333221 1234444 455
Q ss_pred ECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 100 TEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
++|+++++++|.++|+++...+ ..++.+ .+||.||+||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 5899999999999999987654 333333 378999999999998654
No 137
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.56 E-value=7.5e-14 Score=103.22 Aligned_cols=109 Identities=29% Similarity=0.342 Sum_probs=77.1
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEe--
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST-- 230 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v-- 230 (291)
++.|+.|.|+|++++.+||+++|||++....+ +. .++..+ ...+.+...... +..++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~----~~~~~~----~~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--KG----AYLEAG----DLWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--Cc----eEEecC----CEEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 47899999999999999999999999765432 11 122222 122333221111 1245778999988
Q ss_pred cChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEech
Q 022831 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 282 (291)
+|++++++++ +++|+++..++.. + ++.+||+|||||.|||+...
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCC
Confidence 5788889999 9999998665432 2 46899999999999999743
No 138
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.55 E-value=4.2e-13 Score=97.35 Aligned_cols=121 Identities=22% Similarity=0.268 Sum_probs=87.5
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccC-CCcceEEEeeecCCCCcccCCCCceEEE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGP-EQSYFVVELTYNYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~g~~~~~i~ 97 (291)
++...+.|..|.|+|++++++||+++|||+.....+.. ......+..+. ..... +. .......+.+...+.
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~--~~~y~~f~~~~~~~gG~-l~-----~~~~~~p~~~~~~iy 76 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMG--EMRYAVFPADGAGAGGG-LM-----ARPGSPPGGGGWVIY 76 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCC--CceEEEEECCCccccce-ec-----cCCcCCCCCCCEEEE
Confidence 45667899999999999999999999999997654332 22333333222 11111 11 111122223556789
Q ss_pred EEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 98 IATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
|.|+|+++..+|.+++|.+++.++.+.+++.+ ++.+.||+||+|.|++..
T Consensus 77 ~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~-~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 77 FAVDDIDATLERVVAAGGKVLRPKTEFPGGGR-IAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred EecCChHHHHHHHHhcCCeEEecccccCCceE-EEEEECCCCCEEEEeecC
Confidence 99999999999999999999999999986545 488999999999998653
No 139
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.5e-14 Score=103.68 Aligned_cols=124 Identities=34% Similarity=0.531 Sum_probs=84.3
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeecc--------CC-------CcceEEEeeecCCCC
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFG--------PE-------QSYFVVELTYNYGVT 85 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~--------~~-------~~~~~l~l~~~~~~~ 85 (291)
-..+.|..+.+.|+.++..||++++|+.+..+...++..+...+++.. .+ .....+++.++.+..
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 355689999999999999999999998887654433322222222210 00 112235666654422
Q ss_pred -----ccc----CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCce-EEEEEECCCCcEEEEEec
Q 022831 86 -----SYD----IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTT-HFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 -----~~~----~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~~dP~G~~iel~~~ 147 (291)
.+. .+.|++||||.|+|+++++++|++.|++....+ .+|.. ..+|+.||||++|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~---~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKL---KDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecC---CCccccceeEEECCCCCeEEEeec
Confidence 121 335999999999999999999999999965433 34433 579999999999999754
No 140
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=8.8e-14 Score=103.28 Aligned_cols=113 Identities=24% Similarity=0.251 Sum_probs=76.2
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCc-----eee--ccCceeeEE
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-----TEY--TKGNAYAQV 226 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~~~--~~~~g~~hi 226 (291)
+.++.|.|+|++++.+||++ |||+.......+. ...+..+ + ...+.+...... ... +...+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36789999999999999976 8999764332222 1111122 1 234444332110 000 123456799
Q ss_pred EEEec---ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 227 AISTD---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 227 a~~v~---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
+|.|+ |++++++++ +++|+++..+|...++ .+.+||+|||||+|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99998 577888888 9999999888776654 567899999999999984
No 141
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.2e-13 Score=102.50 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=76.4
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCC------Ccc-cCCCCceEE
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV------TSY-DIGTGFGHL 96 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~-~~g~~~~~i 96 (291)
+.+++|.|+|++++++||+. |||++......+. ..++..++ ...+.+...... ... ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36899999999999999987 9999864322211 22333221 233444332110 000 122345689
Q ss_pred EEEEC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 97 AIATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+|.|+ |+++++++++++|+++..+|...+++ + .+|++|||||.||++.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~-~-~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGFM-Y-GRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCce-E-EEEEECCCCCEEEEEE
Confidence 99998 58899999999999998877666653 3 4789999999999974
No 142
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.54 E-value=2.9e-13 Score=99.81 Aligned_cols=112 Identities=27% Similarity=0.446 Sum_probs=77.4
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECC--
Q 022831 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED-- 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d-- 102 (291)
.|+.|.|+|++++.+||+++|||+...... + + ..|. ... ..+.+.+...... ...+..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---~-~-~~~~-~~~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD---D-Y-AKFL-LED--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC---C-e-eEEE-ecC--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998865421 1 1 2222 222 2333333322111 11477899999987
Q ss_pred -HHHHHHHHHHcCCeeeeCCccCCC-CceEEEEEECCCCcEEEEEecC
Q 022831 103 -VYKMVENIRAKGGNVTREPGPLKG-MTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+++++++|.++|+++...+....+ +....+|++||+|+.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 788999999999998765543321 2223588999999999999753
No 143
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.54 E-value=1.3e-13 Score=101.71 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=75.6
Q ss_pred eeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHH
Q 022831 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~ 235 (291)
...|.|+|++++++||++ |||+.....+. . ...+..+ ...+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 356899999999999999 99998755321 1 2233322 245555443211 112234689999999999
Q ss_pred HHHHHHHHHHhhCCeee-------ecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 236 SAEVVNLVTQELGGKIT-------RQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+++++ +++|+++. .+|...++ +.+.++|+|||||+|||.|+
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 99999 99999753 23333333 57889999999999999985
No 144
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.54 E-value=1.7e-13 Score=101.65 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=72.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCC----CCc-ccCCCCceEE--EE
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG----VTS-YDIGTGFGHL--AI 98 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~----~~~-~~~g~~~~~i--~~ 98 (291)
||.|.|+|++++++||+++|||++..... . ...+..+ +..+.+.+..... ... .....+..|+ ++
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999864321 1 1222221 2233333322110 000 0111234565 45
Q ss_pred EECCHHHHHHHHHHcCCeeeeCCccCCC---CceEEEEEECCCCcEEEEEe
Q 022831 99 ATEDVYKMVENIRAKGGNVTREPGPLKG---MTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~dP~G~~iel~~ 146 (291)
.++|+++++++|+++|+++..+|..... +....+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6689999999999999998866654221 22345889999999999864
No 145
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.54 E-value=1.9e-13 Score=101.15 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=74.7
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCc-----eeeccCceeeEEEE
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-----TEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~~~~~~~g~~hia~ 228 (291)
++|++|.|+|++++++||++ |||++....... .+ ..+..++ ...+.+...... ...+.+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~--~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE--PH--VEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC--Cc--EEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999965 999875432111 11 1111111 122322211100 00012335568888
Q ss_pred Eec---ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 229 STD---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
.+. |++++++++ +++|+++..+|...+. +.+.++|+|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 765 799999999 9999999888876665 468899999999999997
No 146
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.54 E-value=3.1e-13 Score=99.72 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=75.1
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHH
Q 022831 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~ 105 (291)
...|.|+|++++++||++ |||++..+... ...++..+ + ..+.+....... ......+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~--~--~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG--D--LELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC--C--EEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 467899999999999999 99998754321 13344432 2 244444332111 11233578999999999
Q ss_pred HHHHHHHcCCeee-------eCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 106 MVENIRAKGGNVT-------REPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
++++|.++|+++. .++...++|.+ .++++||+|+.|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMR-EFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCcee-EEEEECCCCCEEEeecC
Confidence 9999999999742 33444456655 48899999999999874
No 147
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.54 E-value=2.6e-13 Score=115.56 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=83.7
Q ss_pred CccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEecc--CCC-ceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEE
Q 022831 20 DKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDV--PEE-KYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i 96 (291)
.+.+|+||.|.|+|++++.+||+++|||++...... +++ .+...++..++.. ..+.+... ....+++|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~--~~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERH--HSLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCc--ceEEEecC------CCCCceEEE
Confidence 468999999999999999999999999998654322 111 1134556543322 22332211 123478999
Q ss_pred EEEECCHHH---HHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 97 AIATEDVYK---MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
+|.|+|+++ ++++|+++|+ ....+.....+...++|++||+|++||+...
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 999998776 7999999999 4445555444445568899999999999863
No 148
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.53 E-value=2.2e-13 Score=99.29 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=73.2
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeE--EEEEe
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQ--VAIST 230 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~h--ia~~v 230 (291)
+|.|+.|.|+|++++++||. .|||++.... + ...+...+. .+..+.+.... ..++.| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~---~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D---GLELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C---ceEEEecCC--CceEEEeecCC-------CCceeeEEEEeEh
Confidence 58999999999999999997 6999986542 1 122222111 23444443211 223444 55566
Q ss_pred cChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+|++++++++ +++|+++..++. +. +.+.+||+||+||.|||...
