Query 022834
Match_columns 291
No_of_seqs 177 out of 2058
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 5.8E-57 1.3E-61 374.8 32.8 285 1-285 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 9.4E-54 2E-58 348.2 31.8 289 1-289 36-325 (327)
3 PRK15059 tartronate semialdehy 100.0 2.2E-50 4.8E-55 344.1 34.7 287 1-288 1-287 (292)
4 PRK15461 NADH-dependent gamma- 100.0 5.2E-49 1.1E-53 337.3 34.9 286 1-286 2-288 (296)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 5.7E-47 1.2E-51 324.0 32.4 280 5-284 1-287 (288)
6 PRK11559 garR tartronate semia 100.0 2.4E-46 5.1E-51 322.2 33.9 287 1-287 3-289 (296)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 3.3E-46 7.2E-51 320.2 34.3 287 2-288 1-287 (291)
8 PLN02858 fructose-bisphosphate 100.0 1.9E-45 4.2E-50 364.1 33.2 286 1-286 5-293 (1378)
9 PLN02858 fructose-bisphosphate 100.0 9.8E-44 2.1E-48 352.1 33.7 286 1-286 325-613 (1378)
10 PRK12490 6-phosphogluconate de 100.0 3.3E-42 7.1E-47 295.9 26.4 279 1-285 1-292 (299)
11 PLN02350 phosphogluconate dehy 100.0 3.5E-41 7.6E-46 302.2 27.6 263 1-267 7-297 (493)
12 PRK09599 6-phosphogluconate de 100.0 8.2E-40 1.8E-44 281.4 26.1 278 1-285 1-293 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 3.7E-36 7.9E-41 258.1 26.3 278 1-286 1-288 (298)
14 PTZ00142 6-phosphogluconate de 100.0 3.3E-35 7E-40 263.7 27.6 254 1-259 2-282 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 3.2E-34 6.8E-39 257.4 25.2 253 2-259 1-278 (467)
16 TIGR03026 NDP-sugDHase nucleot 100.0 1.2E-33 2.7E-38 253.0 23.4 254 1-268 1-297 (411)
17 PRK09287 6-phosphogluconate de 100.0 3.2E-33 7E-38 249.8 25.3 245 11-259 1-271 (459)
18 PF03446 NAD_binding_2: NAD bi 100.0 1.5E-32 3.3E-37 215.4 16.0 161 1-162 2-163 (163)
19 COG1023 Gnd Predicted 6-phosph 100.0 8E-31 1.7E-35 206.9 20.6 276 1-286 1-289 (300)
20 PRK14618 NAD(P)H-dependent gly 100.0 6.5E-31 1.4E-35 229.2 16.6 271 1-286 5-322 (328)
21 PRK15182 Vi polysaccharide bio 100.0 2E-29 4.3E-34 224.9 22.4 252 1-267 7-293 (425)
22 PRK11064 wecC UDP-N-acetyl-D-m 100.0 1.3E-28 2.8E-33 219.8 25.3 250 1-267 4-295 (415)
23 PRK00094 gpsA NAD(P)H-dependen 100.0 2E-29 4.3E-34 220.1 19.4 273 1-285 2-323 (325)
24 PRK15057 UDP-glucose 6-dehydro 100.0 1.2E-28 2.5E-33 217.5 23.9 244 1-267 1-283 (388)
25 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.1E-26 2.5E-31 200.5 22.5 267 1-284 3-296 (308)
26 PRK14619 NAD(P)H-dependent gly 100.0 3.4E-27 7.4E-32 203.8 17.7 254 1-286 5-300 (308)
27 COG1004 Ugd Predicted UDP-gluc 99.9 1.7E-25 3.8E-30 190.4 23.4 256 1-268 1-295 (414)
28 PRK08229 2-dehydropantoate 2-r 99.9 7E-26 1.5E-30 198.9 16.4 260 1-275 3-324 (341)
29 COG0362 Gnd 6-phosphogluconate 99.9 7.3E-25 1.6E-29 185.0 19.0 255 1-259 4-283 (473)
30 PLN02353 probable UDP-glucose 99.9 6.3E-24 1.4E-28 191.1 26.1 253 1-265 2-304 (473)
31 COG0240 GpsA Glycerol-3-phosph 99.9 9.2E-24 2E-28 177.7 20.6 276 1-288 2-325 (329)
32 COG0677 WecC UDP-N-acetyl-D-ma 99.9 1.1E-23 2.3E-28 178.9 18.5 205 1-209 10-254 (436)
33 PLN02688 pyrroline-5-carboxyla 99.9 1.2E-23 2.5E-28 178.5 18.9 250 1-271 1-264 (266)
34 PRK07531 bifunctional 3-hydrox 99.9 1E-22 2.3E-27 186.0 20.0 198 1-214 5-226 (495)
35 PRK12557 H(2)-dependent methyl 99.9 3E-22 6.6E-27 173.5 20.5 198 1-206 1-237 (342)
36 PRK07679 pyrroline-5-carboxyla 99.9 4.8E-22 1E-26 169.4 20.1 249 1-271 4-269 (279)
37 PRK14620 NAD(P)H-dependent gly 99.9 5.9E-22 1.3E-26 172.8 21.1 273 1-284 1-324 (326)
38 PRK06522 2-dehydropantoate 2-r 99.9 6E-22 1.3E-26 171.4 19.4 252 1-269 1-299 (304)
39 PRK12921 2-dehydropantoate 2-r 99.9 1.6E-21 3.5E-26 168.7 21.1 252 1-268 1-301 (305)
40 PRK12439 NAD(P)H-dependent gly 99.9 1.8E-21 3.9E-26 170.2 21.4 271 1-285 8-328 (341)
41 COG0345 ProC Pyrroline-5-carbo 99.9 1.2E-21 2.5E-26 162.2 18.4 248 1-271 2-264 (266)
42 PRK12491 pyrroline-5-carboxyla 99.9 3.7E-21 8E-26 162.6 19.0 250 1-270 3-266 (272)
43 COG1893 ApbA Ketopantoate redu 99.9 1.8E-21 3.8E-26 166.8 16.9 253 1-270 1-302 (307)
44 PRK06249 2-dehydropantoate 2-r 99.9 5.9E-21 1.3E-25 165.4 20.0 240 1-269 6-310 (313)
45 PRK05708 2-dehydropantoate 2-r 99.9 2.6E-21 5.7E-26 166.7 17.3 257 1-273 3-303 (305)
46 PRK08507 prephenate dehydrogen 99.9 6.2E-20 1.3E-24 156.2 23.2 192 1-206 1-207 (275)
47 KOG2653 6-phosphogluconate deh 99.9 4.4E-21 9.5E-26 159.8 15.5 254 1-259 7-286 (487)
48 PTZ00345 glycerol-3-phosphate 99.9 4.1E-20 8.9E-25 161.1 22.0 274 1-286 12-355 (365)
49 TIGR03376 glycerol3P_DH glycer 99.9 9.9E-20 2.1E-24 157.7 19.7 259 2-265 1-330 (342)
50 PRK07417 arogenate dehydrogena 99.8 6.7E-20 1.5E-24 156.2 17.6 178 1-186 1-191 (279)
51 PF14833 NAD_binding_11: NAD-b 99.8 1.4E-20 3.1E-25 140.3 11.3 121 164-284 1-122 (122)
52 PRK11199 tyrA bifunctional cho 99.8 1.8E-19 3.9E-24 159.1 19.7 178 1-203 99-279 (374)
53 PRK08655 prephenate dehydrogen 99.8 4E-19 8.7E-24 159.7 22.1 194 1-203 1-200 (437)
54 PRK09260 3-hydroxybutyryl-CoA 99.8 7.7E-20 1.7E-24 156.7 16.7 190 1-209 2-221 (288)
55 PRK07680 late competence prote 99.8 2.1E-19 4.6E-24 152.8 17.9 196 1-208 1-205 (273)
56 PRK11880 pyrroline-5-carboxyla 99.8 4.7E-19 1E-23 150.4 19.8 251 1-270 3-264 (267)
57 PRK06130 3-hydroxybutyryl-CoA 99.8 1.1E-18 2.4E-23 151.3 21.8 195 1-211 5-222 (311)
58 PRK08268 3-hydroxy-acyl-CoA de 99.8 2.7E-19 5.9E-24 163.4 18.5 185 2-210 9-227 (507)
59 PRK06476 pyrroline-5-carboxyla 99.8 3.6E-19 7.9E-24 150.2 17.7 243 1-267 1-253 (258)
60 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 1.2E-18 2.7E-23 158.6 17.7 184 1-208 6-223 (503)
61 TIGR01724 hmd_rel H2-forming N 99.8 4.6E-17 9.9E-22 136.2 23.7 154 1-162 1-194 (341)
62 PRK07066 3-hydroxybutyryl-CoA 99.8 3E-17 6.5E-22 140.9 22.3 193 2-211 9-226 (321)
63 PTZ00431 pyrroline carboxylate 99.8 1.1E-17 2.4E-22 141.0 18.6 244 1-270 4-259 (260)
64 PRK07819 3-hydroxybutyryl-CoA 99.8 2.3E-17 5E-22 140.7 18.1 190 2-209 7-226 (286)
65 PRK06928 pyrroline-5-carboxyla 99.8 2.8E-17 6E-22 139.8 16.8 246 1-269 2-265 (277)
66 COG0287 TyrA Prephenate dehydr 99.8 2E-16 4.4E-21 133.1 21.5 174 1-179 4-188 (279)
67 PRK06545 prephenate dehydrogen 99.8 2.1E-16 4.5E-21 139.3 22.2 194 1-206 1-211 (359)
68 PRK07502 cyclohexadienyl dehyd 99.8 2E-16 4.2E-21 136.9 21.6 172 1-177 7-194 (307)
69 PLN02545 3-hydroxybutyryl-CoA 99.8 5.3E-17 1.1E-21 139.7 17.4 185 2-209 6-223 (295)
70 PRK07530 3-hydroxybutyryl-CoA 99.7 2E-16 4.4E-21 135.9 19.1 186 1-208 5-222 (292)
71 PRK08293 3-hydroxybutyryl-CoA 99.7 3.3E-16 7.1E-21 134.2 19.1 194 1-209 4-225 (287)
72 PLN02256 arogenate dehydrogena 99.7 4E-16 8.7E-21 133.6 18.7 170 1-176 37-218 (304)
73 PRK07634 pyrroline-5-carboxyla 99.7 4.7E-16 1E-20 130.3 18.0 193 1-208 5-209 (245)
74 PRK06035 3-hydroxyacyl-CoA deh 99.7 5E-16 1.1E-20 133.3 17.7 185 2-208 5-224 (291)
75 PRK05808 3-hydroxybutyryl-CoA 99.7 1.8E-15 3.9E-20 129.4 20.0 188 2-208 5-221 (282)
76 TIGR01915 npdG NADPH-dependent 99.7 2E-16 4.2E-21 130.1 13.1 163 1-170 1-197 (219)
77 TIGR00745 apbA_panE 2-dehydrop 99.7 1E-15 2.2E-20 131.7 18.0 241 10-268 1-291 (293)
78 PF03721 UDPG_MGDP_dh_N: UDP-g 99.7 2.4E-16 5.2E-21 125.5 11.3 145 1-148 1-184 (185)
79 COG2085 Predicted dinucleotide 99.7 5E-16 1.1E-20 122.7 12.4 165 1-170 2-188 (211)
80 PLN02712 arogenate dehydrogena 99.7 3.7E-15 8E-20 140.0 16.7 163 1-170 370-545 (667)
81 PRK14806 bifunctional cyclohex 99.7 1.4E-14 3E-19 139.5 20.7 182 1-187 4-201 (735)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 99.6 4.6E-16 9.9E-21 121.1 8.1 136 2-141 1-155 (157)
83 PF03807 F420_oxidored: NADP o 99.6 3.6E-16 7.8E-21 111.6 6.8 90 2-96 1-96 (96)
84 PLN02712 arogenate dehydrogena 99.6 2.2E-14 4.8E-19 134.8 18.4 170 1-176 53-234 (667)
85 PRK08269 3-hydroxybutyryl-CoA 99.6 9.6E-15 2.1E-19 125.9 13.7 180 11-210 1-220 (314)
86 COG1250 FadB 3-hydroxyacyl-CoA 99.6 6.1E-14 1.3E-18 118.7 17.6 252 1-279 4-285 (307)
87 PRK08818 prephenate dehydrogen 99.6 7.2E-14 1.6E-18 122.1 17.9 163 1-182 5-175 (370)
88 PRK05479 ketol-acid reductoiso 99.6 1.8E-13 4E-18 117.4 19.1 193 1-201 18-224 (330)
89 PF10727 Rossmann-like: Rossma 99.6 2.5E-15 5.5E-20 111.3 5.0 107 1-114 11-121 (127)
90 PF02737 3HCDH_N: 3-hydroxyacy 99.6 1.7E-14 3.6E-19 114.7 9.2 151 2-161 1-178 (180)
91 TIGR00465 ilvC ketol-acid redu 99.5 3E-13 6.5E-18 116.2 16.6 192 1-208 4-217 (314)
92 TIGR00112 proC pyrroline-5-car 99.5 1.7E-13 3.8E-18 114.4 14.5 225 23-268 9-244 (245)
93 TIGR02440 FadJ fatty oxidation 99.5 1.9E-12 4.2E-17 123.0 19.7 187 2-206 306-520 (699)
94 PF02153 PDH: Prephenate dehyd 99.5 3.8E-12 8.2E-17 107.2 19.2 166 15-185 1-181 (258)
95 KOG3124 Pyrroline-5-carboxylat 99.5 1.1E-12 2.3E-17 106.0 14.3 251 1-270 1-264 (267)
96 PRK11154 fadJ multifunctional 99.5 3.7E-12 8E-17 121.4 19.4 187 1-206 310-525 (708)
97 PRK11730 fadB multifunctional 99.5 4E-12 8.7E-17 121.2 19.1 187 2-207 315-529 (715)
98 TIGR02437 FadB fatty oxidation 99.4 4E-12 8.8E-17 120.9 17.5 188 2-208 315-530 (714)
99 KOG2380 Prephenate dehydrogena 99.4 3.9E-12 8.4E-17 106.4 14.1 153 2-161 54-219 (480)
100 KOG2304 3-hydroxyacyl-CoA dehy 99.4 8.5E-13 1.9E-17 104.3 8.8 245 2-277 13-297 (298)
101 TIGR02441 fa_ox_alpha_mit fatt 99.4 6.9E-12 1.5E-16 119.6 16.4 185 2-205 337-549 (737)
102 KOG2666 UDP-glucose/GDP-mannos 99.4 3E-11 6.5E-16 100.2 17.1 240 1-253 2-290 (481)
103 COG4007 Predicted dehydrogenas 99.4 9.5E-11 2.1E-15 94.5 18.1 191 1-199 2-232 (340)
104 PRK13403 ketol-acid reductoiso 99.3 1.2E-10 2.6E-15 98.7 16.1 192 1-200 17-221 (335)
105 KOG2711 Glycerol-3-phosphate d 99.3 6E-11 1.3E-15 99.6 12.4 272 2-288 23-368 (372)
106 PRK07574 formate dehydrogenase 99.3 4.2E-11 9.2E-16 105.5 12.2 111 1-113 193-303 (385)
107 PLN03139 formate dehydrogenase 99.3 5.7E-11 1.2E-15 104.6 12.5 111 1-113 200-310 (386)
108 PRK06444 prephenate dehydrogen 99.3 7.7E-10 1.7E-14 88.6 17.4 129 1-176 1-135 (197)
109 PRK12480 D-lactate dehydrogena 99.2 4.3E-11 9.3E-16 104.0 10.3 105 1-111 147-251 (330)
110 cd01065 NAD_bind_Shikimate_DH 99.2 1.6E-11 3.5E-16 95.5 6.8 112 1-118 20-138 (155)
111 PRK13243 glyoxylate reductase; 99.2 8.3E-11 1.8E-15 102.5 9.9 107 1-111 151-257 (333)
112 PF02558 ApbA: Ketopantoate re 99.2 4.3E-11 9.3E-16 92.7 5.8 102 3-110 1-116 (151)
113 PRK08605 D-lactate dehydrogena 99.2 1.4E-10 3.1E-15 101.1 9.7 107 1-112 147-254 (332)
114 PRK13302 putative L-aspartate 99.2 4.5E-10 9.7E-15 95.1 11.6 109 1-116 7-120 (271)
115 PF02826 2-Hacid_dh_C: D-isome 99.1 1.3E-10 2.8E-15 92.4 6.9 108 1-111 37-144 (178)
116 PRK06436 glycerate dehydrogena 99.1 3.7E-10 8E-15 96.8 10.2 103 1-111 123-226 (303)
117 PF07991 IlvN: Acetohydroxy ac 99.1 2E-10 4.4E-15 87.3 7.5 92 1-97 5-97 (165)
118 KOG2305 3-hydroxyacyl-CoA dehy 99.1 1.1E-09 2.3E-14 87.0 10.5 191 2-209 5-225 (313)
119 PRK15469 ghrA bifunctional gly 99.1 7.1E-10 1.5E-14 95.6 9.3 108 1-112 137-244 (312)
120 PRK13304 L-aspartate dehydroge 99.0 2.5E-09 5.5E-14 90.3 11.2 109 1-116 2-117 (265)
121 TIGR01327 PGDH D-3-phosphoglyc 99.0 2.4E-09 5.2E-14 98.9 10.4 110 1-113 139-248 (525)
122 PRK13581 D-3-phosphoglycerate 99.0 1.9E-09 4.1E-14 99.6 9.1 107 1-111 141-247 (526)
123 TIGR02853 spore_dpaA dipicolin 98.9 6.7E-09 1.5E-13 88.6 9.7 108 2-119 153-262 (287)
124 PLN02928 oxidoreductase family 98.9 5.5E-09 1.2E-13 91.5 9.0 108 1-111 160-279 (347)
125 PF01408 GFO_IDH_MocA: Oxidore 98.9 2.4E-08 5.1E-13 74.0 11.1 108 1-115 1-116 (120)
126 COG0111 SerA Phosphoglycerate 98.9 5.7E-09 1.2E-13 90.1 8.6 108 1-111 143-250 (324)
127 PRK06141 ornithine cyclodeamin 98.9 3E-09 6.4E-14 92.2 6.4 108 2-118 127-242 (314)
128 PRK00257 erythronate-4-phospha 98.9 6.7E-09 1.5E-13 91.5 8.4 104 1-111 117-224 (381)
129 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.3E-08 2.7E-13 82.4 9.0 107 1-117 29-137 (200)
130 COG1052 LdhA Lactate dehydroge 98.9 1.6E-08 3.4E-13 87.4 9.9 107 1-111 147-253 (324)
131 PRK14194 bifunctional 5,10-met 98.9 1E-08 2.2E-13 86.8 8.4 73 1-96 160-233 (301)
132 PRK15409 bifunctional glyoxyla 98.8 5.7E-08 1.2E-12 84.3 12.7 107 1-111 146-253 (323)
133 PRK11790 D-3-phosphoglycerate 98.8 1.9E-08 4.2E-13 90.0 9.0 107 1-113 152-258 (409)
134 PF00984 UDPG_MGDP_dh: UDP-glu 98.8 1.2E-07 2.7E-12 66.8 10.8 93 164-265 2-94 (96)
135 COG1712 Predicted dinucleotide 98.8 9.6E-08 2.1E-12 76.1 11.3 103 1-110 1-110 (255)
136 PRK15438 erythronate-4-phospha 98.8 2.7E-08 5.9E-13 87.5 8.5 104 1-111 117-224 (378)
137 PRK08410 2-hydroxyacid dehydro 98.7 4.4E-08 9.6E-13 84.7 8.8 106 1-113 146-251 (311)
138 COG1748 LYS9 Saccharopine dehy 98.7 8.8E-08 1.9E-12 83.9 10.4 115 1-123 2-128 (389)
139 PRK08306 dipicolinate synthase 98.7 8.6E-08 1.9E-12 82.3 9.7 107 1-117 153-261 (296)
140 PRK06487 glycerate dehydrogena 98.7 1.9E-07 4.2E-12 80.9 11.6 101 2-111 150-250 (317)
141 KOG0069 Glyoxylate/hydroxypyru 98.7 1E-07 2.3E-12 81.6 9.5 107 2-111 164-270 (336)
142 PRK14188 bifunctional 5,10-met 98.7 8.5E-08 1.8E-12 81.4 8.7 72 1-96 159-232 (296)
143 PRK06932 glycerate dehydrogena 98.7 1.1E-07 2.4E-12 82.2 9.6 104 1-112 148-251 (314)
144 COG0059 IlvC Ketol-acid reduct 98.7 1.1E-07 2.4E-12 79.1 8.3 191 2-200 20-224 (338)
145 PLN02306 hydroxypyruvate reduc 98.7 1.6E-07 3.4E-12 83.2 9.7 109 1-111 166-289 (386)
146 PRK13301 putative L-aspartate 98.6 3.6E-07 7.9E-12 75.7 11.1 115 1-123 3-126 (267)
147 cd05213 NAD_bind_Glutamyl_tRNA 98.6 5.8E-08 1.2E-12 84.1 6.6 91 1-95 179-274 (311)
148 PF01113 DapB_N: Dihydrodipico 98.6 1.9E-07 4.2E-12 69.5 8.2 99 1-106 1-111 (124)
149 PF01488 Shikimate_DH: Shikima 98.6 2.2E-08 4.7E-13 75.8 2.9 68 2-69 14-88 (135)
150 TIGR00507 aroE shikimate 5-deh 98.6 1.1E-07 2.4E-12 80.7 7.2 112 2-119 119-237 (270)
151 TIGR01763 MalateDH_bact malate 98.6 3.6E-07 7.8E-12 78.8 9.8 93 1-98 2-122 (305)
152 PRK05225 ketol-acid reductoiso 98.6 1.2E-07 2.7E-12 83.8 6.6 147 1-156 37-200 (487)
153 PRK02318 mannitol-1-phosphate 98.6 9.8E-07 2.1E-11 78.7 12.1 92 1-96 1-124 (381)
154 COG5495 Uncharacterized conser 98.5 4.4E-06 9.5E-11 66.9 13.6 189 1-199 11-206 (289)
155 TIGR02371 ala_DH_arch alanine 98.5 2.1E-07 4.6E-12 81.0 6.8 91 2-100 130-228 (325)
156 PRK13303 L-aspartate dehydroge 98.5 1E-06 2.2E-11 74.5 10.7 116 1-123 2-125 (265)
157 PRK00048 dihydrodipicolinate r 98.5 1.3E-06 2.8E-11 73.6 10.3 110 1-119 2-115 (257)
158 PRK14179 bifunctional 5,10-met 98.5 4.9E-07 1.1E-11 76.2 7.7 73 1-96 159-232 (284)
159 TIGR01921 DAP-DH diaminopimela 98.5 1.9E-06 4.1E-11 74.0 10.7 100 1-109 4-109 (324)
160 PRK06223 malate dehydrogenase; 98.5 9.3E-07 2E-11 76.6 9.1 91 1-96 3-121 (307)
161 PRK07340 ornithine cyclodeamin 98.4 8.4E-07 1.8E-11 76.5 8.5 92 2-102 127-225 (304)
162 PF00670 AdoHcyase_NAD: S-aden 98.4 8.5E-07 1.8E-11 68.1 7.2 88 2-96 25-112 (162)
163 PTZ00075 Adenosylhomocysteinas 98.4 1.4E-06 3E-11 78.3 9.1 90 1-97 255-344 (476)
164 TIGR00936 ahcY adenosylhomocys 98.4 3.2E-06 6.9E-11 75.1 11.1 98 2-106 197-295 (406)
165 PRK05476 S-adenosyl-L-homocyst 98.4 2.8E-06 6E-11 75.9 10.4 89 2-97 214-302 (425)
166 cd05291 HicDH_like L-2-hydroxy 98.4 2E-06 4.4E-11 74.4 9.3 92 1-96 1-119 (306)
167 PF00056 Ldh_1_N: lactate/mala 98.4 6.2E-07 1.3E-11 68.3 5.3 65 1-65 1-78 (141)
168 smart00859 Semialdhyde_dh Semi 98.4 1.3E-06 2.9E-11 64.9 7.0 91 2-96 1-101 (122)
169 cd05297 GH4_alpha_glucosidase_ 98.4 1.5E-06 3.3E-11 78.3 8.5 66 1-66 1-84 (423)
170 COG2423 Predicted ornithine cy 98.4 1.4E-06 2.9E-11 75.2 7.7 110 2-119 132-250 (330)
171 TIGR00036 dapB dihydrodipicoli 98.4 5E-06 1.1E-10 70.3 10.8 112 1-119 2-125 (266)
172 cd05292 LDH_2 A subgroup of L- 98.4 2.6E-06 5.5E-11 73.7 9.2 67 1-67 1-78 (308)
173 PRK08618 ornithine cyclodeamin 98.3 1.7E-06 3.6E-11 75.5 8.1 92 2-102 129-229 (325)
174 PLN00203 glutamyl-tRNA reducta 98.3 1E-06 2.2E-11 80.9 6.9 93 1-96 267-371 (519)
175 PRK09310 aroDE bifunctional 3- 98.3 9.2E-07 2E-11 80.9 6.3 103 1-118 333-438 (477)
176 PRK06407 ornithine cyclodeamin 98.3 1.2E-06 2.7E-11 75.3 6.7 91 2-100 119-218 (301)
177 COG0673 MviM Predicted dehydro 98.3 6.7E-06 1.5E-10 72.3 11.5 108 1-115 4-121 (342)
178 PRK06823 ornithine cyclodeamin 98.3 1.9E-06 4.1E-11 74.5 7.1 91 2-100 130-228 (315)
179 cd00401 AdoHcyase S-adenosyl-L 98.3 5.3E-06 1.1E-10 74.0 10.1 88 2-96 204-291 (413)
180 PTZ00117 malate dehydrogenase; 98.3 4.1E-06 9E-11 72.8 9.1 92 1-97 6-125 (319)
181 PLN02494 adenosylhomocysteinas 98.3 5.2E-06 1.1E-10 74.5 9.9 97 2-106 256-354 (477)
182 TIGR02992 ectoine_eutC ectoine 98.3 2.2E-06 4.7E-11 74.8 6.7 89 2-98 131-228 (326)
183 cd01080 NAD_bind_m-THF_DH_Cycl 98.2 4E-06 8.8E-11 65.6 7.3 72 2-96 46-118 (168)
184 TIGR01761 thiaz-red thiazoliny 98.2 2E-05 4.4E-10 68.8 12.2 108 1-116 4-119 (343)
185 PRK08291 ectoine utilization p 98.2 3.4E-06 7.3E-11 73.8 7.3 89 1-97 133-230 (330)
186 PRK00045 hemA glutamyl-tRNA re 98.2 1.5E-06 3.2E-11 78.6 5.1 68 1-68 183-254 (423)
187 PRK11579 putative oxidoreducta 98.2 2.4E-05 5.3E-10 68.9 12.3 106 1-115 5-118 (346)
188 PRK06046 alanine dehydrogenase 98.2 3E-06 6.5E-11 73.9 6.3 90 2-100 131-229 (326)
189 PRK12549 shikimate 5-dehydroge 98.2 5E-06 1.1E-10 71.0 7.2 111 2-118 129-249 (284)
190 TIGR03215 ac_ald_DH_ac acetald 98.2 1.3E-05 2.7E-10 68.0 9.4 89 1-96 2-97 (285)
191 cd01339 LDH-like_MDH L-lactate 98.2 8.9E-06 1.9E-10 70.2 8.7 90 3-97 1-118 (300)
192 PRK04148 hypothetical protein; 98.2 1.7E-05 3.8E-10 59.1 9.0 92 1-97 18-114 (134)
193 PRK00258 aroE shikimate 5-dehy 98.2 4.5E-06 9.8E-11 71.2 6.7 112 2-118 125-243 (278)
194 COG0569 TrkA K+ transport syst 98.2 8.3E-06 1.8E-10 67.2 8.0 67 1-67 1-77 (225)
195 PLN02819 lysine-ketoglutarate 98.2 1.8E-05 3.9E-10 77.9 11.5 107 2-116 571-700 (1042)
196 PRK00066 ldh L-lactate dehydro 98.1 1.2E-05 2.5E-10 69.8 8.8 65 1-65 7-82 (315)
197 PF10100 DUF2338: Uncharacteri 98.1 0.0013 2.7E-08 57.6 20.8 261 2-269 3-394 (429)
198 cd01078 NAD_bind_H4MPT_DH NADP 98.1 7.1E-06 1.5E-10 66.2 6.7 92 1-98 29-133 (194)
199 PF01118 Semialdhyde_dh: Semia 98.1 6.5E-06 1.4E-10 61.1 5.8 88 2-96 1-99 (121)
200 PRK00961 H(2)-dependent methyl 98.1 0.00014 3.1E-09 59.9 13.8 112 43-162 128-243 (342)
201 COG0373 HemA Glutamyl-tRNA red 98.1 5.3E-06 1.2E-10 73.3 5.9 66 2-67 180-249 (414)
202 TIGR01035 hemA glutamyl-tRNA r 98.1 3.6E-06 7.9E-11 75.8 5.0 67 2-68 182-252 (417)
203 PTZ00082 L-lactate dehydrogena 98.1 1.5E-05 3.2E-10 69.3 8.4 63 1-64 7-82 (321)
204 TIGR00518 alaDH alanine dehydr 98.1 4.9E-06 1.1E-10 73.7 5.5 93 2-96 169-269 (370)
205 COG2910 Putative NADH-flavin r 98.1 5.6E-06 1.2E-10 64.2 5.0 63 1-65 1-71 (211)
206 PF02254 TrkA_N: TrkA-N domain 98.1 8.4E-05 1.8E-09 54.5 11.1 72 3-74 1-80 (116)
207 PF02423 OCD_Mu_crystall: Orni 98.1 4.4E-06 9.6E-11 72.4 4.9 92 2-99 130-229 (313)
208 PRK10669 putative cation:proto 98.1 4.5E-05 9.8E-10 71.6 11.6 109 2-119 419-535 (558)
209 PF03435 Saccharop_dh: Sacchar 98.1 1.8E-05 4E-10 70.8 8.6 113 3-123 1-127 (386)
210 PRK07589 ornithine cyclodeamin 98.1 6.4E-06 1.4E-10 71.9 5.4 93 2-100 131-231 (346)
211 PRK13940 glutamyl-tRNA reducta 98.0 6.4E-06 1.4E-10 73.8 5.4 68 1-68 182-254 (414)
212 PRK03659 glutathione-regulated 98.0 5.1E-05 1.1E-09 71.7 11.5 108 1-117 401-516 (601)
213 TIGR01723 hmd_TIGR 5,10-methen 98.0 0.00031 6.7E-09 58.1 14.3 112 43-162 126-241 (340)
214 TIGR01850 argC N-acetyl-gamma- 98.0 2.1E-05 4.6E-10 69.1 8.2 89 1-96 1-101 (346)
215 COG4408 Uncharacterized protei 98.0 0.0036 7.8E-08 53.2 20.5 259 2-269 6-396 (431)
216 PRK00436 argC N-acetyl-gamma-g 98.0 2.3E-05 5E-10 68.8 8.0 89 1-97 3-102 (343)
217 PRK10206 putative oxidoreducta 98.0 7.3E-05 1.6E-09 65.8 11.2 109 1-116 2-119 (344)
218 PRK09496 trkA potassium transp 98.0 1.8E-05 4E-10 72.3 7.7 68 1-68 1-77 (453)
219 PRK06199 ornithine cyclodeamin 98.0 1.2E-05 2.7E-10 71.2 6.2 86 2-92 157-257 (379)
220 cd05293 LDH_1 A subgroup of L- 98.0 3.9E-05 8.4E-10 66.4 9.1 91 1-96 4-122 (312)
221 KOG2741 Dimeric dihydrodiol de 98.0 9.4E-05 2E-09 63.2 11.0 111 2-119 8-130 (351)
222 PRK06349 homoserine dehydrogen 98.0 3.3E-05 7.2E-10 69.9 8.7 115 1-121 4-133 (426)
223 PRK08300 acetaldehyde dehydrog 98.0 5.5E-05 1.2E-09 64.4 9.5 89 1-96 5-103 (302)
224 PRK11861 bifunctional prephena 98.0 0.00023 5E-09 68.2 14.8 122 60-185 1-134 (673)
225 PRK14175 bifunctional 5,10-met 97.9 3.7E-05 8.1E-10 65.0 7.9 72 2-96 160-232 (286)
226 PRK06718 precorrin-2 dehydroge 97.9 0.00012 2.6E-09 59.3 10.2 68 1-68 11-82 (202)
227 cd05294 LDH-like_MDH_nadp A la 97.9 4.2E-05 9E-10 66.2 7.8 64 1-65 1-81 (309)
228 cd05311 NAD_bind_2_malic_enz N 97.9 0.00011 2.3E-09 60.7 9.8 104 1-114 26-145 (226)
229 PRK04207 glyceraldehyde-3-phos 97.9 6.6E-05 1.4E-09 65.8 8.9 88 1-95 2-110 (341)
230 PF13380 CoA_binding_2: CoA bi 97.9 3.6E-05 7.7E-10 56.5 6.0 104 1-118 1-108 (116)
231 cd00650 LDH_MDH_like NAD-depen 97.9 5.2E-05 1.1E-09 64.2 7.8 91 3-97 1-122 (263)
232 cd00300 LDH_like L-lactate deh 97.9 7.3E-05 1.6E-09 64.5 8.8 89 3-96 1-117 (300)
233 PRK03562 glutathione-regulated 97.9 0.00015 3.3E-09 68.8 11.3 109 2-119 402-518 (621)
234 cd05191 NAD_bind_amino_acid_DH 97.9 6.4E-05 1.4E-09 52.0 6.6 62 1-94 24-86 (86)
235 KOG0068 D-3-phosphoglycerate d 97.8 0.0001 2.2E-09 62.6 7.7 104 2-109 148-251 (406)
236 PF03447 NAD_binding_3: Homose 97.8 9.6E-05 2.1E-09 54.4 6.9 102 7-115 1-114 (117)
237 cd01483 E1_enzyme_family Super 97.8 0.00036 7.7E-09 53.3 10.2 113 2-122 1-124 (143)
238 PRK14189 bifunctional 5,10-met 97.8 0.00012 2.5E-09 62.0 7.9 72 2-96 160-232 (285)
239 PF02882 THF_DHG_CYH_C: Tetrah 97.8 0.00013 2.8E-09 56.5 7.4 74 1-97 37-111 (160)
240 PLN02602 lactate dehydrogenase 97.8 0.00018 3.9E-09 63.1 9.2 64 1-65 38-114 (350)
241 PRK06270 homoserine dehydrogen 97.7 0.00014 3.1E-09 63.8 8.5 119 1-121 3-154 (341)
242 TIGR02354 thiF_fam2 thiamine b 97.7 8.9E-05 1.9E-09 59.9 6.4 31 2-32 23-54 (200)
243 PRK06719 precorrin-2 dehydroge 97.7 0.0003 6.5E-09 54.6 9.0 65 2-68 15-82 (157)
244 PF01262 AlaDh_PNT_C: Alanine 97.7 6.8E-05 1.5E-09 59.0 5.4 95 1-96 21-141 (168)
245 PRK05086 malate dehydrogenase; 97.7 0.00015 3.3E-09 62.8 8.0 66 1-66 1-79 (312)
246 PF13460 NAD_binding_10: NADH( 97.7 0.0001 2.2E-09 58.6 6.4 62 3-66 1-70 (183)
247 TIGR01759 MalateDH-SF1 malate 97.7 0.00015 3.2E-09 63.0 7.7 92 1-95 4-130 (323)
248 TIGR01809 Shik-DH-AROM shikima 97.7 8.6E-05 1.9E-09 63.4 5.9 67 2-68 127-202 (282)
249 PRK10792 bifunctional 5,10-met 97.6 0.00025 5.3E-09 60.0 8.1 72 2-96 161-233 (285)
250 cd01338 MDH_choloroplast_like 97.6 0.00011 2.4E-09 63.9 6.0 92 1-95 3-129 (322)
251 PF08546 ApbA_C: Ketopantoate 97.6 0.00066 1.4E-08 50.5 9.3 92 165-266 4-123 (125)
252 cd01337 MDH_glyoxysomal_mitoch 97.6 0.00012 2.6E-09 63.2 5.8 91 1-97 1-120 (310)
253 PRK14192 bifunctional 5,10-met 97.6 0.0002 4.3E-09 60.9 7.0 72 2-96 161-233 (283)
254 cd01487 E1_ThiF_like E1_ThiF_l 97.6 0.0003 6.6E-09 55.6 7.5 32 2-33 1-33 (174)
255 cd01076 NAD_bind_1_Glu_DH NAD( 97.6 0.00033 7.1E-09 57.8 7.9 105 1-116 32-156 (227)
256 COG0169 AroE Shikimate 5-dehyd 97.6 0.0002 4.4E-09 60.7 6.7 110 2-118 128-248 (283)
257 PLN00112 malate dehydrogenase 97.6 0.00025 5.4E-09 63.9 7.6 91 2-95 102-227 (444)
258 PRK06392 homoserine dehydrogen 97.6 0.00015 3.3E-09 63.0 6.0 118 1-121 1-145 (326)
259 CHL00194 ycf39 Ycf39; Provisio 97.6 0.00018 3.8E-09 62.7 6.3 65 1-65 1-73 (317)
260 cd05290 LDH_3 A subgroup of L- 97.6 0.00017 3.7E-09 62.3 6.0 64 2-65 1-77 (307)
261 PRK14176 bifunctional 5,10-met 97.5 0.00036 7.9E-09 59.0 7.8 73 1-96 165-238 (287)
262 PRK05442 malate dehydrogenase; 97.5 0.0002 4.3E-09 62.3 6.4 92 1-95 5-131 (326)
263 TIGR00561 pntA NAD(P) transhyd 97.5 0.00038 8.1E-09 63.8 8.3 89 2-96 166-286 (511)
264 PLN02968 Probable N-acetyl-gam 97.5 0.00014 3.1E-09 64.5 5.5 88 1-96 39-136 (381)
265 COG0039 Mdh Malate/lactate deh 97.5 0.00025 5.4E-09 60.7 6.6 64 1-64 1-77 (313)
266 PRK15076 alpha-galactosidase; 97.5 0.00012 2.6E-09 66.2 4.8 66 1-66 2-85 (431)
267 PRK14027 quinate/shikimate deh 97.5 0.00018 3.9E-09 61.4 5.6 111 2-118 129-251 (283)
268 PRK12548 shikimate 5-dehydroge 97.5 0.00046 9.9E-09 59.2 8.1 111 2-118 128-258 (289)
269 PRK08374 homoserine dehydrogen 97.5 0.00036 7.8E-09 61.1 7.5 116 1-123 3-153 (336)
270 cd05211 NAD_bind_Glu_Leu_Phe_V 97.5 0.00091 2E-08 54.7 9.3 106 1-116 24-147 (217)
271 COG0002 ArgC Acetylglutamate s 97.5 0.00044 9.5E-09 59.4 7.4 89 1-96 3-103 (349)
272 TIGR01470 cysG_Nterm siroheme 97.5 0.0019 4.1E-08 52.5 10.8 65 2-67 11-80 (205)
273 cd05212 NAD_bind_m-THF_DH_Cycl 97.5 0.00085 1.8E-08 50.8 8.2 73 2-97 30-103 (140)
274 PRK14874 aspartate-semialdehyd 97.5 0.00031 6.6E-09 61.6 6.6 89 1-96 2-96 (334)
275 PRK14191 bifunctional 5,10-met 97.5 0.00045 9.7E-09 58.4 7.3 73 1-96 158-231 (285)
276 PF02629 CoA_binding: CoA bind 97.5 0.00013 2.8E-09 51.6 3.4 71 2-74 5-79 (96)
277 TIGR02356 adenyl_thiF thiazole 97.4 0.00055 1.2E-08 55.5 7.4 112 2-121 23-145 (202)
278 cd00704 MDH Malate dehydrogena 97.4 0.00029 6.2E-09 61.3 6.0 64 2-65 2-85 (323)
279 PRK14982 acyl-ACP reductase; P 97.4 0.00048 1E-08 60.0 7.2 88 1-95 156-247 (340)
280 PRK14183 bifunctional 5,10-met 97.4 0.00066 1.4E-08 57.3 7.8 72 2-96 159-231 (281)
281 PRK09424 pntA NAD(P) transhydr 97.4 0.00033 7.1E-09 64.3 6.4 91 2-95 167-286 (509)
282 PLN02383 aspartate semialdehyd 97.4 0.00035 7.6E-09 61.2 6.3 89 1-96 8-102 (344)
283 PRK00683 murD UDP-N-acetylmura 97.4 0.0022 4.8E-08 58.1 11.7 112 2-113 5-129 (418)
284 TIGR02717 AcCoA-syn-alpha acet 97.4 0.0011 2.4E-08 60.5 9.6 105 2-117 9-126 (447)
285 PRK01710 murD UDP-N-acetylmura 97.4 0.0033 7.1E-08 57.7 12.7 115 1-115 15-146 (458)
286 PRK03369 murD UDP-N-acetylmura 97.4 0.0024 5.3E-08 59.0 11.6 113 2-114 14-145 (488)
287 PRK12475 thiamine/molybdopteri 97.4 0.00057 1.2E-08 59.8 7.1 111 2-120 26-149 (338)
288 TIGR01757 Malate-DH_plant mala 97.4 0.00064 1.4E-08 60.3 7.3 91 2-95 46-171 (387)
