BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022834
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/285 (76%), Positives = 246/285 (86%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
MN FSEGLVLA+KSGL TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261
Query: 241 RLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 285
RLALALGDENAVSMP+ RSLGLGD DFSAV E VK
Sbjct: 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 157/282 (55%), Positives = 189/282 (67%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
GFLGLGIMG ++ NL+R GF VTVWNR +KC LVA GA SPAEV C ITI M
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123
LADPAAA V F GVLE I G+GYIDMSTVD ETS I A+T++GG FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 124 KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 183
K+PAE G L+IL+AG+++L+ +A A +GKK LGEVG GA+MKLVVNMIMG MM
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 184 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 243
EG+ L GLD LL+VLD G +ANPMFKGKG +L + +FPLKH QKD+RLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 244 LALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 285
+ LGD + R+ G D DF+AVF V++
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 193/284 (67%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+ GF+GLGIMG A++ NL++ G VT+WNR+ K +EL A GA +P EV++ C +T
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
MLADPAAA V F K GVLE I G+GY+DMSTVD TS +I A+ +KGG FLEAPVS
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
GSK+PAE G L+IL+AG++ LYDEA+ +GKK LG+VG GA+MKLVVNM+MG MM
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
F EGL L EK+GL +LDV+ G +ANPMF KG + N+APAFPLKH QKD+R
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLR 242
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 285
LA+ALGD + R+ G GD DFSA+F+ +
Sbjct: 243 LAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 183/281 (65%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G++Q + G LVIL+AG++ LY++ S +GK +FFLGEVGN AKM L+VNM+ G M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
T +EGL LA+ +G +TLLD+L+ G +A+ K +LQ N+ P F LK+ QKD+R
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFE 282
LA+ALGD P+ ++L DND SAV+
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 312
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 1/288 (0%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++GF+GLG MGK +++NLL+ G V ++ + +VA GA + +V I
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
L + +V+ GGVL G +DMS+V +++K+++ KG +++APV
Sbjct: 65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + AE G L I+ +A++++ L+VIGK + +G+ G G +K+V N+++GC
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCN 184
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVL-DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239
M + +E LVL K GL P T+ +++ G + M ++ ++A F + Q KD
Sbjct: 185 MASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD 244
Query: 240 MRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKDL 287
+ LAL G E V +P+ R++GLG D SAV +V + +
Sbjct: 245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQM 292
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 135/279 (48%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VGF+GLGI GK S NLL+ G+ + V +R +++A GA + + ++C + I
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + V + G++E PG ID S++ S +IS A+ +KG L+APVS
Sbjct: 67 TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G + A G L + G+KA++D+ G++G G KL +I+ +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
SE L LA K+G++P + + G + + K P + N+ P F + KD+
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLA 246
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 280
AL +P+ R+ G G++D SA+
Sbjct: 247 NALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 7/293 (2%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML A+ G+L+++ G ID ST+D S ++++ + G F++APV
Sbjct: 61 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG A +G L + G + + A L +G + G VG G K+ NM++
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 233
M +E + L + GLDP+ L +L++ NP+ +NY F
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240
Query: 234 KHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKD 286
KD+ LA + + + G DFS+VF+ +++
Sbjct: 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 7/293 (2%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 23 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 82
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML A+ G+L+++ G ID ST+D S ++++ + G F++APV