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~--~~-~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPP--GA-DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCC--cC-CCCEEEEECCCCCEEEEecC
Confidence 8999999999 999999877652 22 24578999999999999864
No 149
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=4e-13 Score=98.15 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=77.5
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc-ccCCCCceEEEEEECC---
Q 022831 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATED--- 102 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~g~~~~~i~~~v~d--- 102 (291)
+.|.|+|++++++||+++|||++.... .. ...+..+. + ..+.+........ .....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~--~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PT--FALFVLGS-G--VKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cc--eEEEEeCC-C--cEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 679999999999999999999986531 11 23333321 2 2344443322211 1123467899999976
Q ss_pred HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEE
Q 022831 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~ 145 (291)
++++++++.++|+++..+|...++|. .++|+||+||.|+++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88899999999999988887777764 378999999999986
No 150
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.52 E-value=1.9e-13 Score=98.60 Aligned_cols=112 Identities=29% Similarity=0.384 Sum_probs=82.7
Q ss_pred eeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHH
Q 022831 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~ 235 (291)
|+.+.|+|++++.+||.++||++......... ....++..+ ...+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78999999999999999999999877653211 233444432 355666554332211234678999999999999
Q ss_pred HHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEE
Q 022831 236 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 278 (291)
+.+++ .++|+.+..++.. ...+.+.+++.||+|+.|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 99999 9999998877652 23346889999999999986
No 151
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.52 E-value=1.6e-13 Score=99.41 Aligned_cols=95 Identities=25% Similarity=0.308 Sum_probs=76.3
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc--ccCCCCceEEEEEECC
Q 022831 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHLAIATED 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~g~~~~~i~~~v~d 102 (291)
+||+|.|+|++++.+||+++||++.......+....+..++..+. ....++|.++..... ...+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~--~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD--GPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT--ETEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC--CcEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 699999999999999999999999887666666666777776543 226788887655442 2377799999999999
Q ss_pred HHHHHHHHHHcCCeeeeCC
Q 022831 103 VYKMVENIRAKGGNVTREP 121 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~ 121 (291)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999977653
No 152
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.52 E-value=1.5e-13 Score=102.02 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=73.4
Q ss_pred eeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce----ee-ccCceeeEEE--E
Q 022831 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT----EY-TKGNAYAQVA--I 228 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~-~~~~g~~hia--~ 228 (291)
|+.|.|+|++++++||+++||+++..... .+ ..+... .....+.+....... .. ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999754321 11 112211 112223322211000 00 0112456765 5
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccC---CCCceEEEEECCCCCeEEEEe
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIP---GLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~---~~~~~~~~~~DPdG~~iel~~ 280 (291)
.++|+++++++| +++|+++..+|.... ..+.+.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 668999999999 999999988775421 123578999999999999975
No 153
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=7.7e-13 Score=96.55 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=71.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHHHH
Q 022831 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKM 106 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~~~ 106 (291)
..|.|+|++++++||++ |||++..+.. . ..++..+ +.. +.+...... . ..+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~--~~~l~~~--~~~--l~l~~~~~~-~---~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----N--LAYFRLG--NCA--FYLQDYYVK-D---WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----C--EEEEEcC--CEE--EEeecCCCc-c---cccCCEEEEEECCHHHH
Confidence 46889999999999988 9999976531 1 4555543 222 223221111 1 11335789999999999
Q ss_pred HHHHHHcCCeee-----eCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 107 VENIRAKGGNVT-----REPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 107 ~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+++|+++|+++. .++...++|.+ .++++|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r-~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGR-EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcE-EEEEECCCccEEEeeC
Confidence 999999998742 23344456655 4889999999999864
No 154
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.47 E-value=7.3e-13 Score=96.67 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=71.6
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChHHH
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~~~ 236 (291)
..|.|+|++++.+||++ |||++....+ .+ .++..+ ...+.+....... ..+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~--~~l~~~----~~~l~l~~~~~~~----~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----NL--AYFRLG----NCAFYLQDYYVKD----WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----CE--EEEEcC----CEEEEeecCCCcc----cccCCEEEEEECCHHHH
Confidence 45789999999999987 9999876531 12 333322 2333343211111 12335789999999999
Q ss_pred HHHHHHHHHhhCCeee-----ecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 237 AEVVNLVTQELGGKIT-----RQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~-----~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
++++ +++|+++. .+|...+ .+.+.++|+|||||+|+|.+
T Consensus 70 ~~~l----~~~G~~~~~~~~~~~~~~~~-~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHI----KALGLPKKFPGVKLPPITQP-WWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHH----HHcCCcccccceecCccccC-CCcEEEEEECCCccEEEeeC
Confidence 9999 99998743 2333333 35789999999999999864
No 155
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=1.6e-12 Score=95.74 Aligned_cols=111 Identities=25% Similarity=0.247 Sum_probs=75.2
Q ss_pred eeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCc------eeeccCceeeEEEEEe
Q 022831 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV------TEYTKGNAYAQVAIST 230 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~~~~~g~~hia~~v 230 (291)
|.|.|+|++++.+||+++|||++.... +..+ .++..+ ...+.+...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999976551 1112 233322 244555432110 0111222334566655
Q ss_pred ---cChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 231 ---DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ---~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+|++++++++ .+.|+++..+|...++ +++.++++||+||+||+..+
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~~ 121 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAHN 121 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEeeC
Confidence 5788888888 9999999888776654 47889999999999999753
No 156
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.44 E-value=6.6e-13 Score=96.23 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=74.3
Q ss_pred eeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee--eccCceeeEEEEEecC
Q 022831 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hia~~v~d 232 (291)
+||.+.|+|++++++||.++||+........+.......++..++. ...|||..+.+..+ ...+.|++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999997766555555566666664432 26889887655432 2367899999999999
Q ss_pred hHHHHHHHHHHHHhhCCeeeecc
Q 022831 233 VYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p 255 (291)
++++.+++ +++|+++...+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 99999987764
No 157
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.44 E-value=2.5e-12 Score=94.76 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=74.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCC------CCcccCCCCceEEEEEE
Q 022831 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG------VTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 27 v~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~------~~~~~~g~~~~~i~~~v 100 (291)
|.|.|+|++++.+||+++|||++..+. .. ...++..+ . ..+.+..... ......+.+..+++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLG--G--LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcC--C--eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 789999999999999999999986541 11 13444432 2 2344332111 11111222334566655
Q ss_pred ---CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 101 ---EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+|++++++++.+.|+++..++...++|.. .++++||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGY-SGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCce-EEEEECCCCCEEEEee
Confidence 67999999999999999877776666644 4889999999999975
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.32 E-value=2.1e-11 Score=97.22 Aligned_cols=100 Identities=24% Similarity=0.390 Sum_probs=73.8
Q ss_pred ccceeeEEEEeC--CHHHHHHHHHHhcCCEEEEEeccCC--CceeeEEeeccCCCcceEEEeeecCCC--Cc-------c
Q 022831 21 KRRLLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPE--EKYSNAFLGFGPEQSYFVVELTYNYGV--TS-------Y 87 (291)
Q Consensus 21 ~~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~-------~ 87 (291)
+.+|+||++.|+ |++++.+||+++|||+.......++ .......+..+ ...+.+++..+... .. .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHH
Confidence 367999999999 9999999999999999887654433 23333444432 34556666654331 11 1
Q ss_pred cCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCc
Q 022831 88 DIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24779999999999999999999999999876653
No 159
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.30 E-value=3.2e-11 Score=97.29 Aligned_cols=122 Identities=21% Similarity=0.217 Sum_probs=89.2
Q ss_pred CCCCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce-eeccCceeeEEEE
Q 022831 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-EYTKGNAYAQVAI 228 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~g~~hia~ 228 (291)
.+..+..+.|+|+|++.+..||++++|+++..+.+ ....++.++ ...|.|.+.++.. +.+...|+.|+||
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeee
Confidence 34568889999999999999999999999887643 223334332 2456665533332 2344679999999
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhh
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
.+++..++.+.+ .++.+.|..+. +.+++.. .-.+||.||+||-||++.++|.
T Consensus 78 LlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp~ 129 (265)
T COG2514 78 LLPTREDLARVL-NHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRPR 129 (265)
T ss_pred ecCCHHHHHHHH-HHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCCh
Confidence 999877777776 34488898875 4555655 4579999999999999998664
No 160
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.18 E-value=1.4e-10 Score=92.38 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=73.8
Q ss_pred CCceeeeeeeC--CchhhHHHHHHhcCCeeeeeccCcc--cceeeeeeccCCCCcceEEEEeEecC--cee-------ec
Q 022831 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPE--LKCALAMLGYAEEDQTTVLELAYSYG--VTE-------YT 218 (291)
Q Consensus 152 ~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~-------~~ 218 (291)
.+++|+++.|+ |++++.+||+++|||+.....+.++ .......+..+ .....|+|..+.. ..+ ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 35899999999 9999999999999999877654332 23344444432 2346677765433 111 22
Q ss_pred cCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeeccc
Q 022831 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 219 ~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.|+|++||||.|+|++++++++ ++.|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4789999999999999999999 999999988774
No 161
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.16 E-value=2.8e-10 Score=99.59 Aligned_cols=103 Identities=20% Similarity=0.363 Sum_probs=74.4
Q ss_pred CcCCccceeeEEEEeC--CHHHHHHHHHHhcCCEEEEEeccCC--CceeeEEeeccCCCcceEEEeeecCC---CC----
Q 022831 17 PKKDKRRLLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPE--EKYSNAFLGFGPEQSYFVVELTYNYG---VT---- 85 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~---~~---- 85 (291)
+.+.+.+|+||++.|+ |++++..||+++|||++....+... .......+. .....+.+++..+.. ..
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~--~~~g~~~i~L~ep~~~~~~s~i~~ 229 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMA--SPDGKVKIPLNEPASGKDKSQIEE 229 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEE--CCCCcEEEEEeccCCCCCCCHHHH
Confidence 4467899999999999 9999999999999999976554322 122222222 112345667665321 11
Q ss_pred --cccCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCC
Q 022831 86 --SYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREP 121 (291)
Q Consensus 86 --~~~~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~ 121 (291)
....|.|+.||||.|+|+++++++|+++|+++...|
T Consensus 230 fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 230 FLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 122478999999999999999999999999987655
No 162
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.07 E-value=5.1e-09 Score=77.46 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=83.4
Q ss_pred eeeeC-CchhhHHHHHHhcCCeeeeeccCcc----------cceeeeeeccCCCCcceEEEEeEecCceeecc-CceeeE
Q 022831 158 MLRVG-DLGRSIKFYEKALGMKLLRTIDSPE----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTK-GNAYAQ 225 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~~g~~h 225 (291)
-|..+ |.+++.+||+++||.+...+...++ +.....-+..+ ...|.+....+...... ++.-..