289 PRK09496 trkA potassium transp 97.3 0.002 4.4E-08 58.9 10.8 67 1-67 232-308 (453)
290 PRK05472 redox-sensing transcr 97.3 0.00038 8.2E-09 57.0 5.3 67 2-69 86-159 (213)
291 COG1064 AdhP Zn-dependent alco 97.3 0.0012 2.7E-08 57.1 8.1 86 2-95 169-260 (339)
292 TIGR01772 MDH_euk_gproteo mala 97.3 0.00048 1E-08 59.5 5.4 92 2-97 1-119 (312)
293 PF05368 NmrA: NmrA-like famil 97.3 0.00066 1.4E-08 56.2 6.1 63 3-65 1-73 (233)
294 PRK01390 murD UDP-N-acetylmura 97.3 0.0016 3.5E-08 59.8 9.1 114 2-115 11-143 (460)
295 cd01336 MDH_cytoplasmic_cytoso 97.3 0.0017 3.7E-08 56.6 8.7 92 1-95 3-129 (325)
296 PLN00106 malate dehydrogenase 97.3 0.00063 1.4E-08 59.1 6.0 65 1-65 19-95 (323)
297 COG0771 MurD UDP-N-acetylmuram 97.2 0.0042 9.1E-08 56.0 11.3 116 1-116 8-140 (448)
298 PRK02472 murD UDP-N-acetylmura 97.2 0.0074 1.6E-07 55.2 13.2 113 2-114 7-136 (447)
299 PRK00141 murD UDP-N-acetylmura 97.2 0.0066 1.4E-07 55.9 12.8 114 1-114 16-149 (473)
300 PRK11863 N-acetyl-gamma-glutam 97.2 0.00083 1.8E-08 57.9 6.3 79 1-96 3-83 (313)
301 PRK12749 quinate/shikimate deh 97.2 0.0014 3.1E-08 56.1 7.7 111 2-118 126-255 (288)
302 PRK14178 bifunctional 5,10-met 97.2 0.0011 2.4E-08 55.9 6.8 72 2-96 154-226 (279)
303 COG0686 Ald Alanine dehydrogen 97.2 0.00036 7.8E-09 58.8 3.8 100 2-104 170-278 (371)
304 PRK05671 aspartate-semialdehyd 97.2 0.00069 1.5E-08 59.2 5.7 87 1-96 5-99 (336)
305 PRK08644 thiamine biosynthesis 97.2 0.0015 3.3E-08 53.3 7.3 32 2-33 30-62 (212)
306 PRK14106 murD UDP-N-acetylmura 97.2 0.0031 6.8E-08 57.7 10.1 112 1-112 6-134 (450)
307 PRK14173 bifunctional 5,10-met 97.2 0.002 4.3E-08 54.6 8.0 72 2-96 157-229 (287)
308 COG0289 DapB Dihydrodipicolina 97.2 0.0044 9.5E-08 51.4 9.8 110 1-119 3-124 (266)
309 TIGR01771 L-LDH-NAD L-lactate 97.2 0.0013 2.9E-08 56.6 7.2 88 5-96 1-115 (299)
310 cd01079 NAD_bind_m-THF_DH NAD 97.2 0.0018 3.9E-08 51.4 7.2 86 2-96 64-158 (197)
311 TIGR01758 MDH_euk_cyt malate d 97.2 0.0014 3.1E-08 57.0 7.2 64 2-65 1-84 (324)
312 TIGR01019 sucCoAalpha succinyl 97.2 0.0051 1.1E-07 52.4 10.3 107 2-117 8-119 (286)
313 PRK14170 bifunctional 5,10-met 97.1 0.0023 5E-08 54.1 8.1 72 2-96 159-231 (284)
314 PRK14186 bifunctional 5,10-met 97.1 0.0023 5E-08 54.5 8.0 72 2-96 160-232 (297)
315 PF00393 6PGD: 6-phosphoglucon 97.1 0.0023 5E-08 54.1 7.8 94 166-260 1-105 (291)
316 PRK07688 thiamine/molybdopteri 97.1 0.0039 8.5E-08 54.7 9.6 111 2-120 26-149 (339)
317 PRK14177 bifunctional 5,10-met 97.1 0.0026 5.6E-08 53.8 8.1 72 2-96 161-233 (284)
318 PRK06728 aspartate-semialdehyd 97.1 0.0011 2.4E-08 57.9 6.1 88 1-96 6-101 (347)
319 PRK08328 hypothetical protein; 97.1 0.0052 1.1E-07 50.9 9.7 113 2-122 29-153 (231)
320 PF03720 UDPG_MGDP_dh_C: UDP-g 97.1 0.00094 2E-08 48.1 4.7 84 10-96 17-103 (106)
321 PRK14169 bifunctional 5,10-met 97.1 0.0026 5.5E-08 53.8 7.9 72 2-96 158-230 (282)
322 PF00899 ThiF: ThiF family; I 97.1 0.002 4.4E-08 48.6 6.6 113 1-121 3-126 (135)
323 PRK14166 bifunctional 5,10-met 97.1 0.0027 5.9E-08 53.7 7.9 72 2-96 159-231 (282)
324 PRK14172 bifunctional 5,10-met 97.1 0.0027 5.9E-08 53.6 7.8 72 2-96 160-232 (278)
325 PRK14180 bifunctional 5,10-met 97.1 0.0026 5.7E-08 53.8 7.7 72 2-96 160-232 (282)
326 COG4091 Predicted homoserine d 97.1 0.0059 1.3E-07 52.4 9.6 40 2-41 19-60 (438)
327 PF13241 NAD_binding_7: Putati 97.0 0.0019 4.1E-08 46.3 5.9 69 2-74 9-78 (103)
328 TIGR00978 asd_EA aspartate-sem 97.0 0.0018 3.8E-08 57.0 6.8 89 1-96 1-106 (341)
329 TIGR01851 argC_other N-acetyl- 97.0 0.0025 5.4E-08 54.7 7.4 77 2-96 3-82 (310)
330 TIGR01082 murC UDP-N-acetylmur 97.0 0.014 3E-07 53.4 12.8 112 2-113 1-126 (448)
331 PLN02516 methylenetetrahydrofo 97.0 0.0032 7E-08 53.7 7.9 72 2-96 169-241 (299)
332 PRK14187 bifunctional 5,10-met 97.0 0.0033 7.2E-08 53.4 7.8 72 2-96 162-234 (294)
333 PRK14171 bifunctional 5,10-met 97.0 0.0034 7.3E-08 53.2 7.8 72 2-96 161-233 (288)
334 PRK14193 bifunctional 5,10-met 97.0 0.0037 8.1E-08 52.9 8.0 72 2-96 160-234 (284)
335 KOG3007 Mu-crystallin [Amino a 97.0 0.0029 6.3E-08 52.2 6.9 108 3-119 141-261 (333)
336 PRK00676 hemA glutamyl-tRNA re 97.0 0.002 4.4E-08 55.9 6.5 57 2-63 176-233 (338)
337 COG1648 CysG Siroheme synthase 97.0 0.015 3.3E-07 47.2 11.2 67 1-68 13-84 (210)
338 PRK00421 murC UDP-N-acetylmura 97.0 0.011 2.3E-07 54.4 11.6 113 1-113 8-134 (461)
339 COG2344 AT-rich DNA-binding pr 97.0 0.00086 1.9E-08 52.3 3.7 71 2-74 86-163 (211)
340 PRK08223 hypothetical protein; 97.0 0.0063 1.4E-07 51.7 9.1 114 2-122 29-154 (287)
341 TIGR03855 NAD_NadX aspartate d 97.0 0.0061 1.3E-07 50.3 8.8 85 26-117 5-94 (229)
342 PRK14190 bifunctional 5,10-met 97.0 0.0036 7.7E-08 53.1 7.6 72 2-96 160-232 (284)
343 TIGR01296 asd_B aspartate-semi 97.0 0.0013 2.8E-08 57.7 5.1 88 2-96 1-94 (339)
344 PRK05678 succinyl-CoA syntheta 96.9 0.0096 2.1E-07 50.9 10.2 108 2-118 10-122 (291)
345 COG0190 FolD 5,10-methylene-te 96.9 0.0034 7.3E-08 52.7 7.2 72 2-96 158-230 (283)
346 COG0460 ThrA Homoserine dehydr 96.9 0.0028 6E-08 54.7 6.9 120 1-124 4-145 (333)
347 PTZ00325 malate dehydrogenase; 96.9 0.002 4.3E-08 55.9 6.1 65 2-66 10-86 (321)
348 PRK14182 bifunctional 5,10-met 96.9 0.0043 9.4E-08 52.4 7.9 72 2-96 159-231 (282)
349 PRK12550 shikimate 5-dehydroge 96.9 0.0022 4.8E-08 54.4 6.1 110 2-117 124-237 (272)
350 cd01485 E1-1_like Ubiquitin ac 96.9 0.006 1.3E-07 49.3 8.4 115 2-122 21-148 (198)
351 TIGR02355 moeB molybdopterin s 96.9 0.0073 1.6E-07 50.3 9.1 113 2-122 26-149 (240)
352 TIGR01087 murD UDP-N-acetylmur 96.9 0.017 3.6E-07 52.7 11.9 115 2-116 1-132 (433)
353 TIGR01546 GAPDH-II_archae glyc 96.9 0.0028 6.1E-08 55.0 6.5 67 3-69 1-88 (333)
354 PRK08040 putative semialdehyde 96.9 0.0018 3.9E-08 56.5 5.2 88 1-96 5-99 (336)
355 cd00757 ThiF_MoeB_HesA_family 96.8 0.0097 2.1E-07 49.2 9.1 113 2-122 23-146 (228)
356 PRK14181 bifunctional 5,10-met 96.8 0.0061 1.3E-07 51.7 7.9 72 2-96 155-231 (287)
357 PLN02616 tetrahydrofolate dehy 96.8 0.0055 1.2E-07 53.3 7.7 72 2-96 233-305 (364)
358 PLN02897 tetrahydrofolate dehy 96.8 0.0057 1.2E-07 53.0 7.7 72 2-96 216-288 (345)
359 PRK03803 murD UDP-N-acetylmura 96.8 0.02 4.3E-07 52.5 11.7 122 2-123 8-145 (448)
360 COG1063 Tdh Threonine dehydrog 96.8 0.0076 1.6E-07 53.3 8.7 88 2-96 171-271 (350)
361 TIGR03649 ergot_EASG ergot alk 96.8 0.0033 7.1E-08 53.7 6.2 65 2-66 1-77 (285)
362 PRK05690 molybdopterin biosynt 96.8 0.014 3E-07 48.8 9.7 111 2-120 34-155 (245)
363 PRK01438 murD UDP-N-acetylmura 96.8 0.019 4.1E-07 53.0 11.4 112 2-113 18-149 (480)
364 PF10728 DUF2520: Domain of un 96.7 0.016 3.5E-07 43.4 8.8 122 134-266 4-129 (132)
365 cd01492 Aos1_SUMO Ubiquitin ac 96.7 0.019 4E-07 46.4 9.7 113 1-122 22-145 (197)
366 PF00070 Pyr_redox: Pyridine n 96.7 0.0032 7E-08 42.7 4.5 34 2-35 1-34 (80)
367 PRK04308 murD UDP-N-acetylmura 96.7 0.039 8.5E-07 50.4 13.0 114 1-114 6-138 (445)
368 PRK08664 aspartate-semialdehyd 96.7 0.0049 1.1E-07 54.4 6.8 88 1-96 4-109 (349)
369 PRK14168 bifunctional 5,10-met 96.7 0.0087 1.9E-07 51.0 7.9 72 2-96 163-239 (297)
370 PRK06153 hypothetical protein; 96.7 0.0052 1.1E-07 54.1 6.7 32 2-33 178-210 (393)
371 PRK02006 murD UDP-N-acetylmura 96.7 0.03 6.5E-07 52.0 12.1 113 2-114 9-149 (498)
372 PRK14185 bifunctional 5,10-met 96.7 0.009 1.9E-07 50.8 7.8 72 2-96 159-235 (293)
373 PRK12769 putative oxidoreducta 96.7 0.0068 1.5E-07 58.2 8.0 66 1-66 328-422 (654)
374 PRK15116 sulfur acceptor prote 96.6 0.044 9.4E-07 46.3 11.6 137 2-152 32-187 (268)
375 PLN00141 Tic62-NAD(P)-related 96.6 0.0054 1.2E-07 51.4 6.3 39 1-39 18-57 (251)
376 PRK08762 molybdopterin biosynt 96.6 0.0087 1.9E-07 53.4 7.7 113 2-122 137-260 (376)
377 PRK12809 putative oxidoreducta 96.6 0.0086 1.9E-07 57.3 8.0 66 1-66 311-405 (639)
378 TIGR03366 HpnZ_proposed putati 96.6 0.022 4.8E-07 48.6 9.8 44 2-45 123-167 (280)
379 PRK10538 malonic semialdehyde 96.6 0.013 2.8E-07 48.9 8.2 40 1-40 1-41 (248)
380 cd08230 glucose_DH Glucose deh 96.5 0.014 2.9E-07 51.7 8.6 73 2-74 175-256 (355)
381 PRK14167 bifunctional 5,10-met 96.5 0.012 2.6E-07 50.2 7.8 72 2-96 159-235 (297)
382 PLN02477 glutamate dehydrogena 96.5 0.014 3.1E-07 52.2 8.5 105 1-116 207-331 (410)
383 PRK06813 homoserine dehydrogen 96.5 0.014 3.1E-07 51.2 8.3 120 1-123 3-153 (346)
384 TIGR03466 HpnA hopanoid-associ 96.5 0.0034 7.5E-08 54.5 4.6 64 1-64 1-72 (328)
385 PRK03815 murD UDP-N-acetylmura 96.5 0.018 4E-07 51.8 9.2 107 1-112 1-115 (401)
386 KOG1502 Flavonol reductase/cin 96.5 0.0075 1.6E-07 51.9 6.2 64 1-64 7-86 (327)
387 PRK09880 L-idonate 5-dehydroge 96.5 0.022 4.8E-07 50.1 9.5 44 2-45 172-216 (343)
388 PRK06753 hypothetical protein; 96.4 0.0039 8.5E-08 55.5 4.6 34 1-34 1-34 (373)
389 TIGR01318 gltD_gamma_fam gluta 96.4 0.012 2.7E-07 54.0 7.9 65 2-66 143-236 (467)
390 cd00755 YgdL_like Family of ac 96.4 0.09 1.9E-06 43.5 12.2 147 2-162 13-182 (231)
391 PRK12814 putative NADPH-depend 96.4 0.012 2.6E-07 56.5 8.0 66 1-66 194-288 (652)
392 PF02056 Glyco_hydro_4: Family 96.4 0.0049 1.1E-07 48.7 4.5 65 2-66 1-83 (183)
393 PRK08306 dipicolinate synthase 96.4 0.011 2.4E-07 50.9 7.0 109 2-118 4-120 (296)
394 cd01484 E1-2_like Ubiquitin ac 96.4 0.012 2.5E-07 48.8 6.8 115 2-122 1-126 (234)
395 PRK05562 precorrin-2 dehydroge 96.4 0.047 1E-06 44.7 10.2 68 1-69 26-98 (223)
396 PRK05597 molybdopterin biosynt 96.4 0.022 4.8E-07 50.4 8.8 114 2-123 30-154 (355)
397 PRK06598 aspartate-semialdehyd 96.3 0.0092 2E-07 52.6 6.1 88 1-96 2-100 (369)
398 PLN02520 bifunctional 3-dehydr 96.3 0.01 2.2E-07 55.3 6.8 110 2-116 381-495 (529)
399 PRK02705 murD UDP-N-acetylmura 96.3 0.031 6.6E-07 51.3 9.8 113 2-114 2-137 (459)
400 PRK14174 bifunctional 5,10-met 96.3 0.017 3.7E-07 49.4 7.4 72 2-96 161-237 (295)
401 cd05197 GH4_glycoside_hydrolas 96.3 0.0096 2.1E-07 53.8 6.2 64 1-64 1-82 (425)
402 PRK00711 D-amino acid dehydrog 96.3 0.0054 1.2E-07 55.4 4.6 34 1-34 1-34 (416)
403 PRK14184 bifunctional 5,10-met 96.3 0.016 3.5E-07 49.1 7.1 72 2-96 159-235 (286)
404 COG0136 Asd Aspartate-semialde 96.3 0.012 2.7E-07 50.6 6.4 89 1-96 2-99 (334)
405 COG0493 GltD NADPH-dependent g 96.3 0.016 3.6E-07 52.8 7.5 66 1-66 124-218 (457)
406 PRK09414 glutamate dehydrogena 96.2 0.021 4.6E-07 51.7 8.0 108 1-116 233-364 (445)
407 PRK12409 D-amino acid dehydrog 96.2 0.006 1.3E-07 55.1 4.6 32 2-33 3-34 (410)
408 PRK08309 short chain dehydroge 96.2 0.028 6E-07 44.5 7.7 40 1-40 1-40 (177)
409 cd05298 GH4_GlvA_pagL_like Gly 96.2 0.013 2.8E-07 53.1 6.4 64 1-64 1-82 (437)
410 COG0499 SAM1 S-adenosylhomocys 96.2 0.018 3.9E-07 49.8 6.7 86 2-94 211-296 (420)
411 cd05296 GH4_P_beta_glucosidase 96.1 0.013 2.8E-07 52.9 6.2 64 1-64 1-83 (419)
412 PRK10537 voltage-gated potassi 96.1 0.087 1.9E-06 47.2 11.3 106 2-119 242-356 (393)
413 cd01486 Apg7 Apg7 is an E1-lik 96.1 0.017 3.8E-07 49.2 6.4 32 2-33 1-33 (307)
414 PF13450 NAD_binding_8: NAD(P) 96.1 0.0092 2E-07 39.1 3.9 30 5-34 1-30 (68)
415 PRK07538 hypothetical protein; 96.1 0.0072 1.6E-07 54.6 4.5 34 1-34 1-34 (413)
416 COG0026 PurK Phosphoribosylami 96.1 0.013 2.9E-07 50.9 5.8 73 1-74 2-82 (375)
417 KOG0022 Alcohol dehydrogenase, 96.1 0.048 1E-06 46.5 8.8 73 2-74 195-280 (375)
418 cd01489 Uba2_SUMO Ubiquitin ac 96.1 0.021 4.4E-07 49.4 6.9 114 2-122 1-125 (312)
419 PRK08340 glucose-1-dehydrogena 96.1 0.026 5.5E-07 47.5 7.5 40 1-40 1-41 (259)
420 TIGR03736 PRTRC_ThiF PRTRC sys 96.1 0.021 4.5E-07 47.5 6.6 34 1-34 12-56 (244)
421 PRK07411 hypothetical protein; 96.1 0.042 9.1E-07 49.3 9.1 32 2-33 40-72 (390)
422 COG0300 DltE Short-chain dehyd 96.1 0.026 5.7E-07 47.4 7.2 40 2-41 8-48 (265)
423 cd01488 Uba3_RUB Ubiquitin act 96.0 0.019 4.1E-07 49.0 6.4 31 2-32 1-32 (291)
424 PLN02427 UDP-apiose/xylose syn 96.0 0.015 3.3E-07 52.0 6.2 64 1-64 15-94 (386)
425 PRK04663 murD UDP-N-acetylmura 96.0 0.12 2.6E-06 47.2 12.1 113 2-115 9-137 (438)
426 cd01491 Ube1_repeat1 Ubiquitin 96.0 0.038 8.2E-07 47.1 8.2 34 2-35 21-55 (286)
427 PRK07878 molybdopterin biosynt 96.0 0.046 1E-06 49.1 9.1 33 2-34 44-77 (392)
428 PRK07588 hypothetical protein; 96.0 0.009 2E-07 53.6 4.5 34 1-34 1-34 (391)
429 PRK05693 short chain dehydroge 96.0 0.045 9.7E-07 46.4 8.6 40 1-40 1-42 (274)
430 COG1090 Predicted nucleoside-d 96.0 0.01 2.2E-07 49.6 4.3 58 7-64 6-64 (297)
431 COG4221 Short-chain alcohol de 95.9 0.039 8.3E-07 45.4 7.4 83 2-96 7-91 (246)
432 PRK12810 gltD glutamate syntha 95.9 0.03 6.5E-07 51.6 7.8 33 1-33 144-176 (471)
433 PRK14851 hypothetical protein; 95.9 0.049 1.1E-06 52.2 9.2 114 2-122 45-170 (679)
434 PLN03209 translocon at the inn 95.9 0.02 4.2E-07 53.4 6.3 39 2-40 82-121 (576)
435 PRK05866 short chain dehydroge 95.9 0.032 6.9E-07 48.0 7.4 39 2-40 42-81 (293)
436 PRK05600 thiamine biosynthesis 95.9 0.049 1.1E-06 48.4 8.6 33 2-34 43-76 (370)
437 PRK08163 salicylate hydroxylas 95.9 0.01 2.2E-07 53.2 4.4 34 1-34 5-38 (396)
438 PLN02662 cinnamyl-alcohol dehy 95.9 0.03 6.5E-07 48.6 7.2 35 1-35 5-40 (322)
439 PRK06182 short chain dehydroge 95.9 0.051 1.1E-06 46.0 8.5 39 2-40 5-44 (273)
440 TIGR01532 E4PD_g-proteo D-eryt 95.9 0.03 6.6E-07 48.7 7.0 28 2-29 1-32 (325)
441 PF01494 FAD_binding_3: FAD bi 95.9 0.012 2.5E-07 51.6 4.6 34 2-35 3-36 (356)
442 PRK05884 short chain dehydroge 95.9 0.017 3.6E-07 47.5 5.3 41 1-41 1-42 (223)
443 PRK11908 NAD-dependent epimera 95.9 0.019 4.1E-07 50.6 5.9 63 1-63 2-75 (347)
444 PRK14852 hypothetical protein; 95.8 0.056 1.2E-06 53.3 9.4 114 2-122 334-459 (989)
445 PLN02353 probable UDP-glucose 95.8 0.076 1.7E-06 48.8 9.9 108 1-117 325-464 (473)
446 TIGR03219 salicylate_mono sali 95.8 0.011 2.5E-07 53.4 4.5 34 1-34 1-35 (414)
447 PRK05653 fabG 3-ketoacyl-(acyl 95.8 0.034 7.5E-07 45.9 7.1 38 2-39 7-45 (246)
448 PRK12771 putative glutamate sy 95.8 0.023 5.1E-07 53.6 6.7 66 1-66 138-232 (564)
449 TIGR01202 bchC 2-desacetyl-2-h 95.8 0.047 1E-06 47.3 8.1 71 2-74 147-218 (308)
450 KOG1370 S-adenosylhomocysteine 95.8 0.033 7.1E-07 47.1 6.4 88 2-96 215-303 (434)
451 COG3804 Uncharacterized conser 95.8 0.27 5.8E-06 41.3 11.6 54 1-64 3-58 (350)
452 COG0654 UbiH 2-polyprenyl-6-me 95.8 0.012 2.5E-07 52.9 4.2 33 1-33 3-35 (387)
453 PRK06180 short chain dehydroge 95.8 0.05 1.1E-06 46.2 7.9 40 2-41 6-46 (277)
454 PRK07326 short chain dehydroge 95.8 0.04 8.7E-07 45.4 7.2 38 2-39 8-46 (237)
455 PRK12939 short chain dehydroge 95.7 0.041 8.8E-07 45.7 7.2 39 1-39 8-47 (250)
456 PRK05993 short chain dehydroge 95.7 0.053 1.1E-06 46.1 8.0 41 2-42 6-47 (277)
457 PRK12779 putative bifunctional 95.7 0.026 5.7E-07 56.2 6.8 66 1-66 307-402 (944)
458 PRK05868 hypothetical protein; 95.7 0.015 3.2E-07 51.9 4.7 35 1-35 2-36 (372)
459 PRK07774 short chain dehydroge 95.7 0.041 8.8E-07 45.8 7.1 38 2-39 8-46 (250)
460 PRK07236 hypothetical protein; 95.7 0.014 3E-07 52.3 4.5 34 1-34 7-40 (386)
461 PRK08017 oxidoreductase; Provi 95.7 0.024 5.2E-07 47.4 5.6 40 2-41 4-44 (256)
462 PRK07890 short chain dehydroge 95.7 0.045 9.7E-07 45.8 7.2 38 2-39 7-45 (258)
463 PLN02896 cinnamyl-alcohol dehy 95.7 0.03 6.4E-07 49.5 6.4 39 1-39 11-50 (353)
464 PRK14573 bifunctional D-alanyl 95.7 0.21 4.5E-06 49.4 12.8 112 2-113 6-131 (809)
465 PRK03806 murD UDP-N-acetylmura 95.6 0.24 5.1E-06 45.2 12.4 113 2-115 8-134 (438)
466 COG0702 Predicted nucleoside-d 95.6 0.029 6.2E-07 47.4 6.0 64 1-65 1-72 (275)
467 PRK12429 3-hydroxybutyrate deh 95.6 0.044 9.5E-07 45.8 7.0 39 2-40 6-45 (258)
468 TIGR01745 asd_gamma aspartate- 95.6 0.022 4.9E-07 50.1 5.2 89 1-96 1-99 (366)
469 TIGR02130 dapB_plant dihydrodi 95.6 0.21 4.5E-06 42.2 10.7 108 2-119 2-123 (275)
470 PRK07454 short chain dehydroge 95.6 0.044 9.5E-07 45.4 6.8 38 2-39 8-46 (241)
471 TIGR02964 xanthine_xdhC xanthi 95.6 0.096 2.1E-06 43.8 8.7 33 2-34 102-134 (246)
472 COG0451 WcaG Nucleoside-diphos 95.6 0.023 4.9E-07 49.0 5.2 38 1-38 1-39 (314)
473 PRK12829 short chain dehydroge 95.6 0.054 1.2E-06 45.4 7.3 40 1-40 12-52 (264)
474 PLN02695 GDP-D-mannose-3',5'-e 95.5 0.014 3E-07 52.0 3.9 33 1-33 22-55 (370)
475 PRK07825 short chain dehydroge 95.5 0.068 1.5E-06 45.2 7.9 39 2-40 7-46 (273)
476 PRK07364 2-octaprenyl-6-methox 95.5 0.016 3.5E-07 52.3 4.3 34 1-34 19-52 (415)
477 PRK06057 short chain dehydroge 95.5 0.091 2E-06 44.0 8.5 39 2-40 9-48 (255)
478 cd08239 THR_DH_like L-threonin 95.5 0.11 2.4E-06 45.5 9.4 43 2-44 166-209 (339)
479 PF04321 RmlD_sub_bind: RmlD s 95.5 0.016 3.5E-07 49.7 4.0 56 1-64 1-59 (286)
480 cd08237 ribitol-5-phosphate_DH 95.5 0.089 1.9E-06 46.3 8.8 62 2-65 166-231 (341)
481 PRK12828 short chain dehydroge 95.5 0.078 1.7E-06 43.6 8.0 82 2-95 9-91 (239)
482 PRK06124 gluconate 5-dehydroge 95.5 0.065 1.4E-06 44.8 7.5 38 2-39 13-51 (256)
483 KOG1495 Lactate dehydrogenase 95.5 0.039 8.4E-07 45.9 5.8 64 2-65 22-97 (332)
484 TIGR03201 dearomat_had 6-hydro 95.5 0.1 2.3E-06 45.9 9.1 43 2-44 169-211 (349)
485 TIGR02822 adh_fam_2 zinc-bindi 95.4 0.077 1.7E-06 46.4 8.2 71 2-72 168-239 (329)
486 PRK07814 short chain dehydroge 95.4 0.056 1.2E-06 45.5 7.1 39 2-40 12-51 (263)
487 cd05312 NAD_bind_1_malic_enz N 95.4 0.088 1.9E-06 44.5 8.0 93 2-98 27-144 (279)
488 PRK05867 short chain dehydroge 95.4 0.057 1.2E-06 45.1 7.0 39 2-40 11-50 (253)
489 PRK06139 short chain dehydroge 95.4 0.062 1.3E-06 47.1 7.4 39 2-40 9-48 (330)
490 PRK13394 3-hydroxybutyrate deh 95.4 0.058 1.3E-06 45.2 7.0 39 2-40 9-48 (262)
491 PRK07024 short chain dehydroge 95.4 0.055 1.2E-06 45.4 6.9 40 1-40 3-43 (257)
492 cd01490 Ube1_repeat2 Ubiquitin 95.4 0.072 1.6E-06 48.1 7.8 33 2-34 1-39 (435)
493 PRK01368 murD UDP-N-acetylmura 95.4 0.18 3.8E-06 46.3 10.5 114 2-116 8-134 (454)
494 cd01493 APPBP1_RUB Ubiquitin a 95.4 0.11 2.5E-06 46.9 9.1 115 2-122 22-147 (425)
495 cd00762 NAD_bind_malic_enz NAD 95.4 0.14 3E-06 42.7 8.8 93 2-98 27-145 (254)
496 PRK04690 murD UDP-N-acetylmura 95.4 0.33 7.1E-06 44.8 12.3 112 2-113 10-142 (468)
497 PRK06847 hypothetical protein; 95.3 0.023 4.9E-07 50.6 4.5 33 2-34 6-38 (375)
498 PRK07231 fabG 3-ketoacyl-(acyl 95.3 0.059 1.3E-06 44.8 6.7 38 2-39 7-45 (251)
499 PRK07523 gluconate 5-dehydroge 95.3 0.071 1.5E-06 44.6 7.2 38 2-39 12-50 (255)
500 PRK06019 phosphoribosylaminoim 95.3 0.048 1E-06 48.7 6.4 62 1-62 3-69 (372)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=5.8e-57 Score=374.78 Aligned_cols=285 Identities=39% Similarity=0.663 Sum_probs=277.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..|+.+|.++||+|++|||++++ .+.+.+.|.....++.|++..+|+||+|||++.++++|+|++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 79999999999999999999999999999999999 66666779999999999999999999999999999999999889
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEe
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~ 159 (291)
+.+.+++++++||+||..|...+++.+.+.+.|..|+|+|++|+...+..|++++++||+++.+++++++|+.+|.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d 239 (291)
+|+.|.++.+|+++|++...+++.++|++.++++.|+|++.++++++.+...||+++++.+++.+++|+|+|.+..|.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
++++.+.+++.++++|+...+.++++.+.+.|++.+|++++++.|+
T Consensus 241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=9.4e-54 Score=348.15 Aligned_cols=289 Identities=43% Similarity=0.758 Sum_probs=281.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..|+.+|.++||+|++|||+.++++.+.+.|..+.+++.|+++++|+||.+||++.++++++++..++
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv 115 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV 115 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCcEE-EEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEe
Q 022834 81 LEQICPGKGY-IDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 81 ~~~l~~~~~v-v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~ 159 (291)
+..++++... ||.||+.|.+..++.+.+..++..|+|+|++|+...++.|+++++++|+++.+++..++|+.+|+++++
T Consensus 116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence 8888888777 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d 239 (291)
+|..|.+..+|+++|++....+..++|++.++++.|+|...++++++.+.+.|+++.+..|.+.+++|.|+|++..|.||
T Consensus 196 ~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KD 275 (327)
T KOG0409|consen 196 LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKD 275 (327)
T ss_pred ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhhc
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR 289 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~ 289 (291)
++++.+.+.+.+.|+|+....+++++...+.|+++.|++++++.++.++-
T Consensus 276 Lgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~ 325 (327)
T KOG0409|consen 276 LGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNG 325 (327)
T ss_pred HHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999887654
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.2e-50 Score=344.13 Aligned_cols=287 Identities=29% Similarity=0.498 Sum_probs=271.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..|+++|.++||+|++|||++. .+.+.+.|.....++.++++++|+||+|+|++.++++++++..++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 8999999999999999999999999999999874 577777888888899999999999999999998999999765567
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+.+++++||+||..|.+.+++.+.+.++|..|+++|++|++..+..|++.++++|+++.+++++++|+.+|.+++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
|+.|.+..+|+++|++....+.+++|++.++++.|+|++++++++..+.+.|++++.+.+++..++|.++|++..+.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
+++.+++++.|+++|+.+++.++++.+.+.|++++|++++++++++..
T Consensus 240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~ 287 (292)
T PRK15059 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMA 287 (292)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998743
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-49 Score=337.30 Aligned_cols=286 Identities=30% Similarity=0.475 Sum_probs=269.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+||+|||+|.||..|+..|+++||+|++|||++++.+.+.+.|.....++.++++++|+||+|+|++..++.++++.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 38999999999999999999999999999999999999998898888899999999999999999988899998765567
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.+++++++|++||+.|.+.+++.+.+.++++.|+|+|++|++..+..|+++++++|+++.+++++++|+.+|.+++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-ccccCCCCCCcccccHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD 239 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d 239 (291)
++.|.+..+|+++|++...+..+++|++.++++.|+|++.+++++..+...++++....+ ++..++|.++|++..+.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 999999999999999999999999999999999999999999999987767777766655 8889999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 240 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 240 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
++++.+.+++.|+++|+.+.+.+.++.+.+.|+|++|++++++++++
T Consensus 242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=5.7e-47 Score=324.04 Aligned_cols=280 Identities=29% Similarity=0.459 Sum_probs=262.8
Q ss_pred EEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcccccc
Q 022834 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQI 84 (291)
Q Consensus 5 iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l 84 (291)
|||+|.||.+|+..|.++||+|++|||++++.+.+.+.|.....++.++++++|+||+|+|++.++++++++.+++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999999999999988888999999999999999999888999997766787788
Q ss_pred CCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeCCCC
Q 022834 85 CPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVG 164 (291)
Q Consensus 85 ~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~ 164 (291)
++++++|++|+..|.+.+++.+.+.++|+.|+++|++|++..+..|++.++++|+++.+++++++|+.+|.+++++++.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccccccccc-------ccccCCCCCCcccccHH
Q 022834 165 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-------TMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 165 ~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 237 (291)
.+..+|+++|++....+.+++|++.++++.|++++.+++++..+.+.++++..+.+ .+..++|.++|++..+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999988888877665543 23668999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
||++++.+++++.|+++|+.+.+.++++.+.++|+|++|++++++++
T Consensus 241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999876
No 6
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.4e-46 Score=322.15 Aligned_cols=287 Identities=31% Similarity=0.555 Sum_probs=270.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||..++..|++.|++|++|||++++.+.+.+.|....++++++++++|+||+|+|++.+++.+++..+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999999999998888888888899999999999999999989999988655557
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEee
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL 160 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~ 160 (291)
.+.++++++++|+|+..|.+.+++.+.+.+.++.|+++|++|++..+..+.+.++++|+++.++.++++|+.+|.+++++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 77778899999999999999999999998889999999999999988899988999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH
Q 022834 161 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 240 (291)
Q Consensus 161 ~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 240 (291)
++.|.+..+|+++|.+...++++++|++.++++.|++++++.+.+..+.+.+++++.+.+++..++|.++|+++.+.||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889998888889899999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhh
Q 022834 241 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 287 (291)
Q Consensus 241 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 287 (291)
+++.+++++.|+++|+++++.+.++.+.+.|+|++|++++++++++.
