BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022832
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 7/192 (3%)
Query: 97 TQYERSKAVADKIALQAASEGLPIVPVYPGVIYGPGKLTTGNLVAKLMIERFNGRLPGYI 156
+ Y K D+ A + A GLP+V PG++ G +L G +++ NG + Y+
Sbjct: 153 SSYVLCKWALDEQAREQARNGLPVVIGIPGMVLG--ELDIGPTTGRVITAIGNGEMTHYV 210
Query: 157 GYGNDRFSFCHVDDVVDGHIAAMEKGRSGERYLLTGENASFMQIFDMAAVITGTSRPRFC 216
+ + + G + A+E+GR GERYLLTG N + A + G P+
Sbjct: 211 A---GQRNVIDAAEAGRGLLMALERGRIGERYLLTGHNLEMADLTRRIAELLGQPAPQ-P 266
Query: 217 IPLWLIEAYGWILVFFSRITGKLPLISYPTVHVLAHQWAYSCVKAKTELG-YNPRSLKEG 275
+ + + A + R++G+LPL+ + V+A KA+ ELG ++ +L +
Sbjct: 267 MSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDT 326
Query: 276 LQEVLPWLRSSG 287
L + W R +G
Sbjct: 327 LLRAIDWFRDNG 338
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 110/278 (39%), Gaps = 70/278 (25%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS------GLP-SEGALELVYGDVTD 55
+ V+GASG++G L LL++G++VRA VR +++ LP +E L L D+ D
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLAD 67
Query: 56 YRSLVDACFGCHVIFHTAALVEPWLPDPSR------------------------------ 85
S +A GC +FH A ++ DP
Sbjct: 68 EGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS 127
Query: 86 ----------FFAVHEEK-----YFCT-------QYERSKAVADKIALQAASE-GLPIVP 122
V++E FC Y SK +A++ A + A E + +
Sbjct: 128 SAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFIT 187
Query: 123 VYPGVIYGPGKLTT--GNLVAKLMIERFNGRLPGYIGYGNDRFSFCHVDDVVDGHIAAME 180
+ P ++ GP +++ +L+ L N I G F H+DD+ + HI E
Sbjct: 188 IIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQ----FVHLDDLCNAHIYLFE 243
Query: 181 KGRSGERYLLTGENASFMQIFDMAAVITGTSRPRFCIP 218
++ RY+ + + I D+A ++ P + IP
Sbjct: 244 NPKAEGRYICSSHDCI---ILDLAKMLR-EKYPEYNIP 277
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLVDA 62
ILV+G++G +G + AL QG +VR R S G E V G + D ++L DA
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGG-------EEVVGSLEDGQALSDA 74
Query: 63 CFGCHVIFHTAALVEPWLP-DPSRFFAVHEE 92
G + H A + W P D R FAV+ E
Sbjct: 75 IMGVSAVLHLGAFMS-WAPADRDRMFAVNVE 104
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVR----RTSDISGLPS-EGALELVY---GDV 53
++ V+G +G+LG + +LL+ G+SV +R R D+S L + GA E ++ D+
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 54 TDYRSLVDACFGCHVIFHTAALVEPWLPDPSR 85
++ S A GC IFHTA+ ++ + +P
Sbjct: 63 SNPDSFAAAIEGCVGIFHTASPIDFAVSEPEE 94
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 93 KYFCTQYERSKAVADKIALQ-AASEGLPIVP-VYPGVIYGPGKLTTGNLVAKLMIERFNG 150
K F Y SK +A+K L+ G+ +V + P ++ G V + +
Sbjct: 154 KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIV--------GRFVCPKLPDSIEK 205
Query: 151 RLPGYIG----YGNDRFSFCHVDDVVDGHIAAMEKGRSGERY 188
L +G G RF HVDDV HI +E G RY
Sbjct: 206 ALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRY 247
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALE--------LVYGDV 53
+IL+ GA+GY+G + A L GH LVR ++ S LE +V+G +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 54 TDYRSLVDACFGCHVIFHT 72
D+ SLV+A V+ T
Sbjct: 66 DDHASLVEAVKNVDVVIST 84
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 5 VSGASGYLGGRLCHALLKQGHSVRALVR------RTSDISGLPSEGALELVYGDVTDYRS 58