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 35667 9999999999999999888765544 22222333322 23333433333222222 223466
Q ss_pred EEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 226 ia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
|.+.++|+++.++++ .+.|+++..++....+ +.++..++||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a----~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERA----AAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHH----HhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 778888999999999 9999999999998887 6799999999999999988654
No 163
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.06 E-value=9.3e-09 Score=76.64 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=73.5
Q ss_pred EEEe-CCHHHHHHHHHHhcCCEEEEEec----------cCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEE
Q 022831 28 VYRV-GDLDRTIKYYTECFGMELLRKRD----------VPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96 (291)
Q Consensus 28 ~l~v-~d~~~~~~FY~~~lG~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i 96 (291)
-|.+ .|.+++++||+++||+++..... ...+.+....+.++. ..+. +......... .+.+..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g--~~l~--~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG--QRLM--ASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC--EEEE--EEcCCCCCCC-CCCCCEEE
Confidence 4556 89999999999999999987543 122333445555442 2222 2222111111 12234578
Q ss_pred EEEECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 97 AIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 97 ~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
++.|+| +++++++|.+.| ++..++...++|.+. .+++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 999886 778889987665 888788888888664 8899999999987
No 164
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.05 E-value=3.9e-09 Score=78.69 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=70.3
Q ss_pred eeee-CCchhhHHHHHHhcCCeeeeeccCc----------ccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEE
Q 022831 158 MLRV-GDLGRSIKFYEKALGMKLLRTIDSP----------ELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 226 (291)
Q Consensus 158 ~l~v-~D~~~~~~Fy~~~lG~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 226 (291)
-|.+ .|.+++.+||+++||+++....... .+.+....+..+ ...|.+......... ...+..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 3556 8999999999999999987764311 111222223322 123333332211111 12234578
Q ss_pred EEEecC---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 a~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
++.|+| ++++++++ .+.| ++..+|...++ +.++++++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l----~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEAL----SEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHH----hcCC-eEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 999887 55666666 6655 88888887765 578999999999999983
No 165
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.02 E-value=4.4e-09 Score=82.82 Aligned_cols=147 Identities=25% Similarity=0.327 Sum_probs=83.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCc-------c-----cCCC
Q 022831 24 LLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-------Y-----DIGT 91 (291)
Q Consensus 24 i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~-----~~g~ 91 (291)
|+|+.+.|+|++++.++|++.|||++......+..+.....+.++. . +||+....+... + ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 7899999999999999997789999998777766566677776643 2 566665322111 0 1467
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCeeeeCCccCCCCc--eEEEEEECC----CCcEEEEEecC-CC------C---CCce
Q 022831 92 GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMT--THFAFVKDP----DGYIFELIQRG-PT------P---EPLC 155 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~--~~~~~~~dP----~G~~iel~~~~-~~------~---~~~~ 155 (291)
|+..+|+.++|+++..++|.+.|+... .+...+++. ...++..+. .+..-.+++.. +. + .+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 889999999999999999999998621 112112221 123444553 23444555332 22 1 3589
Q ss_pred eeeeeeCCchhhHHHHHHhc
Q 022831 156 QVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~l 175 (291)
++.+.++|.+++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 166
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.98 E-value=7.6e-09 Score=71.99 Aligned_cols=116 Identities=25% Similarity=0.260 Sum_probs=71.7
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCC-c-ccCCC--CceE--E
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT-S-YDIGT--GFGH--L 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-~~~g~--~~~~--i 96 (291)
-+=|+.|.|+|++++++||.++||.+.-.+.+. .+-+.+ .+..+..-+......+ . .-.|. -..| +
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~------wvdfDf--yGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDT------WVDFDF--YGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccce------EEEeee--cccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 457999999999999999999999976322111 111211 1122222222211111 0 01122 2234 5
Q ss_pred EEEECCHHHHHHHHHHcCCeeeeCCccCC---CCceEEEEEECCCCcEEEEEe
Q 022831 97 AIATEDVYKMVENIRAKGGNVTREPGPLK---GMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~dP~G~~iel~~ 146 (291)
.+.++|.-++.+||+++|+....+|.-.- -|.....|+.||.||.+|+-.
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 67788999999999999998776664332 123345789999999999853
No 167
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=4.8e-08 Score=72.30 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=85.2
Q ss_pred EEEeC-CHHHHHHHHHHhcCCEEEEEeccCC----------CceeeEEeeccCCCcceEEEeeecCCCCcccCCC-CceE
Q 022831 28 VYRVG-DLDRTIKYYTECFGMELLRKRDVPE----------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGT-GFGH 95 (291)
Q Consensus 28 ~l~v~-d~~~~~~FY~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~-~~~~ 95 (291)
-|..+ |.+++++||+++||.++......++ +...++-+.++ +.. |.+....+......+. .-..
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~--g~~--im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG--GST--IMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC--CEE--EEEecCCCccCcccCCCeeEE
Confidence 35667 9999999999999999988766665 45555666654 222 2222222211122222 3346
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC
Q 022831 96 LAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~ 149 (291)
|.+.+.|++++.+++.+.|+++..+..+..||.+. ..++||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~-G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRY-GQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcccce-EEEECCCCCEEEEecCcc
Confidence 78888899999999999999999999999998774 789999999999876543
No 168
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.97 E-value=2.8e-08 Score=70.17 Aligned_cols=113 Identities=24% Similarity=0.387 Sum_probs=67.1
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHH
Q 022831 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~ 104 (291)
.+-.|.|.|-+...+||+++|||++...+.. .++++.......++|+-++............+..+.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEna------~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEENA------LAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEETT------EEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeecccc------EEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 4568999999999999999999999886542 6777764445566666655444445555568899999999987
Q ss_pred HHHHHHHHcCCeeeeCCccCCCCceEEEE-EECCCCcEEEEEecC
Q 022831 105 KMVENIRAKGGNVTREPGPLKGMTTHFAF-VKDPDGYIFELIQRG 148 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~-~~dP~G~~iel~~~~ 148 (291)
+ ++.|.++|.++... . .+ ...++| ..+|+|..|.++...
T Consensus 76 E-Ie~LLar~~~~~~l-~--kg-~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 E-IEALLARGAQYDRL-Y--KG-KNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp H-HHHHHHC-S--SEE-E--E--SSSEEEEEE-TT--EEEEE--S
T ss_pred H-HHHHHhccccccee-E--Ec-CCceEEEEECCCCCEEEEEEcC
Confidence 7 46677777663321 1 12 222355 689999999987553
No 169
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.96 E-value=9.2e-09 Score=72.92 Aligned_cols=117 Identities=18% Similarity=0.280 Sum_probs=74.2
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcc-------cCCCCce
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSY-------DIGTGFG 94 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-------~~g~~~~ 94 (291)
++...|+|.|+|++++++||+. |||+.-....... ..++-.+. . +.+.|.....-+.+ .....-.
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~----a~~mi~~~-n--i~vMLL~~~~fq~F~~~~i~dt~~s~ev 73 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED----AACMIISD-N--IFVMLLEEARFQTFTKRQIADTTKSREV 73 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc----ceeEEEec-c--EEEEEeccHHhhhhcccccccccCCceE
Confidence 3557899999999999999988 9999854322211 11121111 2 22222222111111 1122445
Q ss_pred EEEEEECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 95 HLAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 95 ~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
.||+.+.+ ++++.++..++|+++..++.....-++ ..|.||||+.||++.-.
T Consensus 74 li~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg--~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 74 LISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYG--RSFQDPDGHVWEFLWMD 128 (133)
T ss_pred EEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccc--eeeeCCCCCeEEEEEeC
Confidence 68888864 888999999999998777665544322 45899999999998643
No 170
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.96 E-value=3.8e-09 Score=78.47 Aligned_cols=122 Identities=22% Similarity=0.356 Sum_probs=73.1
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCce---eeEEeeccCCCcceEEEe--------eecCCCC-cccC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY---SNAFLGFGPEQSYFVVEL--------TYNYGVT-SYDI 89 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~l--------~~~~~~~-~~~~ 89 (291)
++++||.+.|+|++++++||+++||+++........... ...+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 478999999999999999999999999987654332211 111111100000000000 0000000 0111
Q ss_pred C-CCceEEEEEECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 90 G-TGFGHLAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 90 g-~~~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
+ .+..|+++.+++ ...........|..+..... ..++. .+|++||||+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 246789999998 66667777778888654433 22322 5899999999999863
No 171
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.95 E-value=1e-08 Score=72.64 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=71.9
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEec-------CceeeccCceeeE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSY-------GVTEYTKGNAYAQ 225 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-------~~~~~~~~~g~~h 225 (291)
+...|.|.|.|++++.+||+. |||+......+.. ...++-. + ...+.|.... ..........-..