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999764
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=3.3e-46 Score=320.22 Aligned_cols=287 Identities=31% Similarity=0.543 Sum_probs=269.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
||+|||+|.||..|+..|+++||+|++|||++++.+.+.+.|.....+..++++++|+||+|+|++.+++.+++..+++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999988888888898999999999999999888999886554566
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceEeeC
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+.++++++++++|+..|.+.+++.+.+.+.++.|+++|++|++.....+.+.++++|+++.+++++++|+.++.++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 67778999999999999999999999988899999999999998888898889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHH
Q 022834 162 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 241 (291)
Q Consensus 162 ~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 241 (291)
+.+.+..+|+++|++....+.+++|++.++++.|++++++.+++..+...+++++.+.+++..++|.++|++..+.||+.
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888899988888999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 242 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 242 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
++.+++++.|+++|+.+++.++++.+.++|+|++|++++++++++.+
T Consensus 241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~ 287 (291)
T TIGR01505 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLA 287 (291)
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999997643
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.9e-45 Score=364.12 Aligned_cols=286 Identities=23% Similarity=0.364 Sum_probs=275.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.||||||+|.||..|+.+|.++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.++++++++.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999887788
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC--CcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG--GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~ 158 (291)
.+.+++++++||+||..|.+.+++.+.+.++| +.|+|+|++|++..+..|++++++||+++.+++++++|+.+|.+++
T Consensus 85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 88888999999999999999999999999998 8899999999999999999999999999999999999999999887
Q ss_pred e-eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHH
Q 022834 159 F-LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 159 ~-~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (291)
+ +|+.|.+..+|+++|++...++++++|++.++++.|++++.++++++.+++.||+++++.+++..++|.++|++..+.
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~ 244 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence 6 488999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
||++++.++|++.|+++|+.+.+.+.++.+.+.|+|++|++++++.+++
T Consensus 245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=9.8e-44 Score=352.06 Aligned_cols=286 Identities=27% Similarity=0.465 Sum_probs=272.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||.+|+.+|.++||+|++|||++++.+.+.+.|.....++.+++++||+||+|||++.++++++++..++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~ 404 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGA 404 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhH
Confidence 48999999999999999999999999999999999999999898888899999999999999999999999999876677
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHh--cCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 158 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~ 158 (291)
.+.+.+++++|++||..|.+.+++.+.+.+ +|+.|+++|++|++..+..|+++++++|+++.+++++++|+.+|.+++
T Consensus 405 ~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 405 VSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence 777889999999999999999999999988 899999999999999999999999999999999999999999999887
Q ss_pred ee-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHH
Q 022834 159 FL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 237 (291)
Q Consensus 159 ~~-~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (291)
++ ++.|.+..+|+++|++...++++++|++.++++.|++++.++++++.+.+.||+++++.++++.++|.++|++..+.
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~ 564 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFV 564 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHH
Confidence 74 66999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 238 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 238 ~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
||++++.+.+++.|+++|+.+++.+++..+.+.|+|+.|++++++++++
T Consensus 565 KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 565 KDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=3.3e-42 Score=295.88 Aligned_cols=279 Identities=22% Similarity=0.294 Sum_probs=254.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh---CCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..|+.+|.++|++|++|||++++.+.+.+.|.....++++++++ +|+||+|+|++.++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 89999999999999999999999999999999999999988898888899998876 699999999987899998
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.+++++++||+|++.|.+..++.+.+.+.++.|+|+|++|++..+..|. +++++|+++.+++++++|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 677788888999999999999999999999989999999999999999999997 68999999999999999999997
Q ss_pred -ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCCcccccccccccccCCCCCCc
Q 022834 156 -KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 156 -~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
+++++++.|.+..+|+++|++....+.+++|++.++++.| +|++.++++++.+ ...|++++...+.+.++++ .+
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~ 234 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA 234 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence 7899999999999999999999999999999999999999 9999999999964 4778888887777765443 24
Q ss_pred ccccHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 232 PLKHQQKDM---RLALALGDENAVSMPIAAAAN-EAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 232 ~~~~~~~d~---~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
.+..+.||+ +++++.+++.|+|+|++.++. .++....++|.|..|.+++.++|-
T Consensus 235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 578899998 799999999999999999985 777878888888999999998873
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=3.5e-41 Score=302.20 Aligned_cols=263 Identities=22% Similarity=0.315 Sum_probs=239.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----CCc---ccCCHHHHHhh---CCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIKK---CTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---~dvvii~vp~~~~~ 70 (291)
++|||||+|.||..|+.+|+++||+|++|||++++.+.+.+. |.. .+.+++|+++. +|+||+|||++..+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 489999999999999999999999999999999999988763 543 67799998876 99999999999999
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHH
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISAL 150 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll 150 (291)
++|+ +++.+.+.+|+++||+||..|.+.+++.+.+.++|+.|+++|++|++..+..|+ ++++||+++.+++++++|
T Consensus 87 ~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL 162 (493)
T PLN02350 87 DQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDIL 162 (493)
T ss_pred HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHH
Confidence 9999 788888889999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred HHhcc------ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCccccccccc
Q 022834 151 NVIGK------KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDV---LDLGGIANPMFKGKGP 220 (291)
Q Consensus 151 ~~~g~------~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~---~~~~~~~s~~~~~~~~ 220 (291)
+.++. .++++|+.|++..+|+++|.+...++++++|++.++++ .|++++++.++ ++.+...|++++...+
T Consensus 163 ~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~ 242 (493)
T PLN02350 163 EKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITAD 242 (493)
T ss_pred HHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 99995 48999999999999999999999999999999999999 59999999998 4577788889888888
Q ss_pred ccccCC-CCCCcccccHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHH
Q 022834 221 TMLQSN-YAPAFPLKHQQKDMR------LALALGDENAVSMPI-AAAANEAFKKA 267 (291)
Q Consensus 221 ~~~~~~-~~~~~~~~~~~~d~~------~~~~~a~~~g~~~p~-~~~~~~~~~~~ 267 (291)
.+...+ +.++|.++.+.||++ +..+.+.+.|+|+|+ .+++.+.+...
T Consensus 243 ~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~ 297 (493)
T PLN02350 243 IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSG 297 (493)
T ss_pred HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence 777664 887899999999999 899999999999999 77766666543
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=8.2e-40 Score=281.42 Aligned_cols=278 Identities=23% Similarity=0.322 Sum_probs=247.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhh---CCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..++.+|.++||+|++|||++++.+.+.+.|+...++++++++. +|+||+|+|++..+++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 89999999999999999999999999999999999999988899998899998875 699999999877889888
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.+++++++|++|++.|....++.+.+.+.|+.|+|+|++|++..+..|. +++++|+++.+++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 677778888999999999999999999999999999999999999999999885 78999999999999999999998
Q ss_pred --ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CCcccccccccccccCCCCCC
Q 022834 156 --KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK--SGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPA 230 (291)
Q Consensus 156 --~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~--~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 230 (291)
+++++|+.|.+..+|+++|.+....+..++|++.++++ .|+|++.++++++.+. ..|++++...+.+.+ ++ .
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~~--~ 233 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-DP--K 233 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-CC--C
Confidence 78999999999999999999999999999999999999 9999999999999764 577888877666633 32 2
Q ss_pred cc-cccHHHH---HHHHHHHHhhcCCCchHHHH-HHHHHHHHHHCCCCCCcHHHHHHHHH
Q 022834 231 FP-LKHQQKD---MRLALALGDENAVSMPIAAA-ANEAFKKARSLGLGDNDFSAVFEVVK 285 (291)
Q Consensus 231 ~~-~~~~~~d---~~~~~~~a~~~g~~~p~~~~-~~~~~~~~~~~g~~~~d~~~~~~~~~ 285 (291)
+. +..+.|| ++++...+.+.++++|.+.+ +...+....+.|.+..|.+++.++|-
T Consensus 234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 22 2234555 58899999999999999999 44457778888999999999999874
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=3.7e-36 Score=258.13 Aligned_cols=278 Identities=19% Similarity=0.237 Sum_probs=235.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH---hhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI---KKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||..|+.+|.++||+|.+|||++++++.+.+.|.....++.++. .++|+||+|+|.+ .+++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 899999999999999999999999999999999999999988877777877755 3579999999887 899999
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.++++++|||+|++.|....+..+.+.+.|++|+++|++|++..+..| ..++++|+++.++.++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 78888888999999999999999999988888899999999999999999988 578999999999999999999986
Q ss_pred -ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCcccccccccccccCCCCCCc
Q 022834 156 -KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS--GLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 156 -~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~--g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
.++++++.|.+..+|+++|.+....+..++|++.++++. |++++++.++++.+. ..|++++...+.+.+.+..+.+
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~ 235 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF 235 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence 578999999999999999999999999999999999998 569999999999875 5888888776666555544443
Q ss_pred ccc-cHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 232 PLK-HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 232 ~~~-~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
... ...+|.+.++..+.+.|+|+|.+.+ .++.+.... ..+.-...+++.+++
T Consensus 236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~--al~~~~~~~-~~~~~~~~~~~~~r~ 288 (298)
T TIGR00872 236 SGRVSDSGEGRWTVIAAIDLGVPAPVIAT--SLQSRFASR-DLDDFANKVLAALRK 288 (298)
T ss_pred HHHHHhhccHHHHHHHHHHhCCCHHHHHH--HHHHHHHhC-CCCCcHHHHHHHHHH
Confidence 322 2566678999999999999999998 344444433 122233446666554
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-35 Score=263.66 Aligned_cols=254 Identities=22% Similarity=0.308 Sum_probs=219.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHh---hCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIK---KCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~~dvvii~vp~~~~~~ 71 (291)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+. | +..+.+++++++ ++|+||+++|.+..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999999888764 4 346778999886 4899999999999999
Q ss_pred HHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHH
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALN 151 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~ 151 (291)
+++ +++.+.+.++++|||++|+.+....+..+.+.++|+.|+++|++|++..+..|+ .+++||+++.+++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred Hhccc------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hcCCCcccccccccc
Q 022834 152 VIGKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVLD---LGGIANPMFKGKGPT 221 (291)
Q Consensus 152 ~~g~~------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~~---~~~~~s~~~~~~~~~ 221 (291)
.++.+ +.++|+.|++..+|+++|.+...++++++|++.+++ +.|++++++.+++. .+...|++++.....
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 99987 789999999999999999999999999999999998 79999999998884 666778888766555
Q ss_pred cccCCCCC-CcccccHHHH-------HHHHHHHHhhcCCCchHHHH
Q 022834 222 MLQSNYAP-AFPLKHQQKD-------MRLALALGDENAVSMPIAAA 259 (291)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~d-------~~~~~~~a~~~g~~~p~~~~ 259 (291)
+...+... ++-++ ...| -+...+.|-+.|+|.|++..
T Consensus 238 ~~~~d~~~~~~~l~-~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~ 282 (470)
T PTZ00142 238 LAKKDDLGEEHLVD-KILDIAGSKGTGKWTVQEALERGIPVPTMAA 282 (470)
T ss_pred hhcccccCCCcchh-hhcCcccCCchHHhHHHHHHHcCCCchHHHH
Confidence 54443221 11111 1111 25778889999999999766
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=3.2e-34 Score=257.41 Aligned_cols=253 Identities=21% Similarity=0.308 Sum_probs=217.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHHh---hCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~---~~dvvii~vp~~~~~~~v 73 (291)
+|||||+|.||.+|+.+|+++||+|++|||++++.+.+.+. ++....++.++++ .+|+||+|+|.+..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 58999999999999999999999999999999999998865 2556678888764 589999999998999999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHh
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
+ +++.+.+.++++|||+||+.+....+..+.+.++|+.|+++|++|++..+..|. .+++||+++.+++++++|+.+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI 156 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence 9 788888989999999999998888888888888999999999999999999998 789999999999999999999
Q ss_pred ccc------eEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCcccccccccccc
Q 022834 154 GKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTML 223 (291)
Q Consensus 154 g~~------~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~ 223 (291)
+.+ +.++|+.|++..+|+++|.+...++++++|++.+++ +.|++++++.+++ +.+...|++++...+.+.
T Consensus 157 a~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 157 AAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 977 478999999999999999999999999999999985 7999999999999 566778888887776665
Q ss_pred cCCCCCCcccccHHH-------HHHHHHHHHhhcCCCchHHHH
Q 022834 224 QSNYAPAFPLKHQQK-------DMRLALALGDENAVSMPIAAA 259 (291)
Q Consensus 224 ~~~~~~~~~~~~~~~-------d~~~~~~~a~~~g~~~p~~~~ 259 (291)
..+...+ ++-.... .-++.+..|-+.|+|.|++.+
T Consensus 237 ~~d~~~~-~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~ 278 (467)
T TIGR00873 237 KKDEDGK-PLVDKILDTAGQKGTGKWTAISALDLGVPVTLITE 278 (467)
T ss_pred ccCCCCC-ccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHH
Confidence 5443211 1111111 136788889999999999776
No 16
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=1.2e-33 Score=253.00 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=211.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------------------CC-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..++..|+++||+|++||+++++.+.+.+ .| ++.+++..++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 89999999999999999999999999999999999887764 13 45566778888999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCc-EEEcccCCChHhhc
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH-FLEAPVSGSKQPAE 128 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 128 (291)
|+|||++. .+..++ +++.+.++++++|++.||..|.+.+++...+.++ |.. +.+.++.++|....
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 99999874 366676 6777788889999999999999998887555443 332 34556566666666
Q ss_pred ccce--------EEEecCCHHHHHHHHHHHHHhc-cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022834 129 TGQL--------VILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR 199 (291)
Q Consensus 129 ~g~~--------~~~~~g~~~~~~~~~~ll~~~g-~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~ 199 (291)
.|.. .+++|++++..+.++++++.++ ..++++++++.++..|++.|++.+..+++++|+..+|++.|+|++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 6654 6788889999999999999998 578888899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcccccccccccccCCCCCCc--ccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 200 TLLDVLDLGGIANPMFKGKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 200 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
++.++++.+ +++....+.||+ ...++.||+.++.+.+++.|+++|+++++.+..+...
T Consensus 238 ~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~ 297 (411)
T TIGR03026 238 EVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQP 297 (411)
T ss_pred HHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhH
Confidence 999998864 233445566664 5667999999999999999999999999887776543
No 17
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=3.2e-33 Score=249.80 Aligned_cols=245 Identities=24% Similarity=0.328 Sum_probs=218.9
Q ss_pred hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHHhh---CCEEEEecCCHHHHHHHHhccCcccc
Q 022834 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDKGGVLE 82 (291)
Q Consensus 11 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---~dvvii~vp~~~~~~~v~~~~~~l~~ 82 (291)
||..|+.+|+++||+|.+|||++++.+.+.+. |+..+.+++++++. +|+||+|||.+..+++++ +++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999999874 47888999998875 899999999999999999 78899
Q ss_pred ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccce-----
Q 022834 83 QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA----- 157 (291)
Q Consensus 83 ~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~----- 157 (291)
.+.+|++|||+||..+.+.++..+.+.++|+.|+++|++|++..+..|. .+++||+++.+++++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 7899999999999999999999876
Q ss_pred --EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCcccccccccccccCCCCCCc
Q 022834 158 --FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 158 --~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
.++|+.|++..+|+++|.+...++++++|++.+++ +.|++++++.+++ +.+...|++++...+.+..+++..+.
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 89999999999999999999999999999999999 5899999999998 46778889998888888887874443
Q ss_pred ccccHHHH-------HHHHHHHHhhcCCCchHHHH
Q 022834 232 PLKHQQKD-------MRLALALGDENAVSMPIAAA 259 (291)
Q Consensus 232 ~~~~~~~d-------~~~~~~~a~~~g~~~p~~~~ 259 (291)
++-....| -......|-+.|+|+|++..
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 32222222 26778889999999999765
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=100.00 E-value=1.5e-32 Score=215.40 Aligned_cols=161 Identities=37% Similarity=0.672 Sum_probs=144.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||||||+|.||..|+++|.++||+|++|||++++.+.+.+.|+..++++.|+++++|+||+|+|++.++++++++.+ +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-I 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-H
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-H
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999996655 8
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhccceE-e
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF-F 159 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~-~ 159 (291)
.+.+.+++++||+||..|.+.+++.+.+.++|+.|+|+|++|++..+..|+++++++|+++.+++++++|+.++.+++ +
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceee
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999888 4
Q ss_pred eCC
Q 022834 160 LGE 162 (291)
Q Consensus 160 ~~~ 162 (291)
+|+
T Consensus 161 ~G~ 163 (163)
T PF03446_consen 161 VGP 163 (163)
T ss_dssp -ES
T ss_pred eCc
Confidence 453
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=8e-31 Score=206.88 Aligned_cols=276 Identities=23% Similarity=0.340 Sum_probs=223.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh---hCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK---KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|++||+|+||..++.+|.+.||+|+.||+|++..+.++..|++..+|+++++. ...+|++.||..+.+..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 8999999999999999999999999999999999999999999999999888764 4789999999988899999
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc--
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK-- 155 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~-- 155 (291)
+++.+.+.++++|||-.|+...+..+..+.+.+++++|+|+..+|+...+..|- .++++|+++.++.+.++|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCc
Confidence 899999999999999999998888888888999999999999999999988885 48999999999999999999875
Q ss_pred -ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC-CCcccccccccccccCCCCCCc
Q 022834 156 -KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAF 231 (291)
Q Consensus 156 -~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g--~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 231 (291)
-+.++++.|++..+|+++|.+...+++.++|.+.++++.. +|.+.+.++.+.++ ..||.++...+.+ +.+..-..
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af-~~d~~L~q 235 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAF-KKDPDLDQ 235 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHH-hhCCCHHH
Confidence 3678999999999999999999999999999999999855 56788999999875 4666665432211 11110000
Q ss_pred ccccHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHH-HHHHHHh
Q 022834 232 PLKHQQKD---MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSA-VFEVVKD 286 (291)
Q Consensus 232 ~~~~~~~d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~-~~~~~~~ 286 (291)
+.....| -++.++.+-+.|+|.|++.. .++.+..+++ +..++- ++.++++
T Consensus 236 -~~g~v~dSGEGrWTv~~aldlgvpaPVia~--al~~Rf~S~~--~d~f~~kvlaalR~ 289 (300)
T COG1023 236 -ISGRVSDSGEGRWTVEEALDLGVPAPVIAL--ALMMRFRSRQ--DDTFAGKVLAALRN 289 (300)
T ss_pred -hcCeeccCCCceeehHHHHhcCCCchHHHH--HHHHHHhccc--hhhHHHHHHHHHHH
Confidence 0000011 14567778899999999877 5666766652 233332 4445544
No 20
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=6.5e-31 Score=229.18 Aligned_cols=271 Identities=16% Similarity=0.211 Sum_probs=214.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------C------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------G------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||.+++..|+++||+|++|+|++++.+.+... | +...+++.++++++|+||+|+|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 799999999999999999999999999999999988887754 3 33456788888899999999966
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCC-CHHH--HHHHHHHHHh---cCCcEEEcccCCChHhhcccceEEEecCCH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHET--SIKISRAITS---KGGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 140 (291)
.++++++ +. ++++.++++++++ .+.. .+.+.+.+.+ .++.++..|..........+...++.+++.
T Consensus 85 -~~~~~v~---~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~ 156 (328)
T PRK14618 85 -KALRETL---AG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEP 156 (328)
T ss_pred -HHHHHHH---Hh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCH
Confidence 4677777 33 3466789999986 4433 5566666655 566667777544444444466677888899
Q ss_pred HHHHHHHHHHHHhccceEeeCC-----------------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 141 ALYDEAISALNVIGKKAFFLGE-----------------VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~-----------------~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
+.+++++++|+..+.+++...+ .|.+..+|+..|.....+...+.|+..++++.|++++++++
T Consensus 157 ~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~ 236 (328)
T PRK14618 157 GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYG 236 (328)
T ss_pred HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhc
Confidence 9999999999999988774333 25556677778888888999999999999999999999999
Q ss_pred HHhh----cCCCccccccc--ccccccC---C-CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCC
Q 022834 204 VLDL----GGIANPMFKGK--GPTMLQS---N-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG 273 (291)
Q Consensus 204 ~~~~----~~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~ 273 (291)
++.. .++.|+..+++ ++++.++ + +.+++.+..+.||++++.+.+++.++++|+++++++++. +
T Consensus 237 ~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~~-------~ 309 (328)
T PRK14618 237 LSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVAR-------G 309 (328)
T ss_pred CcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-------C
Confidence 9876 36677888877 3467776 4 567788889999999999999999999999999988873 5
Q ss_pred CCcHHHHHHHHHh
Q 022834 274 DNDFSAVFEVVKD 286 (291)
Q Consensus 274 ~~d~~~~~~~~~~ 286 (291)
+.+..++++.+-+
T Consensus 310 ~~~~~~~~~~~~~ 322 (328)
T PRK14618 310 GWDPLAGLRSLMG 322 (328)
T ss_pred CCCHHHHHHHHhc
Confidence 5577777776644
No 21
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.97 E-value=2e-29 Score=224.89 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=195.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc----------------ccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----------------VGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~~dvvii~v 64 (291)
|||+|||+|.||..+|..|++ ||+|++||+++++.+.++ .|.. ..++..+.+++||++|+||
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 899999999999999999887 699999999999999988 3432 2334445688999999999
Q ss_pred CCH------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEEE------cc--cCCChHhhc
Q 022834 65 ADP------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE------AP--VSGSKQPAE 128 (291)
Q Consensus 65 p~~------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~~------~~--~~~~~~~~~ 128 (291)
|++ .+++.+++..+++.+.++++++||+.||..|.+.+++.....+. |..+.+ +| +.++.....
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 988 33455554447888889899999999999999998764433332 443322 23 334443333
Q ss_pred ccceE-EEecCCHHHHHHHHHHHHHhc-cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 129 TGQLV-ILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 129 ~g~~~-~~~~g~~~~~~~~~~ll~~~g-~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
...+. ++.|.+++..+.+.++++.+. ..++++++.+.|+..|+++|++.++.+++++|+..+|++.|+|.+++++.+.
T Consensus 165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAG 244 (425)
T ss_pred ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 33333 345557778889999999986 3467788899999999999999999999999999999999999999999865
Q ss_pred hcCCCcccccccccccccCCCCCC-cccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 207 LGGIANPMFKGKGPTMLQSNYAPA-FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 207 ~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.. +.+ ..+.|| +...+..||..++...+++.|+++++++++.+..+..
T Consensus 245 ~~----~~~---------~~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 245 SK----WNF---------LPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred CC----CCc---------ccCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 43 221 123455 6677789999999999999999999999988776543
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.97 E-value=1.3e-28 Score=219.82 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=198.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-CCHHHH---------------HhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEV---------------IKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~---------------~~~~dvvii~v 64 (291)
|||+|||+|.||..+|..|+++||+|++||+++++++.+........ ...+++ .++||+||+||
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999999999988654322221 122222 23799999999
Q ss_pred CCH---------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC--------------cEEEcc--
Q 022834 65 ADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--------------HFLEAP-- 119 (291)
Q Consensus 65 p~~---------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~--------------~~~~~~-- 119 (291)
|++ ..+++++ +++.+.++++++||+.||..|.+.+++...+.+.+. .++.+|
T Consensus 84 ptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~ 160 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPER 160 (415)
T ss_pred CCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCc
Confidence 987 5777777 788888889999999999999999999887765422 245777
Q ss_pred cCCChHhhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 022834 120 VSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDP 198 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~ 198 (291)
+..+......+....+++| +++..++++++++.++..++++++++.|+..|++.|.+.+..+++++|+..+|++.|+|+
T Consensus 161 ~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~ 240 (415)
T PRK11064 161 VLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240 (415)
T ss_pred cCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4455555555566677788 899999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 199 RTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 199 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
+++.+.++..+..+ .. .+.+|+...+..||..++.. +.+.+.++++++.+..+..
T Consensus 241 ~~v~~~~~~~~ri~---------~l--~pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 241 WELIRLANRHPRVN---------IL--QPGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred HHHHHHhccCCCcc---------cC--CCCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 99999887654221 11 22346667778999988754 4566778888877666544
No 23
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.97 E-value=2e-29 Score=220.06 Aligned_cols=273 Identities=18% Similarity=0.224 Sum_probs=203.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||..++..|+++||+|++|+|++++.+.+.+.+ .....++++.++++|+||+|||.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 6999999999999999999999999999999999988887752 44566777788899999999965
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhc-----CCcEEEcccCCChHhhcccceEEEecCCH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 140 (291)
.++++++ +++.+.+.+++++++++++ .+.+.+.+.+.+.+. ...++..|..............++.+++.
T Consensus 82 -~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 -QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred -HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 6889998 7788888788999999844 443343444444332 23345666443333333344555666788
Q ss_pred HHHHHHHHHHHHhccceEeeCCCC-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 141 ALYDEAISALNVIGKKAFFLGEVG-----------------NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~~~-----------------~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
+.++++.++|+..+.++.+..++- .+...|+..|.....+...+.|++.++++.|++++.+++
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 999999999999998877766643 334467777888888899999999999999999999988
Q ss_pred HHhhc----CCCcccccccc--cccccCC-C-----CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 204 VLDLG----GIANPMFKGKG--PTMLQSN-Y-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 204 ~~~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
+...+ ...++..+++. ..+..+. + .++ ....+.||++++++.++++|+++|+++++++++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~------- 309 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL------- 309 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 76544 33444444433 2232222 1 113 466789999999999999999999999999887
Q ss_pred CCCCcHHHHHHHHH
Q 022834 272 LGDNDFSAVFEVVK 285 (291)
Q Consensus 272 ~~~~d~~~~~~~~~ 285 (291)
..+.+...+++.+.
T Consensus 310 ~~~~~~~~~~~~~~ 323 (325)
T PRK00094 310 YEGKDPREAVEDLM 323 (325)
T ss_pred cCCCCHHHHHHHHh
Confidence 35667777766654
No 24
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.97 E-value=1.2e-28 Score=217.54 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=194.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH----------------CCCcc--cCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----------------HGATV--GGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.||..+|..|+. ||+|++||+++++++.+.+ .+.+. ..+..+++.++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 899999999999999988875 9999999999999988876 22333 2346677889999999
Q ss_pred ecCCH----------HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccce
Q 022834 63 MLADP----------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL 132 (291)
Q Consensus 63 ~vp~~----------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (291)
|||++ ..+++++ +++.+ ++++++||+.||..|.+.+++...+.+.++.| . |.....|+.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~-----PE~l~~G~a 148 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--S-----PEFLREGKA 148 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--C-----cccccCCcc
Confidence 99977 5777887 66766 57899999999999999999998876654333 3 345555655
Q ss_pred --------EEEecCCHHHHHHHHHHHHH--hccceE-eeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 133 --------VILSAGEKALYDEAISALNV--IGKKAF-FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 133 --------~~~~~g~~~~~~~~~~ll~~--~g~~~~-~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
.+++|++++..+++.+++.. ++..+. ++++.+.|+..|++.|.+.+..+++++|+..+|++.|+|.+++
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV 228 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQI 228 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 67888888888888888855 454444 6788999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 202 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 202 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.+.++.....++.+ + .+.+|+...+..||..++...+ .++++++++++.+..+..
T Consensus 229 ~~a~~~d~ri~~~~-------l--~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 229 IEGVCLDPRIGNHY-------N--NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR 283 (388)
T ss_pred HHHhcCCCCCCCcc-------C--CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence 99998764332211 1 1345677788999999887665 457788988877766554
No 25
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.95 E-value=1.1e-26 Score=200.51 Aligned_cols=267 Identities=14% Similarity=0.142 Sum_probs=207.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 56 (291)
|||+|||+|.||.+|+..|+++||+|++||++++..+.. .+.| +....+..+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 689999999999999999999999999999998876653 2334 2566788888889
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
+|+|++|+|.+.+++..++ +.+.... ++.+++. |+..+....++.+.+...+..+.++|+.+... .+++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~-~~~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALA-PPHAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhC-CCcceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence 9999999998776666665 4455555 4444444 44434455667776655566677999865321 1345577
Q ss_pred c---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcc
Q 022834 137 A---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP 213 (291)
Q Consensus 137 ~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~ 213 (291)
+ ++++.++.+.++++.+|++++++++.+.+. +++++ ..+++.|++.++++.|++++++.++++.+.+.+|
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~ 227 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRW 227 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCc
Confidence 5 689999999999999999999998656664 33332 4589999999999999999999999998888777
Q ss_pred cccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 214 MFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
.+ .+|.++...+.+++....+.+|..+..+.+++.+.+.|+++-..+.+-...+.-.+..++..+.++=
T Consensus 228 ~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (308)
T PRK06129 228 SF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAWR 296 (308)
T ss_pred cC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66 5676666777788888889999999999999999999999988887777777667777777776653
No 26
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=3.4e-27 Score=203.77 Aligned_cols=254 Identities=17% Similarity=0.248 Sum_probs=188.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|||+|||+|.||.+++..|+++||+|++|+|++. .++.++++++|+||+|+|. ..+++++ +++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l 67 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQV 67 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHH
Confidence 8999999999999999999999999999999753 4677888899999999987 5789988 667
Q ss_pred ccc-cCCCcEEEEcCC-CCHHHHHHHHHHHHhcCCcEEEccc---CCChH----hhcccceEEEecCCHHHHHHHHHHHH
Q 022834 81 LEQ-ICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPV---SGSKQ----PAETGQLVILSAGEKALYDEAISALN 151 (291)
Q Consensus 81 ~~~-l~~~~~vv~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~g~~~~~~~g~~~~~~~~~~ll~ 151 (291)
.+. ++++++++++++ ..|.+...+.+.+... +.+.|+ .|+.. ....+..+++++++.+..+.++++|+
T Consensus 68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~ 144 (308)
T PRK14619 68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFS 144 (308)
T ss_pred HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhC
Confidence 653 667889999887 3444444444434322 233343 22222 22334666788889999999999999
Q ss_pred HhccceEeeCC-CC--hhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccc
Q 022834 152 VIGKKAFFLGE-VG--NGAKM--------------KLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPM 214 (291)
Q Consensus 152 ~~g~~~~~~~~-~~--~a~~~--------------k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~ 214 (291)
..+.++++.++ .| .+..+ |+..|.....+..++.|+..++++.|++++.++++. +.+.++.
T Consensus 145 ~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~~ 222 (308)
T PRK14619 145 SERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLLA 222 (308)
T ss_pred CCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhhe
Confidence 99988887777 33 22333 377788888899999999999999999999998853 2222222
Q ss_pred ccccccccccCCCCCCcccccH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHH
Q 022834 215 FKGKGPTMLQSNYAPAFPLKHQ----------------QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFS 278 (291)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~----------------~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~ 278 (291)
....+..+++.+|+.+..+ .+|++.+++++++.|+++|+.+++++++. +..+..
T Consensus 223 ---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~ 292 (308)
T PRK14619 223 ---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQ 292 (308)
T ss_pred ---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHH
Confidence 1234455666666555555 89999999999999999999999998884 455666
Q ss_pred HHHHHHHh
Q 022834 279 AVFEVVKD 286 (291)
Q Consensus 279 ~~~~~~~~ 286 (291)
++++.+-+
T Consensus 293 ~~~~~l~~ 300 (308)
T PRK14619 293 QALEELME 300 (308)
T ss_pred HHHHHHHc
Confidence 66666644
No 27
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.7e-25 Score=190.44 Aligned_cols=256 Identities=16% Similarity=0.108 Sum_probs=200.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-------------------C-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||.|.+|...+.+|++.||+|+.+|.++++.+.++.. | ...+++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 999999999999999999999999999999999999887652 1 45678888899999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC----CcEEEcccCCC---h
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGS---K 124 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~ 124 (291)
|+|||+|+ .++.+. +.+.+.+++.++||.-||+.+++.+++.+.+.+.. +.++..|-|-. .
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99998774 467777 78888887779999999999999999988776653 23445553211 1
Q ss_pred HhhcccceEEEecCCH-HHHHHHHHHHHHh--ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 125 QPAETGQLVILSAGEK-ALYDEAISALNVI--GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 125 ~~~~~g~~~~~~~g~~-~~~~~~~~ll~~~--g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
......+-.+++|..+ .+.+.+++++..+ ...++..-+...|++.|+..|.+.++-+.+++|...+|++.|+|.+++
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V 237 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV 237 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 1111222335666644 3577788888665 233444445799999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 202 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 202 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
.+.++...--++.+ + +...|+...+..||+..+++.++++|.+.++++++.+..++..
T Consensus 238 ~~gIGlD~RIG~~f-------l--~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk 295 (414)
T COG1004 238 AEGIGLDPRIGNHF-------L--NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRK 295 (414)
T ss_pred HHHcCCCchhhHhh-------C--CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99888653222221 1 2344677888999999999999999999999999888776543
No 28
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.94 E-value=7e-26 Score=198.89 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=183.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----------------cCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------------GGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~~dvvii~ 63 (291)
|||+|||+|.||..++..|+++||+|++|+|++ +.+.+.+.|..+ .++. +.+.++|+||+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 799999999999999999999999999999964 446666655432 2333 456789999999
Q ss_pred cCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc--c---cCCChHhhc---ccceEEE
Q 022834 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA--P---VSGSKQPAE---TGQLVIL 135 (291)
Q Consensus 64 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~---~g~~~~~ 135 (291)
||. .++.+++ +.+.+.++++++|++++++.. ..+.+.+.+.+. .++.+ + +..++.... .|++ .
T Consensus 81 vk~-~~~~~~~---~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l--~ 151 (341)
T PRK08229 81 VKS-AATADAA---AALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGAL--A 151 (341)
T ss_pred ecC-cchHHHH---HHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCce--E
Confidence 965 5678888 778888888899888877643 335566555432 23332 1 121222211 3332 2
Q ss_pred ecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 022834 136 SAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM--------------------MNTFSEGLVLAEKSG 195 (291)
Q Consensus 136 ~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~--------------------~~~~~E~~~~~~~~g 195 (291)
++ +.+.++++.++|+..+.++.+.++++...|.|++.|++.... ..++.|++.++++.|
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G 230 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG 230 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence 32 335578999999999999999999999999999999742222 377899999999999
Q ss_pred CCHHHHHHHHhhc-----CCCcccccccccccccCCCCCCcccccHHHHHH------------HHHHHHhhcCCCchHHH
Q 022834 196 LDPRTLLDVLDLG-----GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR------------LALALGDENAVSMPIAA 258 (291)
Q Consensus 196 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~------------~~~~~a~~~g~~~p~~~ 258 (291)
++++.+.++.... ...++.++...+.+...++. ...+|.+|+. ++++.|+++|+++|.++
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~ 307 (341)
T PRK08229 231 IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL---ARSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNA 307 (341)
T ss_pred CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc---cCchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHH
Confidence 9987554433322 12233333333333333332 2456999987 79999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC
Q 022834 259 AANEAFKKARSLGLGDN 275 (291)
Q Consensus 259 ~~~~~~~~~~~~g~~~~ 275 (291)
.++++++...+.|..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~ 324 (341)
T PRK08229 308 RLCALVHEAERAGARPA 324 (341)
T ss_pred HHHHHHHHHHhCCCcCC
Confidence 99999999888765444
No 29
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.3e-25 Score=185.00 Aligned_cols=255 Identities=22% Similarity=0.340 Sum_probs=206.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcccCCHHHHH---hhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVI---KKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~~dvvii~vp~~~~~~~ 72 (291)
+.||+||+|-||..|+.++.++||+|.+|+|+.++.+.+.++ .+..+.+++|.+ +.+..|++.|.....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 369999999999999999999999999999999999988764 345567888765 457889999966567888
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
++ +++.+++.+++++||-.|....+..+..+.+.+.|+.|+.+.++|+...+..|+. +|.||++++.+.+.++|.+
T Consensus 84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTK 159 (473)
T ss_pred HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHH
Confidence 99 8999999999999999998766667777788899999999999999999999985 8999999999999999999
Q ss_pred hcc------ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCCccccccccccc
Q 022834 153 IGK------KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDL---GGIANPMFKGKGPTM 222 (291)
Q Consensus 153 ~g~------~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~~---~~~~s~~~~~~~~~~ 222 (291)
+.. .+.++|+-|+++.+|+++|.+...-+++++|++.+.+. .|++.+++.++... +...|.+.+-...-+
T Consensus 160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 863 35788999999999999999999999999999999998 89999888877763 333433333332333
Q ss_pred ccCCCCCCcccccHHHHH-------HHHHHHHhhcCCCchHHHH
Q 022834 223 LQSNYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA 259 (291)
Q Consensus 223 ~~~~~~~~~~~~~~~~d~-------~~~~~~a~~~g~~~p~~~~ 259 (291)
...|...+.++....-|. ++....|-+.|+|++++..