V G +G++ L LL++G++V VR + S + L G L++ D+TD S
Sbjct: 14 VVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELS 73
Query: 59 LVDACFGCHVIFHTAALVEPWLPDPSR 85
GC +FH A V DP
Sbjct: 74 FEAPIAGCDFVFHVATPVHFASEDPEN 100
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 26/118 (22%)
Query: 99 YERSKAVADKIALQAASEG-LPIVPVYPGVIYGPG-------------KLTTGNLVAKLM 144
Y SK +A+K A + A E + ++ V P ++ G L TGN + +
Sbjct: 168 YPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGN---EFL 224
Query: 145 IERFNGR--LPGYIGYGNDRFSFCHVDDVVDGHIAAMEKGRSGERYLLTGENASFMQI 200
I G L G + S HV+DV HI EK + RY+ N S ++
Sbjct: 225 INGMKGMQMLSGSV-------SIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPEL 275
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 112/345 (32%), Gaps = 93/345 (26%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE------GALELVYGDVTD 55
I+V+G +G++G H + V V +G + +ELV GD+ D
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 65
Query: 56 YRSLVDACFGCHVIFHTAALV--EPWLPDPSRFFAVHEEKYFCTQYERSKAVAD------ 107
+ I H AA + L DPS F + F Y +A
Sbjct: 66 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTN----FIGTYTLLEAARKYDIRFH 121
Query: 108 KIALQAASEGLPIVPVYPGVIYGPGKLTTG-----------------NLVAKLMIERFN- 149
++ LP+ PG GPG+ T +L+ K + F
Sbjct: 122 HVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGV 181
Query: 150 ------------------------------GRLPGYIGYGNDRFSFCHVDDVVDGHIAAM 179
G P G G + + H +D G A +
Sbjct: 182 KATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAIL 241
Query: 180 EKGRSGERYLLTGENASFMQIFDMAAVITGTSRPRFCIPLWLIEAYGWILVFFSRITGKL 239
KGR GE YL+ + G + + L ++E G + +T +
Sbjct: 242 TKGRMGETYLIGAD---------------GEKNNKEVLEL-ILEKMGQPKDAYDHVTDRA 285
Query: 240 PLISYPTVHVLAHQWAYSCVKAKTELGYNPR--SLKEGLQEVLPW 282
H L ++A K + ELG+ P+ EGL+E + W
Sbjct: 286 G-------HDL--RYAIDASKLRDELGWTPQFTDFSEGLEETIQW 321
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVR-RTSDISGLPSEGALELVYGDVTDYRSL 59
M+IL++G +G LG L L QGH + + T LP L ++ G VTD L
Sbjct: 21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLL 80
Query: 60 ---VDACFGCHVIFHTAALVEP--WLPD 82
D+ HV+ AA +P W D
Sbjct: 81 ERAFDSFKPTHVVHSAAAYKDPDDWAED 108
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 52/251 (20%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
M+I+V+G +G++G L L++ G+ V + DI + G+ EL D+ DY
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVV-----DIVQRDTGGSAELHVRDLKDYSW-- 53
Query: 61 DACFGCHVIFHTAALVEPWLPDPSRFFAVHEE---KYFCTQYERSKAV------------ 105
A V+FH AA E L +E + ++ R V
Sbjct: 54 GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVY 113
Query: 106 --ADKI---------------ALQAASE----------GLPIVPVYPGVIYGPGKLTTGN 138
AD I A +AA E G+ + V + GP +L G
Sbjct: 114 GDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP-RLRHGV 172
Query: 139 LVAKLMIERFNGRLPGYIGYGNDRFSFCHVDDVVDGHIAAMEKGRSGERYLLTGE--NAS 196
+ +M R N + +G G R S+ +V D V+ +AA +K + L N
Sbjct: 173 IYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVD 232
Query: 197 FMQIFDMAAVI 207
+++ D+A ++
Sbjct: 233 AVRVLDIAQIV 243
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 1 MKILVSGASGYLGGRLCHALLKQ--GHSVRALVRRTSDISGLPSEGALELVYGDVTDYRS 58