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~-~---ni~vMLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIIS-D---NIFVMLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEe-c---cEEEEEeccHHhhhhcccccccccCCceEE
Confidence 356789999999999999966 9999877654332 1111110 0 1222222210 0001122345578
Q ss_pred EEEEecC---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 226 VAISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 226 ia~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
++|.+.+ +|+++.+. .+.|++...+|..... -+-.-|.|||||.||++=
T Consensus 75 i~ls~~s~eevd~~v~ka----~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 75 ISLSAGSREEVDELVDKA----LEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EEeccCcHHHHHHHHHHH----HHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEE
Confidence 8998875 77777777 9999998666654332 233558999999999975
No 172
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.94 E-value=8.5e-09 Score=71.75 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=75.6
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeec--cCc--eeeEE--E
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYT--KGN--AYAQV--A 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~--~~~--g~~hi--a 227 (291)
+-|+.+.|+|++++++||.++||.+..+..+. -....+++. ....-+....+..... .+. -.-|+ -
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~---wvdfDfyGH-----Q~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTDT---WVDFDFYGH-----QVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccce---EEEeeeccc-----EEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 67999999999999999999999997654321 112233331 2222332221111000 111 22344 4
Q ss_pred EEecChHHHHHHHHHHHHhhCCeeeeccccc---CCCCceEEEEECCCCCeEEEEechhh
Q 022831 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPI---PGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~---~~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
|.++|-.++.++| ++.|+.+..+|.-. ..+-.+.+++.||+||.+|+-...++
T Consensus 77 l~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~ 132 (138)
T COG3565 77 LPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQ 132 (138)
T ss_pred EEHHHHHHHHHHH----HHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccch
Confidence 6677888888888 99999988888632 22235789999999999998654443
No 173
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.92 E-value=6e-09 Score=77.37 Aligned_cols=121 Identities=23% Similarity=0.257 Sum_probs=73.0
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccc---eeeeeeccCCCCcceEEEE--------eEecCce-eeccC
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK---CALAMLGYAEEDQTTVLEL--------AYSYGVT-EYTKG 220 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l--------~~~~~~~-~~~~~ 220 (291)
++.|+.+.|+|++++.+||+++||++........... ....+.............. ....... .....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5789999999999999999999999988765432211 1112211110000000000 0000000 01111
Q ss_pred -ceeeEEEEEecC---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 221 -NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 221 -~g~~hia~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
.+..|+++.+++ ........ ...|..+...+. ... +..+|++||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 257899999998 55666666 777888766544 222 338999999999999974
No 174
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.88 E-value=1.6e-08 Score=88.36 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=73.5
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCC-----ceeeEEeeccCCCcceEEEeeecCCC----C---c
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-----KYSNAFLGFGPEQSYFVVELTYNYGV----T---S 86 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~----~---~ 86 (291)
..+.+|+||++.|++++.+..||+++|||+.....+.++- +.....+..+ ...+.++|..+... + .
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v~ipLnEP~~~~~~~SqI~e 253 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMVLLPLNEPTFGTKRKSQIQT 253 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcEEEEeccCCCCCCCcChHHH
Confidence 3578999999999999999999999999998765443221 2234444432 33456666654321 1 1
Q ss_pred ---ccCCCCceEEEEEECCHHHHHHHHHHc----CCeeeeCC
Q 022831 87 ---YDIGTGFGHLAIATEDVYKMVENIRAK----GGNVTREP 121 (291)
Q Consensus 87 ---~~~g~~~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 121 (291)
...|.|++||||.|+|+.++.++|+++ |++.+..|
T Consensus 254 FL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 254 YLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 235789999999999999999999999 98877543
No 175
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.73 E-value=5.7e-08 Score=72.26 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCC-Cc--ccCCCCceE
Q 022831 19 KDKRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TS--YDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~--~~~g~~~~~ 95 (291)
+.+.++++|.+.++|.++...+++ .|||+.+.+.... ....+. .+...++|.-. +... .. ..+|++++.
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~r--QG~I~~vln~e-p~s~a~~~~~~HG~sv~a 76 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYR--QGDINFVLNSE-PDSFAAEFAAQHGPSVCA 76 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEE--ETTEEEEEEEE-STSCHHHHHHHHSSEEEE
T ss_pred CCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEE--eCCEEEEEeCC-CcchHHHHHHhcCCEEEE
Confidence 678999999999999888888886 5999998754222 244444 33555555332 1111 11 237889999
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCC
Q 022831 96 LAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~ 150 (291)
|+|+|+|.++++++..++|++...++... +...+.-++.+.|.++.|++....
T Consensus 77 iafrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 77 IAFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 99999999999999999999977654322 234456789999999999988644
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.64 E-value=3e-07 Score=77.78 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=70.7
Q ss_pred cceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEEC
Q 022831 22 RRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~ 101 (291)
-+..||+|.|+|++++++||+.+||+.. .. ++. ...+ + +.-+.+-+.+. .. ......-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~--a~cm--~--dtI~vMllt~~-D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK--LFLL--G--KTSLYLQQTKA-EK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc--cccc--c--CcEEEEEecCC-CC----CCcceEEEEeccC
Confidence 4567999999999999999999988864 22 111 1222 2 21222222222 11 1224456888887
Q ss_pred C---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 102 D---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+ ++++.++..++|++...++.+... . --|.||||+.||++...
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~---rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP-L---RLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC-c---ceeECCCCCEEEEEEEe
Confidence 5 888899999999986555555444 2 34899999999998653
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.60 E-value=3.8e-07 Score=77.13 Aligned_cols=105 Identities=22% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~ 231 (291)
.+..||+|.|.|+++|++||+++|++.. .. ++. .. .++ . .....+....+. ....-..++|.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs--de~---a~-cm~--d---tI~vMllt~~D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD--GDK---LF-LLG--K---TSLYLQQTKAEK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC--CCc---cc-ccc--C---cEEEEEecCCCC----CCcceEEEEeccC
Confidence 4578999999999999999999999885 22 111 11 121 1 122222222211 2335577889888
Q ss_pred C---hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEe
Q 022831 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 280 (291)
+ +|+++++. .++|++...+|..+.. .--|.|||||.||++-
T Consensus 310 Sre~VD~lv~~A----~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRW----EMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHH----HHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 5 67777777 9999977665554443 3458999999999984
No 178
>PRK10148 hypothetical protein; Provisional
Probab=98.46 E-value=5.3e-06 Score=63.11 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=72.0
Q ss_pred eeeeC-CchhhHHHHHHhcCCeeeeecc---Cc-----------------ccceeeeeeccCCCCcceEEEEeEecCcee
Q 022831 158 MLRVG-DLGRSIKFYEKALGMKLLRTID---SP-----------------ELKCALAMLGYAEEDQTTVLELAYSYGVTE 216 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 216 (291)
-|..+ |.+++.+||+++||..+..... .+ ++.+....+..+ ...|.+......
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~-- 79 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPS-- 79 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCC--
Confidence 35554 8999999999999988764431 10 111222223322 122222221111
Q ss_pred eccCceeeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhh
Q 022831 217 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 217 ~~~~~g~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
......-.++.+.++|.+++.+..+. .+.|+++..++...++ +.++..++||.|+.|.|...+..
T Consensus 80 ~~~~~~~~~l~l~~~d~ee~~~~~~a--La~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~~~ 144 (147)
T PRK10148 80 GKAHYSGFTLVLDTQDVEEGKRWFDN--LAANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVKQQ 144 (147)
T ss_pred cCCCCCeEEEEEECCCHHHHHHHHHH--hhCCCEEEecchhcch-hhccEEEECCCCCEEEEEecCCC
Confidence 01111245778888887764333322 3689999999988876 57899999999999999886543
No 179
>PRK10148 hypothetical protein; Provisional
Probab=98.42 E-value=2.8e-05 Score=59.20 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=75.7
Q ss_pred EEEeC-CHHHHHHHHHHhcCCEEEEEec---c-----------------CCCceeeEEeeccCCCcceEEEeeecCCCCc
Q 022831 28 VYRVG-DLDRTIKYYTECFGMELLRKRD---V-----------------PEEKYSNAFLGFGPEQSYFVVELTYNYGVTS 86 (291)
Q Consensus 28 ~l~v~-d~~~~~~FY~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 86 (291)
-|... |.+++.+||+++||.++..... . +++.+.++.+.++. .. +.+..... ..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g--~~--lm~sD~~~-~~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG--SD--IMMSDAIP-SG 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC--EE--EEEECCCC-Cc
Confidence 34444 8999999999999998865421 1 12444455666542 22 22222111 11
Q ss_pred ccCCCCceEEEEEECCHHH---HHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCCCC
Q 022831 87 YDIGTGFGHLAIATEDVYK---MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 87 ~~~g~~~~~i~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~~~ 151 (291)
...+ ...++++.++|.++ +.++| +.|+++..++.+..+|.+ +..++||-|+.|.|...+..|
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~-~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHG-FGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhc-cEEEECCCCCEEEEEecCCCC
Confidence 1111 24577888889776 45555 588999999999899866 488999999999998765443
No 180
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=73.40 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=72.5
Q ss_pred CccceeeEEEEeC--CHHHHHHHHHHhcCCEEEEEeccCCC--ceeeEEeeccCCCcceEEEeeecCCCCc-------cc
Q 022831 20 DKRRLLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPEE--KYSNAFLGFGPEQSYFVVELTYNYGVTS-------YD 88 (291)
Q Consensus 20 ~~~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~ 88 (291)
.+..|+|++..|. .++.+..||+++|||+.....+.++. +...--+. +....+.|.|..+...++ ..
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~--Sp~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMV--SPCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEe--cCCCcEEeecccCCCchhHHHHHHHHh
Confidence 4579999999885 89999999999999999876555432 22222222 223445565544333222 13
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCC
Q 022831 89 IGTGFGHLAIATEDVYKMVENIRAKGGNVTREP 121 (291)
Q Consensus 89 ~g~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~ 121 (291)
.|.|++||+|.++|+-++.++|+++|++....|
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 778999999999999999999999999987654
No 181
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.26 E-value=1.8e-06 Score=71.25 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=86.7
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCeeeeeccCccc--ceeeeeeccCCCCcceEEEEeEecCce--e-----eccCce
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL--KCALAMLGYAEEDQTTVLELAYSYGVT--E-----YTKGNA 222 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~--~-----~~~~~g 222 (291)
.+++||.+.|.|...+++||...|||++....+..-+ ......++.+ ...+.+....+.. . ...|.|
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g----~~vFv~~s~~~p~~~~~G~~l~~Hgdg 91 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG----KIVFVFNSAYNPDNSEYGDHLVKHGDG 91 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC----CEEEEEecCCCCCchhhhhhhhhcccc
Confidence 4699999999999999999999999998765432211 1111222211 1222222211111 0 123567
Q ss_pred eeEEEEEecChHHHHHHHHHHHHhhCCeeeecccccCC--CCceEEEEECCCCCeEEEEechhhhhh
Q 022831 223 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVDNEDFLKE 287 (291)
Q Consensus 223 ~~hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~~~~~~~~~ 287 (291)
+--+||+|+|.+++.+.+ .++|+++..+|..... +..+++.+..+......++++..++++
T Consensus 92 vkdvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 92 VKDVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred hhceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 888999999999999999 9999999998865332 235778888888877778777766554
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.18 E-value=6e-05 Score=53.54 Aligned_cols=114 Identities=26% Similarity=0.335 Sum_probs=60.5
Q ss_pred eeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCce--eeccCceeeEEEEEecC
Q 022831 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT--EYTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hia~~v~d 232 (291)
.+-+|+|+|-+...+||++.|||++...-. .+.+++.... ...+.|-++++.. ...+.--+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~--~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQK--EERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT----EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCC--ceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 456799999999999999999999876521 3455553332 3334443443332 12223378999999998
Q ss_pred hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhh
Q 022831 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 284 (291)
..++- .| .+.|.++.. .. -+.+++.+-..+|.|.+|.|....+.