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~e 283 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITE 283 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHH
Confidence 333343333333333332 5677888899999988654
No 30
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.93 E-value=6.3e-24 Score=191.10 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=194.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHCC-------------------CcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~~dv 59 (291)
|||+|||+|.+|..+|..|+++| |+|+++|+++++++.++..+ ...+++..+.++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 89999999999999999999884 78999999999998876432 3345566777889999
Q ss_pred EEEecCCHH--------------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--C--CcEEEcccC
Q 022834 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--G--GHFLEAPVS 121 (291)
Q Consensus 60 vii~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~--~~~~~~~~~ 121 (291)
+|+|||+|. .+++++ +.+.+.++++++||.-||..|.+.+.+...+.+. | +.+..+|.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCc
Confidence 999997654 567777 7888889899999999999999999998877763 3 334467743
Q ss_pred CC---hHhhcccceEEEecCC-----HHHHHHHHHHHHHhcc-ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 122 GS---KQPAETGQLVILSAGE-----KALYDEAISALNVIGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE 192 (291)
Q Consensus 122 ~~---~~~~~~g~~~~~~~g~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~ 192 (291)
-. ..........+++|+. .+..+.+.++++.+-. .++...++..|++.|++.|.+.++.+++++|...+|+
T Consensus 159 l~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce 238 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (473)
T ss_pred cCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222233455663 3357788889888853 4566677899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 022834 193 KSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFK 265 (291)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~--~p~~~~~~~~~~ 265 (291)
+.|+|..++.+.++.....++. .. ...+|+...+..||..++...+++.|.+ +++++++.+..+
T Consensus 239 ~~giD~~eV~~~~~~d~rig~~-------~l--~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~ 304 (473)
T PLN02353 239 ATGADVSQVSHAVGKDSRIGPK-------FL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMND 304 (473)
T ss_pred HhCCCHHHHHHHhCCCCcCCCC-------CC--CCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 9999999999988866422111 11 2334666778999999999999999988 777777664443
No 31
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.92 E-value=9.2e-24 Score=177.72 Aligned_cols=276 Identities=16% Similarity=0.204 Sum_probs=205.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------CCcccCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|+||++||..|+++||+|++|.|+++..+.+.+. ++..+++..++++++|+|++++|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 799999999999999999999999999999999999888763 245577899999999999999976
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecCCHH
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAGEKA 141 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 141 (291)
+.+++++ +++.+.++++..++.++.+. +.+.+.+.+.+.+. .+.++..|-+.........+.+.+.+.+.+
T Consensus 82 -~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 82 -QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred -HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 7899999 78877888999999999873 33444444443332 345667776665555555666667777899
Q ss_pred HHHHHHHHHHHhccceEeeCC-CChh--HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 022834 142 LYDEAISALNVIGKKAFFLGE-VGNG--AKM--------------KLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDV 204 (291)
Q Consensus 142 ~~~~~~~ll~~~g~~~~~~~~-~~~a--~~~--------------k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~ 204 (291)
..++++.+|+.--++++...| +|.. .++ .+..|.-.+.+...++|..++....|-.+++++.+
T Consensus 158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL 237 (329)
T COG0240 158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL 237 (329)
T ss_pred HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence 899999999997777777766 4422 333 34467777778899999999999999999988887
Q ss_pred Hhhc----CCCccccccc--ccccccCCCC------CCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCCC
Q 022834 205 LDLG----GIANPMFKGK--GPTMLQSNYA------PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGL 272 (291)
Q Consensus 205 ~~~~----~~~s~~~~~~--~~~~~~~~~~------~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 272 (291)
...+ ++.|+..+++ +..+.++ .+ ....+....+....+.+.++++++++|+++++++++.
T Consensus 238 sGlGDLilTCts~~SRN~r~G~~lg~g-~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~------- 309 (329)
T COG0240 238 SGLGDLILTCTSPLSRNRRFGLLLGQG-LSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY------- 309 (329)
T ss_pred ccccceeEecCCCccccHHHHHHHhCC-CCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------
Confidence 7654 4555444443 2222222 11 1122444577788999999999999999999998885
Q ss_pred CCCcHHHHHHHHHhhh
Q 022834 273 GDNDFSAVFEVVKDLK 288 (291)
Q Consensus 273 ~~~d~~~~~~~~~~~~ 288 (291)
...+...+++.+-++.
T Consensus 310 ~~~~~~~~~~~L~~r~ 325 (329)
T COG0240 310 EGLDPKEAIEELMGRD 325 (329)
T ss_pred CCCCHHHHHHHHhccc
Confidence 4456666666665444
No 32
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.1e-23 Score=178.86 Aligned_cols=205 Identities=19% Similarity=0.232 Sum_probs=161.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-------------------C-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvv 60 (291)
++|+|||+|.+|..+|..++++|++|+.+|.++.+.+.++.- | .+.+++.+++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 589999999999999999999999999999999988877542 2 3445566554 489999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCc-----EE-Ecc--cC
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH-----FL-EAP--VS 121 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~-----~~-~~~--~~ 121 (291)
++|||+|- .+++.. +.+.+.|++|++||.-||..|++.+++...+.+. |.. |+ .+| +.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~ 165 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL 165 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence 99998763 355555 7788999999999999999999999999887764 222 22 344 11
Q ss_pred CChHhhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 122 GSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 122 ~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
-++.....-...-++|| ++...+....+.+.+-...+.+.+...|++.|+..|.+..+++++++|..-+|++.|++..+
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe 245 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE 245 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 11111111122235666 66667788888888877778888899999999999999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 022834 201 LLDVLDLGG 209 (291)
Q Consensus 201 ~~~~~~~~~ 209 (291)
+.++++...
T Consensus 246 vIeaAnt~P 254 (436)
T COG0677 246 VIEAANTKP 254 (436)
T ss_pred HHHHhccCC
Confidence 999888653
No 33
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.92 E-value=1.2e-23 Score=178.52 Aligned_cols=250 Identities=15% Similarity=0.198 Sum_probs=177.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEE-cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+|+..|.++|+ +|++| +|++++.+.+.+.|+....++.++++++|+||+|+ +++++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v-~~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAV-KPQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEE-CcHHHHHHH-
Confidence 899999999999999999999998 89999 99999998888889988889999899999999999 568899999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEec--CCHHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNV 152 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~~~ll~~ 152 (291)
+++.+.+.++++||+.+++.+ .+.+.+.+... .++ .+|..+. ....+...+..+ .+++.++.++++|+.
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~~--~vvr~mP~~~~--~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 150 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGIT--LADLQEWAGGR--RVVRVMPNTPC--LVGEAASVMSLGPAATADDRDLVATLFGA 150 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCc--HHHHHHHcCCC--CEEEECCCcHH--HHhCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 677777778888887655432 23344433221 455 5663322 222222222222 378889999999999
Q ss_pred hccceEeeCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCccc-ccc--ccc-ccccCC
Q 022834 153 IGKKAFFLGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPM-FKG--KGP-TMLQSN 226 (291)
Q Consensus 153 ~g~~~~~~~~--~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~-~~~--~~~-~~~~~~ 226 (291)
+|. ++++++ .......--....+.+.++..+.|+ +.+.|++++...+++..+...++. +.. ..+ .+.+.-
T Consensus 151 ~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v 226 (266)
T PLN02688 151 VGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMV 226 (266)
T ss_pred CCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 998 777754 2222222222334455667777777 888999999999999876555543 211 122 222333
Q ss_pred CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 227 YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 227 ~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
.+|+.+. ...++..++.|++-.+.+++.+.++++.+.+
T Consensus 227 ~spgG~t-------~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 227 TSPGGTT-------IAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 3454433 3466777789999999999999999988753
No 34
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.91 E-value=1e-22 Score=185.99 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=154.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------------------CC-CcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.||..|+..|+++||+|++||+++++.+.+.+ .+ +..++++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999988765422 12 56778888899999999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCC-
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE- 139 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~- 139 (291)
++|+|++.+++..++ .++.+.++++. +|..|++.+.. ..+.+.+...+..++++|.. +...++++.+++|+
T Consensus 85 ieavpe~~~vk~~l~--~~l~~~~~~~~-iI~SsTsgi~~-s~l~~~~~~~~r~~~~hP~n----P~~~~~Lvevv~g~~ 156 (495)
T PRK07531 85 QESVPERLDLKRRVL--AEIDAAARPDA-LIGSSTSGFLP-SDLQEGMTHPERLFVAHPYN----PVYLLPLVELVGGGK 156 (495)
T ss_pred EEcCcCCHHHHHHHH--HHHHhhCCCCc-EEEEcCCCCCH-HHHHhhcCCcceEEEEecCC----CcccCceEEEcCCCC
Confidence 999999888888765 45666665555 45555554432 35566565566678899844 33455677788874
Q ss_pred --HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCCccc
Q 022834 140 --KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT-FSEGLVLAEKSGLDPRTLLDVLDLGGIANPM 214 (291)
Q Consensus 140 --~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~-~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~ 214 (291)
++.++.+.++++.+|+++++++ |.+.|++.+-+... +.|++.++++.|++++++.++++.+.+.+|.
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 7899999999999999999887 35556666666666 5999999999999999999999988666543
No 35
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.90 E-value=3e-22 Score=173.49 Aligned_cols=198 Identities=14% Similarity=0.183 Sum_probs=162.4
Q ss_pred CeEEEEecChh--------------------hHHHHHHHHhCCCcEEEEcCCcc-----hhHHHHHCCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 55 (291)
|||.|+|+|+- |..||..|+++||+|++|||+++ +.+.+.+.|+.+..+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 89999999986 89999999999999999999987 445677779888889989899
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHH-HHHHHHHHh----cCCcEE-EcccCCChHhhcc
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS-IKISRAITS----KGGHFL-EAPVSGSKQPAET 129 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~-~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~ 129 (291)
++|+||+|+|.+..+++++ +++.+.++++++|+|+|++.+... +.+.+.+.. .++.+. .+++.|. ..
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQ 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----cc
Confidence 9999999999876689998 678888888999999999999877 666666642 233333 3333333 23
Q ss_pred cceEEEecC--------CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 130 GQLVILSAG--------EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 130 g~~~~~~~g--------~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+...++.++ +++.+++++++|+.+|.++++++ .+.+..+|+++|++.+...++.+|++.++++.|.++..+
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~ 232 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEM 232 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 334445543 88889999999999999887777 599999999999999999999999999999999999876
Q ss_pred HHHHh
Q 022834 202 LDVLD 206 (291)
Q Consensus 202 ~~~~~ 206 (291)
.+-..
T Consensus 233 ~~~~~ 237 (342)
T PRK12557 233 IEKQI 237 (342)
T ss_pred HHHHH
Confidence 65443
No 36
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.90 E-value=4.8e-22 Score=169.44 Aligned_cols=249 Identities=18% Similarity=0.227 Sum_probs=170.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCcc-hhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS-KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~~-~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+|++.|.++| ++|++|+|+++ +++.+... |+....++.++++++|+||+|| +++++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav-~p~~~~~vl 82 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAM-KPKDVAEAL 82 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEe-CHHHHHHHH
Confidence 79999999999999999999988 78999999764 56777654 8877888888889999999999 567888888
Q ss_pred hccCccccccCCCcEEEEc-CCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh-hcccceEEEecCC---HHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFL-EAPVSGSKQP-AETGQLVILSAGE---KALYDEAIS 148 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~-s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~~~g~---~~~~~~~~~ 148 (291)
+++.+.++++++||++ ++..+.+.++ .+. .+..++ .+| +.. ...+..+.+++++ ++.++.+++
T Consensus 83 ---~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~-~~~~v~r~mP----n~~~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 83 ---IPFKEYIHNNQLIISLLAGVSTHSIRN---LLQ-KDVPIIRAMP----NTSAAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred ---HHHHhhcCCCCEEEEECCCCCHHHHHH---HcC-CCCeEEEECC----CHHHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 7787777788999997 5555554444 232 233344 444 222 2234445566654 668899999
Q ss_pred HHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-cccc--cccccccc
Q 022834 149 ALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PMFK--GKGPTMLQ 224 (291)
Q Consensus 149 ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s-~~~~--~~~~~~~~ 224 (291)
+|+.+|..++.-.+ +......--..+.+.+.++..+.|+ +.+.|++++...+++..+...+ .++. ...+..+.
T Consensus 152 l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~ 228 (279)
T PRK07679 152 LFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILR 228 (279)
T ss_pred HHHhCCcEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 99999986543211 1111111111122333334444444 8899999999999998753322 3333 45566666
Q ss_pred CCC-CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 225 SNY-APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 225 ~~~-~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
.++ +|++++. ..++..++.|++--+.+++.+..+++.+.+
T Consensus 229 ~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 229 KEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 777 7777554 355556678888889999998888887753
No 37
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.90 E-value=5.9e-22 Score=172.78 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=176.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--C------------cccCCHHHHH-hhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--A------------TVGGSPAEVI-KKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--~------------~~~~~~~~~~-~~~dvvii~vp 65 (291)
|||+|||+|+||++++..|+++|++|++|+|++++.+.+...+ . ....+..+.+ .++|++|+||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav- 79 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV- 79 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe-
Confidence 8999999999999999999999999999999998888777631 1 1334555665 5889999999
Q ss_pred CHHHHHHHHhccCcccc-ccCCCcEEEEcCCCCHHH-----HHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCC
Q 022834 66 DPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHET-----SIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~-~l~~~~~vv~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 139 (291)
+++++++++ +++.+ .+.+++.++.++++.... .+.+.+.++...+..+..|-+.............+.+.+
T Consensus 80 ks~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 80 PTQQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred CHHHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 668899999 78887 777777777777775221 233444443332223334421111111111122334446
Q ss_pred HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHH
Q 022834 140 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC-----------------MMNTFSEGLVLAEKSGL--DPRT 200 (291)
Q Consensus 140 ~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~-----------------~~~~~~E~~~~~~~~g~--~~~~ 200 (291)
.+..+.+.++|+..+.+++...++-...|.|++-|.+... +..++.|+..++++.|. ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 6666788888888888888888888889999998875443 35678899999999987 7788
Q ss_pred HHHHHhhc----CCCccccccc--ccccccCCC-----CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 201 LLDVLDLG----GIANPMFKGK--GPTMLQSNY-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 201 ~~~~~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
++++...+ +..+...+++ +..+.++.. ....+.-....-++.+.+.++++|+++|+++.+++++.
T Consensus 237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~---- 312 (326)
T PRK14620 237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLY---- 312 (326)
T ss_pred hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----
Confidence 85332211 1111111111 111111000 00111122344457899999999999999999998873
Q ss_pred CCCCCCcHHHHHHHH
Q 022834 270 LGLGDNDFSAVFEVV 284 (291)
Q Consensus 270 ~g~~~~d~~~~~~~~ 284 (291)
.+.+..++++.+
T Consensus 313 ---~~~~~~~~~~~~ 324 (326)
T PRK14620 313 ---ENISLEKTISVI 324 (326)
T ss_pred ---CCCCHHHHHHHH
Confidence 444555555543
No 38
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.89 E-value=6e-22 Score=171.37 Aligned_cols=252 Identities=17% Similarity=0.179 Sum_probs=168.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----------cCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------GGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+|.||+.++..|+++||+|++++|++++.+.+.+.|... .++..++ +++|+||+|+| +.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k-~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVK-AYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecc-ccc
Confidence 8999999999999999999999999999999888888887766532 3445554 78999999995 577
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC----cEEEcccCCChHhhcccceEEEecC---CHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG----HFLEAPVSGSKQPAETGQLVILSAG---EKAL 142 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~ 142 (291)
+++++ +.+.+.+.+++.|+.++++.. ..+.+.+.+....+ .+..+...++......+...+.++. ..+.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 88888 788888877888888888742 22344444433211 1222222222222222222233332 2244
Q ss_pred HHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCH--H
Q 022834 143 YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDP--R 199 (291)
Q Consensus 143 ~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~--~ 199 (291)
.+.+.++|+..+..+....++....|.|++.|...+.. ..++.|...++++.|+++ +
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 67788899998988777777999999999999766543 346778999999988754 3
Q ss_pred HHHHHHhhc-----CCCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 200 TLLDVLDLG-----GIANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 200 ~~~~~~~~~-----~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
.+.+.+... ...++|+++.. .+..+-++. .+++++.|+++|+++|.++.++++++...+
T Consensus 235 ~~~~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~i-----------~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 235 EVREYVRQVIQKTAANTSSMLQDLEAGRPTEIDAI-----------VGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHHHHhhccCCCCchHHHHHHcCCCcccchh-----------ccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 333333211 12223332211 111111111 257999999999999999999999976654
No 39
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.89 E-value=1.6e-21 Score=168.72 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=170.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------------cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..|+++||+|++++| +++.+.+.+.|..+ .++.++..+++|+||+|+|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 8999999999999999999999999999999 88888887765322 33455555789999999954
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecC----C
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAG----E 139 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g----~ 139 (291)
.++++++ +.+.+.+.++++|+.++++.. ..+.+.+.++.. ++.+..++..++......+...+.++. .
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~~-~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGIG-QLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCCC-hHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 6788888 788887878888888888742 334555555433 233344444433222222332334432 2
Q ss_pred HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH
Q 022834 140 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP 198 (291)
Q Consensus 140 ~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~---------------------~~~~~~E~~~~~~~~g~~~ 198 (291)
.+..+.+.++|...+..+....++....|.|++.|...+. +..++.|...++++.|+++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4566788888998888777777789999999999977655 2346778999999988764
Q ss_pred H--HHHHHHhh-----cCCCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 199 R--TLLDVLDL-----GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 199 ~--~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
. ...+.+.. ....++|+++.. .+.+ ++ ..-=.++++++++++|+++|.++++++++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~sSm~~D~~----~gr~-----tE-id~i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 235 RDDVVEEIVKIFAGAPGDMKTSMLRDME----KGRP-----LE-IDHLQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred ChhHHHHHHHHHhccCCCCCcHHHHHHH----cCCc-----cc-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 2 33232221 011222222111 0000 10 011136799999999999999999999997654
No 40
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.89 E-value=1.8e-21 Score=170.16 Aligned_cols=271 Identities=14% Similarity=0.171 Sum_probs=192.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC---------------CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+|.||++++..|+++| +|++|.|++++.+.+++.+ +...++..+.++++|+||+|+|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 79999999999999999999998 6889999999988887542 1234566777889999999995
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHH-----HHHHHHHHHhcCCcEEEcccCCChHhhcccceE--EEecC
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHET-----SIKISRAITSKGGHFLEAPVSGSKQPAETGQLV--ILSAG 138 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~g 138 (291)
++.+++++ +++.+.+++++.++.++++.... .+.+.+.+.......+..|-+.. ....|..+ ++.+.
T Consensus 87 -s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~--ev~~g~~t~~via~~ 160 (341)
T PRK12439 87 -SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR--EVAEGYAAAAVLAMP 160 (341)
T ss_pred -HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH--HHHcCCCeEEEEEeC
Confidence 57899999 88888887888889888875431 23333333322222345552221 11224322 34445
Q ss_pred CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCCCHHHH
Q 022834 139 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC-----------------MMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~-----------------~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+++..+.++++|+..+.+++...|+-..+|.|.+-|.+... +..++.|+.+++++.|.+++++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 77778899999999999988888888888999888865543 4568889999999999999999
Q ss_pred HHHHhhc----CCCccccccc--ccccccCCCCC-----CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 202 LDVLDLG----GIANPMFKGK--GPTMLQSNYAP-----AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 202 ~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
+.+...+ ++.|...+++ +..+.++.... -........-+..+.+.++++++++|+++++++++.
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~----- 315 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN----- 315 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-----
Confidence 8877654 3444333332 33333322100 011234567778899999999999999999998884
Q ss_pred CCCCCcHHHHHHHHH
Q 022834 271 GLGDNDFSAVFEVVK 285 (291)
Q Consensus 271 g~~~~d~~~~~~~~~ 285 (291)
++.+...+++.+-
T Consensus 316 --~~~~~~~~~~~l~ 328 (341)
T PRK12439 316 --HGSTVEQAYRGLI 328 (341)
T ss_pred --CCCCHHHHHHHHh
Confidence 5556666666653
No 41
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.89 E-value=1.2e-21 Score=162.20 Aligned_cols=248 Identities=19% Similarity=0.241 Sum_probs=181.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCcchhHHHHH-CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|+||.+|+..|.++| .+|++.+|++++.+.+.+ .|+..+++..++++++|+||+|| +|+.+++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 68999999999999999999999 589999999999975554 46666777788999999999999 889999999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISAL 150 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll 150 (291)
+++.+ ..++++||+...+. +.+.+.+++. +..++ .+| +..+..|..+. ++.+ +++..+.+..+|
T Consensus 80 --~~l~~-~~~~~lvISiaAGv--~~~~l~~~l~--~~~vvR~MP----Nt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~ 148 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAGV--SIETLERLLG--GLRVVRVMP----NTPALVGAGVTAISANANVSEEDKAFVEALL 148 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCCC--CHHHHHHHcC--CCceEEeCC----ChHHHHcCcceeeecCccCCHHHHHHHHHHH
Confidence 78877 66899999765554 4466777776 34454 777 66666665544 3332 677788999999
Q ss_pred HHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCcccccccc--c-ccccC
Q 022834 151 NVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKG--P-TMLQS 225 (291)
Q Consensus 151 ~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~--~-~~~~~ 225 (291)
+.+|..+++-.+ +....++--....+.+.++..+.++ +.+.|+++++.++++..+. +...++.... | .+.+.
T Consensus 149 ~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~ 225 (266)
T COG0345 149 SAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQ 225 (266)
T ss_pred HhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 999987665544 4555555455566666666666666 8899999999999988653 2223333332 2 33444
Q ss_pred CCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHCC
Q 022834 226 NYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG 271 (291)
Q Consensus 226 ~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 271 (291)
-.+||.+....+ +..++.|++.-+.+++.+.++++.+-|
T Consensus 226 VtSPGGtTiagl-------~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 226 VTSPGGTTIAGL-------RVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred CcCCCchHHHHH-------HHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 457776655443 344488888889999988888877643
No 42
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.88 E-value=3.7e-21 Score=162.58 Aligned_cols=250 Identities=15% Similarity=0.181 Sum_probs=180.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHH-CCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|.||.+|+..|.++|+ +|++++|++++++.+.+ .|+....+..+++++||+||+|+| |+++++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 689999999999999999999885 69999999999888875 687777788888899999999995 68899999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEE-EecC---CHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISALN 151 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll~ 151 (291)
+++.+.++++++||++..+.+ .+.+.+.+....-.+..+| +.....|..+. ++.+ +++..+.+..+|+
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~--i~~l~~~l~~~~~vvR~MP----N~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKS--IKSTENEFDRKLKVIRVMP----NTPVLVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCc--HHHHHHhcCCCCcEEEECC----ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 788887877889998776643 4556666643212233777 66665555444 2332 5667789999999
Q ss_pred HhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC-cccccc--ccc-ccccCC
Q 022834 152 VIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA-NPMFKG--KGP-TMLQSN 226 (291)
Q Consensus 152 ~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~-s~~~~~--~~~-~~~~~~ 226 (291)
.+|..++.-.+ +....++--+...+.+.++..+.++ +.+.|++.++..+++.+.... ..++.. ..+ .+.+.-
T Consensus 153 ~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V 229 (272)
T PRK12491 153 IFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMV 229 (272)
T ss_pred cCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 99987544333 5555555555666666666666666 888999999999888765322 222211 222 334444
Q ss_pred CCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 227 YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 227 ~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
.+||.+.. ..++..++.|++--+.+++.+..+++.+.
T Consensus 230 ~sPGGtT~-------~gl~~le~~~~~~~~~~av~aa~~r~~el 266 (272)
T PRK12491 230 CSPGGTTI-------EAVATLEEKGLRTAIISAMKRCTQKSMEM 266 (272)
T ss_pred CCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 56765543 35556668899989999998888887663
No 43
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.88 E-value=1.8e-21 Score=166.77 Aligned_cols=253 Identities=17% Similarity=0.211 Sum_probs=181.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc------------CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------------GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~------------~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+|+|.||+.++..|+++|++|+++.|++. ++++++.|..+. ....+....+|+||++| |..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 8999999999999999999999999999999754 888888764321 22234455799999999 889
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhccc--ceEE--EecCCH
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETG--QLVI--LSAGEK 140 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g--~~~~--~~~g~~ 140 (291)
++++++ +.+.+.+++++.|+.+.|+.... +.+.+.++.. |+.++.+-..+.......| ...+ +.++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~-e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHE-EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcHH-HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999 89999998999999888886543 4666666554 2233333322222222233 3332 223355
Q ss_pred HHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcC--CC
Q 022834 141 ALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSG--LD 197 (291)
Q Consensus 141 ~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g--~~ 197 (291)
+..+.+.++|+..+.++.+..++-...|.|++.|+..+.. ...+.|+..++.+.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 7788999999999999888888999999999999888853 346678888999988 44
Q ss_pred H---HHHHHHHhhc--CCCccccccccc-ccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 198 P---RTLLDVLDLG--GIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 198 ~---~~~~~~~~~~--~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
. +.+....... ...|+|+++... +.++.|+.. +++++.|+++|+++|.++.++++++.....
T Consensus 235 ~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~-----------G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 235 EEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAIN-----------GAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHh-----------hHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 4 3333444433 344555544321 333333322 579999999999999999999999877653
No 44
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.88 E-value=5.9e-21 Score=165.42 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=164.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc--------------cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+|.||+.+|..|+++||+|+++.|++ .+.+...|... .++. +....+|+||+|||
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK- 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK- 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec-
Confidence 799999999999999999999999999999975 34555544321 1122 33567899999994
Q ss_pred HHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcc--cceEE-EecC-
Q 022834 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAET--GQLVI-LSAG- 138 (291)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--g~~~~-~~~g- 138 (291)
..++.+++ +.+.+.+.+++.|+.+.++.. ..+.+.+.+++. ++.++.+...++...... |...+ ...+
T Consensus 82 ~~~~~~~~---~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~ 157 (313)
T PRK06249 82 TTANALLA---PLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGP 157 (313)
T ss_pred CCChHhHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCC
Confidence 46677777 777777878888888888743 335555555543 233343333333222222 33222 1122
Q ss_pred C-----HHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 022834 139 E-----KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAE 192 (291)
Q Consensus 139 ~-----~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~ 192 (291)
+ .+..+.+.++|+..|..+...+++....|.|++.|+..+.. ..++.|+..+++
T Consensus 158 ~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~ 237 (313)
T PRK06249 158 AADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAA 237 (313)
T ss_pred cccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 2 35667788899999998888888999999999999876653 345668888888
Q ss_pred HcCCCHH-----HHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHH------------HHHHHHHhhcCCCch
Q 022834 193 KSGLDPR-----TLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMP 255 (291)
Q Consensus 193 ~~g~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~------------~~~~~~a~~~g~~~p 255 (291)
+.|++.+ .+.+.+.... ....+|++|+ +++++.++++|+++|
T Consensus 238 a~Gi~~~~~~~~~~~~~~~~~~---------------------~~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~Gi~~P 296 (313)
T PRK06249 238 ACGHTLPEGYADHMLAVTERMP---------------------DYRPSMYHDFEEGRPLELEAIYANPLAAARAAGCAMP 296 (313)
T ss_pred hcCCCCChhHHHHHHHHhhcCC---------------------CCCChHHHHHHCCCcccHHHHhhHHHHHHHHhCCCCc
Confidence 8887632 1222211111 1123344553 789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 022834 256 IAAAANEAFKKARS 269 (291)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (291)
.++.++++++....
T Consensus 297 ~~~~l~~~l~~~e~ 310 (313)
T PRK06249 297 RVEMLYQALEFLDR 310 (313)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886654
No 45
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.88 E-value=2.6e-21 Score=166.67 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=170.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc-----------CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG-----------GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~-----------~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+|+|.||+.++..|+++|++|++++|+.++++.+.+. |+... ....+....+|+||+|| |..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence 899999999999999999999999999999988888888754 43221 11112235689999999 888
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEEcccCCChHhhcccceEEEecC-CHHHH
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAG-EKALY 143 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~g-~~~~~ 143 (291)
++++++ +.+.+.+.+++.|+.+.|+... .+.+.+.+++. ++.++.+...++....+.+...+.++. +.+..
T Consensus 82 ~~~~al---~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~ 157 (305)
T PRK05708 82 DAEPAV---ASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTA 157 (305)
T ss_pred hHHHHH---HHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcch
Confidence 999999 7888989899999999988542 23455555432 222232222222222233333334443 33456
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHcCCCHH--HHHH
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM------------------MNTFSEGLVLAEKSGLDPR--TLLD 203 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~------------------~~~~~E~~~~~~~~g~~~~--~~~~ 203 (291)
+++.++|...|..+.+..++....|.|++.|+..+.. ..++.|...++++.|++.. .+.+
T Consensus 158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~ 237 (305)
T PRK05708 158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHE 237 (305)
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 7788889988888887778999999999999876653 3456788888888887532 2222
Q ss_pred HHh----hc-CCCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-CCCC
Q 022834 204 VLD----LG-GIANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS-LGLG 273 (291)
Q Consensus 204 ~~~----~~-~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~-~g~~ 273 (291)
.+. .. ...++|+++.. .+..+-++. .+++++.++++|+++|.+++++++++.... .|.+
T Consensus 238 ~~~~~~~~~~~~~sSM~qD~~~gR~tEid~i-----------~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~~~ 303 (305)
T PRK05708 238 EVQRVIQATAANYSSMYQDVRAGRRTEISYL-----------LGYACRAADRHGLPLPRLQHLQQRLVAHLRARGLP 303 (305)
T ss_pred HHHHHHHhccCCCcHHHHHHHcCCceeehhh-----------hhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcCCC
Confidence 221 11 11222332211 011111111 267999999999999999999999877654 4443
No 46
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.87 E-value=6.2e-20 Score=156.23 Aligned_cols=192 Identities=17% Similarity=0.330 Sum_probs=144.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|||+|.||.+++..|.++|+ +|++|||++++.+.+.+.|.. ...+..++. ++|+||+|+|. ..+.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHH---
Confidence 899999999999999999999996 688999999988888777764 345666765 59999999966 5677777
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC----hHhh----cccceEEEec---CCHHHHHH
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS----KQPA----ETGQLVILSA---GEKALYDE 145 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~----~~g~~~~~~~---g~~~~~~~ 145 (291)
+++.+ ++++++|+|.++..+...+.+.+. .+..|+ .+|+.|. +..+ ..|...++++ .+++.++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 67777 778999999888766655555433 234577 5598764 3332 2566666665 36678899
Q ss_pred HHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 146 AISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 146 ~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+.++|+.+|.+++++++.++...+++++++.. .....+.+.. . .+.+.+.+.++..
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~~ 207 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhcc
Confidence 99999999999999999999999999999864 4444445553 1 3556665545443
No 47
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=4.4e-21 Score=159.83 Aligned_cols=254 Identities=23% Similarity=0.319 Sum_probs=198.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC---C--CcccCCHHHHH---hhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---G--ATVGGSPAEVI---KKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g--~~~~~~~~~~~---~~~dvvii~vp~~~~~~~ 72 (291)
+.||.||++-||..|+.+++.+||.|.+|+|+..+.+.+.+. | +....|+++.+ +.+.+|++.|.....++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 469999999999999999999999999999999999887643 3 33456888876 457888888877778888
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV 152 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~ 152 (291)
.+ +++.+++.+|++|||-.|.......+-.+.+.+.|+-|+.+.++|+...++.|+. ++.+|+.++.+.++++|..
T Consensus 87 ~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 87 FI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQK 162 (487)
T ss_pred HH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHHH
Confidence 88 8999999999999999998766666677778888999999999999999999985 7899999999999999987
Q ss_pred hc-------cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhhc---CCCcccccccccc
Q 022834 153 IG-------KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDLG---GIANPMFKGKGPT 221 (291)
Q Consensus 153 ~g-------~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~~~---~~~s~~~~~~~~~ 221 (291)
+. ..+.++|+-|++..+|+++|.+..+-+++++|++.+..+ .|++-+++.++...= ..-|...+ ....
T Consensus 163 iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLie-IT~d 241 (487)
T KOG2653|consen 163 IAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIE-ITAD 241 (487)
T ss_pred HHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHH-HhHH
Confidence 75 235789999999999999999999999999999999999 889999888877641 11111111 1112
Q ss_pred cccCCCCCCcccccHHHHH-------HHHHHHHhhcCCCchHHHH
Q 022834 222 MLQSNYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA 259 (291)
Q Consensus 222 ~~~~~~~~~~~~~~~~~d~-------~~~~~~a~~~g~~~p~~~~ 259 (291)
+++-+-..|.++-.-..|. ...+..|.+.|+|.|++..
T Consensus 242 Ilk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~e 286 (487)
T KOG2653|consen 242 ILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGE 286 (487)
T ss_pred HhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHH
Confidence 2211112222222222221 5567778899999988654
No 48
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.87 E-value=4.1e-20 Score=161.10 Aligned_cols=274 Identities=12% Similarity=0.038 Sum_probs=191.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-------CcEEEEcCCcc-----hhHHHHHC--------------CCcccCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~ 54 (291)
|||+|||+|+||+++|..|+++| |+|.+|.|+++ ..+.+.+. ++..+++..+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 79999999999999999999987 89999999876 35666542 234467788889
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCcccc--ccCCCcEEEEcCCCCHH-------HHHHHHHHHHhcCCcEEEcccCCChH
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLE--QICPGKGYIDMSTVDHE-------TSIKISRAITSKGGHFLEAPVSGSKQ 125 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~--~l~~~~~vv~~s~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (291)
+++|+|+++||. +.+++++ +++.+ .++++.++|+++.+... ..+-+.+.+. ..+.++..|-+....
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~Ev 166 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVANDV 166 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHHHH
Confidence 999999999955 7899999 78877 67667788888776321 1233333332 234445777555555
Q ss_pred hhcccceEEEecCCHHHHHHHHHHHHHhccceEeeCC-CCh--hHHHHH--------------HHHHHHHHHHHHHHHHH
Q 022834 126 PAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-VGN--GAKMKL--------------VVNMIMGCMMNTFSEGL 188 (291)
Q Consensus 126 ~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~~~~~~~~-~~~--a~~~k~--------------~~n~~~~~~~~~~~E~~ 188 (291)
.....+...+.+.+.+..+.++++|+.-..+++...| .|. +.++|- ..|.-.+.+...+.|+.
T Consensus 167 a~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~ 246 (365)
T PTZ00345 167 AREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMK 246 (365)
T ss_pred HcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 5555555556677888888999999887777777777 543 334443 36677777888999999
Q ss_pred HHHHHcC--CCHHHHHHHHhhc----CCCcccccccccccccCC--CC--C------CcccccHHHHHHHHHHHHhhcCC
Q 022834 189 VLAEKSG--LDPRTLLDVLDLG----GIANPMFKGKGPTMLQSN--YA--P------AFPLKHQQKDMRLALALGDENAV 252 (291)
Q Consensus 189 ~~~~~~g--~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~--~~--~------~~~~~~~~~d~~~~~~~a~~~g~ 252 (291)
+++++.| .++++++.+...+ ++.|+....++..+.++. .+ . .........-+..+.+.++++++
T Consensus 247 ~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i 326 (365)
T PTZ00345 247 LFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDL 326 (365)
T ss_pred HHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCC
Confidence 9999996 4889998877654 344432222344444321 11 0 01223356667888999999999
Q ss_pred --CchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHh
Q 022834 253 --SMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 286 (291)
Q Consensus 253 --~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 286 (291)
++|+++++++++. ++.+...+++.+..
T Consensus 327 ~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 327 KKEFPLFTVTYKIAF-------EGADPSSLIDVLST 355 (365)
T ss_pred CCCCCHHHHHHHHHh-------CCCCHHHHHHHHHc
Confidence 8999999999884 44555566665543
No 49
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.85 E-value=9.9e-20 Score=157.71 Aligned_cols=259 Identities=12% Similarity=0.019 Sum_probs=179.8
Q ss_pred eEEEEecChhhHHHHHHHHhCC--------CcEEEEcC-----CcchhHHHHHC--------C------CcccCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG--------FKVTVWNR-----TLSKCDELVAH--------G------ATVGGSPAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g--------~~V~~~~r-----~~~~~~~l~~~--------g------~~~~~~~~~~~ 54 (291)
||+|||+|+||+++|..|+++| |+|++|.| +++..+.+.+. | +..+++.++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 7999999999999999999999 99999998 44444544432 1 33457888899
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCH-H--H----HHHHHHHHHhcCCcEEEcccCCChHhh
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-E--T----SIKISRAITSKGGHFLEAPVSGSKQPA 127 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (291)
+++|+||++||. +.+++++ +++.+.+++++++|.++.+.. . + .+-+.+.+ ...+.++..|.+......
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~ 155 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK 155 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence 999999999966 7799999 788888888889999887732 2 2 22233333 223444566755554444
Q ss_pred cccceEEEecCC----HHHHHHHHHHHHHhccceEeeCC-CCh--hHHHHHH--------------HHHHHHHHHHHHHH
Q 022834 128 ETGQLVILSAGE----KALYDEAISALNVIGKKAFFLGE-VGN--GAKMKLV--------------VNMIMGCMMNTFSE 186 (291)
Q Consensus 128 ~~g~~~~~~~g~----~~~~~~~~~ll~~~g~~~~~~~~-~~~--a~~~k~~--------------~n~~~~~~~~~~~E 186 (291)
...+.+.+.+.+ .+..+.++++|+.--.+++...| .|. +.++|-+ .|.-.+.+...+.|
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E 235 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE 235 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444455555566 77788999999877777777666 543 3444433 56777778889999
Q ss_pred HHHHHHHcCCCHH--HHHHHHhhc----CCCcccccccccccccCCCCC--------CcccccHHHHHHHHHHHHhhcCC
Q 022834 187 GLVLAEKSGLDPR--TLLDVLDLG----GIANPMFKGKGPTMLQSNYAP--------AFPLKHQQKDMRLALALGDENAV 252 (291)
Q Consensus 187 ~~~~~~~~g~~~~--~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~a~~~g~ 252 (291)
+.+++++.|-+++ +++.+...+ ++.|+....++..+.+...+. .........-+..+.+.+++.++
T Consensus 236 m~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i 315 (342)
T TIGR03376 236 MIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK 315 (342)
T ss_pred HHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence 9999999999777 888776643 233322222333443311110 11123345667788899999999
Q ss_pred C--chHHHHHHHHHH
Q 022834 253 S--MPIAAAANEAFK 265 (291)
Q Consensus 253 ~--~p~~~~~~~~~~ 265 (291)
+ +|+++++++++.
T Consensus 316 ~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 316 DDEFPLFEAVYQILY 330 (342)
T ss_pred CcCCCHHHHHHHHHh
Confidence 9 999999999884
No 50
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.85 E-value=6.7e-20 Score=156.21 Aligned_cols=178 Identities=16% Similarity=0.264 Sum_probs=137.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||.+++..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|. ..+.+++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHH---HH
Confidence 899999999999999999999999999999999988888877643 232333567899999999965 5567777 77
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChH-hh-------cccceEEEec---CCHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQ-PA-------ETGQLVILSA---GEKALYDEAI 147 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-------~~g~~~~~~~---g~~~~~~~~~ 147 (291)
+.+.++++.+|.|+++..+...+.+... ...|+ .+|+.|.+. .. ..+...+++. ++++.++.+.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 8888878899999988877666555432 22477 489988752 22 2344444443 3678889999
Q ss_pred HHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHH
Q 022834 148 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSE 186 (291)
Q Consensus 148 ~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E 186 (291)
++++.+|.+++++++.+.+..+++++++.......++..