Sbjct: 83 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 142
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG A +G L + G + + A L +G + G VG G K+ NM++
Sbjct: 143 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 202
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 233
M +E + L + GLDP+ L +L++ NP+ +NY F
Sbjct: 203 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 262
Query: 234 KHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKD 286
KD+ LA + + + G DFS+VF+ +++
Sbjct: 263 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 315
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 124/255 (48%), Gaps = 3/255 (1%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTIT 60
++GF+GLGI G ++NL R G ++ V T+ DEL++ GA + +V + I
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVADELLSLGAVNVETARQVTEFADII 62
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
+ D V+F + G + GK +D S++ + + ++ + G +L+APV
Sbjct: 63 FIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPV 122
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG + A G L I GE+ ++D +++GK +G G+G K+ +I+
Sbjct: 123 SGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALN 182
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240
+ SE LV A K+G DP + L G ++ + + G + + P F + QKD+
Sbjct: 183 IEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKDL 242
Query: 241 RLALALGDENAVSMP 255
LAL A+++P
Sbjct: 243 NLALQSAKALALNLP 257
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 126/280 (45%), Gaps = 2/280 (0%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ FLG G G + L G+ + VWNRT ++ L A GAT+ + I +
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + A V+F +G V PG ++D +++ + + + + G L+ PVS
Sbjct: 93 SXLENGAVVQDVLFAQG-VAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVS 151
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G AE G LVI + G+ A ++ ++ L V G+ A +G G+G KL I+G +
Sbjct: 152 GGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQXIVGITI 210
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241
+E L+ A K G D + + + G + + + G ++ ++AP L Q KD R
Sbjct: 211 GAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQLKDXR 270
Query: 242 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 281
ALA E PI GL D D S +F
Sbjct: 271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLF 310
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 4/245 (1%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ FLGLG +G I+ LL G+++ VWNRT SK + L GATV + + I I
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
+LAD AA + + ++E++ ++ ST+ ETS ++++ G H++ AP+
Sbjct: 67 SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIF 124
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAK-MKLVVNMIMGCM 180
+ I +G + + K F G+ A +KL N + C
Sbjct: 125 ARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACS 184
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP-AFPLKHQQKD 239
+ E AEK+G+ +++ + L A P+F+ G + + Y P AF KD
Sbjct: 185 LEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKD 244
Query: 240 MRLAL 244
+ L L
Sbjct: 245 INLTL 249
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 18/267 (6%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++G++GLG MG ++ + VTV++ + L GAT+ S A+V I
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I +L D A VV + G PG ST+ T+++++R + ++ H ++APV
Sbjct: 76 ITVL-DDAQVREVVGELAG---HAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPV 131
Query: 121 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 180
SG A G+L + ++ +Y+ A GE G G +MKL NM+
Sbjct: 132 SGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTS 191
Query: 181 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSN----------YAPA 230
E + LAE +GLD + L V+ + + G G M++ N Y P
Sbjct: 192 YAAACEAMKLAEAAGLDLQALGRVVRH---TDALTGGPGAIMVRDNMKDLEPDNFLYQPF 248
Query: 231 FPLKH-QQKDMRLALALGDENAVSMPI 256
+ +KD+ LALALG+ +V +P+
Sbjct: 249 LHTRGLGEKDLSLALALGEAVSVDLPL 275
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 25/265 (9%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
+V F+GLG MG ++ +L R F VWNRT K + H G + A V
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
I C T + + A AL +G ++D ++ + E S +++ + KG
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGTY---------WVDATSGEPEASRRLAERLREKGV 109
Query: 114 HFLEAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV 172
+L+APVSG AE G L ++ G E+A+ E + KK +G VG G +K +
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVMLGGPEEAV--ERVRPFLAYAKKVVHVGPVGAGHAVKAI 167
Query: 173 VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL-GGIANPMFKGKGPTMLQSNYAPAF 231