T Consensus 74 ~~EIe-~L----Lar~~~~~~-l~--kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 74 PKEIE-AL----LARGAQYDR-LY--KGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp HHHHH-HH----HHC-S--SE-EE--E-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred HHHHH-HH----Hhcccccce-eE--EcCCceEEEEECCCCCEEEEEEcCCH
Confidence 44443 34 355554322 11 12234555578999999999886554
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.98 E-value=0.0002 Score=53.38 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=76.3
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee----eccCceeeEEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE----YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hia~ 228 (291)
.+.+|.+.++|.++...++ +.|||+..-+....+ ..++-.+ ...+.+...+.... ...|+|+--++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk~--v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLF-TALGFQPVARHRSKD--VTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCCS--EEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHH-HHhCcceEEecCCcc--eEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 4789999999987777777 569999877653322 3333222 24444433322210 124789999999
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechhhh
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 285 (291)
.|+|..+++++. .+.|.+....|.... ...+.-++-++|.++-|+++.+..
T Consensus 80 rV~Da~~A~~rA----~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~~~ 130 (139)
T PF14696_consen 80 RVDDAAAAYERA----VALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYGDK 130 (139)
T ss_dssp EES-HHHHHHHH----HHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--SSS
T ss_pred EeCCHHHHHHHH----HHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCCCC
Confidence 999999999999 999999888764222 246677999999999999986654
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.76 E-value=0.00011 Score=57.81 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=50.3
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccc--eeeeeeccCCCCcceEEEEeEecCceee------------cc
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK--CALAMLGYAEEDQTTVLELAYSYGVTEY------------TK 219 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~~~~~~------------~~ 219 (291)
|+|+.+.|+|++++.++|.+.+||.+......+..+ -.+++++ ...|||....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~------~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG------DGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S------SSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC------CceEEEEEeCCcccccccccceechhhcC
Confidence 689999999999999999889999988765544322 1233343 237787663222111 13
Q ss_pred CceeeEEEEEecChHHHHHHHHHHHHhhCCe
Q 022831 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGK 250 (291)
Q Consensus 220 ~~g~~hia~~v~di~~~~~~l~~~~~~~G~~ 250 (291)
+.|+.+++|.++|+++..+++ ++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 579999999999999999999 899975
No 185
>PF15067 FAM124: FAM124 family
Probab=96.77 E-value=0.016 Score=46.49 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred cceeeEEEEeC--CHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeecc-CCCcceEEEeeec-CCCCcccCCCCceEEE
Q 022831 22 RRLLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFG-PEQSYFVVELTYN-YGVTSYDIGTGFGHLA 97 (291)
Q Consensus 22 ~~i~hv~l~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~~-~~~~~~~~g~~~~~i~ 97 (291)
..|-.++|.|+ |.+.+.+||+-+|+-+...+..+ ..++.+- ..+..+++.+.+- .+..+ ......-+.
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~------FC~F~lys~~~~~iQlsLK~lp~~~~p--~p~esavLq 198 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKED------FCFFTLYSQPGLDIQLSLKQLPPGMSP--EPTESAVLQ 198 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC------cEEEEEecCCCeEEEEEeccCCCCCCc--ccccceEEE
Confidence 46778899999 99999999999999988654332 3344332 2233344444332 12211 112334578
Q ss_pred EEECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 98 IATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
|.|.|+.+++..|-.-..++ +..+ .-..|||||.|-|
T Consensus 199 F~V~~igqLvpLLPnpc~PI---------S~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPNPCSPI---------SETR-WQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCCCCcccc---------cCCc-ceeeCCCCCEecc
Confidence 99999988765543332222 2222 3479999999854
No 186
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.57 E-value=0.0037 Score=43.49 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=42.3
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEec--
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD-- 231 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~-- 231 (291)
+..+.|+|+| ++++.||.++||-... ..+.+....+++ |.+ +....=++-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G~D----L~~-------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQGPD----LTI-------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---CC----GSS--------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccCCc----ccc-------CCCcEEeeEEEEEEecCc
Confidence 5678899999 8899999998873211 122222211110 000 0001126778999998
Q ss_pred -ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEE
Q 022831 232 -DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 232 -di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 278 (291)
|+.++.+++ ++.+ +.-+. ..++..+.||++..|++
T Consensus 65 ~Dl~~L~~~l----e~~~--~fidK------k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHL----EEQE--FFIDK------KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHT----TTS---EE--T------T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHh----cccc--eEecC------CceEEEEECCcceEEEe
Confidence 577777777 5533 33332 36789999999998876
No 187
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.49 E-value=0.16 Score=36.84 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHhcCCEE-EEEeccCC------CceeeEEeeccCCCcceEEEeeecCCCCcccCCCCceEEEEEECCHH
Q 022831 32 GDLDRTIKYYTECFGMEL-LRKRDVPE------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 32 ~d~~~~~~FY~~~lG~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~~i~~~v~d~~ 104 (291)
.+.+++.+||+++||-.. ......++ +...++.+.++ +.. +...... +.+..++ ...+++.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~--g~~--lm~~D~~--~~~~~~~-~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG--GQK--LMASDGG--PDFPFGN-NISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET--TEE--EEEEEES--TS----T-TEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC--CeE--EEEECCC--CCCCCCC-cEEEEEEcCCHH
Confidence 689999999999999533 33222221 23334445443 222 2222211 2233333 367888888854
Q ss_pred ---HHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEE
Q 022831 105 ---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~ 145 (291)
.+.++|.+-|- ++ . .+..+.|--|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 55677777763 22 3 4578999999999875
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.13 E-value=0.22 Score=36.15 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCchhhHHHHHHhcCCeeeeec-cCcc------cceeeeeeccCCCCcceEEEEeEecCceeeccCceeeEEEEEecChH
Q 022831 162 GDLGRSIKFYEKALGMKLLRTI-DSPE------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hia~~v~di~ 234 (291)
.+.+++.+||.++||-...... ..++ +......+..+ ...|...... .....+++ ..+.+.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 6899999999999994322221 1111 11111222211 1222222222 12222334 56778888744
Q ss_pred HHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEE
Q 022831 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 279 (291)
++.+..++ |.+.|- +. .++..++|..|..|.|+
T Consensus 84 e~~~~f~~-Ls~gG~---------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDK-LSEGGQ---------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHH-HHTTTE---------TC--CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHH-HHcCCC---------cc--ceeEEEEeCCCCEEEeC
Confidence 44333322 155443 22 48899999999999985
No 189
>PF15067 FAM124: FAM124 family
Probab=95.74 E-value=0.098 Score=42.11 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCceeeeeeeC--CchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCcceEEEEeEecCcee-eccCceeeEEEE
Q 022831 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hia~ 228 (291)
..+..+++.|+ |.+.+.+||+-+++-+......+ |-..-+- ... ...|.|.-..-... .+....-.-+.|
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~----FC~F~ly-s~~--~~~iQlsLK~lp~~~~p~p~esavLqF 199 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKED----FCFFTLY-SQP--GLDIQLSLKQLPPGMSPEPTESAVLQF 199 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC----cEEEEEe-cCC--CeEEEEEeccCCCCCCcccccceEEEE
Confidence 45788899998 99999999999999887554321 2222221 111 34444433211110 111224467889
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccc-cCCCCceEEEEECCCCCeEE
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGP-IPGLNTKITSFVDPDGWKTV 277 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~-~~~~~~~~~~~~DPdG~~ie 277 (291)
.|.|+-+++.-| |.. .|.+.+ -+-..|||||.|=
T Consensus 200 ~V~~igqLvpLL--------------Pnpc~PIS~~-rWqT~D~DGNkIL 234 (236)
T PF15067_consen 200 RVEDIGQLVPLL--------------PNPCSPISET-RWQTEDYDGNKIL 234 (236)
T ss_pred EecchhhhcccC--------------CCCcccccCC-cceeeCCCCCEec
Confidence 999988888777 222 222223 3678999999884
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.31 E-value=0.048 Score=38.03 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=39.2
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCCCcceEEEeeecCCCCcc---cCCCCceEEEEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSY---DIGTGFGHLAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~---~~g~~~~~i~~~ 99 (291)
.+..+.|.|+| ++++.||+++||-++ + +.+.+.+..++.-. ..-=++..+-|.