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~ 191 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQT 191 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 999999999999999999999999999876555444433
No 51
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.84 E-value=1.4e-20 Score=140.33 Aligned_cols=121 Identities=41% Similarity=0.748 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccc-cccCCCCCCcccccHHHHHHH
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKDMRL 242 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~ 242 (291)
|.+..+|+++|++...++..++|++.++++.|++++.++++++.+.+.|++++.+.++ +..++|.|+|+++.+.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6789999999999999999999999999999999999999999999999999999884 899999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 022834 243 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 284 (291)
Q Consensus 243 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~ 284 (291)
+.+.+++.|+|+|+.+.+.+.++.+.++|++++|++++++.|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999976
No 52
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.84 E-value=1.8e-19 Score=159.07 Aligned_cols=178 Identities=19% Similarity=0.289 Sum_probs=144.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|+||| +|.||..++..|.++||+|++|++++. .+.++++.+||+||+|+|.. ...+++ ++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~---~~ 161 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVI---AR 161 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHH---HH
Confidence 5899998 999999999999999999999998631 25667788999999999875 467777 67
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC-CHHHHHHHHHHHHHhccce
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKA 157 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~ 157 (291)
+.+ ++++++|+|+++..+.....+.+... ..|+ .+|++|+......+...+++++ +++.++.+.++++.+|.++
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v 237 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARL 237 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEE
Confidence 777 78999999999998877777765432 2588 9999998766666676667666 5677899999999999999
Q ss_pred EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 158 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 158 ~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
+++++.++...+++++.+ +++..++++..+++ .+.+.+.+.+
T Consensus 238 ~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 238 HRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 999999999999999854 67777777777766 7777666544
No 53
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.84 E-value=4e-19 Score=159.71 Aligned_cols=194 Identities=21% Similarity=0.286 Sum_probs=149.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+||| +|.||.+++..|.++|++|++|+|++++...+. +.|+....+..+.+.++|+||+|+|. ..+.+++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH---H
Confidence 8999997 899999999999999999999999988765544 44777677888888899999999966 5678888 7
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC---CHHHHHHHHHHHHHhc
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIG 154 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g 154 (291)
++.+.++++++|+|+++..+...+.+.+.++ .+..|+ .+|++|+......+...+++++ +.+.++.++++|+.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 8888888999999999988888888877654 367788 5699987666667777676654 5778899999999999
Q ss_pred cceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 155 KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 155 ~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
.+++.+++..+...+-.++. .+++..++.+.. +.+.|++.+....
T Consensus 156 ~~v~~~~~e~HD~~~a~vs~---lph~~a~al~~~-l~~~g~~~~~~~~ 200 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVVQG---LTHFAYISIAST-LKRLGVDIKESRK 200 (437)
T ss_pred CEEEECCHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHcCCCHHHHHh
Confidence 99888876555555433333 334444444433 3667888776544
No 54
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.84 E-value=7.7e-20 Score=156.69 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=140.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------C-----------------CCcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------H-----------------GATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~~~~~~ 56 (291)
.||+|||+|.||..+|..|+++||+|++||+++++++.+.+ . +++.+.+..+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 37999999999999999999999999999999998877542 1 13456678888899
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEE-EEcCCCCHHHHHHHHHHHH-hcCCcEEEcccCCChHhhcccceEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGY-IDMSTVDHETSIKISRAIT-SKGGHFLEAPVSGSKQPAETGQLVI 134 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~v-v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 134 (291)
||+||+|+|.+.+++..++ .++.+.+++++++ +++|+..+........... ..+.+|+ +|+.+ ++++.
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~-------~~Lve 151 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHK-------MKLVE 151 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCccc-------CceEE
Confidence 9999999999888777665 4577777788866 6788877765443322111 1245555 55433 35677
Q ss_pred EecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 135 LSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 135 ~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
++++ +++.++.+.++++.+|+.++++++ .| ++.|= ....++.|++.+.+.--.+++++-..+..+.
T Consensus 152 ~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nR---l~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~ 221 (288)
T PRK09260 152 LIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSR---ISALVGNEAFYMLQEGVATAEDIDKAIRLGL 221 (288)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 8887 899999999999999999999986 44 33332 2346788998887765467888877776543
No 55
>PRK07680 late competence protein ComER; Validated
Probab=99.84 E-value=2.1e-19 Score=152.79 Aligned_cols=196 Identities=13% Similarity=0.216 Sum_probs=137.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+++..|.++|+ +|++|+|++++.+.+.+. |+....+..++++++|+||+|+ +++.+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav-~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICV-KPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEec-CHHHHHHHH
Confidence 899999999999999999999984 799999999988887764 6777778888889999999999 567899999
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec--CCHHHHHHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNV 152 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~~~ll~~ 152 (291)
+++.+.++++++|++++++. ..+.+.+.+....+.+ .| +.+.....|...+..+ .+.+..+.+.++|+.
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~--~p--~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~ 150 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARI--IP--SITNRALSGASLFTFGSRCSEEDQQKLERLFSN 150 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEE--CC--ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence 77888887889999988764 3556666554322222 23 2233444565544444 256678899999999
Q ss_pred hccceEeeCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 153 IGKKAFFLGEVG-NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 153 ~g~~~~~~~~~~-~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+|..+++..+.. ....+-.+...+.+.++..+.++. .++.|+++++..+++...
T Consensus 151 ~G~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 151 ISTPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred CCCEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 996544433322 222222223344444445444442 244899999888887654
No 56
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.84 E-value=4.7e-19 Score=150.39 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=165.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---CcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+. |+.+..+..+.+.++|+||+|+ +++.+++++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v-~~~~~~~v~-- 79 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAV-KPQVMEEVL-- 79 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEc-CHHHHHHHH--
Confidence 68999999999999999999998 7899999999998888875 7777788888888999999999 557799998
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC--CHHHHHHHHHHHHHh
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVI 153 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~~ 153 (291)
+.+.+.+ +++|++++++.+. +.+...++ .+..++ .+| ..+.....+...+..+. +++..+.++.+|+.+
T Consensus 80 -~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~l 151 (267)
T PRK11880 80 -SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAF 151 (267)
T ss_pred -HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhC
Confidence 6777665 5788888877643 34554443 234455 444 22333333433333333 788889999999999
Q ss_pred ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Ccccccc--ccc-ccccCCCCC
Q 022834 154 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-ANPMFKG--KGP-TMLQSNYAP 229 (291)
Q Consensus 154 g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~-~s~~~~~--~~~-~~~~~~~~~ 229 (291)
|..+++..+.......-+..+.. +....++......+.+.|+++++..+++..... ....+.. ..+ .+.+.-.+|
T Consensus 152 G~~~~~~~e~~~d~~~a~~~~~p-a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 152 GKVVWVDDEKQMDAVTAVSGSGP-AYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred CeEEEECChHhcchHHHHhcChH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCC
Confidence 97544442322222222222211 111233333444478899999988887765421 1111111 111 122222344
Q ss_pred CcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 230 AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 230 ~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
|.+. ...++..++.|++-.+.+++.+.++++.+.
T Consensus 231 gG~t-------~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~ 264 (267)
T PRK11880 231 GGTT-------IAALRVLEEKGLRAAVIEAVQAAAKRSKEL 264 (267)
T ss_pred cHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 4332 346667788999999999999999998875
No 57
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.83 E-value=1.1e-18 Score=151.28 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=137.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----C--------------CcccCCHHHHHhhCCEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----G--------------ATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g--------------~~~~~~~~~~~~~~dvvi 61 (291)
+||+|||+|.||..++..|+++|++|++||+++++.+.+.+. + +...++..+++++||+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 489999999999999999999999999999999887766541 1 234567777888999999
Q ss_pred EecCCHHHH-HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC--
Q 022834 62 GMLADPAAA-LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG-- 138 (291)
Q Consensus 62 i~vp~~~~~-~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-- 138 (291)
+|+|.+.+. ..++ +++.+.++++++|+..+++.+ ...+.+.+.. ...++.......+ ..+.++.++.+
T Consensus 85 ~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~---~~~~l~~i~~g~~ 155 (311)
T PRK06130 85 EAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPA---DVIPLVEVVRGDK 155 (311)
T ss_pred EeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCC---ccCceEEEeCCCC
Confidence 999876554 4455 566666656666655444433 3455554432 2234432222222 22334445544
Q ss_pred -CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 022834 139 -EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 211 (291)
Q Consensus 139 -~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~ 211 (291)
+++.++.+.++++.+|..+++++....+. +++|+ +...++|++.++++.+++++++.+++..+.+.
T Consensus 156 t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 156 TSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRI----QHALAREAISLLEKGVASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 68899999999999999888886422222 44554 35789999999999999999999999866543
No 58
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.83 E-value=2.7e-19 Score=163.38 Aligned_cols=185 Identities=21% Similarity=0.332 Sum_probs=145.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..|+++||+|++||++++.++.. .+.| +..+.+.++ +.+|
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~a 87 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADC 87 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCC
Confidence 79999999999999999999999999999999988763 4445 466677766 4599
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEE-EcCCCCHHHHHHHHHHHHh----cCCcEEE-cccCCChHhhcccc
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLE-APVSGSKQPAETGQ 131 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~g~ 131 (291)
|+||.|+|++.+++..+| .++....++++++. ++|+..+.. +...+.. .|.+|++ +|+. +
T Consensus 88 DlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~G~hff~Pa~v~---------~ 153 (507)
T PRK08268 88 DLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVAGLHFFNPVPLM---------K 153 (507)
T ss_pred CEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEEEeecCCcccC---------e
Confidence 999999999999999887 45666666778874 677777753 4443322 2667765 4543 4
Q ss_pred eEEEecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022834 132 LVILSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 207 (291)
Q Consensus 132 ~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~ 207 (291)
++.+++| +++.++.+.++++.+|+.++++++ .| ++.|-+. ...+.|++.++++.+.+++++.+++..
T Consensus 154 LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 154 LVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6667765 889999999999999999999987 56 3445433 458999999999999999999999876
Q ss_pred cCC
Q 022834 208 GGI 210 (291)
Q Consensus 208 ~~~ 210 (291)
+.+
T Consensus 225 ~~G 227 (507)
T PRK08268 225 AAG 227 (507)
T ss_pred cCC
Confidence 443
No 59
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=3.6e-19 Score=150.16 Aligned_cols=243 Identities=12% Similarity=0.123 Sum_probs=159.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc---EEEEcCCcchhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||+|||+|+||.+++..|.+.|++ +.+|+|++++.+.+.+. +...+.++.++++++|+||+|+| ++++.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 8999999999999999999998864 57899999998888765 46777888888899999999996 68889988
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHHHHHHHHHHHHHhcc
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK 155 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ll~~~g~ 155 (291)
+++. +.++++||+++.+ ...+.+.+.+......+..+|.. +.....+ .+.++.++ +.++++|+.+|.
T Consensus 79 --~~l~--~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~--~~a~~~g-~t~~~~~~----~~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RALR--FRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLP--FVAERKG-VTAIYPPD----PFVAALFDALGT 145 (258)
T ss_pred --HHhc--cCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCC--hhhhCCC-CeEecCCH----HHHHHHHHhcCC
Confidence 5552 4578888876544 44566666664433456688852 2222222 23344332 589999999998
Q ss_pred ceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-cc-c-cc-cc-cccccCCCCCC
Q 022834 156 KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PM-F-KG-KG-PTMLQSNYAPA 230 (291)
Q Consensus 156 ~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s-~~-~-~~-~~-~~~~~~~~~~~ 230 (291)
.++...+.......-+ .. ..+....++.++...+++.|+++++..+++......+ .+ . +. .. ..+.+.-.+||
T Consensus 146 ~~~~~~e~~~d~~~a~-~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 146 AVECDSEEEYDLLAAA-SA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred cEEECChHhccceeeh-hc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence 7664333111111111 11 2233345778888899999999999988887543222 22 1 11 12 13334445666
Q ss_pred cccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 022834 231 FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 267 (291)
Q Consensus 231 ~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 267 (291)
.+.. ..++..++.|++-.+.+++.+..++.
T Consensus 224 GtT~-------~gl~~le~~~~~~~~~~a~~aa~~r~ 253 (258)
T PRK06476 224 GLNE-------QVLNDFSRQGGYAALTDALDRVLRRI 253 (258)
T ss_pred chHH-------HHHHHHHHCChHHHHHHHHHHHHHHh
Confidence 5443 34555567777777777766666554
No 60
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.81 E-value=1.2e-18 Score=158.60 Aligned_cols=184 Identities=20% Similarity=0.260 Sum_probs=140.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-----------HHCC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 56 (291)
.||+|||+|.||..||..|+++||+|++||++++.++.. .+.| ++.++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 479999999999999999999999999999999988653 3334 345667765 469
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEE-EcCCCCHHHHHHHHHHHH----hcCCcEEE-cccCCChHhhccc
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAIT----SKGGHFLE-APVSGSKQPAETG 130 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~g 130 (291)
||+||.|+|.+.+++..+| .++....++++++. ++|+..+. ++.+.+. ..|.+|++ +|+.
T Consensus 85 aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred CCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence 9999999999999999887 45666676666655 34444443 3333332 23667765 4543
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 131 QLVILSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 131 ~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+++.+++| +++.++.+.++++.+|+.++++++ .|. +.|-+. ...+.|++.++++.+.+++++.++++
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 36678888 899999999999999999999987 552 444332 47999999999999999999999887
Q ss_pred hc
Q 022834 207 LG 208 (291)
Q Consensus 207 ~~ 208 (291)
.+
T Consensus 222 ~~ 223 (503)
T TIGR02279 222 DG 223 (503)
T ss_pred hc
Confidence 64
No 61
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.80 E-value=4.6e-17 Score=136.20 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=121.9
Q ss_pred CeEEEEecChh--------------------hHHHHHHHHhCCCcEEEEcCCcchh-----HHHHHCCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSKC-----DELVAHGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~~~-----~~l~~~g~~~~~~~~~~~~ 55 (291)
|||.|+|+|+- |..||.+|.++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 89999999986 8999999999999999999987654 4577889999999999999
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHH-H--HhcCCc---EEEcccCCChHhhcc
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRA-I--TSKGGH---FLEAPVSGSKQPAET 129 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~~~~ 129 (291)
++|+||+|+|++.++++++ .++.+.+++|++|||+||..|....++.+. + ..+++. |+.+.+.|.+...
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~-- 155 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHG-- 155 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCc--
Confidence 9999999999999999998 678888889999999999999888777664 2 222332 3333344433221
Q ss_pred cceEEEecC---------CHHHHHHHHHHHHHhccceEeeCC
Q 022834 130 GQLVILSAG---------EKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 130 g~~~~~~~g---------~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
. .+++| ++++.+++-++.+..++.++.+..
T Consensus 156 --~-~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa 194 (341)
T TIGR01724 156 --H-YVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPA 194 (341)
T ss_pred --e-eeeccccccccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 1 12111 788999999999999998877543
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=3e-17 Score=140.94 Aligned_cols=193 Identities=14% Similarity=0.152 Sum_probs=139.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------C---------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H---------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~---------g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+|.||..||..|+.+|++|++||++++..+.+.+ . .+...++.++++++||+|+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlVi 88 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQ 88 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEE
Confidence 7999999999999999999999999999999886654322 2 2355678888889999999
Q ss_pred EecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC---
Q 022834 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG--- 138 (291)
Q Consensus 62 i~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g--- 138 (291)
.|+|...+++..+| .++.+..+++++|. .||+ +....++.+.+.. .-.++....+.++. .-+++-++.+
T Consensus 89 EavpE~l~vK~~lf--~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~-p~R~~g~HffnP~~---~~pLVEVv~g~~T 160 (321)
T PRK07066 89 ESAPEREALKLELH--ERISRAAKPDAIIA-SSTS-GLLPTDFYARATH-PERCVVGHPFNPVY---LLPLVEVLGGERT 160 (321)
T ss_pred ECCcCCHHHHHHHH--HHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCC-cccEEEEecCCccc---cCceEEEeCCCCC
Confidence 99999999999887 67888887777444 3333 3334455554432 22344333232222 2234445554
Q ss_pred CHHHHHHHHHHHHHhccceEeeC-C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 022834 139 EKALYDEAISALNVIGKKAFFLG-E-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 211 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~-~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~ 211 (291)
+++..+.+.+++..+|+.++.+. + +| ++.|= ...+++.|++.+.+.-..+++++-.++..+.+.
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NR---l~~a~~~EA~~lv~eGvas~edID~a~~~g~g~ 226 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPG------FIADR---LLEALWREALHLVNEGVATTGEIDDAIRFGAGI 226 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 78899999999999999888874 4 44 33332 345788999999888778999999988876554
No 63
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.79 E-value=1.1e-17 Score=141.04 Aligned_cols=244 Identities=14% Similarity=0.162 Sum_probs=161.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||.+++..|.+++. ++++++|++++. +.....++.+.++++|+||+|+ +++++++++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilav-kp~~~~~vl-- 74 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAV-KPDLAGKVL-- 74 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEe-CHHHHHHHH--
Confidence 899999999999999999998872 499999876542 3344567778888999999999 678899999
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC---CHHHHHHHHHHHHHh
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAISALNVI 153 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~ 153 (291)
+++.+.+.++.+|.+++..... .+...+......+...| +.+.....+.. .++.. +++..+.+.++|+.+
T Consensus 75 -~~i~~~l~~~~iIS~~aGi~~~---~l~~~~~~~~~vvr~mP--n~p~~~g~g~t-~i~~~~~~~~~~~~~v~~l~~~~ 147 (260)
T PTZ00431 75 -LEIKPYLGSKLLISICGGLNLK---TLEEMVGVEAKIVRVMP--NTPSLVGQGSL-VFCANNNVDSTDKKKVIDIFSAC 147 (260)
T ss_pred -HHHHhhccCCEEEEEeCCccHH---HHHHHcCCCCeEEEECC--CchhHhcceeE-EEEeCCCCCHHHHHHHHHHHHhC
Confidence 7787777554444444444433 34444432211122333 22333333332 23332 566788999999999
Q ss_pred ccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Ccccccc--ccc-ccccCCCC
Q 022834 154 GKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-ANPMFKG--KGP-TMLQSNYA 228 (291)
Q Consensus 154 g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~-~s~~~~~--~~~-~~~~~~~~ 228 (291)
|..++.-.+ +.....+--+...+.+.++..+.++ +.+.|++.++..+++..... ...++.. ..+ .+.+.-.+
T Consensus 148 G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~s 224 (260)
T PTZ00431 148 GIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCS 224 (260)
T ss_pred CcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCC
Confidence 987665443 5555555555666766666766666 88899999999998876532 2223322 222 44445556
Q ss_pred CCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 229 PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 229 ~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
||.+... .++..++.|++--+.+++.+..+++.+.
T Consensus 225 pgG~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 225 PGGITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred CChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 7665443 4555567888888888888888877653
No 64
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=2.3e-17 Score=140.68 Aligned_cols=190 Identities=19% Similarity=0.231 Sum_probs=137.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHH-----------HHHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..|+.+||+|++||++++.++. +.+.| ++.+++. +.+++|
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~ 85 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADR 85 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCC
Confidence 7999999999999999999999999999999998776 33333 2256677 557899
Q ss_pred CEEEEecCCHHHHHHHHhccCcccccc-CCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcEEEc-ccCCChHhhcccceE
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQI-CPGKGYIDMSTVDHETSIKISRAITSK--GGHFLEA-PVSGSKQPAETGQLV 133 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l-~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~g~~~ 133 (291)
|+||.|+|.+.+++..+| ..+.+.. ++++++++.|+..|.+........+++ +.+|... |+.+. -+++
T Consensus 86 d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~l------vElv 157 (286)
T PRK07819 86 QLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPL------VELV 157 (286)
T ss_pred CEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCce------EEEe
Confidence 999999999999999887 4566666 789999988888776544333223333 4444432 22111 1222
Q ss_pred EEecCCHHHHHHHHHHHH-HhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 134 ILSAGEKALYDEAISALN-VIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 134 ~~~~g~~~~~~~~~~ll~-~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
....++++.++.+.+++. .+|+.++.+++ +| ++.|= .....++|+..+.++.-.+++++-.++..+.
T Consensus 158 ~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nR---i~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 158 PTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNA---LLVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 233458999999999988 59999988876 54 22232 2457788999888766577888877776553
No 65
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=2.8e-17 Score=139.79 Aligned_cols=246 Identities=12% Similarity=0.164 Sum_probs=160.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCC----CcEEEEcCCc-chhHHHHHC--CCcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTL-SKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g----~~V~~~~r~~-~~~~~l~~~--g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+|.||.+++..|.++| ++|++|+|++ ++.+.+... +.....+..++++++|+||+|+| ++.+.++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 68999999999999999999988 7899999864 445555443 34455677888889999999995 6789999
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAIS 148 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ 148 (291)
+ +++.+.+.++++||+++++... .++.+.++. ..++ .+| +.....|..+. ++.+ +++..+.++.
T Consensus 81 l---~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MP----N~~~~~g~g~t~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIP----SLTSAVGVGTSLVAHAETVNEANKSRLEE 149 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeC----ccHHHHhhhcEEEecCCCCCHHHHHHHHH
Confidence 9 7787777778888888776443 356655542 2343 667 55555444433 3332 5667889999
Q ss_pred HHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcCCCc-cccc--cccc-cc
Q 022834 149 ALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVLDLGGIAN-PMFK--GKGP-TM 222 (291)
Q Consensus 149 ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~-g~~~~~~~~~~~~~~~~s-~~~~--~~~~-~~ 222 (291)
+|+.+|..+++-.+ +....++--+...+.+.++..+.++ +.+. |+++++..+++..+...+ .++. ...+ .+
T Consensus 150 l~~~~G~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l 226 (277)
T PRK06928 150 TLSHFSHVMTIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGT 226 (277)
T ss_pred HHHhCCCEEEEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 99999987655433 5444554445556655666666666 6777 799998888887653222 2221 1222 34
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 223 LQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 223 ~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
.+.-.+||.+....+. ..++ |++--+.+++.+..++..+
T Consensus 227 ~~~v~spgGtT~~gl~-------~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 227 IERVATKGGITAEGAE-------VIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHhCCCCChHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4444567655443322 2232 5555555555555555443
No 66
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.76 E-value=2e-16 Score=133.08 Aligned_cols=174 Identities=19% Similarity=0.271 Sum_probs=134.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH--HHHHCCCccc--CCH-HHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD--ELVAHGATVG--GSP-AEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~--~l~~~g~~~~--~~~-~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|+|+|+|+|.||.++++.|.++|+.|.+++++..... ...+.|+... .+. .+...++|+||+|||- ..+.+++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l- 81 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL- 81 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH-
Confidence 6899999999999999999999999877766554433 3333444322 222 4566779999999965 6788898
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC--hHhhcccceEEEecC---CHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS--KQPAETGQLVILSAG---EKALYDEAISA 149 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~g~~~~~~~g---~~~~~~~~~~l 149 (291)
+++.+.++++.+|.|.++......+.+.+..++.. .|+ .+|++|+ ......+...+++.+ +.+.++.+.++
T Consensus 82 --~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~ 158 (279)
T COG0287 82 --KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRL 158 (279)
T ss_pred --HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 88998999999999999998888888887776655 788 8999998 445556666666655 45678889999
Q ss_pred HHHhccceEeeCCCChhHHHHHHHHHHHHH
Q 022834 150 LNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 179 (291)
Q Consensus 150 l~~~g~~~~~~~~~~~a~~~k~~~n~~~~~ 179 (291)
++.+|.+++.+....+...+-.++.+.-..
T Consensus 159 ~~~~ga~~v~~~~eeHD~~~a~vshLpH~~ 188 (279)
T COG0287 159 WEALGARLVEMDAEEHDRVMAAVSHLPHAA 188 (279)
T ss_pred HHHcCCEEEEcChHHHhHHHHHHHHHHHHH
Confidence 999999999998878888877776654333
No 67
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.76 E-value=2.1e-16 Score=139.26 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=140.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++|+|||+|.||.+++..|.++|++|.+|+++++..+.....+..+ ..+..+++++||+||+|+|. ..+.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH--
Confidence 4899999999999999999999999999999887655544444332 34567788899999999976 5688888
Q ss_pred cCcccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE-cccCCChH--------hhcccceEEEec---CCHHHH
Q 022834 77 KGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSKQ--------PAETGQLVILSA---GEKALY 143 (291)
Q Consensus 77 ~~~l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~g~~~~~~~---g~~~~~ 143 (291)
+++.+ .++++.+|.|.++......+.+...+ ..+..|+. +|+.|... ....+...+++. .+.+.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 77776 37788999999999887777776543 34567885 88888631 223455455554 367889
Q ss_pred HHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 144 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 144 ~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+.+.++++.+|..++++++......+.+++.+..... +++ +...+.+.+....+..
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~al--~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SSL--AARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HHH--HHhhccCchHHHhhhc
Confidence 9999999999999888887777777777776653333 222 3444555554444444
No 68
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.76 E-value=2e-16 Score=136.87 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=130.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCC--cccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.+.|+ +|++|+|++++.+.+.+.|. ....+..+.++++|+||+|+|. ....+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~-- 83 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA-- 83 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence 589999999999999999999985 89999999988888877764 2445677788899999999976 5567777
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE-cccCCChH-h-------hcccceEEEe---cCCHHHHH
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSKQ-P-------AETGQLVILS---AGEKALYD 144 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-------~~~g~~~~~~---~g~~~~~~ 144 (291)
+++.+.++++.+|+++++......+.+...+. .++.|+. +|+.|+.. . ...|...+++ +++.+.++
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~ 161 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVA 161 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHH
Confidence 66777788889999998887777666655443 3567884 58876432 1 1133333343 34778889
Q ss_pred HHHHHHHHhccceEeeCCCChhHHHHHHHHHHH
Q 022834 145 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 177 (291)
Q Consensus 145 ~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~ 177 (291)
.+.++++.+|.+++++++......+-++..+..
T Consensus 162 ~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph 194 (307)
T PRK07502 162 RLTAFWRALGARVEEMDPEHHDLVLAITSHLPH 194 (307)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHH
Confidence 999999999999988887666777666666543
No 69
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.76 E-value=5.3e-17 Score=139.67 Aligned_cols=185 Identities=18% Similarity=0.267 Sum_probs=131.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHH-----------HHHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..|+..|+++|++|++||+++++++. +.+.| ....++ .+.+++|
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~a 84 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN-LEELRDA 84 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC-HHHhCCC
Confidence 7999999999999999999999999999999887653 33322 223334 4567899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEE-EcCCCCHHHHHHHHHHHHh----cCCcEEEcccCCChHhhcccce
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQL 132 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv-~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~ 132 (291)
|+||+|+|.+.+++..++ .++.+.++++++|+ ++|+..+.. +.+.+.. .+++|.+.|.. +.+
T Consensus 85 D~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~h~~~pp~~--------~~l 151 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISITR---LASATQRPQQVIGMHFMNPPPI--------MKL 151 (295)
T ss_pred CEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEEeccCCccc--------Cce
Confidence 999999998888887766 55777777888876 455665544 3333322 13444444432 234
Q ss_pred EEEecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 133 VILSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 133 ~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+.++.+ +++.++.+.++|+.+|+.++++++ .| . +.+. .+...+.|++.+.+....+++++-..+..+
T Consensus 152 veiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g--~---i~nr----i~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 152 VEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG--F---IVNR----ILMPMINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc--H---HHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 445543 888999999999999999988877 44 1 2222 345678999998887667888887776654
Q ss_pred C
Q 022834 209 G 209 (291)
Q Consensus 209 ~ 209 (291)
.
T Consensus 223 ~ 223 (295)
T PLN02545 223 T 223 (295)
T ss_pred c
Confidence 3
No 70
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=2e-16 Score=135.88 Aligned_cols=186 Identities=17% Similarity=0.283 Sum_probs=129.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 56 (291)
+||+|||+|.||..++..|+++|++|++||+++++++.+.+ .| +...++.+ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 48999999999999999999999999999999988766432 23 34455664 4679
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEE-cCCCCHHHHHHHHHHHHhc----CCcEEE-cccCCChHhhccc
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYID-MSTVDHETSIKISRAITSK----GGHFLE-APVSGSKQPAETG 130 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~g 130 (291)
||+||+|+|.+.+++..++ +++.+.++++++++. +|+..+. .+.+.+... +++|++ .|+. +
T Consensus 84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~--------~ 150 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVM--------K 150 (292)
T ss_pred CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccC--------c
Confidence 9999999998777666555 577788888888874 4444432 455443211 344444 1211 1
Q ss_pred ceEEE--ecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 131 QLVIL--SAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 131 ~~~~~--~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
-..++ .+++++.++.+.++++.+|+.++++++.. -++.+++ ....+.|++.+.++.-.+++++-.++..+
T Consensus 151 ~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl----~~~~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 151 LVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRI----LLPMINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHH----HHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 11122 24689999999999999999999887733 2333343 36778888888777445788887777644
No 71
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=3.3e-16 Score=134.16 Aligned_cols=194 Identities=15% Similarity=0.207 Sum_probs=133.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-------------------------CCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------------HGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------------~g~~~~~~~~~~~~ 55 (291)
+||+|||+|.||..+|..|+++|++|++||+++++++.+.+ .++...++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 48999999999999999999999999999999887665432 12345678888889
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVIL 135 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 135 (291)
++|+||+|+|.+.+++..++ +++.+.++++++|++.++..+. .++.+.+. +.-.|+....+.+ ....++..+
T Consensus 84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p---~~~~~lvev 155 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANE---IWKNNTAEI 155 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCC---CCcCCeEEE
Confidence 99999999998765555443 6677777778877655544322 22333322 2234554332222 223344445
Q ss_pred ec---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 136 SA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 136 ~~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
+. .+++.++.+.+++..+|+.++.+.....+..... .....+.|++.+.+....+++++-.++..+.
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nR-------i~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNS-------LLVPFLSAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHH-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 43 4788999999999999998887753233333322 2346788999988776678998887776543
No 72
>PLN02256 arogenate dehydrogenase
Probab=99.73 E-value=4e-16 Score=133.63 Aligned_cols=170 Identities=12% Similarity=0.173 Sum_probs=128.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|++|++++. .+...+.|+....+.++++ .++|+||+|+|. ..+.+++ ++
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~~ 111 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---RS 111 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---Hh
Confidence 6899999999999999999999999999999864 3444455777677787776 469999999965 6788888 67
Q ss_pred c-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh--hcccceEEEec-------CCHHHHHHHHH
Q 022834 80 V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP--AETGQLVILSA-------GEKALYDEAIS 148 (291)
Q Consensus 80 l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~g~~~~~~~-------g~~~~~~~~~~ 148 (291)
+ .+.++++++|+|++++.....+.+.+.++. +..|+ .+|++|.... ...+...+... .+++..+.+.+
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 190 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLD 190 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHH
Confidence 7 566778999999999877777777766543 45677 8898887643 22233323322 25677889999
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
+++.+|.+++.+....+...+-.++.+.
T Consensus 191 l~~~lGa~v~~~~~eeHD~~vA~iShLp 218 (304)
T PLN02256 191 IFEEEGCRMVEMSCEEHDRYAAGSQFIT 218 (304)
T ss_pred HHHHCCCEEEEeCHHHHhHHHHhhhhHH
Confidence 9999999999998877776665555443
No 73
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.72 E-value=4.7e-16 Score=130.34 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=133.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC---c-EEEEcC-CcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF---K-VTVWNR-TLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~---~-V~~~~r-~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.||.+++..|.++|+ + +++++| ++++.+.+.+. ++..+.+.+++++++|+||+|+|+ +.+++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~ 83 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELL 83 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHH
Confidence 589999999999999999998863 3 677887 46777777654 777777888888999999999966 5678888
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE-EEcccCCChHhhc--ccceEEEec--CCHHHHHHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF-LEAPVSGSKQPAE--TGQLVILSA--GEKALYDEAISA 149 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~g~~~~~~~--g~~~~~~~~~~l 149 (291)
+++.+.++ +++||+++.+... +.+.+.+.. +..+ ..+| +.... .+...+.++ .+++..+.++++
T Consensus 84 ---~~l~~~~~-~~~vis~~~gi~~--~~l~~~~~~-~~~v~r~~P----n~a~~v~~g~~~~~~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 84 ---AELSPLLS-NQLVVTVAAGIGP--SYLEERLPK-GTPVAWIMP----NTAAEIGKSISLYTMGQSVNETHKETLQLI 152 (245)
T ss_pred ---HHHHhhcc-CCEEEEECCCCCH--HHHHHHcCC-CCeEEEECC----cHHHHHhcCCeEEeeCCCCCHHHHHHHHHH
Confidence 67776664 6788988777543 345555532 2223 3556 33333 343333333 377888999999
Q ss_pred HHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 150 LNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 150 l~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
|+.+|..++.-.+ .....++--+...+.+.++..+.++ +.+.|+++++..+++...
T Consensus 153 f~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 153 LKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 9999988764333 4444444344444544445555555 889999999888887754
No 74
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.72 E-value=5e-16 Score=133.32 Aligned_cols=185 Identities=17% Similarity=0.261 Sum_probs=129.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH--------------CCC-------------cccCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--------------HGA-------------TVGGSPAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--------------~g~-------------~~~~~~~~~~ 54 (291)
||+|||+|.||..++..|+++|++|++||+++++++...+ .|. ...++. +.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 83 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESL 83 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHh
Confidence 7999999999999999999999999999999988764321 121 233344 567
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEEE-cccCCChHhhcc
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLE-APVSGSKQPAET 129 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~ 129 (291)
++||+||+|+|.+..++..++ +++.+.++++++++..+++. ...++.+.+... +.+|.. +++.+
T Consensus 84 ~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~------- 152 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMK------- 152 (291)
T ss_pred CCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCc-------
Confidence 899999999998776555554 56777777788877555443 334555544322 333332 22221
Q ss_pred cceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 130 GQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 130 g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
++-++.+ +++.++.+.++++.+|+.++++++.......|++.| .+.|++.+.+.--.+++++-.++.
T Consensus 153 --~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~ 222 (291)
T PRK06035 153 --LIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCK 222 (291)
T ss_pred --cEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHh
Confidence 1122222 788999999999999999999988666666666655 467888877653357888877776
Q ss_pred hc
Q 022834 207 LG 208 (291)
Q Consensus 207 ~~ 208 (291)
.+
T Consensus 223 ~~ 224 (291)
T PRK06035 223 LA 224 (291)
T ss_pred hc
Confidence 54
No 75
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=1.8e-15 Score=129.37 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=129.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH-----------HHHHCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~-----------~l~~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..++..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++|
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~a 83 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDA 83 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 799999999999999999999999999999998874 233333 23345554 47899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEe
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 136 (291)
|+||+|+|++..++..++ +++.+.++++++++..+++.+. ..+.+.+... -.++ .+|.. +....+.+.++
T Consensus 84 DlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~-~r~ig~h~~~----P~~~~~~vev~ 154 (282)
T PRK05808 84 DLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLSI--TELAAATKRP-DKVIGMHFFN----PVPVMKLVEII 154 (282)
T ss_pred CeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCC-cceEEeeccC----CcccCccEEEe
Confidence 999999988777774443 6788888788887554444332 3555555322 2344 33321 11222222333
Q ss_pred c---CCHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 137 A---GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 137 ~---g~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
. .+++..+.+.++++.+|+.++++++ .| ++.| -.+..++.|+..+.++.-.+++++-..+..+
T Consensus 155 ~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~---Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 155 RGLATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVN---RILIPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 2 3789999999999999999998876 33 2222 2345778899988877557788887777654
No 76
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.71 E-value=2e-16 Score=130.14 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=114.8
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------CCc---ccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------GAT---VGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g~~---~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+||| +|.||.+++..|+++||+|++|+|++++.+.+.+. |.. ...+..+.++++|+||+|+| ++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence 8999997 89999999999999999999999999888776542 221 12356678889999999994 57
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHH---------------HHHHHHHHHHhcCCcEE-Ecc-----cCCChHhh
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHE---------------TSIKISRAITSKGGHFL-EAP-----VSGSKQPA 127 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~---------------~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~ 127 (291)
++.+++ +++.+.+ ++++||+++++.+. ..+.+.+.++. +.+++ ..+ +.... ..
T Consensus 80 ~~~~~l---~~l~~~l-~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 80 HVLKTL---ESLRDEL-SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HHHHHH---HHHHHhc-cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 788888 6666656 45899999887542 12445555543 12333 222 11211 12
Q ss_pred cccceEEEecCCHHHHHHHHHHHHHh-ccceEeeCCCChhHHHH
Q 022834 128 ETGQLVILSAGEKALYDEAISALNVI-GKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 128 ~~g~~~~~~~g~~~~~~~~~~ll~~~-g~~~~~~~~~~~a~~~k 170 (291)
..+..+++++.++++.+.+.++.+.+ |++++.+|++..+..+-
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 22344456677788889999999999 99999998866554443
No 77
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.70 E-value=1e-15 Score=131.74 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc--------------cCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
.||+.+|..|+++||+|++++|+ ++.+.+.+.|..+ .+++++ ...+|+||+|| +..++++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~v-Ks~~~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITV-KAYQTEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEec-cchhHHHHH-
Confidence 48999999999999999999997 7777887665321 222333 45789999999 557889998
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC----CcEEEcccCCChHhhcccceEEEecC---CHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAIS 148 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~g---~~~~~~~~~~ 148 (291)
+.+.+.+.++++|+.+.++... .+.+.+.+.... +.+..+-..++......+...+.++. ..+..+.+.+
T Consensus 77 --~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~ 153 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAE 153 (293)
T ss_pred --HHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHH
Confidence 7888888888999988887432 244555454321 22222222222212222222233333 2245677888
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCHH--HHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDPR--TLLDVL 205 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~~--~~~~~~ 205 (291)
+|+..+..+....++....|.|++.|+..+.. ..++.|+..++++.|+++. .+.+.+
T Consensus 154 ~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~ 233 (293)
T TIGR00745 154 LLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELV 233 (293)
T ss_pred HHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 89888888888888999999999999765542 3467799999999887543 233333
Q ss_pred hh----cC-CCcccccccc-cccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 022834 206 DL----GG-IANPMFKGKG-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR 268 (291)
Q Consensus 206 ~~----~~-~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 268 (291)
.. .. ..++|+++.. .+..+-+ -=.+++++.|+++|+++|.++.++++++...