M I V+GA+G LGG + LLK+ + A+VR S L +G +E+ +GD S
Sbjct: 1 MSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQG-VEVRHGDYNQPES 59
Query: 59 LVDACFGC 66
L A G
Sbjct: 60 LQKAFAGV 67
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 30/191 (15%)
Query: 99 YERSKAVADKIALQA-ASEGLPIVPVYPGVIYGPGKLTTGNLVAKLMIERFNGR-LPGYI 156
Y SKA AD IAL + LP++ YGP + L+ + G+ LP Y
Sbjct: 174 YSSSKASADXIALAYYKTYQLPVIVTRCSNNYGPYQYPE-KLIPLXVTNALEGKKLPLY- 231
Query: 157 GYGNDRFSFCHVDDVVDGHIAAMEKGRSGERYLLTGENASFMQIFDMAAVITGTSRPRFC 216
G G + + HV D + KGR GE Y + G N
Sbjct: 232 GDGLNVRDWLHVTDHCSAIDVVLHKGRVGEVYNIGGNNEKTN------------------ 273
Query: 217 IPLWLIEAYGWILVFFSRITGKLPLISYPTVHVLAHQWAYSCVKAKTELGYNPR-SLKEG 275
+E I+ + + ++ H ++A + K K E + P+ + ++G
Sbjct: 274 -----VEVVEQIITLLGKTKKDIEYVTDRLGH--DRRYAINAEKXKNEFDWEPKYTFEQG 326
Query: 276 LQEVLPWLRSS 286
LQE + W +
Sbjct: 327 LQETVQWYEKN 337
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRAL-------VRRTSDISGLPSE---GALELVYGDV 53
L++G +G++G L LLK V L R ++ L SE + + GD+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 54 TDYRSLVDACFGCHVIFHTAAL 75
+ +AC G + H AAL
Sbjct: 91 RNLDDCNNACAGVDYVLHQAAL 112
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS--------GLPS---EGALELVYGD 52
L++G +G G L LL++G+ V +VRR+S + P EG ++L YGD
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 87
Query: 53 VTDYRSLV 60
+TD LV
Sbjct: 88 LTDSTCLV 95
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 71
Query: 58 SLVDACFGCHVIFHTAALVEPWLPD 82
LV+ V+ +AL P + D
Sbjct: 72 KLVELMKKVDVVI--SALAFPQILD 94
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 71
Query: 58 SLVDACFGCHVIFHTAALVEPWLPD 82
LV+ V+ +AL P + D
Sbjct: 72 KLVELMKKVDVVI--SALAFPQILD 94
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 9 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 67
Query: 58 SLVDACFGCHVIFHTAALVEPWLPD 82
LV+ V+ +AL P + D
Sbjct: 68 KLVELMKKVDVVI--SALAFPQILD 90
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE----GALELVYGDVTDYR 57
KIL+ G +GY+G + LK GH R S + L E GA+ +V G++ ++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAI-IVKGELDEHE 71
Query: 58 SLVDACFGCHVIFHTAAL 75
LV+ V+ A+
Sbjct: 72 KLVELMKKVDVVISALAV 89
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 164 SFCHVDDVVDGHIAAMEK 181
+ HV D+ DGH+ AMEK
Sbjct: 232 DYIHVMDLADGHVVAMEK 249
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 164 SFCHVDDVVDGHIAAMEK 181
+ HV D+ DGH+ AMEK
Sbjct: 232 DYIHVMDLADGHVVAMEK 249
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSV 27
M++LV+G SGY+G C LL+ GH V
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3 ILVSGASGYLGGRLCHALLKQ--GHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
I V+GA+G LGG + LLK+ + A+VR S L +G +E+ +GD SL
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQG-VEVRHGDYNQPESLQ 61
Query: 61 DACFGC 66
A G
Sbjct: 62 KAFAGV 67
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELV-----------Y 50
KIL+ G +G +G + A +K G+ ALVR+T I+ E EL+
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKT--ITAANPETKEELIDNYQSLGVILLE 61
Query: 51 GDVTDYRSLVDACFGCHVIF 70
GD+ D+ +LV A ++