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~------~-----------------~~l~f~ea~G~DL~~~~~~twDLe~Lkf~ 60 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL------P-----------------FFLTFQEAQGPDLTIENNETWDLEMLKFQ 60 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH------T-----------------TTEEEEE---CCGSS-TTSBSSEEEEEEE
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC------C-----------------ceEEEeeccCCccccCCCcEEeeEEEEEE
Confidence 46789999999 889999999886211 0 00111111111100 000145567888
Q ss_pred EC---CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEE
Q 022831 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel 144 (291)
|+ |+.++.++|.++++-+. ....+..+.||.+..+-+
T Consensus 61 V~~~~Dl~~L~~~le~~~~fid--------Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 61 VPKDFDLAALKSHLEEQEFFID--------KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp ES-S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEEE
T ss_pred ecCcccHHHHHHHhcccceEec--------CCceEEEEECCcceEEEe
Confidence 98 58888888888543321 223346689999976543
No 191
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=71.85 E-value=18 Score=26.13 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=41.2
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC---------------eEEEEechhhhhhhh
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW---------------KTVLVDNEDFLKELQ 289 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~---------------~iel~~~~~~~~~~~ 289 (291)
....++..++.+-..+++.|+.+ .+|.+.|....++-..+.|.|+ +|+|..+.+..+.|.
T Consensus 27 d~~~Ld~~~~~Ii~~ak~~g~~v-~GPipLPtK~~~~tvlrSPhg~~kksreqfE~RiHKRlIdI~~~~~~v~~l~ 101 (115)
T PTZ00039 27 NLKSIEKVCADIITGAKEKNLKV-TGPVRMPVKTLRITTRKSPCGEGTNTWDRFEMRIYKRVIDLYSSSDVVTQIT 101 (115)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEe-ECCccCCceeEEEEeeeCCCCCCCchHHHheeeeeeEEEEEeCCHHHHHHHh
Confidence 33457777777766778888876 6778888755566677999986 455666555555443
No 192
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=68.92 E-value=17 Score=24.30 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
+..++.+.+ ++.|+++..-.... .+.+.+...|.||..+|+.=+..
T Consensus 30 ~~~~~~~~l----~~~G~~v~~ve~~~--~g~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREVEFDD--DGCYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHH----HhcCCceEEEEEcC--CCEEEEEEEECCCCEEEEEEcCC
Confidence 678888888 89999665433212 23466888999999999986543
No 193
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=67.04 E-value=14 Score=26.11 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=37.2
Q ss_pred EEEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC
Q 022831 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 225 hia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
.-+|....+|..++.+...++..|+.+ .+|.+.|..-.++-.++.|+|+
T Consensus 10 L~s~d~~~LD~~~~~Ive~akrtg~~v-~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 10 LKSFDHRLLDQVCREIVETAKRTGADV-KGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred EecCCHHHHHHHHHHHHHHHHHhCCee-eCCccCCCceEEEEEEeCCCCC
Confidence 344556678888888877778899986 6778888865666778999986
No 194
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.46 E-value=23 Score=23.15 Aligned_cols=51 Identities=18% Similarity=-0.024 Sum_probs=30.8
Q ss_pred EEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCC-ceEEEEECCCCCeE
Q 022831 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLN-TKITSFVDPDGWKT 276 (291)
Q Consensus 226 ia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~-~~~~~~~DPdG~~i 276 (291)
+-+...|-.-++.++-..+.++|+.+....-...+.. ...||++|.+|+.+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 3344455333333333333999999888765444321 23599999999876
No 195
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=63.98 E-value=27 Score=23.27 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC
Q 022831 102 DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~ 149 (291)
+.+++.+.+.+.|+.+..- ....+|... +...|.+|..+++.-++.
T Consensus 30 ~~~~~~~~l~~~G~~v~~v-e~~~~g~ye-v~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV-EFDDDGCYE-VEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEE-EEcCCCEEE-EEEEECCCCEEEEEEcCC
Confidence 6888999999999965432 222343333 567999999999987654
No 196
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=61.76 E-value=36 Score=24.58 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=51.7
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEecc------CCCceeeEEeeccCCCcceEEEeeecCCCCcccCCCCce
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDV------PEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFG 94 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~~~ 94 (291)
...+.-+-+.|++.+.+.+-.++ -||.+...... .+|+.....-.++..+ +.+.-.+. +-.-..-.
T Consensus 39 t~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~d--iNldYiYA-----Fv~ek~KA 110 (142)
T COG4747 39 TGDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDAD--INLDYIYA-----FVTEKQKA 110 (142)
T ss_pred ccCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcC--cCceeeee-----eeecCceE
Confidence 34567788999999999999988 79988643211 1111000000001100 11110000 00001123
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeee
Q 022831 95 HLAIATEDVYKMVENIRAKGGNVTR 119 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~ 119 (291)
-+.++|+|++++.+.|+++|++..+
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecC
Confidence 4679999999999999999998764
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.78 E-value=21 Score=21.97 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.5
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCee
Q 022831 92 GFGHLAIATEDVYKMVENIRAKGGNV 117 (291)
Q Consensus 92 ~~~~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678899999999999999999875
No 198
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=58.07 E-value=45 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=32.1
Q ss_pred ecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC
Q 022831 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
...++..+..+-..+++.|+.+ .+|.+.|....++-..+.|.|+
T Consensus 12 ~~~Ld~~~~~I~~~ak~~g~~~-~GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 12 VRSLEKVCAQIKRIAEKTGVRM-SGPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE-ECCccCCcceEEEEeeeCCCCC
Confidence 3457777777766668889875 6778888865566678999974
No 199
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.26 E-value=81 Score=23.75 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
+|++..+| ...|.+ .....+++|-.|..|+|+-+
T Consensus 91 ~Drlwnal----~~~g~e-----------~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 91 IDRLWNAL----SDNGGE-----------AEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred HHHHHHHH----hccCcc-----------hhcceeEecccCcEEEEcHH
Confidence 55556666 777752 13568899999999998743
No 200
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.48 E-value=39 Score=21.40 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=20.8
Q ss_pred eeeEEEEEe--cChHHHHHHHHHHHHhhCCeeeec
Q 022831 222 AYAQVAIST--DDVYKSAEVVNLVTQELGGKITRQ 254 (291)
Q Consensus 222 g~~hia~~v--~di~~~~~~l~~~~~~~G~~~~~~ 254 (291)
+...+.|.+ +|.+++.+.| ++.|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 334445554 4777888888 9999998774
No 201
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=47.58 E-value=1.4e+02 Score=23.61 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=42.8
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEE-EEEeccCCCceeeEEeeccC-----CCcceEEEeeecCCCCcccCCCCce
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMEL-LRKRDVPEEKYSNAFLGFGP-----EQSYFVVELTYNYGVTSYDIGTGFG 94 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~l~~~~~~~~~~~g~~~~ 94 (291)
-..++|+.++|++.+.+.++-+..+..-. .+.... ++..+..+.+.. ...--.+||+.+.. +.| .-.|+-
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~I--NGRPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Y-p~eGWE 107 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGELLSENMI--NGRPICLFKLNQPLQFGGWSIDCVELPYPKD-KRY-PQEGWE 107 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEE--TTEEEEEEEEEEEEEETTEEEEEEEEE---S-S---SS-EEE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhcee--CCeeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCC-CCCCce
Confidence 35689999999999999999988775533 332211 222333332211 11112356665543 222 334899
Q ss_pred EEEEEECC-HHHHHHHH
Q 022831 95 HLAIATED-VYKMVENI 110 (291)
Q Consensus 95 ~i~~~v~d-~~~~~~~l 110 (291)
||-|-++. .+...+++
T Consensus 108 HIE~Vip~~~~~~~~~~ 124 (185)
T PF06185_consen 108 HIEFVIPSDAQTLLEQA 124 (185)
T ss_dssp EEEEE--S-GGGHHHHH
T ss_pred EEEEEecCCHHHHHHHH
Confidence 99999963 44444443
No 202
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.64 E-value=83 Score=20.73 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=31.2
Q ss_pred EEEEecChHHHHHHHHHHHHhhCCeeeecccccCCC-CceEEEEECCCCCeEE
Q 022831 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGL-NTKITSFVDPDGWKTV 277 (291)
Q Consensus 226 ia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~ie 277 (291)
+.+...|-..++.++-..+.++|+.+....-...+. -...+|++|.+|..++
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 344455533333333333389999988765544331 1236999999999873
No 203
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.90 E-value=1.3e+02 Score=22.72 Aligned_cols=111 Identities=18% Similarity=0.345 Sum_probs=55.8
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCC-EEEEEecc----C---CCceeeEEeeccCCCcceEEEeeecCCCCcccCCCC
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGM-ELLRKRDV----P---EEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTG 92 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~-~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~g~~ 92 (291)
..+|.-.-..-.+.+++.+||.++|-= ++..-... + .+.+..+.+.++.. . + +.+. ..+...+.....
T Consensus 3 ~~kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~-~-f-~~ld-~g~~~~f~fneA 78 (151)
T COG3865 3 MPKITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQ-S-F-MALD-GGPNTSFKFNEA 78 (151)
T ss_pred CCcceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCe-E-E-EEEc-CCCCcCCCcCcc
Confidence 334333333448999999999998742 22211111 1 22333333443211 1 1 1111 111111222211
Q ss_pred ceEEEEEECC---HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEec
Q 022831 93 FGHLAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 93 ~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~ 147 (291)
..+-+.++| +|.+..+|...|... ....+++|--|.-|+|+.+
T Consensus 79 -~S~~v~~~~q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 79 -FSFQVACDDQEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred -EEEEEEcCCHHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 123344455 666778888887521 2246899999999998754
No 204
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=44.36 E-value=35 Score=24.65 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=46.7
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeC------CccCCCCceEEEE-EECCCCcEEEEEecCCCCCCceeeeeeeCCchhh
Q 022831 95 HLAIATEDVYKMVENIRAKGGNVTRE------PGPLKGMTTHFAF-VKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRS 167 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~------~~~~~~g~~~~~~-~~dP~G~~iel~~~~~~~~~~~hv~l~v~D~~~~ 167 (291)
-+-+-|++-+++++.|.++|+.+... ....|+|..+.+- +.|-+ .-++.+..--....=.-+.++|.|++++
T Consensus 44 IiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~d-iNldYiYAFv~ek~KAlli~r~ed~d~~ 122 (142)
T COG4747 44 IIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDAD-INLDYIYAFVTEKQKALLIVRVEDIDRA 122 (142)
T ss_pred eEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcC-cCceeeeeeeecCceEEEEEEhhHHHHH
Confidence 45678899999999999999985321 1222332211111 12222 1222211111111224466889999999
Q ss_pred HHHHHHhcCCeee
Q 022831 168 IKFYEKALGMKLL 180 (291)
Q Consensus 168 ~~Fy~~~lG~~~~ 180 (291)
.+-+++ .|.+..