T Consensus 234 ~~~~~~~~~~~sSm~~D~~~gr~tEid-----------~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 234 RAVIRMTAENTSSMLQDLLRGRRTEID-----------AINGAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHHHhcCCCCCChHHHHHHcCCcchHH-----------HhccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 21 11 1223332211 0111111 1136789999999999999999999887543
No 78
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.69 E-value=2.4e-16 Score=125.50 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=95.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--------------------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvv 60 (291)
|||+|||+|.+|..+|..|+++||+|+++|.++++.+.+++. +...+++.++++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 999999999999999999999999999999999998887652 234567788888999999
Q ss_pred EEecCCHH---------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHH-HHHhcC-----CcEEEcccC---C
Q 022834 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISR-AITSKG-----GHFLEAPVS---G 122 (291)
Q Consensus 61 ii~vp~~~---------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~---~ 122 (291)
|+|||++. .+++++ +.+.+.++++++||..||..|.+.+++.. .+.+.+ +.+..+|-+ |
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 99998663 577777 78888898999999999999999996554 444333 234466633 3
Q ss_pred ChHhhcccceEEEecCCHH-HHHHHHH
Q 022834 123 SKQPAETGQLVILSAGEKA-LYDEAIS 148 (291)
Q Consensus 123 ~~~~~~~g~~~~~~~g~~~-~~~~~~~ 148 (291)
...........++.|.+++ ..+.+++
T Consensus 158 ~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 158 RAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp SHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 3333223333345554443 3335544
No 79
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.69 E-value=5e-16 Score=122.72 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=114.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHC-CCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAH-GAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~-g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|+|+|+|+||.+++++|+++||+|++.+|+.+ +.+...+. +.. ...+++++++.+|+||++||. .++.+++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~--- 77 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL--- 77 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---
Confidence 7899999999999999999999999999965554 44444332 322 235788899999999999977 6678888
Q ss_pred CccccccCCCcEEEEcCCCC---------------HHHHHHHHHHHHhcC----CcEEEcccCCChHhhcccceEEEecC
Q 022834 78 GGVLEQICPGKGYIDMSTVD---------------HETSIKISRAITSKG----GHFLEAPVSGSKQPAETGQLVILSAG 138 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~---------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~g 138 (291)
.++...+ .+++|||.++.. .+..+.+.+.++... ++-+.+..............+.+++.
T Consensus 78 ~~l~~~~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagD 156 (211)
T COG2085 78 AELRDAL-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGD 156 (211)
T ss_pred HHHHHHh-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecC
Confidence 6777777 589999998851 123445555554431 11222222211111112334456777
Q ss_pred CHHHHHHHHHHHHHhccceEeeCCCChhHHHH
Q 022834 139 EKALYDEAISALNVIGKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 139 ~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k 170 (291)
|.++.+.+.++.+.+|.+.+.+|+...+..+-
T Consensus 157 D~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 157 DAEAKAVVAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred cHHHHHHHHHHHHhcCcceeeccccccccccc
Confidence 88899999999999999999998866554443
No 80
>PLN02712 arogenate dehydrogenase
Probab=99.66 E-value=3.7e-15 Score=140.03 Aligned_cols=163 Identities=12% Similarity=0.197 Sum_probs=120.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|++|+|+.+. +...+.|+....+.++++. ++|+||+|||. ..+.+++ ++
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi---~~ 444 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL---KS 444 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH---HH
Confidence 79999999999999999999999999999998543 4455667776778888775 58999999975 6788888 56
Q ss_pred ccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhccc--ceE-----EEecCCH---HHHHHHH
Q 022834 80 VLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETG--QLV-----ILSAGEK---ALYDEAI 147 (291)
Q Consensus 80 l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g--~~~-----~~~~g~~---~~~~~~~ 147 (291)
+.. .++++++|+|++++.....+.+.+.++ .+..|+ .+|++|.... ..| ... .+++++. +..+.+.
T Consensus 445 l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~ 522 (667)
T PLN02712 445 LPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFL 522 (667)
T ss_pred HHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHH
Confidence 654 467899999999997656666665543 366788 9999997654 112 111 2233433 3345667
Q ss_pred HHHHHhccceEeeCCCChhHHHH
Q 022834 148 SALNVIGKKAFFLGEVGNGAKMK 170 (291)
Q Consensus 148 ~ll~~~g~~~~~~~~~~~a~~~k 170 (291)
++++.+|.+++.+....+...+-
T Consensus 523 ~l~~~lGa~vv~ms~eeHD~~~A 545 (667)
T PLN02712 523 DIFAREGCRMVEMSCAEHDWHAA 545 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHH
Confidence 99999999999888766665554
No 81
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.65 E-value=1.4e-14 Score=139.50 Aligned_cols=182 Identities=14% Similarity=0.170 Sum_probs=135.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHCCCc--ccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
.||+|||+|.||.+++..|.++| ++|++||+++++.+.+.+.|.. ...+..++++++|+||+|+|. ..+.+++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence 38999999999999999999998 4799999999988887777764 345677778899999999965 6788888
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh--------hcccceEEEec---CCHHHHH
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP--------AETGQLVILSA---GEKALYD 144 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~g~~~~~~~---g~~~~~~ 144 (291)
+++.+.++++.+|+++++......+.+.+.+....+.|+ .+|+.|+... ...+...+++. .+++..+
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 159 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA 159 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence 778787878889999999888777888776654455666 7888765421 12343444443 3677888
Q ss_pred HHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022834 145 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEG 187 (291)
Q Consensus 145 ~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~ 187 (291)
.+.++|+.+|.+++++++......+-+++.... .....+.|+
T Consensus 160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph-~~~~~l~~~ 201 (735)
T PRK14806 160 RVDRLWRAVGADVLHMDVAHHDEVLAATSHLPH-LLAFSLVDQ 201 (735)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHH-HHHHHHHHH
Confidence 999999999988888876555555555544432 233444444
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.65 E-value=4.6e-16 Score=121.13 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=97.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC--------------CcccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
||+|||+|+||+++|..|+++||+|++|.|+++..+.+.+.+ +.++++++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 799999999999999999999999999999999988887632 34577889999999999999976
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCC-HH----HHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecCCHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVD-HE----TSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKA 141 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 141 (291)
..+++++ +++.+++++++.++.++.+. +. ..+.+.+.+....+.++..|.+...........+.+.+.+.+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 6689999 89999998999999988774 22 234444445444455667776665555555554445554543
No 83
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.65 E-value=3.6e-16 Score=111.61 Aligned_cols=90 Identities=24% Similarity=0.425 Sum_probs=76.9
Q ss_pred eEEEEecChhhHHHHHHHHhCC---CcEEEE-cCCcchhHHHHHC-CCcccC-CHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NRTLSKCDELVAH-GATVGG-SPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g---~~V~~~-~r~~~~~~~l~~~-g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
||+|||+|+||.+|++.|.++| ++|+++ +|++++.+.+.++ +..... +..++++++|+||+|| +++++.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav-~p~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAV-KPQQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEE-CHHHHHHHH-
Confidence 7999999999999999999999 899955 9999999998755 666666 8899999999999999 668899999
Q ss_pred ccCccccccCCCcEEEEcCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++ +...+++++|+++++
T Consensus 79 --~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp --HHH-HHHHTTSEEEEESTT
T ss_pred --HHH-hhccCCCEEEEeCCC
Confidence 777 666799999988753
No 84
>PLN02712 arogenate dehydrogenase
Probab=99.63 E-value=2.2e-14 Score=134.83 Aligned_cols=170 Identities=11% Similarity=0.158 Sum_probs=125.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....+..+++ +++|+||+|||. ..+.+++ ++
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~~ 127 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---KS 127 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---Hh
Confidence 68999999999999999999999999999998543 445556877777888855 469999999964 6789888 66
Q ss_pred cc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHh--hcccceEEEec---C-CH---HHHHHHHH
Q 022834 80 VL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP--AETGQLVILSA---G-EK---ALYDEAIS 148 (291)
Q Consensus 80 l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~g~~~~~~~---g-~~---~~~~~~~~ 148 (291)
+. +.++++++|+|+++......+.+.+.+++ +..|+ .+|++|.... ...+...++.+ + +. +..+.+.+
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 206 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLE 206 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHH
Confidence 64 56778999999998887666666665543 56677 8999988632 12232223331 2 22 34567779
Q ss_pred HHHHhccceEeeCCCChhHHHHHHHHHH
Q 022834 149 ALNVIGKKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 149 ll~~~g~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
+++.+|.+++.+....+...+-.+..+.
T Consensus 207 l~~~lGa~v~~ms~eeHD~~~A~vshLp 234 (667)
T PLN02712 207 VFEREGCKMVEMSCTEHDKYAAESQFIT 234 (667)
T ss_pred HHHHcCCEEEEeCHHHHHHHHHHHHHHH
Confidence 9999999999887766666665555443
No 85
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=9.6e-15 Score=125.91 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=130.8
Q ss_pred hhHHHHHHHHhCCCcEEEEcCCcchh-------HH-----------HHHCC-------------CcccCC--HHHHHhhC
Q 022834 11 MGKAISMNLLRNGFKVTVWNRTLSKC-------DE-----------LVAHG-------------ATVGGS--PAEVIKKC 57 (291)
Q Consensus 11 mG~~la~~l~~~g~~V~~~~r~~~~~-------~~-----------l~~~g-------------~~~~~~--~~~~~~~~ 57 (291)
||..||..++.+|++|+++|++++.. +. +.+.| ++...+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 89999999999999999999998531 11 11122 233333 55778999
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh----cCCcEEEcccCCChHhhcccceE
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLV 133 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~ 133 (291)
|+||.|+|.+..++..+| .++.+.+++++++. ||.++....++.+.+.. .|.+|...| ... +++
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp-----~~~---~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPA-----YLM---PLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCcc-----ccC---ceE
Confidence 999999999999999888 55778888888875 55555455666665532 244554444 111 222
Q ss_pred EEec---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 022834 134 ILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI 210 (291)
Q Consensus 134 ~~~~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~ 210 (291)
-+++ ++++.++.+.++++.+|+.++++++.+ + +++.......++|++.++++.+++++++.+++..+.+
T Consensus 149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3333 388999999999999999999998743 2 2344566789999999999999999999999886654
No 86
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.61 E-value=6.1e-14 Score=118.66 Aligned_cols=252 Identities=18% Similarity=0.221 Sum_probs=160.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~ 56 (291)
+||+|||+|-||..||..++..|++|+++|++++.+++... .| +....+.. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 58999999999999999999988999999999776554322 22 22233333 5789
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+||.+++....++.-+| .++....++++++-+.+++.|.+ ++.+.. ++.-.++....+.++.. -+++-++
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it--~ia~~~-~rper~iG~HFfNP~~~---m~LVEvI 154 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSIT--ELAEAL-KRPERFIGLHFFNPVPL---MPLVEVI 154 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHH--HHHHHh-CCchhEEEEeccCCCCc---ceeEEEe
Confidence 9999999999999988776 67778887888877655554432 344333 22223555444443332 2344455
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN 212 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s 212 (291)
.| +++.++.+.++.+.+|+.++...+ +| ++.|-+ ....+.|+..+..+-..+++++-.+++.+.+..
T Consensus 155 ~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRi---l~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p 225 (307)
T COG1250 155 RGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRL---LAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP 225 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC
Confidence 55 788999999999999988766555 44 333432 457788898888887799999999888764432
Q ss_pred ccccccccccccCCCCCCcccccHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHCCCCCCcHHH
Q 022834 213 PMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGD--ENAVSMPIAAAANEAFKKARSLGLGDNDFSA 279 (291)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~--~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~ 279 (291)
+ +|. ...|+. | ++.+.+-+..+.+... ..-.+.|+++.+.+.-......|.|..||..
T Consensus 226 -m----Gpf-~l~D~~-G--lD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 226 -M----GPF-ELADLI-G--LDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred -c----cHH-HHHHHH-h--HHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 1 110 001111 1 2223333333332121 1223456666666555556667778888774
No 87
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.60 E-value=7.2e-14 Score=122.08 Aligned_cols=163 Identities=12% Similarity=0.195 Sum_probs=124.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++|+|||. |.||..++..|.+. +++|+++|++.+ ...++.+.+++||+||+|+|- ..+.+++ +
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l---~ 69 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALI---E 69 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHH---H
Confidence 58999999 99999999999964 889999998522 124667788899999999966 6678888 6
Q ss_pred ccccc---cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCCh-HhhcccceEEEecC-CHHHHHHHHHHHHH
Q 022834 79 GVLEQ---ICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSK-QPAETGQLVILSAG-EKALYDEAISALNV 152 (291)
Q Consensus 79 ~l~~~---l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~g-~~~~~~~~~~ll~~ 152 (291)
++.+. ++++++|.|+++......+.+. ..+..|+ .+|++|.. .....+...+++.+ ..+..+.++++++.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~ 145 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSA 145 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHH
Confidence 67654 7899999999999876655553 2345688 89999985 34446776666665 34446789999999
Q ss_pred hccceEeeCCCChhHHHHHHHHHHHHHHHH
Q 022834 153 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 182 (291)
Q Consensus 153 ~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~ 182 (291)
+|.+++.++...+...+..++.+....++.
T Consensus 146 ~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 146 LQAECVYATPEHHDRVMALVQAMVHATHLA 175 (370)
T ss_pred cCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888887776544434333
No 88
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.59 E-value=1.8e-13 Score=117.36 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=122.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchh-HHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
++|+|||+|+||.+++.+|...|++|++++++.++. +...+.|.... +..++++++|+|++++|+.. ...++. ++
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~-~~~V~~--~~ 93 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV-QAEVYE--EE 93 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH-HHHHHH--HH
Confidence 489999999999999999999999999987765544 33445577655 88899999999999997654 477763 35
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChH-h----hcccceEEE-ecCC--HHHHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQ-P----AETGQLVIL-SAGE--KALYDEAISAL 150 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~----~~~g~~~~~-~~g~--~~~~~~~~~ll 150 (291)
+.+.++++++|+. +.+.+... ....+ ..++.++ .+|-..+.. . ...|-..++ +..+ .+..+.+..++
T Consensus 94 I~~~Lk~g~iL~~-a~G~~i~~--~~~~p-~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~ 169 (330)
T PRK05479 94 IEPNLKEGAALAF-AHGFNIHF--GQIVP-PADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYA 169 (330)
T ss_pred HHhcCCCCCEEEE-CCCCChhh--ceecc-CCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 7778888888754 44432221 11112 2244444 555222110 0 122323233 3443 77889999999
Q ss_pred HHhccceE-eeCC-CChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 022834 151 NVIGKKAF-FLGE-VGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTL 201 (291)
Q Consensus 151 ~~~g~~~~-~~~~-~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~~ 201 (291)
+.+|.... ++.. +....-.-+. ..++......++..+.+++...|++|+..
T Consensus 170 ~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 170 KGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred HHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99997743 1111 1111100111 23344455678888888899999999743
No 89
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.57 E-value=2.5e-15 Score=111.26 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=72.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEE-EcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|||+|||+|++|..|+..|.++||+|.. |+|++++.+.+... +.....+..++++++|++|++||+ ..+.++. +
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va---~ 86 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA---E 86 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH---H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH---H
Confidence 6999999999999999999999999875 58988777777654 444455777888999999999988 5799999 7
Q ss_pred ccccc--cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 79 GVLEQ--ICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 79 ~l~~~--l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
++... ..++++|+++|...+.. +.+.+.+.|..
T Consensus 87 ~La~~~~~~~g~iVvHtSGa~~~~---vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSGALGSD---VLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES-SS--GG---GGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECCCCChHH---hhhhHHHCCCe
Confidence 77765 67899999999875543 22334455553
No 90
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.56 E-value=1.7e-14 Score=114.68 Aligned_cols=151 Identities=17% Similarity=0.259 Sum_probs=100.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------C-------------CCcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..+|..++.+|++|++||++++.++...+ . .+...++.+++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 7999999999999999999999999999999987654322 1 245577888877 99
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+..++++++...|++.+. .++...+.. .-.++....+.++... +++-++.
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~-p~R~ig~Hf~~P~~~~---~lVEvv~ 151 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSI--SELAAALSR-PERFIGMHFFNPPHLM---PLVEVVP 151 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-H--HHHHTTSST-GGGEEEEEE-SSTTT-----EEEEEE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCH--HHHHhccCc-CceEEEEecccccccC---ceEEEeC
Confidence 999999999888888666 6788888888888876666543 334433321 2235544433323221 2333433
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeC
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLG 161 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~ 161 (291)
+ +++..+.+..+++.+|+.++.+.
T Consensus 152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 152 GPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp -TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 3 78899999999999999888764
No 91
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.55 E-value=3e-13 Score=116.19 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=120.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcC-CcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+||+|||+|+||.+++.+|.++|++|+++++ ++++.+.+.+.|+... +..++++++|+|++++|+..+...+. ++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~e 79 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AE 79 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HH
Confidence 5899999999999999999999999887654 4455666667787754 57888899999999997754666666 56
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhh------cccceEEE-ecC--CHHHHHHHHHH
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPA------ETGQLVIL-SAG--EKALYDEAISA 149 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~g~~~~~-~~g--~~~~~~~~~~l 149 (291)
+.+.++++. +|..+.+.+. ..+...++. +..++ .+|-..... . ..|-..++ +.. +.+..+.+..+
T Consensus 80 i~~~l~~g~-iVs~aaG~~i--~~~~~~~~~-~~~VvrvmPn~p~~~-vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFNI--HFVQIVPPK-DVDVVMVAPKGPGTL-VREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHhhCCCCc-EEEEeCCccH--hhccccCCC-CCcEEEECCCCCcHH-HHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 777776665 6666666442 333333433 33344 666222111 1 23332333 222 56778899999
Q ss_pred HHHhccc-------e---EeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 150 LNVIGKK-------A---FFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 150 l~~~g~~-------~---~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
++.+|.. . ..-.+ .+...+ ++..... .+..+.|+ +.+.|++++..+.++...
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t~--l~Gs~pa--~v~~~~ea---lv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQAV--LCGGLTA--LIKAGFDT---LVEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcchh--HHhHHHH--HHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 9999977 2 11112 222222 2222211 12222244 478999999888776643
No 92
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.54 E-value=1.7e-13 Score=114.40 Aligned_cols=225 Identities=15% Similarity=0.198 Sum_probs=153.0
Q ss_pred CCcEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHH
Q 022834 23 GFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS 101 (291)
Q Consensus 23 g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~ 101 (291)
.++|++++|++++++.+.+. |+....+..++++++|+||+|| +|+++++++ +++.+.+.++++||+++.+.+ .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaV-kP~~i~~vl---~~l~~~~~~~~~ivS~~agi~--~ 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAV-KPQDLEEVL---SELKSEKGKDKLLISIAAGVT--L 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEe-CHHHHHHHH---HHHhhhccCCCEEEEecCCCC--H
Confidence 36899999999998888665 8888888889989999999999 589999999 777766667789998877754 3
Q ss_pred HHHHHHHHhcCCcEE-EcccCCChHhhcccceEE-EecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHH
Q 022834 102 IKISRAITSKGGHFL-EAPVSGSKQPAETGQLVI-LSAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNM 175 (291)
Q Consensus 102 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~ 175 (291)
+.+.+.+... ..++ .+| +.....++.+. ++.+ +++..+.++++|+.+|..++.-.+ +.....+--+...
T Consensus 83 ~~l~~~~~~~-~~ivR~mP----n~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA 157 (245)
T TIGR00112 83 EKLSQLLGGT-RRVVRVMP----NTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPA 157 (245)
T ss_pred HHHHHHcCCC-CeEEEECC----ChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHH
Confidence 5565555422 2233 666 44444433322 3333 456678999999999977655433 5555555556677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-ccccc--ccc-ccccCCCCCCcccccHHHHHHHHHHHHhhcC
Q 022834 176 IMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PMFKG--KGP-TMLQSNYAPAFPLKHQQKDMRLALALGDENA 251 (291)
Q Consensus 176 ~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s-~~~~~--~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g 251 (291)
+.+.++..+.++ +.+.|+++++..+++..+...+ .++.. ..+ .+.+.-.+||.+.. ..++..++.|
T Consensus 158 ~~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~-------~gl~~Le~~~ 227 (245)
T TIGR00112 158 YVFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTI-------AGLAVLEEKG 227 (245)
T ss_pred HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHH-------HHHHHHHHCC
Confidence 766666666666 8889999999999888653222 22221 122 33444445665443 3555666788
Q ss_pred CCchHHHHHHHHHHHHH
Q 022834 252 VSMPIAAAANEAFKKAR 268 (291)
Q Consensus 252 ~~~p~~~~~~~~~~~~~ 268 (291)
+.--+.+++.+.++++.
T Consensus 228 ~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 228 VRGAVIEAVEAAVRRSR 244 (245)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 88888888877776653
No 93
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.50 E-value=1.9e-12 Score=123.01 Aligned_cols=187 Identities=15% Similarity=0.125 Sum_probs=130.8
Q ss_pred eEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHH-----------HC-------------CCcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AH-------------GATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~-----------~~-------------g~~~~~~~~~~~~~ 56 (291)
||+|||+|.||..||..++ .+|++|+++|++++.++... +. .++..++. +.+++
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 384 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKD 384 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhcc
Confidence 7999999999999999998 58999999999988655432 11 23345555 45689
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEe
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 136 (291)
||+||.|+|....++.-+| .++.+..++++++...|++.+. .++.+.+.. .-.++....+.++.. -+++-++
T Consensus 385 adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~-p~r~~g~HffnP~~~---~~lVEvv 456 (699)
T TIGR02440 385 VDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASR-PENVIGLHYFSPVEK---MPLVEVI 456 (699)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCC-cccEEEEecCCcccc---CceEEEe
Confidence 9999999999988888666 6788888888888866655443 334443322 223554433332222 2334444
Q ss_pred cC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 137 AG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 137 ~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
.+ +++.++.+..++..+|+.++.+.+ ..+ ++.|= .....+.|+..+.+ .|++++++-.++.
T Consensus 457 ~g~~T~~~~~~~~~~~~~~~gk~pv~v~d-~pG----fi~nR---l~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 457 PHAGTSEQTIATTVALAKKQGKTPIVVAD-KAG----FYVNR---ILAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEcc-ccc----hHHHH---HHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 43 788999999999999999998876 222 22232 24567889988876 6789988877764
No 94
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.50 E-value=3.8e-12 Score=107.20 Aligned_cols=166 Identities=15% Similarity=0.214 Sum_probs=121.9
Q ss_pred HHHHHHhCC--CcEEEEcCCcchhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEE
Q 022834 15 ISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI 91 (291)
Q Consensus 15 la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv 91 (291)
+|+.|.++| ++|+.||++++..+...+.|+.... +..+.++++|+||+|||- ..+.+++ +++.+.++++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence 578899998 6789999999988887777765432 225778999999999965 6688888 88889898999999
Q ss_pred EcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC--------hHhhcccceEEEecC---CHHHHHHHHHHHHHhccceEe
Q 022834 92 DMSTVDHETSIKISRAITSKGGHFL-EAPVSGS--------KQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFF 159 (291)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~ 159 (291)
|++++.....+.+.+.++ .+..|+ .+|++|+ ......|...+++.. +.+.++.+.++++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888888887766 567888 8899998 334446777777754 457889999999999999998
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHH
Q 022834 160 LGEVGNGAKMKLVVNMIMGCMMNTFS 185 (291)
Q Consensus 160 ~~~~~~a~~~k~~~n~~~~~~~~~~~ 185 (291)
++...+...+..++.+......++..
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87778888887877765554444444
No 95
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.49 E-value=1.1e-12 Score=105.98 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=170.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC----cEEEEcCCcchhHH-HHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|+||+||+|.|..++++.+.+.|. ++..+..+...... +...|+..+.+..+.++.+|++++++ ++..+++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 899999999999999999999884 56666664333344 66678887777788889999999999 889999999
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccceEEEecC--CHHHHHHHHHHHHH
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNV 152 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~~~ll~~ 152 (291)
.++...+..+++++.+-.+. +...+...+.. ...++ .+| ..|.....|..++..+. ..+..+.++++++.
T Consensus 79 --s~~~~~~~~~~iivS~aaG~--tl~~l~~~l~~-~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~ 151 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGK--TLSSLESKLSP-PTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLELVEELLSA 151 (267)
T ss_pred --hcCccccccceEEEEEeecc--cHHHHHHhcCC-CCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHHHHHHHHh
Confidence 77877677889999665553 34455555542 12233 444 22344445544332222 45666889999999
Q ss_pred hccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCccc--ccccccccccCCC-
Q 022834 153 IGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPM--FKGKGPTMLQSNY- 227 (291)
Q Consensus 153 ~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~-~~s~~--~~~~~~~~~~~~~- 227 (291)
.|+....-.+ +.....+-=....+.++++..+++. +-+.|++++..+++..++- +...| ....+|-.++.+.
T Consensus 152 vG~~~evpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~ 228 (267)
T KOG3124|consen 152 VGLCEEVPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC 228 (267)
T ss_pred cCcceeCcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence 9976433332 3333333333455666666667666 7789999999988887652 22222 2223555555554
Q ss_pred CCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHC
Q 022834 228 APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL 270 (291)
Q Consensus 228 ~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~ 270 (291)
+|+.+.. +.++..++-|++.-++.++.+.-.++++-
T Consensus 229 SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el 264 (267)
T KOG3124|consen 229 SPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRAREL 264 (267)
T ss_pred CCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHh
Confidence 6765433 45667778899999999998888887764
No 96
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.48 E-value=3.7e-12 Score=121.40 Aligned_cols=187 Identities=15% Similarity=0.138 Sum_probs=131.8
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~ 55 (291)
.||+|||+|.||..||..++ .+|++|+++|++++.++...+ .| ++.+++. +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 37999999999999999999 889999999999886554211 11 3344555 4568
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEE
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVIL 135 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 135 (291)
+||+||.|+|....++.-+| .++.+..++++++...|++.+. .++.+.+.. .-.++....+.++... +++-+
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~-p~r~ig~Hff~P~~~~---~lVEv 460 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAAR-PEQVIGLHYFSPVEKM---PLVEV 460 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCc-ccceEEEecCCccccC---ceEEE
Confidence 99999999999888888776 6788888888888876666443 334443322 2235544444333222 33444
Q ss_pred ecC---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 022834 136 SAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD 206 (291)
Q Consensus 136 ~~g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~ 206 (291)
+.+ +++..+.+..++..+|+.++.+.+ +| ++.|= ....++.|+..+.++ |++++++-.++.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nR---l~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNR---ILAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHH---HHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 443 788999999999999999888865 33 22232 245778899888775 788888877765
No 97
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.47 E-value=4e-12 Score=121.18 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=130.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-----------HCC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..++.+||+|+++|++++.++... +.| ++.+.+. +.+++|
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERV 393 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 799999999999999999999999999999988765421 112 3445555 446899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+.+++++++...|++.|. .++.+.+.. .-.++....+.++... +++-++.
T Consensus 394 DlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~-p~r~~g~Hff~P~~~~---~lVEvv~ 465 (715)
T PRK11730 394 DVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEVIR 465 (715)
T ss_pred CEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCC-CccEEEEecCCccccc---ceEEeeC
Confidence 999999999988888776 6788888888888766665543 334443322 2235544433333222 2333444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 207 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~ 207 (291)
+ +++.++.+..++..+|+.++.+.+ +| ++.|=+ ....+.|+..+.++ |.+++++-.++..
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi---~~~~~~ea~~lv~~-Ga~~e~ID~a~~~ 529 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRV---LFPYFAGFSQLLRD-GADFRQIDKVMEK 529 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHH---HHHHHHHHHHHHHc-CCCHHHHHHHHHh
Confidence 3 788999999999999999998876 43 333322 23456787777654 4788877776654
No 98
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.45 E-value=4e-12 Score=120.92 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=133.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC-------------CcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~ 57 (291)
||+|||+|.||..||..++.+|++|+++|++++.+++..+ .| ++.+.+. +.+++|
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNV 393 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 7999999999999999999999999999999887654321 11 3344555 446899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+..++++++...|+..+. .++...+. +.-.++....+.++.. -+++-++.
T Consensus 394 DlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~-~p~r~ig~Hff~P~~~---~~lvEvv~ 465 (714)
T TIGR02437 394 DIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALK-RPENFCGMHFFNPVHR---MPLVEVIR 465 (714)
T ss_pred CEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcC-CcccEEEEecCCCccc---CceEeecC
Confidence 999999999998888776 6788888888888866655443 33444332 2233554443332222 23344444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG 208 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~ 208 (291)
+ +++.++.+.+++..+|+.++.+.+ +| ++.|=+ ....+.|+..+.+ .|.+++++-.++..+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl---~~~~~~ea~~l~~-eG~~~~~ID~a~~~~ 530 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRV---LFPYFGGFSKLLR-DGADFVRIDKVMEKQ 530 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 4 688899999999999999998876 43 333433 3456778888865 568888888777653
No 99
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.43 E-value=3.9e-12 Score=106.38 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=120.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+|||||.|.||..+|..|.++||.|...+|+. ...+++ .|....+.+.+++ +.+|+|++|| ...+++.++ ..
T Consensus 54 ~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekil---at 127 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKIL---AT 127 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHH---Hh
Confidence 79999999999999999999999999999964 444444 4777778888876 4699999999 778899999 55
Q ss_pred cccc-cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhcccc-eEEE----ecC----CHHHHHHHHH
Q 022834 80 VLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQ-LVIL----SAG----EKALYDEAIS 148 (291)
Q Consensus 80 l~~~-l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~----~~g----~~~~~~~~~~ 148 (291)
..+. ++.++++++..++.....+.+.+++++ .+.++ .+|++|+.......+ ++++ -.| .++.++.+.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 5554 778999999988877777778888876 46666 788999874544443 1222 123 3788999999
Q ss_pred HHHHhccceEeeC
Q 022834 149 ALNVIGKKAFFLG 161 (291)
Q Consensus 149 ll~~~g~~~~~~~ 161 (291)
+|.+.|.+.++++
T Consensus 207 If~cegckmVemS 219 (480)
T KOG2380|consen 207 IFACEGCKMVEMS 219 (480)
T ss_pred HHHhcCCeEEEEE
Confidence 9999998877654
No 100
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.42 E-value=8.5e-13 Score=104.29 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=155.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC------------------CcccCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~~ 52 (291)
+++|||+|.||+.||..-+.+|++|+++|++.+.+.+..+ ++ ++..++..+
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~ 92 (298)
T KOG2304|consen 13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSD 92 (298)
T ss_pred ceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHH
Confidence 5899999999999999999999999999999877654322 11 344677888
Q ss_pred HHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc----CCcEE-EcccCCChHhh
Q 022834 53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFL-EAPVSGSKQPA 127 (291)
Q Consensus 53 ~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~ 127 (291)
++.++|+||.++-.+..++.-+| +++....++.+++...+++ -....+...+... |.+|. ..|+..
T Consensus 93 ~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~tNTSS--l~lt~ia~~~~~~srf~GlHFfNPvPvMK----- 163 (298)
T KOG2304|consen 93 AVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILATNTSS--LSLTDIASATQRPSRFAGLHFFNPVPVMK----- 163 (298)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEeecccc--eeHHHHHhhccChhhhceeeccCCchhHH-----
Confidence 88899999999877777777666 5666666566666543332 2233343332221 45554 223211
Q ss_pred cccceEEEec---CCHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 022834 128 ETGQLVILSA---GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD 203 (291)
Q Consensus 128 ~~g~~~~~~~---g~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~ 203 (291)
++-++. .+++.+..+..+-+.+|+..+.+.+ +| ++.|= ..+-.+.|+.++.++-..+.+.+-.
T Consensus 164 ----LvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNR---lLiPyl~ea~r~yerGdAskeDIDt 230 (298)
T KOG2304|consen 164 ----LVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPG------FIVNR---LLIPYLMEAIRMYERGDASKEDIDT 230 (298)
T ss_pred ----HhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhH---HHHHHHHHHHHHHHhcCCcHhhHHH
Confidence 111222 2688899999999999999998887 55 34342 2456788999999999999999988
Q ss_pred HHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHHHH-H-HhhcCCCchHHHHHHHHHHHHHHCCCCCCcH
Q 022834 204 VLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALA-L-GDENAVSMPIAAAANEAFKKARSLGLGDNDF 277 (291)
Q Consensus 204 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~-a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~ 277 (291)
.+..++++ ||- |. ---||.. ++...--+.-..+ . ....-.|.|+++.+.+--+..+..|.|..+|
T Consensus 231 aMklGagy-PMG----Pf-EL~DyvG---LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y 297 (298)
T KOG2304|consen 231 AMKLGAGY-PMG----PF-ELADYVG---LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY 297 (298)
T ss_pred HHhccCCC-CCC----hH-HHHHHhh---HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence 88887654 221 10 0011110 1100000110111 1 1233467898888777766666666665544
No 101
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.41 E-value=6.9e-12 Score=119.61 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=127.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------C-------------CCcccCCHHHHHhhC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~~ 57 (291)
+|+|||+|.||..|+..++.+|++|+++|++++.+++..+ . .++.+.+.+ .+++|
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 415 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNA 415 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 7999999999999999999999999999999987665321 1 134455554 56899
Q ss_pred CEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec
Q 022834 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (291)
Q Consensus 58 dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (291)
|+||.|+|....++.-+| .++.+.+++++++...|+..+. ..+.+.+.. .-.++....+.++.. -+++-++.
T Consensus 416 DlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~-p~r~ig~Hff~P~~~---m~LvEvv~ 487 (737)
T TIGR02441 416 DMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPI--KDIAAVSSR-PEKVIGMHYFSPVDK---MQLLEIIT 487 (737)
T ss_pred CeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCC-ccceEEEeccCCccc---CceEEEeC
Confidence 999999999998888776 6788888888888765555433 334443322 223554443332222 23333444
Q ss_pred C---CHHHHHHHHHHHHHhccceEeeCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 022834 138 G---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL 205 (291)
Q Consensus 138 g---~~~~~~~~~~ll~~~g~~~~~~~~-~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~ 205 (291)
+ +++.++.+..++..+|+.++.+.+ .| ++.|=+ ....+.|+..+.+ .|++++++-.++
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi---~~~~~~ea~~lv~-eGv~~~~ID~a~ 549 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRC---LGPMLAEVIRLLQ-EGVDPKKLDKLT 549 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHH---HHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 3 788999999999999999998876 44 333322 2466777777754 467777766654
No 102
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.40 E-value=3e-11 Score=100.20 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=169.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (291)
+||+-||+|.+|..-..-++.+ ..+|+++|.+..+...+.. .+..+.++.+..++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 5899999999999988877653 2468899998887765433 234567788889999999
Q ss_pred EEEecCCHH--------------HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc--CCcE--EEcccC
Q 022834 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHF--LEAPVS 121 (291)
Q Consensus 60 vii~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~--~~~~--~~~~~~ 121 (291)
||+.|-+|. ..++.. .-+.......++++.-|++.....+.+...+... |+.| +..|.+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~a---r~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpef 158 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAA---RMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEF 158 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHH---HHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHH
Confidence 999985443 344444 3444555577899999999888888888877533 4433 344422
Q ss_pred ---CChHhhcccceEEEecC--CHHHH---HHHHHHHHHhccce-EeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022834 122 ---GSKQPAETGQLVILSAG--EKALY---DEAISALNVIGKKA-FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE 192 (291)
Q Consensus 122 ---~~~~~~~~g~~~~~~~g--~~~~~---~~~~~ll~~~g~~~-~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~ 192 (291)
|.....-..+-.+++|| .++-+ +.+..+.+.+-.+- ++....-+++..|+..|.+.+--+..++-..++|+
T Consensus 159 laegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salce 238 (481)
T KOG2666|consen 159 LAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCE 238 (481)
T ss_pred hcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 22222112222356666 33333 44455556554332 34445789999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcC-CCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCC
Q 022834 193 KSGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS 253 (291)
Q Consensus 193 ~~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~ 253 (291)
+-|.+..++...+.... ..+.++ +-+.||...+.+||+-.++..++.+|+|
T Consensus 239 atgadv~eva~avg~d~rig~kfl----------~asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 239 ATGADVSEVAYAVGTDSRIGSKFL----------NASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred hcCCCHHHHHHHhcccccccHHHh----------hcccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 99999999888877543 232222 2345888899999999999999999875
No 103
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.38 E-value=9.5e-11 Score=94.48 Aligned_cols=191 Identities=15% Similarity=0.203 Sum_probs=137.0
Q ss_pred CeEEEEecChh--------------------hHHHHHHHHhCCCcEEEEcCCcc-----hhHHHHHCCCcccCCHHHHHh
Q 022834 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (291)
Q Consensus 1 mkI~iIG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 55 (291)
|||+|+|+|+- |..||..++++||+|.+.++|.+ +.+++.+.|+.++++..++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 89999999986 88899999999999999987644 345566779999999999999
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHH-HHHHHHHHHhc----CCc-EEEcccCCChHhhcc
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHET-SIKISRAITSK----GGH-FLEAPVSGSKQPAET 129 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~ 129 (291)
..++.++.+|...+.-.+. +.+.++++.|.+|++++|.+|.- ...++..++.. |+. +..+.+.|.+...
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~-- 156 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHG-- 156 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCc--
Confidence 9999999999987888888 78899999999999999987753 33333333322 332 2244455555432
Q ss_pred cceEEEec--------CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH
Q 022834 130 GQLVILSA--------GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPR 199 (291)
Q Consensus 130 g~~~~~~~--------g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~-~~g~~~~ 199 (291)
..++.+ .++++.+++.++.+..|+.++.+. ...-..+.-...++.......+.+-+.+.. -.|.+.+
T Consensus 157 --~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p-adv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~e 232 (340)
T COG4007 157 --HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP-ADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKE 232 (340)
T ss_pred --eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 112221 167889999999999999988775 343344444455555566666666666655 2555554
No 104
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.31 E-value=1.2e-10 Score=98.72 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=117.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.+|+|||+|+||.++|.+|...|++|++|++.....+.....|..+. ++++++++||+|++++|++.+ ..++. +++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t-~~V~~--~ei 92 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEV 92 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHH-HHHHH--HHH
Confidence 37999999999999999999999999999876544445555677654 899999999999999998554 67773 467
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Eccc-CCChHhh----cccceEEEe-cC--CHHHHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPV-SGSKQPA----ETGQLVILS-AG--EKALYDEAISALN 151 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----~~g~~~~~~-~g--~~~~~~~~~~ll~ 151 (291)
.+.++++++++ .|-+.......+ .+..++.++ -+|- .|+.... ..|-..++. -. +..+.+.......