Sbjct: 62 GDINDHETLVKAIKQVDIVI 81
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSV---RALVRR--TSDISGLPSEGALELVYGDVTDY 56
K+L++G G+LG L L QG + L R+ T ++ L S G E V+GD+ +
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 57 RSLV--------DACF 64
+ D+CF
Sbjct: 63 NDVTRLITKYMPDSCF 78
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS------GLPSEGALELVYGDVTD 55
KI + GA+G G R+ +GH V A+VR I+ + + +L D++D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSD 61
Query: 56 YRSLVDA 62
+VDA
Sbjct: 62 QNVVVDA 68
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 48/251 (19%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
M+I+V+G +G++G L L++ G+ V + +S + A EL D+ DY
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSA-ELHVRDLKDYSW-- 57
Query: 61 DACFGCHVIFHTAALVEPWLPDPSRFFAVHEE---KYFCTQYERSKAV------------ 105
A V+FH AA E L +E + ++ R V
Sbjct: 58 GAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVY 117
Query: 106 --ADKI---------------ALQAASE----------GLPIVPVYPGVIYGPGKLTTGN 138
AD I A +AA E G+ + V + GP +L G
Sbjct: 118 GDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP-RLRHGV 176
Query: 139 LVAKLMIERFNGRLPGYIGYGNDRFSFCHVDDVVDGHIAAMEKGRSGERYLLTGE--NAS 196
+ +M R N + +G G R S+ +V D V+ +AA +K + L N
Sbjct: 177 IYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVD 236
Query: 197 FMQIFDMAAVI 207
+++ D+A ++
Sbjct: 237 AVRVLDIAQIV 247
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVR--RTSDISGLP-----SEGALELVYGDVT 54
++L+ G +GY+G R+ +A + GH L R S+I + + +L+ +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 65
Query: 55 DYRSLVDACFGCHVIFHTAA 74
D++ LVDA V+ A
Sbjct: 66 DHQRLVDALKQVDVVISALA 85
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGL 40
+LV+GA+G++ + LL+ G+ VR R S ++ L
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 3 ILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGL 40
+LV+GA+G++ + LL+ G+ VR R S ++ L
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE-GALELVYGDVTDYRSL 59
++ LV+GA +G AL G V A+ R SD+ L E +E V D+ D+ +
Sbjct: 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDAT 67
Query: 60 VDACFG---CHVIFHTAALV--EPWLPDPSRFFAVHEEKYFCTQYERSKAVADKIALQAA 114
A G ++ + AALV +P+L F ++ F V+ +A
Sbjct: 68 EKALGGIGPVDLLVNNAALVIMQPFLEVTKEAF----DRSFSVNLRSVFQVSQMVARDMI 123
Query: 115 SEGLP 119
+ G+P
Sbjct: 124 NRGVP 128
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 114/338 (33%), Gaps = 86/338 (25%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVR----RTSDISGLPSEGALELVYGDVTDYR 57
+IL++G +G++G L L+ GH V + R ++ EL+ DV +
Sbjct: 7 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE-- 64
Query: 58 SLVDACFGCHVIFHTAALVEP--WLPDPSRFFAVHEEKYFCTQYERSKAVADKIALQAAS 115
I+H A+ P ++ +P + + +K V ++ L + S
Sbjct: 65 ---PLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTL-NMLGLAKRVGARLLLASTS 120
Query: 116 E--GLPIV------------PVYPGVIYGPGK---------------------------- 133
E G P V P+ P Y GK
Sbjct: 121 EVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFG 180
Query: 134 ----LTTGNLVAKLMIERFNGRLPGYIGYGNDRFSFCHVDDVVDGHIAAMEKGRSGERYL 189
+ G +V+ +++ G G G+ +F +V D+V+G +A M S L
Sbjct: 181 PRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNL 240