T Consensus 123 ~~aLed-~gi~~~ 134 (142)
T COG4747 123 IKALED-AGIKLI 134 (142)
T ss_pred HHHHHH-cCCeec
Confidence 999877 676643
No 205
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=43.56 E-value=1.6e+02 Score=23.24 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=37.0
Q ss_pred CceeeeeeeCCchhhHHHHHHhcCCeeeeeccCcccc-eeeeeeccCCCC---cceEEEEeEecCceeeccCceeeEEEE
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEED---QTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~g~~hia~ 228 (291)
.++|+.++|++.+.+.++-...+..-..-....-+|+ +.++-+..+-.- .-..+||..+.+. .| .-.|+-||-|
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K-~Y-p~eGWEHIE~ 111 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK-RY-PQEGWEHIEF 111 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS----SS-EEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC-CC-CCCCceEEEE
Confidence 4899999999999999988877765533221111221 222112111000 1234566543331 12 2459999999
Q ss_pred EecC
Q 022831 229 STDD 232 (291)
Q Consensus 229 ~v~d 232 (291)
.++.
T Consensus 112 Vip~ 115 (185)
T PF06185_consen 112 VIPS 115 (185)
T ss_dssp E--S
T ss_pred EecC
Confidence 8873
No 206
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=41.97 E-value=60 Score=27.93 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCCceEEEEEE------CCHHHHHHHHHHcCCeee
Q 022831 89 IGTGFGHLAIAT------EDVYKMVENIRAKGGNVT 118 (291)
Q Consensus 89 ~g~~~~~i~~~v------~d~~~~~~~l~~~G~~~~ 118 (291)
.|..++|+.+.| .|++++.+.|.++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 457889999999 999999999999999976
No 207
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=40.76 E-value=17 Score=21.17 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=17.8
Q ss_pred CceeeeeeeCCchhhHHHHHHhcC
Q 022831 153 PLCQVMLRVGDLGRSIKFYEKALG 176 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG 176 (291)
+++...+.+++++...+||+..|-
T Consensus 11 p~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 11 PVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred ccccCCCccccccchhHHHHHHHH
Confidence 345555666888999999998663
No 208
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.21 E-value=73 Score=20.43 Aligned_cols=52 Identities=21% Similarity=0.028 Sum_probs=30.8
Q ss_pred EEEEecChHHHHHHHHHHHHhhCCeeeecccccCCCC--ceEEEEECCCCCeEE
Q 022831 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLN--TKITSFVDPDGWKTV 277 (291)
Q Consensus 226 ia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~--~~~~~~~DPdG~~ie 277 (291)
+.+...|-..++.++-..+..+|+++.....-..+.+ .-.+++.|++|..+.
T Consensus 4 i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~ 57 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIG 57 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCC
Confidence 4445556555555554455999999887543222111 135778999988643
No 209
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.71 E-value=1.7e+02 Score=22.23 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=40.2
Q ss_pred ceeeeeeeCCchhhHHHHHHhcCCe--eeeeccCcccceeeeeeccCCCCc---ceEEEEeEecCceeeccCceeeEEEE
Q 022831 154 LCQVMLRVGDLGRSIKFYEKALGMK--LLRTIDSPELKCALAMLGYAEEDQ---TTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~g~~hia~ 228 (291)
++|+.+++++.+.+.+|-+..+-.- .+...-+ +..+.++-+..+-.-. -..+||..+.+ ..|+ -.|+-|+-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~IN-GRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Yp-~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEIN-GRPIALIKLEKPLQFAGWSISIVELPFPKD-KKYP-QEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccC-CeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceEEEE
Confidence 6899999999999988887655433 2222111 1112222222111111 12355544322 1222 359999999
Q ss_pred EecC
Q 022831 229 STDD 232 (291)
Q Consensus 229 ~v~d 232 (291)
.++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 8874
No 210
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=38.90 E-value=73 Score=22.46 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=31.9
Q ss_pred ecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC
Q 022831 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
...++..+..+-..+++.|+.+ .+|-+.|....++-..+.|.|+
T Consensus 13 ~~~Ld~~~~~I~~~~k~~g~~~-~GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 13 PEDLDEVCDQIKEIAEKTGVDM-SGPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred HHHHHHHHHHHHHHHHHcCCeE-ECCCcCCceeEEEEeeeCCCCC
Confidence 3447777777766668889876 6777888755566677999975
No 211
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=36.97 E-value=1.5e+02 Score=20.94 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred ECCHHHHHHHHHHcCCeeeeCCccCCCCceEEEE--EECCCCcEE--EEEecCCCCCCceeeeeeeCCchhhHHHHH
Q 022831 100 TEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAF--VKDPDGYIF--ELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~--~~dP~G~~i--el~~~~~~~~~~~hv~l~v~D~~~~~~Fy~ 172 (291)
..+.+.+.++|..+++-.... +..+++... +| ..+..|..+ |+.-.. ..+-..+.+.+.+.+.+..|+.
T Consensus 35 ~~~~~~i~~~L~~~nI~~iA~-~~~~~~~~~-~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 35 VPSPDAIEEKLQANNIFTIAS-GKVDNGQKF-FYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp ---HHHHHHHHHCTT-EEEEE-EECTT-EEE-EEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CCcHHHHHHHHHHCCEEEEec-CCCCccccE-EEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 357899999999999986543 233333333 34 366666554 333332 2335789999999877666663
No 212
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=36.71 E-value=68 Score=19.72 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEechh
Q 022831 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 283 (291)
++++...+- ..+|-.+... ...+ ..-..+|||.++-|++..+
T Consensus 5 ~ls~~ea~~----l~~Gr~l~~~-----~~~g-~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 5 ELSAEEARD----LRHGRRLPAA-----GPPG-PVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp E--HHHHHH----HHTT---B----------S--EEEE-TTS-EEEEEEEET
T ss_pred ECCHHHHHH----HhCCCccCCC-----CCCc-eEEEECCCCcEEEEEEccC
Confidence 344444444 5778766443 1112 3447899999999997644
No 213
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=36.30 E-value=36 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.301 Sum_probs=32.5
Q ss_pred EEEEEecC-hHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCCeEEEEec
Q 022831 225 QVAISTDD-VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 225 hia~~v~d-i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 281 (291)
.|+.+|+| +..+.+-| +.....+.-.|. ..+.+.+..|+.++|+.+|++..
T Consensus 160 aiS~evdDsl~~il~lL----r~~D~sFrpvPh--~~d~ak~~~fqn~~~y~VefLTt 211 (349)
T COG5397 160 AISREVDDSLPPILDLL----RSVDPSFRPVPH--RSDPAKSSAFQNRDGYRVEFLTT 211 (349)
T ss_pred hhhHHhcccccHHHHHH----hccCcccccCCc--cCCCccceeeecCCCeEEEEecc
Confidence 35556654 55555555 655655544443 33345677779999999999983
No 214
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.28 E-value=1.3e+02 Score=19.62 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=29.4
Q ss_pred EEEEecChHHHHHHHHHHHHhhCCeeeeccccc-CCC-CceEEEEECCCCC
Q 022831 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPI-PGL-NTKITSFVDPDGW 274 (291)
Q Consensus 226 ia~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~-~~~-~~~~~~~~DPdG~ 274 (291)
+.+...|-..++.++-..+.++|+++...--.. .++ -...+|+.|++|.
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 444555644555444444599999988754432 221 1135888999887
No 215
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.87 E-value=80 Score=21.09 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=22.1
Q ss_pred CceEEEEEECC----HHHHHHHHHHcCCeee
Q 022831 92 GFGHLAIATED----VYKMVENIRAKGGNVT 118 (291)
Q Consensus 92 ~~~~i~~~v~d----~~~~~~~l~~~G~~~~ 118 (291)
+...+.++|+| ++.+.+.|+++|+++.
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVV 70 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeE
Confidence 34456789888 8899999999999865
No 216
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=31.77 E-value=96 Score=21.80 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=33.2
Q ss_pred EEEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC
Q 022831 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 227 a~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
+|....++..+..+...++..|+.+ .+|-+.|....++-.++.|.++
T Consensus 15 S~d~~~L~~~~~~I~~~~k~~~~~~-~GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 15 SFNHELLNSSCKKIIDTASRTNATA-VGPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCeE-eCCcCCCcEEEEEEEecCCCCC
Confidence 4444567777777766667788876 5677788755566677999874
No 217
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=30.65 E-value=98 Score=19.28 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.9
Q ss_pred EEEEEECCHHHHHHHHHHcCCee
Q 022831 95 HLAIATEDVYKMVENIRAKGGNV 117 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
.+-+.++|.+.+.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 44566788889999999999885
No 218
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=29.88 E-value=1.1e+02 Score=21.54 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=32.1
Q ss_pred EecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC
Q 022831 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
....++..+..+...++..|+.+ .+|.+.|....++...+.|.++
T Consensus 14 d~~~L~~~~~~i~~~a~~~~i~v-~GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 14 DHRLLDQSAKKIVETAKRTGAQV-RGPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeE-ECCcCCCcEEEEEEEeeCCCCC
Confidence 33457777777766668889886 6677777755566678999986
No 219
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=29.51 E-value=1.7e+02 Score=19.52 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=16.8
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEE
Q 022831 28 VYRVGDLDRTIKYYTECFGMELLRK 52 (291)
Q Consensus 28 ~l~v~d~~~~~~FY~~~lG~~~~~~ 52 (291)
.....+=..+.++|++ |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344677789999988 99998754
No 220
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.38 E-value=1.3e+02 Score=24.53 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.5
Q ss_pred eCCchhhHHHHHHhcCCeeeeeccCcccceeeeeeccCCCCc
Q 022831 161 VGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQ 202 (291)
Q Consensus 161 v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (291)
..|+.+++.||.+.||+...... +......|....+.+.