T Consensus 93 l~~MK~GaiL~-f~hgfni~~~~i---~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~ 168 (335)
T PRK13403 93 EENLREGQMLL-FSHGFNIHFGQI---NPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAK 168 (335)
T ss_pred HhcCCCCCEEE-ECCCcceecCce---eCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHH
Confidence 88888887655 455533322222 223345444 5553 2322221 112222221 11 3345667777778
Q ss_pred Hhccce--EeeCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 152 VIGKKA--FFLGEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 152 ~~g~~~--~~~~~~~~a~~~k~~--~n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
.+|..- ++-.......-..++ +..+..+...++.-+.+.+.+.|.+|+.
T Consensus 169 ~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~ 221 (335)
T PRK13403 169 GVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI 221 (335)
T ss_pred HcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 887552 111112222222222 1123334456666667778889998874
No 105
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.28 E-value=6e-11 Score=99.58 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=156.5
Q ss_pred eEEEEecChhhHHHHHHHHhC--CC-----cEEEEcCCcch---hHHHHH------------------CCCcccCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GF-----KVTVWNRTLSK---CDELVA------------------HGATVGGSPAEV 53 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~-----~V~~~~r~~~~---~~~l~~------------------~g~~~~~~~~~~ 53 (291)
||+|||.|+||+++++.+.++ ++ +|..|-+..+. .+.+.+ .++...+|+.++
T Consensus 23 kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea 102 (372)
T KOG2711|consen 23 KVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEA 102 (372)
T ss_pred EEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHH
Confidence 799999999999999999873 22 47777543221 122322 124457789999
Q ss_pred HhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHH-----HHHHHHHHHHhc---CCcEEEcccCCChH
Q 022834 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHE-----TSIKISRAITSK---GGHFLEAPVSGSKQ 125 (291)
Q Consensus 54 ~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~ 125 (291)
++++|+++..+|. +.+.+++ +++...++++...|+++.+... ...-+.+.+.+. .+.++..|-+....
T Consensus 103 ~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EV 178 (372)
T KOG2711|consen 103 AKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEV 178 (372)
T ss_pred hccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHH
Confidence 9999999999977 6789999 8999999999998988876321 133344444433 23344444222222
Q ss_pred hhcccceEEEecC-CHHHHHHHHHHHHHhccceEeeCCC-Ch--hHHHH--------------HHHHHHHHHHHHHHHHH
Q 022834 126 PAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEV-GN--GAKMK--------------LVVNMIMGCMMNTFSEG 187 (291)
Q Consensus 126 ~~~~g~~~~~~~g-~~~~~~~~~~ll~~~g~~~~~~~~~-~~--a~~~k--------------~~~n~~~~~~~~~~~E~ 187 (291)
....-.-+.+... ..+.-..+..+|+.-.+.++...+. +. ..++| +..|.-.+.+...+.|.
T Consensus 179 a~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em 258 (372)
T KOG2711|consen 179 ANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEM 258 (372)
T ss_pred HhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHH
Confidence 2222222223333 2333335888888888877776662 21 12222 23445555566677777
Q ss_pred HHHHHH-cCC-CHHHHHHHHhhc-------CCCcccccccccccccCC---------CCCCcccccHHHHHHHHHHHHhh
Q 022834 188 LVLAEK-SGL-DPRTLLDVLDLG-------GIANPMFKGKGPTMLQSN---------YAPAFPLKHQQKDMRLALALGDE 249 (291)
Q Consensus 188 ~~~~~~-~g~-~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~~~~~a~~ 249 (291)
+.++.. ..- .++++++....+ .+.+.. ..+.+.++. ...|. .-....-.+.+.++.++
T Consensus 259 ~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~---~aeafaktgk~~~~~E~ell~Gq-~~QG~~Ta~~Vy~~L~~ 334 (372)
T KOG2711|consen 259 IKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRK---VAEAFAKTGKSLEELEKELLNGQ-KLQGPATAKEVYELLQK 334 (372)
T ss_pred HHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHH---HHHHHHHcCCCHHHHHHHhhCCC-cccCcHHHHHHHHHHHH
Confidence 777665 122 333333322111 111111 111111110 01111 11123335677888888
Q ss_pred cCC--CchHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHhhh
Q 022834 250 NAV--SMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 288 (291)
Q Consensus 250 ~g~--~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 288 (291)
.+. ..|++.++++... ++....++++.++++.
T Consensus 335 ~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~~ 368 (372)
T KOG2711|consen 335 KGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNHP 368 (372)
T ss_pred cChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhccc
Confidence 888 7999999887764 4457788888887654
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=99.28 E-value=4.2e-11 Score=105.45 Aligned_cols=111 Identities=18% Similarity=0.124 Sum_probs=93.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|+||..+++.|..-|.+|.+|||+....+...+.|+....++++++++||+|++++|...+++.++- ++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 270 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADV 270 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHH
Confidence 589999999999999999999999999999986444434445666667899999999999999998888888872 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.....+.+.+.+....+
T Consensus 271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i 303 (385)
T PRK07574 271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHL 303 (385)
T ss_pred HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc
Confidence 677889999999999998888888888876533
No 107
>PLN03139 formate dehydrogenase; Provisional
Probab=99.27 E-value=5.7e-11 Score=104.57 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=93.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|+||..+++.|..-|.+|.+||++....+...+.|+....+.++++++||+|++++|...+.+.++- ++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 277 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KER 277 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHH
Confidence 489999999999999999999999999999986544444455777677999999999999999999888888872 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+....+
T Consensus 278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCc
Confidence 777889999999999998888888888876533
No 108
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.26 E-value=7.7e-10 Score=88.58 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=93.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|||+|||. |.||..++..|.++||.|+ +.+||+||+|+|- ..+.+++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHH---HH
Confidence 89999988 9999999999999999986 2589999999966 5567777 44
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhhccc--ceEEEec--CCHHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETG--QLVILSA--GEKALYDEAISALNVIG 154 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g--~~~~~~~--g~~~~~~~~~~ll~~~g 154 (291)
+. .+++|.++......+ ....|+ .+|++|... ...+ ...+++. .+++..+.++++++ |
T Consensus 51 ~~------~~v~Dv~SvK~~i~~--------~~~~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G 113 (197)
T PRK06444 51 YD------NNFVEISSVKWPFKK--------YSGKIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR--G 113 (197)
T ss_pred hC------CeEEeccccCHHHHH--------hcCCEEecCCCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--C
Confidence 33 378999988764221 134688 889998443 2221 2333332 24566778899988 7
Q ss_pred cceEeeCCCChhHHHHHHHHHH
Q 022834 155 KKAFFLGEVGNGAKMKLVVNMI 176 (291)
Q Consensus 155 ~~~~~~~~~~~a~~~k~~~n~~ 176 (291)
.+++.+....+...+-.++.+.
T Consensus 114 ~~~~~~t~eeHD~~~A~ishLp 135 (197)
T PRK06444 114 YHFVEMTADEHDLLMSEIMVKP 135 (197)
T ss_pred CEEEEeCHHHHHHHHHHHHHHH
Confidence 7888887777777777776654
No 109
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.25 E-value=4.3e-11 Score=103.99 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=86.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+|||||+|.||..+|..|...|++|++||++++.... ......+.++++++||+|++++|...+...++. +++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~ 220 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAM 220 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHH
Confidence 68999999999999999999999999999998764332 223456889999999999999998877776663 466
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
.+.++++.++|+++-+.......+.+.+.+.
T Consensus 221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 221 FDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred HhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 6778899999999998777777787777654
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.24 E-value=1.6e-11 Score=95.46 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=84.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CC----cccCCHHHHHhhCCEEEEecCCHHH-HHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GA----TVGGSPAEVIKKCTITIGMLADPAA-ALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~----~~~~~~~~~~~~~dvvii~vp~~~~-~~~v 73 (291)
++|+|+|+|.||..++..|.+.| ++|++++|++++.+.+.+. +. ....+..+.++++|+||.|+|.+.+ .+.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 47999999999999999999986 7899999999888776654 32 2345666777899999999988654 3333
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+. ...++++++++|+++..+.+ .+.+.+.+.|..+++.
T Consensus 100 ~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 100 PLP----PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred CCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 321 12356899999998885543 6767777778877744
No 111
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.20 E-value=8.3e-11 Score=102.47 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=88.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+|+.|...|.+|.+|||++... .....+... .+.++++++||+|++++|...+.+.++. ++.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~ 226 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMIN--EER 226 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccC--HHH
Confidence 489999999999999999999999999999986543 223335443 4789999999999999998888887773 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++.+.....+.+.+.+.+.
T Consensus 227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 227 LKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred HhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 6778899999999999888888888877654
No 112
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.17 E-value=4.3e-11 Score=92.67 Aligned_cols=102 Identities=14% Similarity=0.238 Sum_probs=79.6
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC--------------CHHHHHhhCCEEEEecCCHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------SPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------~~~~~~~~~dvvii~vp~~~ 68 (291)
|+|+|+|.||..+|..|+++|++|+++.|++ +.+.+.+.|..+.. +..+..+.+|+||+|| |..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence 7899999999999999999999999999988 88888876644321 1223456899999999 778
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHh
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITS 110 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (291)
++++++ +.+.+.+.+++.|+.+.|+-.. .+.+.+.+..
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~~~ 116 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNGMGN-EEVLAEYFPR 116 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSSSSH-HHHHHCHSTG
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCCCCc-HHHHHHHcCC
Confidence 899999 7888998888888888887442 3555555533
No 113
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.17 E-value=1.4e-10 Score=101.06 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=84.1
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|+|||||+|.||..++..|+ ..|.+|+.||+++.... ..++....+++++++++|+|++++|.....+.++ + .+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~ 221 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-AD 221 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HH
Confidence 68999999999999999994 45789999998765421 2234555689999999999999999876665544 2 24
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
..+.++++.++|++|.+.......+.+.+....
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~ 254 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDTKALLDALDNGL 254 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence 556778999999999998888888888776543
No 114
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.15 E-value=4.5e-10 Score=95.08 Aligned_cols=109 Identities=19% Similarity=0.262 Sum_probs=82.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-C-CcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-G-ATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g-~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
|||||||+|.||..++..|.+. ++++. +|+|++++.+.+.+. | ....++.++++.++|+|++|+|...+ .++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~- 84 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV- 84 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH-
Confidence 5899999999999999999863 67766 789999888877654 5 35677899999999999999988665 4444
Q ss_pred ccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.. .+..|+.++..+.+.....+++.+...+.+..+.
T Consensus 85 --~~---aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 85 --EP---VLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred --HH---HHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence 22 3456666666666655566778777777787664
No 115
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.13 E-value=1.3e-10 Score=92.40 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=83.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|++|..+++.+..-|.+|++|||+..........+.. ..+.+++++.||+|++++|...+...++- ++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~--~~~ 113 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLIN--AEF 113 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceeee--eee
Confidence 479999999999999999999999999999988765545555663 45999999999999999997665555551 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+....-+.+.+.+.+.
T Consensus 114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred eeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 5678899999999988777777787777654
No 116
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.13 E-value=3.7e-10 Score=96.79 Aligned_cols=103 Identities=16% Similarity=0.293 Sum_probs=85.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-ccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|||||+|+||..+++.+..-|++|.+|+|+... .+.. ...++++++++||+|++++|...+.+.++- .+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~ 194 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SK 194 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HH
Confidence 37999999999999999888889999999997432 2332 246899999999999999998888887772 35
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
....++++.++|++|.+.....+.+.+.+.+.
T Consensus 195 ~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 56678899999999999988888888887765
No 117
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.13 E-value=2e-10 Score=87.31 Aligned_cols=92 Identities=26% Similarity=0.290 Sum_probs=68.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|||+|+.|.+.+.+|.++|.+|++..|... ..++..+.|..+. +..|+++.+|+|++.+|+ ....+++. ++
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy~--~~ 80 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVYE--EE 80 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHHH--HH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHHH--HH
Confidence 3799999999999999999999999999988766 6677778898775 888999999999999977 55566763 57
Q ss_pred cccccCCCcEEEEcCCCC
Q 022834 80 VLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~ 97 (291)
+.+.+++++.++. +.+.
T Consensus 81 I~p~l~~G~~L~f-ahGf 97 (165)
T PF07991_consen 81 IAPNLKPGATLVF-AHGF 97 (165)
T ss_dssp HHHHS-TT-EEEE-SSSH
T ss_pred HHhhCCCCCEEEe-CCcc
Confidence 8899989887664 4453
No 118
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.09 E-value=1.1e-09 Score=87.01 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=128.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-----------CC--------------CcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG--------------ATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g--------------~~~~~~~~~~~~~ 56 (291)
||+|+|.|.+|+.+|..|++.||+|.+||..++++....+ .| +..++++.|++++
T Consensus 5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~ 84 (313)
T KOG2305|consen 5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG 84 (313)
T ss_pred ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence 8999999999999999999999999999999887654321 22 3457789999999
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC--CHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV--DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVI 134 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 134 (291)
+=.|-.|+|..-+++.-++ +++...+.+ +.|+..|++ -|+ .+..-+..+.-.++.+|+--+ -.. +++-
T Consensus 85 Ai~iQEcvpE~L~lkk~ly--~qlD~i~d~-~tIlaSSTSt~mpS---~~s~gL~~k~q~lvaHPvNPP-yfi---PLvE 154 (313)
T KOG2305|consen 85 AIHIQECVPEDLNLKKQLY--KQLDEIADP-TTILASSTSTFMPS---KFSAGLINKEQCLVAHPVNPP-YFI---PLVE 154 (313)
T ss_pred hhhHHhhchHhhHHHHHHH--HHHHHhcCC-ceEEeccccccChH---HHhhhhhhhhheeEecCCCCC-ccc---chhe
Confidence 8889999999888877654 566666644 444544443 232 233323333233556664221 111 1222
Q ss_pred Eec---CCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 022834 135 LSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG 209 (291)
Q Consensus 135 ~~~---g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~ 209 (291)
++. .+++..++.+.+...+|.+++.....-.+..+..+ -.+.++|..++.+.-+++..++-.+++.+-
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnri-------q~Ailne~wrLvasGil~v~dvD~VmS~GL 225 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRI-------QYAILNETWRLVASGILNVNDVDAVMSAGL 225 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccc-------cHHHHHHHHHHHHccCcchhhHHHHHhcCC
Confidence 332 37888999999999999888776653334443332 247788888888887777777766666653
No 119
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.06 E-value=7.1e-10 Score=95.59 Aligned_cols=108 Identities=18% Similarity=0.353 Sum_probs=85.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|.||..+++.|...|++|.+|+++++....+.. .....++++++++||+|++++|...+.+.++. ++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~ 212 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQL 212 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHH
Confidence 47999999999999999999999999999987654321111 11234788999999999999998888888873 356
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|+++-+....-+.+.+.+.+..
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~ 244 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGK 244 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhcCC
Confidence 67788999999999987777777877776653
No 120
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.03 E-value=2.5e-09 Score=90.34 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=80.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCc-EEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..++..|.+. +++ +.++|+++++.+.+.+. +...+.+.++++.++|+|++|+|. ....+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH--
Confidence 7999999999999999999875 355 55789999888877654 667778899988899999999965 4455555
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcEE
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+ +..|+.++..|.+ .+...+++.+...+.+..+.
T Consensus 79 -~~a---l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 79 -PKS---LENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred -HHH---HHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 333 3345555555553 45566777777777776543
No 121
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.00 E-value=2.4e-09 Score=98.94 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=89.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|+||..+|+.|..-|.+|.+||+... .+...+.|....+++++++++||+|++++|...+.+.++- ++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 215 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEE 215 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHH
Confidence 3799999999999999999999999999998532 2333445766667899999999999999998877777762 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++.+.......+.+.+....+
T Consensus 216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 248 (525)
T TIGR01327 216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHV 248 (525)
T ss_pred HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCe
Confidence 567889999999999988888888887776543
No 122
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.98 E-value=1.9e-09 Score=99.63 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=88.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++|||||+|+||..+++.|...|++|.+||++.. .+...+.|.... +.++++++||+|++++|...+.+.++- .+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~ 216 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYIS-PERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEE 216 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHH
Confidence 4799999999999999999999999999998643 233344566665 899999999999999999888887772 256
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++.+.....+.+.+.+.+.
T Consensus 217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 217 LAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred HhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 6778899999999999888888888877664
No 123
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.92 E-value=6.7e-09 Score=88.58 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=79.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++|+|+|.||..++..|...|.+|++++|++++.+.+.+.|.... .+..+.++++|+||.++|.....++
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~------- 225 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTAD------- 225 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHH-------
Confidence 7999999999999999999999999999999888777766665433 2456778899999999976422122
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+.++++.+++|+++....+- + +...+.|.+.+-+|
T Consensus 226 ~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 226 VLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred HHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 2344567899999988643321 1 34456677666544
No 124
>PLN02928 oxidoreductase family protein
Probab=98.91 E-value=5.5e-09 Score=91.52 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=83.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH------------HHCCCcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL------------VAHGATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
++|||||+|.||..+++.|..-|.+|++|+|+....... ..... ...+.++++++||+|++++|...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence 479999999999999999999999999999974321111 01112 34588999999999999999877
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
....++- ++....++++.++|+++-+....-+.+.+.+...
T Consensus 239 ~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 239 ETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred HhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 7777662 3556678899999999988777777777777654
No 125
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.91 E-value=2.4e-08 Score=74.02 Aligned_cols=108 Identities=20% Similarity=0.282 Sum_probs=81.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHH-CCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVA-HGATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|||+|.+|......+.+. ++++. ++|+++++.+.+.+ .|...++|.+++++ +.|+|++|+|...+.+-+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 6999999999999999998876 45554 78999999888754 48889999999987 6899999999987766555
Q ss_pred hccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
. .+..|. ++++- -.......+++.+...+.+..+
T Consensus 81 ---~----~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 ---K----ALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp ---H----HHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred ---H----HHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 2 223444 44441 1336777888888777776654
No 126
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.90 E-value=5.7e-09 Score=90.12 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=86.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|+.++..+..-|.+|.+||+...+. .....+.....++++++++||+|.+.+|.....+.++- .+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~ 219 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEE 219 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHH
Confidence 479999999999999999999999999999943322 22233566678999999999999999998887777772 244
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 220 LAKMKPGAILINAARGGVVDEDALLAALDSG 250 (324)
T ss_pred HhhCCCCeEEEECCCcceecHHHHHHHHHcC
Confidence 5567799999999999877777787777654
No 127
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.89 E-value=3e-09 Score=92.19 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred eEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+|+|||+|.||..++..+.. ...+|++|+|++++.+.+.+. | +....+.+++++++|+|+.|+|.+ +.+
T Consensus 127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pv 203 (314)
T PRK06141 127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPL 203 (314)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCE
Confidence 79999999999999986654 347899999999999887764 4 455678888999999999888654 344
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+ . ...+++++ +|++....+...+++...+.+++..|+|.
T Consensus 204 l---~--~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 204 V---R--GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred e---c--HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 4 1 13566777 45555555555566665555555556653
No 128
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.88 E-value=6.7e-09 Score=91.51 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=80.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHH----HHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA----AALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~----~~~~v~~~ 76 (291)
++|||||+|+||..+++.+..-|.+|.+||+..... .+.....++++++++||+|++++|... ....++ +
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li-~ 190 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL-D 190 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC-C
Confidence 479999999999999999999999999999854321 122234589999999999999998643 233333 2
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
++....++++.++|+++.+.....+.+.+.+...
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 191 -EAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred -HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 2455668899999999999888888888777654
No 129
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.87 E-value=1.3e-08 Score=82.37 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
|+|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. +....++ +++. .+||+++-|.....-.++.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~---- 103 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI---- 103 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH----
Confidence 589999999999999999999999999999999888887765 6655544 4444 47999997753322222222
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+.+ +.++|+.-.++.... .+..+.+.++|+.|++
T Consensus 104 ---~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 104 ---PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred ---HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 233 356888777763322 4566678888988873
No 130
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=87.37 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=86.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|.++|+.+..-|.+|..|+|++. -+.-.+.+.+..+ .+++++++|+|.+.+|-..+...++- .+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~ 222 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEE 222 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHH
Confidence 4899999999999999999966778999999865 3333333456555 99999999999999998888777773 255
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
...++++.++|+++-+.....+.+.+.+.+.
T Consensus 223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 223 LAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 6678899999999999887878888777665
No 131
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.86 E-value=1e-08 Score=86.76 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=62.7
Q ss_pred CeEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|||.| .||..|+..|.++|++|++|++.. .++.+.+++||+||+|++++..++..+
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~~~v~~~~----- 220 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRPRLIDADW----- 220 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCChhcccHhh-----
Confidence 379999996 999999999999999999998753 278888999999999999987665544
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+++|++|||++..
T Consensus 221 ----ik~GaiVIDvgin 233 (301)
T PRK14194 221 ----LKPGAVVIDVGIN 233 (301)
T ss_pred ----ccCCcEEEEeccc
Confidence 6789999999865
No 132
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.84 E-value=5.7e-08 Score=84.26 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=83.8
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++||||+|++|..+++.+. .-|.+|..|++.... +.....+... .+.++++++||+|++++|...+.+.++- .+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~ 221 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AE 221 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HH
Confidence 47999999999999999997 667789999986422 2222335544 4899999999999999998887777762 24
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
....++++.++|+++-+....-+.+.+.+.+.
T Consensus 222 ~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 222 QFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 56678899999999998877778888777654
No 133
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.81 E-value=1.9e-08 Score=90.00 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=86.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|..+|+.+..-|.+|..||+++... ..+.....++++++++||+|.+++|...+...++- ++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~ 225 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEE 225 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHH
Confidence 379999999999999999999999999999864321 12344456899999999999999998777777662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+.+..+
T Consensus 226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 226 LALMKPGAILINASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc
Confidence 667889999999999988888888887766533
No 134
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.79 E-value=1.2e-07 Score=66.76 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCcccccccccccccCCCCCCcccccHHHHHHHH
Q 022834 164 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 243 (291)
Q Consensus 164 ~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 243 (291)
..|+..|++.|.+.++.+++++|...+|++.|+|..++.+.+......++ ... .+.+|+...+..||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~-------~~~--~pg~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP-------HYL--RPGPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS-------SS---S-SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc-------ccC--CCCCCCCCcchhhhHHHH
Confidence 46899999999999999999999999999999999999999987643321 111 123456778899999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHH
Q 022834 244 LALGDENAVSMPIAAAANEAFK 265 (291)
Q Consensus 244 ~~~a~~~g~~~p~~~~~~~~~~ 265 (291)
...+++.|.+.++++++.+...
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999999988877654
No 135
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.79 E-value=9.6e-08 Score=76.10 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=74.7
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCc-EEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|+|+|||||.+|..+...+... .++ +.+|||+.+++..+.+. +.+..++++|.+.+.|+++.|- .++++++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 7999999999999999988753 354 77899999999877654 5555688999989999999999 667787776
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHh
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITS 110 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~ 110 (291)
.++ |+.|.-++.+|.+ .+...+++.+....
T Consensus 78 -~~~---L~~g~d~iV~SVGALad~~l~erl~~lak~ 110 (255)
T COG1712 78 -PKI---LKAGIDVIVMSVGALADEGLRERLRELAKC 110 (255)
T ss_pred -HHH---HhcCCCEEEEechhccChHHHHHHHHHHhc
Confidence 333 3444434444544 35555555544433
No 136
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.77 E-value=2.7e-08 Score=87.46 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=78.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHH----HHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~----~~~v~~~ 76 (291)
++|||||+|+||+.+++.|..-|.+|.+||+..... ... ....++++++++||+|++++|-... ...++ +
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li-~ 190 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA-D 190 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc-C
Confidence 479999999999999999999999999999743211 111 1245899999999999999985332 33333 1
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
++....+++++++|+++-+....-+.+.+.+.+.
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 191 -EKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred -HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 2445667899999999999877777787777654
No 137
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.74 E-value=4.4e-08 Score=84.65 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=83.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|++|..+|+.+..-|.+|..|||..... ..+.. ..+.++++++||+|++++|...+...++- ++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~ 218 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKE 218 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHH
Confidence 479999999999999999988888999999864321 12333 34899999999999999998777766662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
...++++.++|+++-+.....+.+.+.+.+..+
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i 251 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDI 251 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 567889999999999887777888887765433
No 138
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.73 E-value=8.8e-08 Score=83.94 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=87.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCC---Cc-------ccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG---AT-------VGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g---~~-------~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||.|||+|.+|+..+..|+++| ++|++.||+.+++.++.+.. ++ -.+...+++++.|+||.|.|....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999998 89999999999999887652 21 123455778889999999977554
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
. .++ + ..++.+..++|+|...+.. .++.+.+.+.|+..+ ++.+.-+
T Consensus 82 ~-~i~---k---a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPG 128 (389)
T COG1748 82 L-TIL---K---ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPG 128 (389)
T ss_pred H-HHH---H---HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcc
Confidence 3 444 2 2345778899998887765 777777777777665 5544333
No 139
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.72 E-value=8.6e-08 Score=82.29 Aligned_cols=107 Identities=22% Similarity=0.220 Sum_probs=77.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
.|++|||+|.+|..++..|...|.+|++++|++++.+.....|.... .+..+.++++|+||.|+|...-.++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~------ 226 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE------ 226 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH------
Confidence 47999999999999999999999999999999888777766676543 2556777899999999976432222
Q ss_pred ccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
....++++.+|+|++.....+- + +...+.|+..+.
T Consensus 227 -~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~ 261 (296)
T PRK08306 227 -VLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALL 261 (296)
T ss_pred -HHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEE
Confidence 3344668899999887643321 1 233445655553
No 140
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.70 E-value=1.9e-07 Score=80.88 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=81.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+|||||+|++|..+++.+..-|.+|..|++.... .... ..+.++++++||+|++++|-..+.+.++- ++..
T Consensus 150 tvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~~ 220 (317)
T PRK06487 150 TLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--AREL 220 (317)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHHH
Confidence 7999999999999999999889999999986321 1112 24789999999999999998777777662 2556
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
..++++.++|+++-+.....+.+.+.+.+.
T Consensus 221 ~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 221 ALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 678899999999988777777787777654
No 141
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.69 E-value=1e-07 Score=81.56 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=87.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+|+|+|+|++|..++++|..-|..+..+.|++...+...+.+.. ..+.++.+.++|+|++|.|...++..++. +++.
T Consensus 164 ~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~~ 240 (336)
T KOG0069|consen 164 TVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKFI 240 (336)
T ss_pred EEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHHH
Confidence 79999999999999999999884455667877766666665655 45888999999999999999888888874 3677
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
..++++.++|+++-+....-+.+.+.+.+.
T Consensus 241 ~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 241 EKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 788899999999988877777777766553
No 142
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.69 E-value=8.5e-08 Score=81.43 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=61.1
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEc-CCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
.+|+||| .|.||..|+..|.++|++|++|+ |++ +++++++++|+||+|++++..++..+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~---- 219 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW---- 219 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe----
Confidence 3799999 99999999999999999999995 653 46788899999999999977555443
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
+++|++|||++..
T Consensus 220 -----lk~GavVIDvGin 232 (296)
T PRK14188 220 -----IKPGATVIDVGIN 232 (296)
T ss_pred -----ecCCCEEEEcCCc
Confidence 6789999998765
No 143
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.69 E-value=1.1e-07 Score=82.25 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=81.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++||||+|.+|..+++.+..-|.+|..|++.... .. .. ...+.++++++||+|++++|-......++- ++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~ 219 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AET 219 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHH
Confidence 47999999999999999998888999999986421 11 11 135899999999999999997777766662 245
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...++++.++|+++-+.....+.+.+.+.+..
T Consensus 220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~ 251 (314)
T PRK06932 220 LALMKPTAFLINTGRGPLVDEQALLDALENGK 251 (314)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 56788999999999987777777877776543
No 144
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.66 E-value=1.1e-07 Score=79.13 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=113.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
||+|||+|+-|.+-+.+|..+|.+|++--|.... .+...++|..+. +.+|+++.+|+|++-+|+ ..-.+++. +.+
T Consensus 20 ~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy~--~~I 95 (338)
T COG0059 20 KVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVYE--KEI 95 (338)
T ss_pred eEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHHH--HHh
Confidence 7999999999999999999999999987765444 566777787764 899999999999999987 55677773 388
Q ss_pred ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Ecc-cCCChHhh----cccceEEEe-cC--CHHHHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP-VSGSKQPA----ETGQLVILS-AG--EKALYDEAISALN 151 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~----~~g~~~~~~-~g--~~~~~~~~~~ll~ 151 (291)
.|.+++|+.+ ..+.+.......+ .+..++..+ -+| -.|..... ..|-..++. -. +....+.......
T Consensus 96 ~p~Lk~G~aL-~FaHGfNihf~~i---~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~Ak 171 (338)
T COG0059 96 APNLKEGAAL-GFAHGFNIHFGLI---VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAK 171 (338)
T ss_pred hhhhcCCceE-Eeccccceeccee---cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHH
Confidence 9999888854 4455543333222 122344433 455 23332221 112222221 11 3456667777777
Q ss_pred Hhccce--EeeCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 022834 152 VIGKKA--FFLGEVGNGAKMKLVV--NMIMGCMMNTFSEGLVLAEKSGLDPRT 200 (291)
Q Consensus 152 ~~g~~~--~~~~~~~~a~~~k~~~--n~~~~~~~~~~~E~~~~~~~~g~~~~~ 200 (291)
.+|..- ++-.......-.-++. -.+-.+...++.-+...+.+.|.+|+.
T Consensus 172 giGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~ 224 (338)
T COG0059 172 GIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL 224 (338)
T ss_pred hcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 777331 1111111111111110 011112345555556667788888873
No 145
>PLN02306 hydroxypyruvate reductase
Probab=98.65 E-value=1.6e-07 Score=83.22 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=82.0
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEEEEcCCcchh-HHH-HHCC------------CcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKC-DEL-VAHG------------ATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~-~~l-~~~g------------~~~~~~~~~~~~~~dvvii~vp 65 (291)
.+|||||+|++|..+|+.+. .-|.+|..||++.... ... ...+ .....+.++++++||+|++++|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P 245 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV 245 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence 37999999999999999986 5688999999876421 111 1111 1223589999999999999999
Q ss_pred CHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhc
Q 022834 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (291)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (291)
-..+...++- .+....++++.++|+++-+.......+.+.+...
T Consensus 246 lt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg 289 (386)
T PLN02306 246 LDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKAN 289 (386)
T ss_pred CChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 8777777762 2556678899999999988777777777777554
No 146
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.65 E-value=3.6e-07 Score=75.70 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=80.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC---Cc-EEEEcCCcchhHHHHHCCCcccCCHHHH-HhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g---~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+||+|||+|.||..++..|.+.+ ++ +.+++|++++.+.+.+. ..+..+++++ ...+|+|+.|- .+..+++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A-~~~av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAA-GQQAIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECC-CHHHHHHHH-
Confidence 58999999999999999987642 45 44678888888777664 7788899996 57899999999 667777766
Q ss_pred ccCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCc-EEEcccCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGH-FLEAPVSGS 123 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 123 (291)
+. .|..+.-++.+|.+ .+...+++.+...+.+.+ |+...-.++
T Consensus 80 --~~---iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 80 --EG---CLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAG 126 (267)
T ss_pred --HH---HHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHh
Confidence 33 34556655656655 445566666665555543 444443443
No 147
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.64 E-value=5.8e-08 Score=84.11 Aligned_cols=91 Identities=21% Similarity=0.350 Sum_probs=66.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCccc--CCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++|+|||+|.||..++..|...| ++|++++|++++.+.+.+. |.... ++..+.+.++|+||.|+|.+.. ..++
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~-- 255 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV-- 255 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH--
Confidence 58999999999999999999865 6899999999988777654 54332 2345667789999999977554 3333
Q ss_pred cCccccc-cCCCcEEEEcCC
Q 022834 77 KGGVLEQ-ICPGKGYIDMST 95 (291)
Q Consensus 77 ~~~l~~~-l~~~~~vv~~s~ 95 (291)
+..... ..++.+++|++.
T Consensus 256 -~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 256 -ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred -HHHHhhCCCCCeEEEEeCC
Confidence 222211 225679999885
No 148
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.63 E-value=1.9e-07 Score=69.50 Aligned_cols=99 Identities=27% Similarity=0.384 Sum_probs=66.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCcEE-EEcCCcc-hh----HHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLS-KC----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~V~-~~~r~~~-~~----~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+|+ |+||..++..+.+ .++++. +++++++ .. ..+. ..++.+.++.+++.+.+|++|-++ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 89999999 9999999999998 678855 5677762 11 1111 236778899999999999999998 7777
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHHH
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISR 106 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~ 106 (291)
+.+.+ +.+. +.+..+|..+|+.. ...+.+.+
T Consensus 80 ~~~~~---~~~~---~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 80 VYDNL---EYAL---KHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp HHHHH---HHHH---HHT-EEEEE-SSSHHHHHHHHHH
T ss_pred hHHHH---HHHH---hCCCCEEEECCCCCHHHHHHHHH
Confidence 77766 3333 34667777777764 44444444
No 149
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.62 E-value=2.2e-08 Score=75.82 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=55.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCC----C--cccCCHHHHHhhCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHG----A--TVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g----~--~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
++.|||+|.+|.+++..|.+.|.+ |++++|+.++++.+.+.. + ...++..+.+.++|+||.|+|.+..
T Consensus 14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 14 RVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 789999999999999999999976 999999999999887642 1 2234555677899999999977543
No 150
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.61 E-value=1.1e-07 Score=80.73 Aligned_cols=112 Identities=23% Similarity=0.252 Sum_probs=78.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC----CCcccCCHHHH-HhhCCEEEEecCCHH--HHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEV-IKKCTITIGMLADPA--AALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~-~~~~dvvii~vp~~~--~~~~v~ 74 (291)
++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. +.....+..+. ..++|+||.|+|... ..+++.
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~ 198 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPP 198 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCC
Confidence 68999999999999999999999999999999888777653 22122233332 357999999998642 111111
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+ -...++++.+++|++...+.+ .+.+...++|+.+++.-
T Consensus 199 ~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG~ 237 (270)
T TIGR00507 199 V----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDGL 237 (270)
T ss_pred C----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCCH
Confidence 0 123466888999998876655 46666777788776544
No 151
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.58 E-value=3.6e-07 Score=78.80 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=64.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHH----HC--------CCcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH--------GATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~~--------g~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..+|..++..|+ +|+++|++++..+... +. .++...+.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 799999999999999999999887 8999999766544111 11 1233456665 68999999999732
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
. .++++. +++.+.. ++.+++..||-..
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~---~~I~~~~-p~~~iIv~tNP~d 122 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVT---GRIMEHS-PNPIIVVVSNPLD 122 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCcHH
Confidence 2 234444 4555554 5667777776543
No 152
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.57 E-value=1.2e-07 Score=83.77 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=94.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCC------cchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT------LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
++|+|||+|++|.+.|.+|...|++|++--|. .+..+.+.+.|..+ .+.+|+++.||+|++.+|+. .-..+.
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~ 114 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVV 114 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHH
Confidence 48999999999999999999999999955443 34555566678766 67999999999999999886 455566
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Ecc-cCCChHhhc----ccceEEE-ec--C--CHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP-VSGSKQPAE----TGQLVIL-SA--G--EKALY 143 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~----~g~~~~~-~~--g--~~~~~ 143 (291)
+++.+.++++..+. .|-+...... ...+..++.++ -+| -.|+..... .|-...+ +- . +....
T Consensus 115 ---~~i~p~LK~Ga~L~-fsHGFni~~~---~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~ 187 (487)
T PRK05225 115 ---RAVQPLMKQGAALG-YSHGFNIVEV---GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGM 187 (487)
T ss_pred ---HHHHhhCCCCCEEE-ecCCceeeeC---ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHH
Confidence 78889998887654 4555332111 11222345444 555 333322211 1222222 22 1 33456
Q ss_pred HHHHHHHHHhccc
Q 022834 144 DEAISALNVIGKK 156 (291)
Q Consensus 144 ~~~~~ll~~~g~~ 156 (291)
+.......++|..
T Consensus 188 ~~ala~a~~iG~~ 200 (487)
T PRK05225 188 AIAKAWAAATGGH 200 (487)
T ss_pred HHHHHHHHHhCCC
Confidence 6677777777755
No 153
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.56 E-value=9.8e-07 Score=78.67 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=63.5
Q ss_pred CeEEEEecChhhH-HHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc---c---------------c--CCHHHH---Hhh
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLSKCDELVAHGAT---V---------------G--GSPAEV---IKK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~---~---------------~--~~~~~~---~~~ 56 (291)
|||.++|+|+||+ .++..|.+.|++|+++|+++++.+.++++|.. . . .+.+++ +.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 9999999999998 45888888999999999999999999887631 0 1 122222 337
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCC--------cEEEEcCCC
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPG--------KGYIDMSTV 96 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~--------~~vv~~s~~ 96 (291)
+|+|.+++ ++.+.+.+. ..+.+.+.+. -.|+.|-|+
T Consensus 81 ~dlvt~~v-~~~~~~s~~---~~l~~~L~~R~~~~~~~~~~VlsceN~ 124 (381)
T PRK02318 81 ADLVTTAV-GPNILPFIA---PLIAKGLKKRKAQGNTKPLNIIACENM 124 (381)
T ss_pred CCEEEeCC-CcccchhHH---HHHHHHHHHHHHcCCCCCCEEEecCCh
Confidence 89999998 555555555 4444443222 256666555
No 154
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=4.4e-06 Score=66.87 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=122.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
|.++|||.|..|.+......+.++.+. +..|++++++.+.+.-.....+.+...+-.+++|+-+|+. .+..+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va---a- 85 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA---A- 85 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH---H-
Confidence 579999999999996655555556655 3478888888876642222223333334458888888775 344443 1
Q ss_pred cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-Ecc---cCCChHhhc--ccceEEEecCCHHHHHHHHHHHHHh
Q 022834 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAP---VSGSKQPAE--TGQLVILSAGEKALYDEAISALNVI 153 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~--~g~~~~~~~g~~~~~~~~~~ll~~~ 153 (291)
.....++++++++|...... +...+...|+.-. -+| ..|-+.... .++...+..+|+--...++.+...+
T Consensus 86 -~~~~rpg~iv~HcSga~~~~---il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~em 161 (289)
T COG5495 86 -TSLNRPGTIVAHCSGANGSG---ILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEM 161 (289)
T ss_pred -hcccCCCeEEEEccCCCchh---hhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHh
Confidence 12345889999998765432 3334445554332 233 223333333 2333334456777778899999999
Q ss_pred ccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 022834 154 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR 199 (291)
Q Consensus 154 g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~ 199 (291)
|.+++.+-+ +.-.......|...+.....+.++.++....|.|.-
T Consensus 162 gg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 162 GGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred CCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 998877654 566667777788888889999999999999998753
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.52 E-value=2.1e-07 Score=81.00 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=69.8
Q ss_pred eEEEEecChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|.+|...+..+.. ...+|.+|+|++++++.+.+. | +..+.+++++++++|+|++|+|..+ .+
T Consensus 130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~ 206 (325)
T TIGR02371 130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PV 206 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cE
Confidence 68999999999998877765 345799999999998877652 5 4557899999999999999997632 33
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
+ . ..++++|..|..+++..|..