N ++ + EGL+ K G+ L+V++ G +N +L + F
Sbjct: 168 NNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTF 227
Query: 232 PLKHQQKDMRLALALGDENAVSMPI 256
L KD+ +A+ + D P+
Sbjct: 228 ALGLLVKDLGIAMGVLDGEKAPSPL 252
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
+V F+GLG G + +L R F VWNRT K + H G + A V
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
I C T + + A AL +G ++D ++ + E S +++ + KG
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGTY---------WVDATSGEPEASRRLAERLREKGV 109
Query: 114 HFLEAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV 172
+L+APVSG AE G L + G E+A+ E + KK +G VG G +K +
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVXLGGPEEAV--ERVRPFLAYAKKVVHVGPVGAGHAVKAI 167
Query: 173 VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206
N ++ + EGL+ K G+ L+V++
Sbjct: 168 NNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 117/286 (40%), Gaps = 7/286 (2%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ F+GLG G + NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + D G+L I PG ++ ST+ ++ KI A +G L+APVS
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G A G L G+ ++A G+ F G G G K+ N ++ +
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 184
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVL--DLGG-----IANPMFKGKGPTMLQSNYAPAFPLK 234
+E L +GL+ + L ++ GG + NP +Y+ F +
Sbjct: 185 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGFXAQ 244
Query: 235 HQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 280
KD+ LA +A S P G + DFS V
Sbjct: 245 LXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 117/286 (40%), Gaps = 7/286 (2%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ F+GLG G + NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + D G+L I PG ++ ST+ ++ KI A +G L+APVS
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 122 GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 181
G A G L G+ ++A G+ F G G G K+ N ++ +
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 183
Query: 182 NTFSEGLVLAEKSGLDPRTLLDVL--DLGG-----IANPMFKGKGPTMLQSNYAPAFPLK 234
+E L +GL+ + L ++ GG + NP +Y+ F +
Sbjct: 184 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYSGGFXAQ 243
Query: 235 HQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 280
KD+ LA +A S P G + DFS V
Sbjct: 244 LXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 6/268 (2%)
Query: 20 LRNGFKVTVWNRTLS--KCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFD 76
LR G + W L+ C L+A GA S E + ++ + A V+F
Sbjct: 27 LRAGL--STWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFG 84
Query: 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136
+ GV PG ST+ + +I+ A+T+ + L+APVSG A G+ + +
Sbjct: 85 EDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTVXA 144
Query: 137 AGEKALYDEAISALNVIGKKAFFLGEV-GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG 195
+G +A + L+ + + + + G G+ +K++ ++ G + +E LA ++G
Sbjct: 145 SGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAG 204
Query: 196 LDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMP 255
+ DV+ + F+ + ++ +Y P + KD+ L +P
Sbjct: 205 IPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLP 264
Query: 256 IXXXXXXXXXXXRSLGLGDNDFSAVFEV 283
+ + G G D SAV ++
Sbjct: 265 LASTALNXFTSASNAGYGKEDDSAVIKI 292
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A P +K+
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF--- 72
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGG 113
+ L P L +V G I K Y+D + + +I+ +R ++++G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA-------FFLGEVGNG 166
+F+ VSG ++ A G I+ G+K Y+ L I A ++G G G
Sbjct: 133 NFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 191
Query: 167 AKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD 197
+K+V N I M +E L K GL+
Sbjct: 192 HYVKMVHNGIEYGDMQLIAEAYSLL-KGGLN 221
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A P +K+
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF--- 72
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGG 113
+ L P L +V G I K Y+D + + +I+ +R ++++G
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA-------FFLGEVGNG 166
+F+ VSG ++ A G I+ G+K Y+ L I A ++G G G
Sbjct: 133 NFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 191
Query: 167 AKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD 197
+K+V N I M +E L K GL+
Sbjct: 192 HYVKMVHNGIEYGDMQLIAEAYSLL-KGGLN 221
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
++G +G+ +MG+ +++N+ G+ V+V+NR+ K +E++A P +++
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEF--- 72