Query: 190 LTGENASFMQIFDMAAVITGTSRPRFCIPLWLIEAYGWILVFFSRITGKLPLISYPTVHV 249
E + ++ + + G+ G + F S P P +
Sbjct: 241 GNPEEHTILEFAQLIKNLVGS---------------GSEIQFLSEAQDD-PQKRKPDIK- 283
Query: 250 LAHQWAYSCVKAKTELGYNP-RSLKEGLQEVLPWLRSS 286
KAK LG+ P L+EGL + + + R
Sbjct: 284 ----------KAKLMLGWEPVVPLEEGLNKAIHYFRKE 311
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 5/151 (3%)
Query: 57 RSLVDACFGCHVIFHTAALVEPWLPDPSRFFAVHEEKYFCTQYERSKAVADKIALQAASE 116
+ L+ C + F A+ + S F E + Y SK + D+ Q E
Sbjct: 98 KELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPE 157
Query: 117 -GLPIVPVYPGVIYGPGKLTTGNLVA---KLMIERFNGRLPG-YIGYGNDRFSFCHVDDV 171
IV +YGP + G++ + L + NG P + G N + F +V DV
Sbjct: 158 ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDV 217
Query: 172 VDGHIAAMEKGRSGERYLLTGENASFMQIFD 202
D ++ +E G SG L TG SF + D
Sbjct: 218 ADVNLWFLENGVSGIFNLGTGRAESFQAVAD 248
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 80/219 (36%), Gaps = 48/219 (21%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDIS---GLPSEGA--------LELVY 50
+IL++G +G++GG L AL+ G V L D+ +P EG LEL
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVL----DDLRVPPMIPPEGTGKFLEKPVLELEE 64
Query: 51 GDVTDYR--------------------SLVDACFGCHVIFHTAALVEPWLPDPSRFFAVH 90
D++D R L + G H++ ++ P + S
Sbjct: 65 RDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYG 124
Query: 91 EEKYFCTQYE-----RSKAVADKIALQAASEGLPIVPVYPGV-------IYGPGKLTTGN 138
+ T + RS A K+ L+ + V P V +YGPG+
Sbjct: 125 QADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDA- 183
Query: 139 LVAKLMIERFNGRLPGYIGYGNDRFSFCHVDDVVDGHIA 177
LV +L G G R F ++ DVVD +A
Sbjct: 184 LVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVA 222
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 128 IYGPGKLTTGNLVA---KLMIERFNGRLPG-YIGYGNDRFSFCHVDDVVDGHIAAMEKGR 183
+YGP + G++ + L + NG P + G N + F +V DV D ++ +E G
Sbjct: 217 VYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 276
Query: 184 SGERYLLTGENASFMQIFD 202
SG L TG SF + D
Sbjct: 277 SGIFNLGTGRAESFQAVAD 295
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGL-PSEGALELVYGDVTDYRSLV 60
++LV+GA+G +G + L H V R SDI L +E E+V D+ D +++
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEV-----RLSDIVDLGAAEAHEEIVACDLADAQAVH 58
Query: 61 DACFGCHVIFHTA--ALVEPW 79
D C I H ++ PW
Sbjct: 59 DLVKDCDGIIHLGGVSVERPW 79
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 4 LVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE 43
LV+GASG +G + AL++QG V R +I L +E
Sbjct: 36 LVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE 75
>pdb|3LXY|A Chain A, Crystal Structure Of 4-Hydroxythreonine-4-Phosphate
Dehydrogenase From Yersinia Pestis Co92
Length = 334
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 82 DPSRFFAVHEEKYFCTQYERSKAVADKIALQAASEGLPIVPVYPGVIYGPGKLTTGN 138
DP+ A + Q +A IA QA S L I+PV V PGKL GN
Sbjct: 43 DPALLLARASQLNLPLQLREYQADQPAIAQQAGS--LTILPVKTAVNVVPGKLDVGN 97
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 169 DDVVDGHIAAMEKGRSGERYLLTGENASFMQIFDMAAVITGTSRPRFCIPLWLIEAYG 226
+ +V GH + ++ E+YL+ G F+ M I+G S F LW+ G