T Consensus 144 sa~~~e~a~wy~dyLGleie~~h---gevikfiFTnIdpkdp 182 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNIDPKDP 182 (246)
T ss_pred hhccHHHHHHHHHhcCceeeecc---CceEEEEEeccCCCCC
Confidence 45788899999999999976542 3335556655544443
No 221
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.34 E-value=1.2e+02 Score=24.76 Aligned_cols=20 Identities=20% Similarity=0.629 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHhcCCEEEE
Q 022831 32 GDLDRTIKYYTECFGMELLR 51 (291)
Q Consensus 32 ~d~~~~~~FY~~~lG~~~~~ 51 (291)
.|..++..||.+.||+++..
T Consensus 145 a~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hccHHHHHHHHHhcCceeee
Confidence 46788899999999999864
No 222
>PRK11700 hypothetical protein; Provisional
Probab=29.21 E-value=2.9e+02 Score=21.88 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred ccceeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCceeeEEeeccCC-----CcceEEEeeecCCCCcccCCCCceE
Q 022831 21 KRRLLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPE-----QSYFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~~~~~~~~~~~g~~~~~ 95 (291)
-..++|+.++|++.+.+.++-+..+-.--.-. ++.=++..+..+.+... ..--.+||+++.. +.| .-.|+-|
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llS-en~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Y-p~eGWEH 113 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLS-ENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRY-PHEGWEH 113 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhh-ccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceE
Confidence 35689999999999999998887653322111 11112333444433210 1112356665533 222 3348999
Q ss_pred EEEEECC
Q 022831 96 LAIATED 102 (291)
Q Consensus 96 i~~~v~d 102 (291)
|-+-++-
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9999863
No 223
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=28.54 E-value=57 Score=28.05 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=22.5
Q ss_pred cCceeeEEEEEe------cChHHHHHHHHHHHHhhCCeee
Q 022831 219 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 219 ~~~g~~hia~~v------~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.|..++|+.+.| .||+++.+.+ +++|+++-
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 367889999999 9999999999 99998865
No 224
>PHA02754 hypothetical protein; Provisional
Probab=28.13 E-value=1.5e+02 Score=18.30 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecC
Q 022831 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~ 148 (291)
+.++.++|.++|+-+.....-...|.. ..+...||..+++.+..
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SGdk--IVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSGDK--IVVITADAIKIELSETE 63 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecCCE--EEEEEcceEEEEEEeee
Confidence 445677888999876543222223433 34566778888877643
No 225
>PTZ00330 acetyltransferase; Provisional
Probab=27.73 E-value=98 Score=22.57 Aligned_cols=27 Identities=7% Similarity=0.367 Sum_probs=19.4
Q ss_pred ceeeEEEEeCCHHHHHHHHHHhcCCEEEEE
Q 022831 23 RLLHAVYRVGDLDRTIKYYTECFGMELLRK 52 (291)
Q Consensus 23 ~i~hv~l~v~d~~~~~~FY~~~lG~~~~~~ 52 (291)
++..+.+.++ ..+.+||++ +||+....
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 3445566654 579999987 99998653
No 226
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=27.72 E-value=1.1e+02 Score=21.34 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=32.5
Q ss_pred EEecChHHHHHHHHHHHHhhCCeeeecccccCCCCceEEEEECCCCC
Q 022831 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
+....++..+..+...+...|+.+ .+|.+.|....++...+.|.++
T Consensus 10 ~d~~~L~~~~~~i~~~a~~~gi~~-~gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 10 YDHRLLDQSTKKIVETAKRTGAQV-KGPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCce-ecccCCCCEEEEEEEeeCCCCC
Confidence 334557777777766668889887 5677777754556667999886
No 227
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=25.88 E-value=1.6e+02 Score=19.39 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=22.2
Q ss_pred EEEEEecChHHHHHHHHHHHHhhCCeeee
Q 022831 225 QVAISTDDVYKSAEVVNLVTQELGGKITR 253 (291)
Q Consensus 225 hia~~v~di~~~~~~l~~~~~~~G~~~~~ 253 (291)
-++-..+|+|++.+++...+++.|.+-+-
T Consensus 19 iv~~~~~d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 19 IVSTESDNVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred EEEEecCCHHHHHHHHHHHHHHcCCCEEE
Confidence 34445679999999998888899887443
No 228
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.54 E-value=1.9e+02 Score=18.57 Aligned_cols=49 Identities=12% Similarity=-0.019 Sum_probs=27.8
Q ss_pred EEEecChHHHHHHHHHHHHhhCCeeeecccccCCC-CceEEEEECCC-CCe
Q 022831 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGL-NTKITSFVDPD-GWK 275 (291)
Q Consensus 227 a~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~-~~~~~~~~DPd-G~~ 275 (291)
.+...|-..++.++-..+.++|+++...-....+. -.-.+++.|++ |..
T Consensus 4 ~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~ 54 (74)
T cd04925 4 ELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAP 54 (74)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCC
Confidence 34445544444444444499999988754332221 11247789988 765
No 229
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.21 E-value=1.6e+02 Score=18.50 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=19.9
Q ss_pred CceEEEEEECC---HHHHHHHHHHcCCee
Q 022831 92 GFGHLAIATED---VYKMVENIRAKGGNV 117 (291)
Q Consensus 92 ~~~~i~~~v~d---~~~~~~~l~~~G~~~ 117 (291)
....+.+++.+ ++++.+.|.+.|+++
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 44567788854 778889999999874
No 230
>PRK11700 hypothetical protein; Provisional
Probab=22.92 E-value=3.9e+02 Score=21.19 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=41.3
Q ss_pred CCceeeeeeeCCchhhHHHHHHhcCCe--eeeeccCcccceeeeeeccCCCCc---ceEEEEeEecCceeeccCceeeEE
Q 022831 152 EPLCQVMLRVGDLGRSIKFYEKALGMK--LLRTIDSPELKCALAMLGYAEEDQ---TTVLELAYSYGVTEYTKGNAYAQV 226 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~g~~hi 226 (291)
-.++|+.++|++.+.+.+|-...+-.- .+...-++ ..+.++-+..+-.-. -..+||..+.+ ..|+ -.|+-||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~ING-RPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp-~eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIING-RPICLFELDQPLQVGHWSIDCVELPYPGE-KRYP-HEGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCC-eeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceEE
Confidence 458999999999999888877655332 22221111 112222222111111 12355544322 1222 3599999
Q ss_pred EEEecC
Q 022831 227 AISTDD 232 (291)
Q Consensus 227 a~~v~d 232 (291)
-+.++.
T Consensus 115 ElVlp~ 120 (187)
T PRK11700 115 ELVLPG 120 (187)
T ss_pred EEEecC
Confidence 998873
No 231
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=22.56 E-value=1.4e+02 Score=20.83 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEe
Q 022831 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~ 146 (291)
.|+.++..+|...|+. ..+.|++|+..+|-.
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgt 51 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELGT 51 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecCC
Confidence 4688889999999865 347999999888753
No 232
>PRK00969 hypothetical protein; Provisional
Probab=21.15 E-value=1.9e+02 Score=26.68 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC------CCCCceeeeeeeCCchhhHHHHHHhc
Q 022831 102 DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~------~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
+++++.+.|.++|++...+-...++ . .+.-++| .+.+++..... ++..+..+.|.-.+..++..|++++-
T Consensus 325 t~~eA~~~~~~~gIel~~eg~~~dd--a-VVV~Q~P-~~TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t 400 (508)
T PRK00969 325 TLKEAEELLEKLGIELEKEGYDGDD--A-VVVEQTP-ETTLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT 400 (508)
T ss_pred CHHHHHHHHHhCCcEEEecCCCCCC--c-EEEecCC-chHHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc
Confidence 5889999999999998754222222 2 1333555 33444443331 35678999999999999999999999
Q ss_pred CCeeee
Q 022831 176 GMKLLR 181 (291)
Q Consensus 176 G~~~~~ 181 (291)
|+....
T Consensus 401 GL~~~~ 406 (508)
T PRK00969 401 GLKTKP 406 (508)
T ss_pred CCcccc
Confidence 998544
No 233
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=20.71 E-value=1.6e+02 Score=18.75 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=17.9
Q ss_pred cceeeEEEEeC-CHHHHHHHHHHhcCCE
Q 022831 22 RRLLHAVYRVG-DLDRTIKYYTECFGME 48 (291)
Q Consensus 22 ~~i~hv~l~v~-d~~~~~~FY~~~lG~~ 48 (291)
.++..+.+.+. +-..+.+||++ +||+
T Consensus 57 ~g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 57 RGIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TTESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred cCccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 34566666663 45569999987 8885
No 234
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.52 E-value=1.7e+02 Score=22.78 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccCCCCceEEEEEECCCCcEEEEEecCC-----CCCCceeeeeeeCCchhhHHHHHHhc
Q 022831 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP-----TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dP~G~~iel~~~~~-----~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
+..+++++.+.+.-.--..+..-.-.|.+. +.++++||..+.+.-.+. +|+.-++.++..++-=++.+++++-=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~Gi-F~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEGI-FDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecceE-EEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 346777766655433222121222245553 668999999988865553 35556677777776556666666655
Q ss_pred CCeeeee
Q 022831 176 GMKLLRT 182 (291)
Q Consensus 176 G~~~~~~ 182 (291)
||....+
T Consensus 157 gWVa~yt 163 (181)
T COG1791 157 GWVAIYT 163 (181)
T ss_pred Cceeeec
Confidence 6654443
Done!