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGG 113
+ L P L +V G I K Y+D + + +I+ +R ++++G
Sbjct: 73 VESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA-------FFLGEVGNG 166
+F+ VSG ++ G I+ G+K Y+ L I A ++G G G
Sbjct: 133 NFIGTGVSGGEEGTLKGP-SIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAG 191
Query: 167 AKMKLVVNMIMGCMMNTFSEGLVL 190
+K+V N I M +E L
Sbjct: 192 HYVKMVHNGIEYGDMQLIAEAYAL 215
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATVGGSPAEVIKKCTI 59
++G +GL +MGK +++N+ G+ V V+NR K DE + A G + G+ +
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYS-----IEE 60
Query: 60 TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
+ L P L +V K G +EQ+ P G ID + + + ++ +
Sbjct: 61 FVNALEKPRKILLMV--KAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 118
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEV 163
G HF+ VSG ++ A G I+ G+K ++ EAI+A V G+ ++G
Sbjct: 119 LGIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAA-KVDGEPCTTYIGPD 176
Query: 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVL 205
G G +K+V N I M +E L + G+D L +V
Sbjct: 177 GAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATVGGSPAEVIKKCTI 59
++G +GL +MGK +++N+ G+ V V+NR K DE + A G + G+ +
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYS-----IEE 61
Query: 60 TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
+ L P L +V K G +EQ+ P G ID + + + ++ +
Sbjct: 62 FVNALEKPRKILLMV--KAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 119
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEV 163
G HF+ VSG ++ A G I+ G+K ++ EAI+A V G+ ++G
Sbjct: 120 LGIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAA-KVDGEPCTTYIGPD 177
Query: 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVL 205
G G +K+V N I M +E L + G+D L +V
Sbjct: 178 GAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 19/205 (9%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
G +G+ +MGK +++N+ G+ V ++NRT SK +E+ + +++ +G
Sbjct: 8 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF---VGS 64
Query: 64 LADPAAALSVV---FDKGGVLEQICP----GKGYIDMSTVDHETSIKISRAITSKGGHFL 116
L P + +V ++ + P G ID +++ + + G +F+
Sbjct: 65 LEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFI 124
Query: 117 EAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA--------FFLGEVGNGAK 168
VSG ++ A G ++ G+K YD I KA ++G G G
Sbjct: 125 GTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 183
Query: 169 MKLVVNMIMGCMMNTFSEGLVLAEK 193
+K+V N I M +E L ++
Sbjct: 184 VKMVHNGIEYGDMQLIAESYDLLKR 208
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 19/205 (9%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
G +G+ +MGK +++N+ G+ V ++NRT SK +E+ + +++ +G
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF---VGS 65
Query: 64 LADPAAALSVV---FDKGGVLEQICP----GKGYIDMSTVDHETSIKISRAITSKGGHFL 116
L P + +V ++ + P G ID +++ + + G +F+
Sbjct: 66 LEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFI 125
Query: 117 EAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA--------FFLGEVGNGAK 168
VSG ++ A G ++ G+K YD I KA ++G G G
Sbjct: 126 GTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 184
Query: 169 MKLVVNMIMGCMMNTFSEGLVLAEK 193
+K+V N I M +E L ++
Sbjct: 185 VKMVHNGIEYGDMQLIAESYDLLKR 209
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 19/205 (9%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
G +G+ +MGK +++N+ G+ V ++NRT SK +E+ + +++ +G
Sbjct: 7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF---VGS 63
Query: 64 LADPAAALSVV---FDKGGVLEQICP----GKGYIDMSTVDHETSIKISRAITSKGGHFL 116
L P + +V ++ + P G ID +++ + + G +F+
Sbjct: 64 LEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFI 123
Query: 117 EAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA--------FFLGEVGNGAK 168
VSG ++ A G ++ G+K YD I KA ++G G G
Sbjct: 124 GTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
Query: 169 MKLVVNMIMGCMMNTFSEGLVLAEK 193
+K+V N I M +E L ++
Sbjct: 183 VKMVHNGIEYGDMQLIAESYDLLKR 207
>pdb|3L6D|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
pdb|3L6D|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
Length = 306
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+V +GLG G + LL+ G +V +WNR+ K LVA GA + S + T
Sbjct: 10 FDVSVIGLGAXGTIXAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPAT 69
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I +L D A V+ G + + + +D +T + + + + GGH+++ +
Sbjct: 70 IFVLLDNHATHEVLGXPG--VARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGXI 127
Query: 121 ----------------SGSKQPAETGQLVILS-AGEKAL--YDEAISALNVIGKKAF--- 158
+G ++ E + ++ AG +DEA++ V+ AF