Sbjct: 194 EQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLS--SFQRSLWIAAKQG 249
>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From
Escherichia Coli
pdb|3ASU|B Chain B, Crystal Structure Of Serine Dehydrogenase From
Escherichia Coli
pdb|3ASV|A Chain A, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|B Chain B, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|C Chain C, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|D Chain D, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|E Chain E, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
pdb|3ASV|F Chain F, The Closed Form Of Serine Dehydrogenase Complexed With
Nadp+
Length = 248
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSE 43
M +LV+GA+ G + ++QGH V A RR + L E
Sbjct: 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDE 43
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 99 YERSKAVADKIALQAASEGLPIVPVYPGVIYGPG---KLTTGNLVAKLMIERFNGRLPGY 155
Y SK D+ L +++ + + Y V YGP K T ++V +L + +
Sbjct: 161 YGFSKLCMDEFVLSHSNDNVQVGLRYFNV-YGPREFYKEKTASMVLQLALGAMAFKEVKL 219
Query: 156 IGYGNDRFSFCHVDDVVDGHIAAMEKGRSG 185
+G F +++DV+ ++ AM+ +SG
Sbjct: 220 FEFGEQLRDFVYIEDVIQANVKAMKAQKSG 249
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN
IV Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME
TERNARY Complex
Length = 206
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSDISGLPSEG--ALELVYGDV 53
KI + GA+G G ++ G+ V LVR D S LPSEG +V GDV
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVR---DSSRLPSEGPRPAHVVVGDV 55
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 2 KILVSGASGYLGGRLCHALLKQGH-SVRALVRRTSDISGLPSEGALELVYGDVTDYRSLV 60
K+L+ G +G++G L +L+ V + +T + L + GD+T + V
Sbjct: 26 KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWV 85
Query: 61 D-ACFGCHVIFHTAALVEP--WLPDPSRFFAVHEE 92
+ C VI A+ P ++ P R F + E
Sbjct: 86 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFE 120
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 1 MKILVSGASGYLGGRLCHALLKQ-GHSV 27
M++LV G +GY+G ALL+ HSV
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSV 30
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 251 AHQWAYSCVKAKTELGYNPR-SLKEGLQEVLPWLRS 285
AH C KA +LG++PR L E L ++ W ++
Sbjct: 300 AHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKA 335
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 251 AHQWAYSCVKAKTELGYNPR-SLKEGLQEVLPWLRS 285
AH C KAK +LG++PR +L L+ ++ W ++
Sbjct: 300 AHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKN 335
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 2 KILVSGASGYLGGRLCHALLKQGHSVRALVRRTSD---------ISGLPS 42
++LV G +G++G L L +GH V + R+ SGLPS
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPS 51
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 1 MKILVSGASGYLGGRLCHALLKQGHSVRAL 30
M++LV+G +G++G + LL +G V L
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVL 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,230,471
Number of Sequences: 62578
Number of extensions: 399217
Number of successful extensions: 1010
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 93
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)