Sbjct: 128 VAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAX 187
Query: 159 --FLGEVGNGAKMKLVVNMIMGCMMNT 183
F VG G + L V+ ++ T
Sbjct: 188 VTFFEAVGAGDRFGLPVSKTARLLLET 214
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
+ G +GL +MG+ + +N +GF V +NRT SK D +A+ A
Sbjct: 12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEA 54
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 6 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 48
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 27 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 69
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase
Refined At 2 Angstroms Resolution
Length = 482
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 46
>pdb|4EZB|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
From Sinorhizobium Meliloti 1021
Length = 317
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 90 YIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISA 149
+ID+++V +T + AI + G F+E V ++ P ++ IL AG +A+ E
Sbjct: 117 FIDLNSVGPDTKALAAGAIATGKGSFVEGAVX-ARVPPYAEKVPILVAGRRAV--EVAER 173
Query: 150 LNVIGKKAFFLGEV-GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201
LN +G +GE G + +K + ++ + + E L AE++G+ R L
Sbjct: 174 LNALGXNLEAVGETPGQASSLKXIRSVXIKGVEALLIEALSSAERAGVTERIL 226
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 21/210 (10%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKV--TVWNRTLSKCDELVAHGATVGGSPAEVIKKCT 58
+ VGF+G G + + ++ L G +V ++ R+ S + G T + E + C
Sbjct: 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCP 58
Query: 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118
+ I + P AL G + I Y+D++ + ET ++++ ++ KGG F++A
Sbjct: 59 VVISAVT-PGVALGAARRAGRHVRGI-----YVDINNISPET-VRMASSLIEKGG-FVDA 110
Query: 119 PVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG-EVGNGAKMKLVVNMIM 177
+ GS + + + I+++G A E LN G G E G+ + +K++ +
Sbjct: 111 AIMGSVR-RKGADIRIIASGRDA---EEFMKLNRYGLNIEVRGREPGDASAIKMLRSSYT 166
Query: 178 GCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 207
+ E L A + GL+ DVL++
Sbjct: 167 KGVSALLWETLTAAHRLGLEE----DVLEM 192
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIG 62
LG G +A+ L++ G KV +WNRT K +L V SP EVI K + +
Sbjct: 129 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVN 186
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIG 62
LG G +A+ L++ G KV +WNRT K +L V SP EVI K + +
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVN 192
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+G LGLG +G+A++ G V WNR TLS D +AH SP ++ + +
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVD-WIAH-----QSPVDLARDSDVL 226
Query: 61 IGMLADPAAALSVV 74
+A AA ++V
Sbjct: 227 AVCVAASAATQNIV 240
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 15 ISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45
+++N+ GFKV V+NRT SK +E + A+
Sbjct: 16 LALNIAEKGFKVAVFNRTYSKSEEFMKANAS 46
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR 31
VG LG+G +GKAI+ L+ G K+ W+R
Sbjct: 149 VGILGMGAIGKAIARRLIPFGVKLYYWSR 177
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43
+ LG G G A+++ L R G KV +W+ DE+ A G
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG 72
>pdb|2F1K|A Chain A, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|B Chain B, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|C Chain C, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|D Chain D, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
Length = 279
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40
M++G +GLG++G +++ +L R G + +R S C++ V
Sbjct: 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV 40
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW 29
M V LG G MG A+S+ L+ NG +V +W
Sbjct: 1 MIVSILGAGAMGSALSVPLVDNGNEVRIW 29
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
Length = 215
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VG LG G ++++ L+ +GFKV V +R + L A V V I +
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFV 89
Query: 62 GMLADPAAALSVVFDK 77
+ + ++L + D+
Sbjct: 90 AVFREHYSSLCSLSDQ 105
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 42 HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG----VLEQICPGKGYIDMST 95
HG V G I +T LA+ AAL +++GG ++ +CP K Y D T
Sbjct: 59 HGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELT 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,989,034
Number of Sequences: 62578
Number of extensions: 313891
Number of successful extensions: 756
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 48
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)