T Consensus 207 ~---~--~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 207 V---K--ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred e---c--HHHcCCCCEEEecCCCCccc
Confidence 3 1 23467899988777766643
No 156
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.52 E-value=1e-06 Score=74.51 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCc--chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
|||+|||+|.||..+++.+.+. +.++. ++++.. ++.......+...+++.+++..+.|+|+.|+|...+ .+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH--
Confidence 7999999999999999999875 45654 334322 222222223567778888874568999999977544 4444
Q ss_pred cCccccccCCCcEEEEcCCC---CHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
...+..|+.++..+.+ .+...+.+.+...+.|..+. .....++
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg 125 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGG 125 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhC
Confidence 2334566666655554 34455667777767676544 4443344
No 157
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.48 E-value=1.3e-06 Score=73.61 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=72.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|||+|+|+ |.||..++..+.+ .++++. ++|+++++.......++..+++.+++++++|+|+.++|.. ...+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE-ATLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH-HHHHHH---
Confidence 79999998 9999999999886 467755 5788876654442235666788888888899999888554 445554
Q ss_pred CccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEEEcc
Q 022834 78 GGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
. ..+..+..++..+++ .+...+++.+ .. ++...+-+|
T Consensus 78 ~---~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 78 E---FALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred H---HHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 2 223455544444444 5666666665 32 344444444
No 158
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.48 E-value=4.9e-07 Score=76.15 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=61.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+|+|||. |.||..|+..|.++|++|++|... +.++.+.+++||+||.|++++..++..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~----- 219 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF----- 219 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----
Confidence 37999999 999999999999999999999421 1367888999999999999877655444
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+++|+++||++..
T Consensus 220 ----ik~GavVIDvgin 232 (284)
T PRK14179 220 ----VKEGAVVIDVGMN 232 (284)
T ss_pred ----ccCCcEEEEecce
Confidence 6789999998865
No 159
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.45 E-value=1.9e-06 Score=73.98 Aligned_cols=100 Identities=9% Similarity=0.125 Sum_probs=67.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEE-EEcCCc-chhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
+||+|||+|+||..++..+.+. ++++. ++++++ ++.. ...+.....+..++..++|+|++|+|+..+.+.+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~--- 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA--- 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH---
Confidence 4899999999999999999765 67866 578885 3322 12244444566677778999999999877766555
Q ss_pred CccccccCCCcEEEEcCCC---CHHHHHHHHHHHH
Q 022834 78 GGVLEQICPGKGYIDMSTV---DHETSIKISRAIT 109 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~---~~~~~~~~~~~~~ 109 (291)
+.+..+.-+|+.... .|...+.+.+...
T Consensus 79 ----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk 109 (324)
T TIGR01921 79 ----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAK 109 (324)
T ss_pred ----HHHHcCCCEEECCCcccCCHHHHHHHHHHHH
Confidence 335566677765432 3445555555444
No 160
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.45 E-value=9.3e-07 Score=76.61 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=62.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH----C----C--Ccc--cCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA----H----G--ATV--GGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~----~----g--~~~--~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.||..++..++..|+ +|.++|+++++++.... . + .++ ..+. +.+++||+||+++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 699999999999999999998876 99999998876643221 1 1 122 2344 4578999999996321
Q ss_pred ---------------HHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 ---------------AAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+.++. +++.+.. ++.+++..||.
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~---~~i~~~~-~~~~viv~tNP 121 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVA---EGIKKYA-PDAIVIVVTNP 121 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCc
Confidence 1244454 4555554 55666666654
No 161
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.45 E-value=8.4e-07 Score=76.51 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=71.1
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC----CCcc-cCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----GATV-GGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~----g~~~-~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
+++|||+|.+|...+..+.. .+ .+|.+|+|++++++.+.++ +..+ ..+.++++.++|+|+.|+|... .++
T Consensus 127 ~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~ 203 (304)
T PRK07340 127 DLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVY 203 (304)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---cee
Confidence 79999999999999999975 45 4699999999998887653 3333 4678888999999999997653 344
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHH
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSI 102 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~ 102 (291)
.. .+++|+.|..+++..|...|
T Consensus 204 ---~~---~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 204 ---PE---AARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred ---Cc---cCCCCCEEEecCCCCCCccc
Confidence 22 35799999888877775433
No 162
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.43 E-value=8.5e-07 Score=68.11 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=61.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++.|+|+|.+|..+|+.|...|.+|++++++|-++-+..-+|.++. +.+++++.+|++|.++.....+.. +..
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~------e~~ 97 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG------EHF 97 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H------HHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH------HHH
Confidence 6889999999999999999999999999999988777777888875 688999999999998855322111 122
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
..++++.++.+.+..
T Consensus 98 ~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 98 RQMKDGAILANAGHF 112 (162)
T ss_dssp HHS-TTEEEEESSSS
T ss_pred HHhcCCeEEeccCcC
Confidence 446688888877655
No 163
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.41 E-value=1.4e-06 Score=78.29 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
.+++|||+|.+|..++..+...|.+|+++++++.+.......|... .+.+++++.+|+|++|+.+..-+. .+.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~------~e~ 327 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIIT------LEH 327 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccC------HHH
Confidence 3799999999999999999999999999999887765444557654 367888999999999985422221 133
Q ss_pred ccccCCCcEEEEcCCCC
Q 022834 81 LEQICPGKGYIDMSTVD 97 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~ 97 (291)
...++++.++++++-..
T Consensus 328 ~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 328 MRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HhccCCCcEEEEcCCCc
Confidence 45567899999988774
No 164
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.40 E-value=3.2e-06 Score=75.11 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=73.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+|+|+|+|.+|..++..+...|.+|+++++++.+.......|..+. +.+++++.+|++|.+++....+..- ..
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~~ 269 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------HF 269 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------HH
Confidence 7999999999999999999999999999999887666666676554 5677888999999998664444321 23
Q ss_pred cccCCCcEEEEcCCCCH-HHHHHHHH
Q 022834 82 EQICPGKGYIDMSTVDH-ETSIKISR 106 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~-~~~~~~~~ 106 (291)
..++++.++++.+-... .....+.+
T Consensus 270 ~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 270 ENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred hcCCCCcEEEEECCCCceeCHHHHHH
Confidence 45678889998776543 33444444
No 165
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.38 E-value=2.8e-06 Score=75.94 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=70.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|+|+|.+|..++..+...|.+|+++++++.+.......|..+ .+.+++++.+|++|.|+.....+.. ...
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------~~~ 286 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITA------EHM 286 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------HHH
Confidence 699999999999999999999999999999988876665667664 3678888899999999865443332 233
Q ss_pred cccCCCcEEEEcCCCC
Q 022834 82 EQICPGKGYIDMSTVD 97 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~ 97 (291)
..++++.++++.+...
T Consensus 287 ~~mK~GailiNvG~~d 302 (425)
T PRK05476 287 EAMKDGAILANIGHFD 302 (425)
T ss_pred hcCCCCCEEEEcCCCC
Confidence 4567888998877654
No 166
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.38 E-value=2e-06 Score=74.39 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC--------C--CcccCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~~dvvii~vp~~~ 68 (291)
+||+|||+|.+|..++..|+..| +++.++|+++++++.+..+ + ..+.....+.+.+||+||++++.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 58999999999999999999998 6899999999887765432 1 1222233345789999999986431
Q ss_pred ---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 ---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+.- ++.+++..||-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~---~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIV---PKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEecCh
Confidence 134444 4444443 56666766643
No 167
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.37 E-value=6.2e-07 Score=68.32 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=50.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+ |.+|..++..|...+. ++.++|+++++++...-+ ...+.....+.+++||+|+++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 89999999 9999999999998874 799999997766543321 12333355667789999999873
No 168
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.37 E-value=1.3e-06 Score=64.86 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhC-CCcEEEE-cCCcchhHHHHHCCCcc----cC--CHHHH-HhhCCEEEEecCCHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHGATV----GG--SPAEV-IKKCTITIGMLADPAAAL 71 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~-g~~V~~~-~r~~~~~~~l~~~g~~~----~~--~~~~~-~~~~dvvii~vp~~~~~~ 71 (291)
||+|+|+ |.+|..++..|.+. ++++..+ +++.++.+.+...+... .. +..+. ..++|+||+|+|...+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 6999995 99999999999884 7787655 65543333333322111 11 11122 247999999998865444
Q ss_pred HHHhccCccccccCCCcEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
++ ..+.+.+.+|++++|+|+.
T Consensus 81 -~~---~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 81 -IA---PLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred -HH---HHHHhhhcCCCEEEECCcc
Confidence 43 2334455789999999987
No 169
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.37 E-value=1.5e-06 Score=78.35 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=51.9
Q ss_pred CeEEEEecChhhHHHHH--HH----HhCCCcEEEEcCCcchhHHHHHC------------CCcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISM--NL----LRNGFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~--~l----~~~g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|.||.+++. .+ ..+|++|.+||+++++++..... .+..+++..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 79999999999998665 34 44678999999999887764331 13346677889999999999
Q ss_pred ecCC
Q 022834 63 MLAD 66 (291)
Q Consensus 63 ~vp~ 66 (291)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9974
No 170
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.36 E-value=1.4e-06 Score=75.24 Aligned_cols=110 Identities=13% Similarity=0.185 Sum_probs=82.1
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHH----CC---CcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVA----HG---ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~----~g---~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
.++|||+|.++......+..- + -+|.+|+|++++.+.+.. .+ +..++|.++++++||+|+.|+|... .
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---P 208 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---P 208 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---C
Confidence 479999999999999999863 3 479999999999988764 23 4677899999999999999997743 4
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
++ ...++++|+.|...++..|...+--.+.+...+..++|.+
T Consensus 209 il-----~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 209 VL-----KAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred ee-----cHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 44 2346779999888877766554444444444445566665
No 171
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.35 E-value=5e-06 Score=70.32 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=71.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHh-CCCcEE-EEcCC-cchh----HHHHH---CCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLR-NGFKVT-VWNRT-LSKC----DELVA---HGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~-~g~~V~-~~~r~-~~~~----~~l~~---~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+| +|.||..+++.+.+ .++++. ++||. ++.. ..+.. .++.++++.+++...+|+||.|+|+ ..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p-~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP-EG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh-HH
Confidence 6999999 69999999999986 567755 56753 2221 11111 3566778888875568999999955 44
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEEEcc
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+.+ . ..+..+..+|..+++ .+...+++.+...+.++.++-+|
T Consensus 81 ~~~~~---~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 81 VLNHL---K---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred HHHHH---H---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 44444 2 234455555543444 55666677666555556565554
No 172
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.35 E-value=2.6e-06 Score=73.74 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=50.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHH----HHHCC-----CcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAHG-----ATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~g-----~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|||+|||+|.+|..++..|+.+| ++|.++|+++++++. +.... ..+..+..+.+++||++|+|++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 89999999999999999999999 589999999877653 22111 111122335678999999999753
No 173
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.35 E-value=1.7e-06 Score=75.49 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=70.4
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CC--cccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. ++ ....+.+++++++|+|+.|+|.. ..
T Consensus 129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~---~p 205 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK---TP 205 (325)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC---Cc
Confidence 69999999999999888754 44 4699999999998877652 33 34677888999999999999764 23
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSI 102 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~ 102 (291)
++ . ..+++|+.|+.+.+..|...+
T Consensus 206 ~i----~--~~l~~G~hV~~iGs~~p~~~E 229 (325)
T PRK08618 206 VF----S--EKLKKGVHINAVGSFMPDMQE 229 (325)
T ss_pred ch----H--HhcCCCcEEEecCCCCccccc
Confidence 44 2 456789999888777665443
No 174
>PLN00203 glutamyl-tRNA reductase
Probab=98.35 E-value=1e-06 Score=80.95 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=65.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--CCc----ccCCHHHHHhhCCEEEEecCCHHH--HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--GAT----VGGSPAEVIKKCTITIGMLADPAA--AL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--g~~----~~~~~~~~~~~~dvvii~vp~~~~--~~ 71 (291)
.+|+|||+|.||..++..|...|. +|++++|+.++++.+.+. +.. ..++..+.+.++|+||.|+|.+.. .+
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~~ 346 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFLK 346 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeCH
Confidence 379999999999999999999996 699999999999888764 322 234566778899999999854332 23
Q ss_pred HHHhccCcccccc---CCCcEEEEcCCC
Q 022834 72 SVVFDKGGVLEQI---CPGKGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l---~~~~~vv~~s~~ 96 (291)
+.+ +.+.+.- .+..++||++..
T Consensus 347 e~l---~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 347 EHV---EALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred HHH---HHhhhcccccCCCeEEEEeCCC
Confidence 333 2222110 123578887654
No 175
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.33 E-value=9.2e-07 Score=80.91 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=72.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcccCCHHH--HHhhCCEEEEecCCHHHHHHHHhcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAE--VIKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~--~~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
++++|+|+|.+|.+++..|.+.|++|++++|++++++.+.+. +.... +..+ .+.++|+||.|+|....+...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~~~~---- 407 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTIPKA---- 407 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcchhH----
Confidence 478999999999999999999999999999999888877653 22211 1222 146799999999876533221
Q ss_pred CccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+. .+++|++...+.+. +.+...+.|+..++.
T Consensus 408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G 438 (477)
T PRK09310 408 ------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIYG 438 (477)
T ss_pred ------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEECc
Confidence 11 38899887765443 445566667766543
No 176
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.33 E-value=1.2e-06 Score=75.26 Aligned_cols=91 Identities=5% Similarity=0.099 Sum_probs=69.8
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHC-----C--CcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|..|...+..+..- . .+|.+|+|++++++.+.+. | +.+++++++++.+||+|+.|+|..+ .
T Consensus 119 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P 195 (301)
T PRK06407 119 NFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---P 195 (301)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---c
Confidence 689999999999999998863 3 3699999999998877543 4 4456899999999999999996532 3
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
++ + ..++++|..|....+..|..
T Consensus 196 ~~---~--~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 196 IF---N--RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred Ee---c--HHHcCCCceEEecCCCCCCc
Confidence 33 1 23567888888777766644
No 177
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.33 E-value=6.7e-06 Score=72.28 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=77.0
Q ss_pred CeEEEEecChhh-HHHHHHHHhCCC--c-EEEEcCCcchhHHHHHC-CC-cccCCHHHHHhh--CCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMG-KAISMNLLRNGF--K-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG-~~la~~l~~~g~--~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~--~dvvii~vp~~~~~~~ 72 (291)
|||||||+|.++ ......+.+.+. . |-++|+++++++.+.++ |+ ..+++.++++++ .|+|++|+|+..+.+-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~ 83 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAEL 83 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHH
Confidence 589999999555 568888888663 4 55779999999888765 66 478899998875 5999999999888776
Q ss_pred HHhccCccccccCCCcEEEEc--CCCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVFDKGGVLEQICPGKGYIDM--STVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~--s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+. ..+..|+.|+-- -+......+++.+...+.+..+
T Consensus 84 ~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 84 AL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 65 334456555531 1234556667766666655544
No 178
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.30 E-value=1.9e-06 Score=74.53 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=70.0
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcchhHHHHHC----CCc--ccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----GAT--VGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~~----g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|..+...+..+... -.+|++|+|++++++.+.+. +.. .+++.+++++++|+|+.|++..+ .+
T Consensus 130 ~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~ 206 (315)
T PRK06823 130 AIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PL 206 (315)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ce
Confidence 689999999999999988763 24799999999998876642 333 36789999999999999996532 33
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
+ + ..++++|+.|...++..|..
T Consensus 207 ~---~--~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 207 L---Q--AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred e---C--HHHcCCCcEEEecCCCCccc
Confidence 3 1 23567899998888777654
No 179
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.29 E-value=5.3e-06 Score=73.96 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=70.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
+++|+|+|.+|..++..+...|.+|+++++++.+.+.....|.... +.++.++.+|+||.|+..+..+..- ..
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l 276 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HF 276 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HH
Confidence 7899999999999999999999999999999999888888887554 4567788999999999665444332 23
Q ss_pred cccCCCcEEEEcCCC
Q 022834 82 EQICPGKGYIDMSTV 96 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~ 96 (291)
..++++.++++.+..
T Consensus 277 ~~mk~GgilvnvG~~ 291 (413)
T cd00401 277 EQMKDGAIVCNIGHF 291 (413)
T ss_pred hcCCCCcEEEEeCCC
Confidence 456788888887754
No 180
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.29 E-value=4.1e-06 Score=72.75 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=62.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHH--------CC--Ccc--cCCHHHHHhhCCEEEEec--C
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA--------HG--ATV--GGSPAEVIKKCTITIGML--A 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~--------~g--~~~--~~~~~~~~~~~dvvii~v--p 65 (291)
+||+|||+|.||..++..++..| .++.++|+++++++...- .+ ..+ ..+.+ .+++||+||++. |
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~ 84 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQ 84 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 69999999999999999999888 689999998876542111 01 122 34555 678999999998 2
Q ss_pred C-H------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 66 D-P------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 66 ~-~------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
. + ..+.++. +.+.+.. ++.+++..||..
T Consensus 85 ~~~g~~r~dll~~n~~i~~~i~---~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 85 RKEEMTREDLLTINGKIMKSVA---ESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecChH
Confidence 2 1 2244555 4555553 666667666643
No 181
>PLN02494 adenosylhomocysteinase
Probab=98.29 E-value=5.2e-06 Score=74.49 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=72.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHH-HHHHhccCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~-~~v~~~~~~l 80 (291)
+++|+|+|.+|..++..+...|.+|+++++++.+.......|..+. +.+++++.+|++|.++.....+ .+.
T Consensus 256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~------- 327 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDH------- 327 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHH-------
Confidence 6899999999999999999999999999999877666666676654 6778889999999987553322 223
Q ss_pred ccccCCCcEEEEcCCC-CHHHHHHHHH
Q 022834 81 LEQICPGKGYIDMSTV-DHETSIKISR 106 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~-~~~~~~~~~~ 106 (291)
...++++.++++.+.. .......+.+
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 3456788999998874 2333344433
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.25 E-value=2.2e-06 Score=74.81 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=66.8
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CCc--ccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.+|...+..|.. .+ .+|++|+|++++++.+.+. |.. ..++.++++.++|+|+.|+|... .
T Consensus 131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p 207 (326)
T TIGR02992 131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---P 207 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---c
Confidence 68999999999999999974 56 3699999999999887653 443 35788888999999999997633 2
Q ss_pred HHhccCccccccCCCcEEEEcCCCCH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
++ . ...+++++.+...+.-.|
T Consensus 208 ~i---~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 208 IL---H--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred Ee---c--HHHcCCCcEEEeeCCCCC
Confidence 33 1 134668888776655444
No 183
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.24 E-value=4e-06 Score=65.58 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=56.0
Q ss_pred eEEEEecChh-hHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|||+|.| |..++..|.+.|.+|++.+|+. .+..+.+.++|+||.|++.+. ++ .
T Consensus 46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii---~-- 102 (168)
T cd01080 46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV---K-- 102 (168)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee---c--
Confidence 7999999997 8889999999999999999873 245667889999999997753 22 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
...++++.+++|++..
T Consensus 103 ~~~~~~~~viIDla~p 118 (168)
T cd01080 103 GDMVKPGAVVIDVGIN 118 (168)
T ss_pred HHHccCCeEEEEccCC
Confidence 1134567888888755
No 184
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.23 E-value=2e-05 Score=68.78 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=78.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--CCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCC----HHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLAD----PAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~----~~~~~~ 72 (291)
.||+|||+ .||...+..+.+. ++++. ++|+++++++.+.++ |+..+++.++++.+.|++++++|+ ..+.+-
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 48999999 7899999999875 46755 679999999988865 788889999999888998888854 244433
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+. ..+..|+.|+----......+++.+...+.++.+.
T Consensus 83 a~-------~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 AR-------ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH-------HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 33 23446665554333346777778777777777655
No 185
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.23 E-value=3.4e-06 Score=73.76 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=65.2
Q ss_pred CeEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC-----CCc--ccCCHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
++|+|||+|.+|...+..+.. .+ .+|++|+|++++++.+.+. |+. ..++.++++.++|+|+.|+|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~--- 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE--- 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---
Confidence 479999999999999988875 44 5799999999999988752 443 35788888999999999997643
Q ss_pred HHHhccCccccccCCCcEEEEcCCCC
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
.++ . ...+++++.|..+....
T Consensus 210 p~i---~--~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 PIL---K--AEWLHPGLHVTAMGSDA 230 (330)
T ss_pred cEe---c--HHHcCCCceEEeeCCCC
Confidence 233 1 12355777666544433
No 186
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.22 E-value=1.5e-06 Score=78.57 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=54.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
++|+|||+|.||..++..|...|. +|++++|++++++.+.+. |... ..+..+.+.++|+||.|+|.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 479999999999999999999997 799999999988777654 4322 2344566778999999997654
No 187
>PRK11579 putative oxidoreductase; Provisional
Probab=98.20 E-value=2.4e-05 Score=68.95 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=71.3
Q ss_pred CeEEEEecChhhH-HHHHHHHh-CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
+||||||+|.+|. ..+..+.+ .+.++. ++|+++++.. ... +...+++.+++++ +.|+|++|+|...+.+-+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 4899999999998 45666655 367765 6798876643 122 4567789999985 5799999999988877666
Q ss_pred hccCccccccCCCcEEE-E-cCCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FDKGGVLEQICPGKGYI-D-MSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv-~-~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
. .+..|+.|+ . --.......+++.+...+.++.+
T Consensus 83 ---~----al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 83 ---A----ALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred ---H----HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 2 234555544 3 11234456666766666666544
No 188
>PRK06046 alanine dehydrogenase; Validated
Probab=98.20 E-value=3e-06 Score=73.93 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=68.1
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHC-----C--CcccCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
+++|||+|.+|...+..+... + ..|.+|+|++++.+.+.+. + +..+++.+++++ +|+|++|+|... .
T Consensus 131 ~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P 206 (326)
T PRK06046 131 VVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---P 206 (326)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---c
Confidence 699999999999999999753 3 3588999999998877653 3 334678888886 999999998742 3
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
++ . ..++++|+.|..+++..|..
T Consensus 207 ~~---~--~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 207 VV---K--AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred Ee---c--HHHcCCCCEEEecCCCCCcc
Confidence 33 1 23467889888777766643
No 189
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.18 E-value=5e-06 Score=71.03 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=73.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-----C-Ccc--cCCHHHHHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G-ATV--GGSPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g-~~~--~~~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
++.|||+|.+|.+++..|...|. +|+++||+.++++.+.+. . ..+ .++..+.+.++|+||-|+|-...-..
T Consensus 129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~ 208 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHP 208 (284)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCC
Confidence 68999999999999999999997 799999999999888653 1 111 23344566789999999875421100
Q ss_pred HHhccCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 73 VVFDKGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 73 v~~~~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
- ..+. ..++++.+++|+.-....+ .+.+...++|+..++.
T Consensus 209 ~----~~~~~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 209 G----LPLPAELLRPGLWVADIVYFPLET--ELLRAARALGCRTLDG 249 (284)
T ss_pred C----CCCCHHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEecC
Confidence 0 0111 2356777888877553322 2334455667666543
No 190
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.18 E-value=1.3e-05 Score=68.05 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=63.6
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchhH--HHHHCCCcc-cCCHHHHHh--hCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCD--ELVAHGATV-GGSPAEVIK--KCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~--~l~~~g~~~-~~~~~~~~~--~~dvvii~vp~~~~~~~v 73 (291)
+||+|||+|.+|..+...+.+ .++++. ++++++++.. ...+.|+.. .++.+++++ +.|+|++|+|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 589999999999998777764 456755 6788887633 334457664 447777775 578899999998776554
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. ..+..|+.+++.+..
T Consensus 82 ~-------~al~aGk~VIdekPa 97 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPA 97 (285)
T ss_pred H-------HHHHcCCEEEECCcc
Confidence 4 234577888876654
No 191
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.18 E-value=8.9e-06 Score=70.23 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=59.8
Q ss_pred EEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHH----HHC----C--Ccc--cCCHHHHHhhCCEEEEecCCH--
Q 022834 3 VGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDEL----VAH----G--ATV--GGSPAEVIKKCTITIGMLADP-- 67 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l----~~~----g--~~~--~~~~~~~~~~~dvvii~vp~~-- 67 (291)
|+|||+|.||..++..|+.+|+ +|+++|+++++.+.. .+. + .++ ..+. +.+++||+||+++..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 6899999999999999998876 999999998754321 111 1 122 2344 4578999999987321
Q ss_pred -------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 68 -------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 68 -------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
..+++++ +++.+.. ++.+++..||..
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~---~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVA---ENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCcH
Confidence 1233444 4555554 556666666543
No 192
>PRK04148 hypothetical protein; Provisional
Probab=98.17 E-value=1.7e-05 Score=59.07 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=68.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-----cCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+||..||+| .|..++..|++.|++|+..|.+++..+.+.+.+..+ .+...++-+++|+|.-+=|.++-...++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 479999999 999999999999999999999999988887776543 2333466778999988887766555555
Q ss_pred ccCccccccCCCcEEEEcCCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
++...+..+-+|-.+|+-.
T Consensus 96 ---~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 96 ---ELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ---HHHHHcCCCEEEEcCCCCC
Confidence 5666564445555555543
No 193
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.17 E-value=4.5e-06 Score=71.19 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=73.9
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHCC-----CcccCCHHHHHhhCCEEEEecCCHHHHH-HHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIKKCTITIGMLADPAAAL-SVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~~dvvii~vp~~~~~~-~v~ 74 (291)
++.|+|+|.+|.+++..|...| .+|++++|+.++++.+.+.. +....+..+.+.++|+||-|+|....-. ...
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~ 204 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLP 204 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCC
Confidence 6889999999999999999999 78999999999988876542 1121123355678999999997654210 000
Q ss_pred hccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+-....++++.+++|+.-. |... .+.+...+.|+.+++.
T Consensus 205 ---~~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~~~~~G 243 (278)
T PRK00258 205 ---PLPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGARTIDG 243 (278)
T ss_pred ---CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcCeecCC
Confidence 1011345678899998664 3222 2334455667665543
No 194
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=8.3e-06 Score=67.21 Aligned_cols=67 Identities=19% Similarity=0.419 Sum_probs=51.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH--CCCcc---cCCHHHH-----HhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATV---GGSPAEV-----IKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--~g~~~---~~~~~~~-----~~~~dvvii~vp~~ 67 (291)
|+|.|||+|.+|..++..|.+.||+|+++++++++++.... ....+ ..+..+. +.++|+++.++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 89999999999999999999999999999999999888444 33222 1122233 35689999998553
No 195
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.16 E-value=1.8e-05 Score=77.86 Aligned_cols=107 Identities=19% Similarity=0.177 Sum_probs=77.7
Q ss_pred eEEEEecChhhHHHHHHHHhCC-Cc-------------EEEEcCCcchhHHHHHC--C---Ccc-cCCHHHHH---hhCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FK-------------VTVWNRTLSKCDELVAH--G---ATV-GGSPAEVI---KKCT 58 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~-------------V~~~~r~~~~~~~l~~~--g---~~~-~~~~~~~~---~~~d 58 (291)
||+|||+|.||...+..|++.. .+ |++.|+++++++.+.+. + +.+ +.+.+++. +++|
T Consensus 571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~D 650 (1042)
T PLN02819 571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVD 650 (1042)
T ss_pred cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCC
Confidence 7999999999999999998753 33 88999999988887663 3 233 45655554 5799
Q ss_pred EEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 59 vvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+|++|+|...+.. +. ...+..++.+++.+ -.......+.+...+.|+.++
T Consensus 651 aVIsalP~~~H~~-VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m 700 (1042)
T PLN02819 651 VVISLLPASCHAV-VA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITIL 700 (1042)
T ss_pred EEEECCCchhhHH-HH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEE
Confidence 9999999876643 33 12345667778777 344556677777777787766
No 196
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.15 E-value=1.2e-05 Score=69.81 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=49.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC---------CCcccCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.+|..++..|+..|. ++.++|++.++++...-+ ...+..+..+.+++||+||++..
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 589999999999999999998886 799999988876543321 12333344456789999999864
No 197
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.14 E-value=0.0013 Score=57.59 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=155.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-----C--------------------CcccCCHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G--------------------ATVGGSPAEVIK 55 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g--------------------~~~~~~~~~~~~ 55 (291)
+|-|+|+|..+.-+|..|.+.+. +|-+++|...+.+.+.+. + -.+..+.+++..
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g 82 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEG 82 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcc
Confidence 68999999999999999998764 689999988887765431 1 123456777777
Q ss_pred hCCEEEEecCCHHHHHHHHhccCcccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcC--CcEEEcc-cCCCh-------
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKG--GHFLEAP-VSGSK------- 124 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~------- 124 (291)
+-|.+|+|||. .+-.+|+ +++.. .+++=+.+|.+|....+. .-+...+.+.+ +.++.-. -+|..
T Consensus 83 ~WdtlILavta-DAY~~VL---~ql~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~ 157 (429)
T PF10100_consen 83 EWDTLILAVTA-DAYLDVL---QQLPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQ 157 (429)
T ss_pred cccEEEEEech-HHHHHHH---HhcCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccCCC
Confidence 88999999966 5567788 56653 344445666666553332 12333444432 2233211 11110
Q ss_pred H-----hhcccceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHH-------------HHH---------
Q 022834 125 Q-----PAETGQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKL-------------VVN--------- 174 (291)
Q Consensus 125 ~-----~~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~-------------~~n--------- 174 (291)
. .+-+.+ +++|. +....+++..+++.+|..+..++.+-.|+.... .-|
T Consensus 158 ~~~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 158 PNRVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred cceehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 0 111122 33333 556688999999999988766665433332111 011
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC-c--ccccc----c--cc-----------
Q 022834 175 --------------MIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA-N--PMFKG----K--GP----------- 220 (291)
Q Consensus 175 --------------~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~-s--~~~~~----~--~~----------- 220 (291)
....-|..++.|.+.+..+.|++.=-+.+++...... . .+.++ + .+
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVR 315 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVR 315 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHH
Confidence 2333467889999999999999887788888764211 0 01100 0 00
Q ss_pred ---ccc--------cCCC---C------------CCcccccHHH-H---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 221 ---TML--------QSNY---A------------PAFPLKHQQK-D---MRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 221 ---~~~--------~~~~---~------------~~~~~~~~~~-d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
-++ ++.| + .-..+..|.+ | +..+...|+.+|+++|.++.+.+.++...+
T Consensus 316 YtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 316 YTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred hhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 000 0000 0 0001233322 2 577889999999999999999998887654
No 198
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.12 E-value=7.1e-06 Score=66.16 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=63.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-----CCcc----cCCH---HHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV----GGSP---AEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~----~~~~---~~~~~~~dvvii~vp~~ 67 (291)
+++.|+|. |.+|..++..|++.|++|++++|+.++++.+.+. +..+ ..+. .+.++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 47899995 9999999999999999999999999888776542 2111 1222 35677899999999765
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
..... ......+++.+++|+.-..+
T Consensus 109 ~~~~~------~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 109 VELLE------KLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred ceech------hhhcccCceeEEEEccCCCC
Confidence 53111 11222334678898765543
No 199
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.12 E-value=6.5e-06 Score=61.05 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=57.1
Q ss_pred eEEEEe-cChhhHHHHHHHHhCC-Cc-EEEEcCCcchhHHHHHC--------CCcccCCHHHHHhhCCEEEEecCCHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNG-FK-VTVWNRTLSKCDELVAH--------GATVGGSPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g-~~-V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~~~dvvii~vp~~~~~ 70 (291)
||+||| +|.+|..+.+.|.++- ++ +.++.++.+.-+.+... ...+.+...+.+.++|+||+|+|. ...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~-~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH-GAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH-HHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch-hHH
Confidence 799999 9999999999999853 34 44566655232333322 122223233445899999999966 444
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+.. +.+ +.++..|||+|..
T Consensus 80 ~~~~---~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA---PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH---HHH---HHTTSEEEESSST
T ss_pred HHHH---HHH---hhCCcEEEeCCHH
Confidence 5555 333 4578899999876
No 200
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.11 E-value=0.00014 Score=59.89 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE---EEcc
Q 022834 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF---LEAP 119 (291)
Q Consensus 43 g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~---~~~~ 119 (291)
|+.+++|..|+++++|++|+-+|.......++ +.+.+++++|.+|.+.+|..|...-++.+.+..+.+.+ ..+.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56778888899999999999999987667777 78889999999999999999887777766665444433 3334
Q ss_pred cCCChHhhcccceEEEec-CCHHHHHHHHHHHHHhccceEeeCC
Q 022834 120 VSGSKQPAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
+.|.+ |+..+--+ .++++.+++-++.+..++..+.+..
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 44444 44322111 2789999999999999998877643
No 201
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.10 E-value=5.3e-06 Score=73.31 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=55.4
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCc--ccCCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvvii~vp~~ 67 (291)
|+.|||+|.||...++.|.++| .+|++.+|+.++++.++++ |.. ..+...+.+.++|+||.|+..+
T Consensus 180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 180 KVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 6899999999999999999999 6799999999999998875 533 3345566778999999998544
No 202
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.10 E-value=3.6e-06 Score=75.84 Aligned_cols=67 Identities=27% Similarity=0.438 Sum_probs=54.0
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-CCcc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
+|+|||+|.||..++..|...| .+|++++|+.++++.+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred EEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 7999999999999999999999 7899999999888766653 3322 2345567789999999996544
No 203
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.09 E-value=1.5e-05 Score=69.27 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=47.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHH--H--HH----CC--Ccc--cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE--L--VA----HG--ATV--GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~--l--~~----~g--~~~--~~~~~~~~~~~dvvii~v 64 (291)
+||+|||+|.||..++..++..|+ +|.++|+++++++. + .. .+ .++ ..+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 489999999999999999999995 89999999885431 1 10 11 122 3454 5678999999976
No 204
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.09 E-value=4.9e-06 Score=73.72 Aligned_cols=93 Identities=23% Similarity=0.360 Sum_probs=64.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCcc---c---CCHHHHHhhCCEEEEecCCHHH-HHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV---G---GSPAEVIKKCTITIGMLADPAA-ALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~---~~~~~~~~~~dvvii~vp~~~~-~~~v 73 (291)
++.|||+|.+|...+..+...|.+|+++|+++++.+.+... +..+ . .+..+.+.++|+||.|++-+.. ...+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~l 248 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKL 248 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcC
Confidence 68999999999999999999999999999999888777654 3221 1 1334566789999999732110 1111
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+ . ++....++++.+|+|++..
T Consensus 249 i-t-~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 249 V-S-NSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred c-C-HHHHhcCCCCCEEEEEecC
Confidence 1 1 2233445688899998754
No 205
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=98.09 E-value=5.6e-06 Score=64.23 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=49.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCc-----cc--CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-----VG--GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~~dvvii~vp 65 (291)
|||+|||+ |..|+.|.....+.||+|+.+.||+++...+ ++++ +. ++..+.+..-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 99999998 9999999999999999999999999887654 2221 11 233356667899998873
No 206
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=98.08 E-value=8.4e-05 Score=54.49 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=54.8
Q ss_pred EEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----CCHHHH----HhhCCEEEEecCCHHHHHHHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvvii~vp~~~~~~~v~ 74 (291)
|.|+|+|.+|..++..|.+.+.+|++++++++..+.+.+.|..+. .+.+.+ +++++.++++++++..--.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 579999999999999999977799999999999999999885542 122221 246899999997765544444
No 207
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.08 E-value=4.4e-06 Score=72.38 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=60.4
Q ss_pred eEEEEecChhhHHHHHHHHh-CC-CcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|..|...+..+.. .+ .+|.+|+|++++++.+.+. + +..+++.++++++||+|+.|+|.... ..+
T Consensus 130 ~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P~ 208 (313)
T PF02423_consen 130 TLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-APV 208 (313)
T ss_dssp EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EES
T ss_pred eEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC-Ccc
Confidence 68999999999999999876 33 4699999999998887653 3 33577899999999999999965331 133
Q ss_pred HhccCccccccCCCcEEEEcCCCCHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHE 99 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~ 99 (291)
+ + ..++++|+.|..++...|.
T Consensus 209 ~---~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 209 F---D--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp B------GGGS-TT-EEEE-S-SSTT
T ss_pred c---c--HHHcCCCcEEEEecCCCCc
Confidence 4 1 2357789998888776664
No 208
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.06 E-value=4.5e-05 Score=71.62 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=71.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---CHHHH-----HhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SPAEV-----IKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~~~-----~~~~dvvii~vp~~~~~~~v 73 (291)
+|.|+|+|++|..+++.|.+.|++|+++|.|+++++.+.+.|..+.. +..+. ++++|.++++++++.....+
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~i 498 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEI 498 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHH
Confidence 57899999999999999999999999999999999999887754311 12222 34789999999776554444
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
. ...... .++..++-.. ..+...+ .+.+.|.+++-.|
T Consensus 499 v---~~~~~~-~~~~~iiar~-~~~~~~~----~l~~~Gad~vv~p 535 (558)
T PRK10669 499 V---ASAREK-RPDIEIIARA-HYDDEVA----YITERGANQVVMG 535 (558)
T ss_pred H---HHHHHH-CCCCeEEEEE-CCHHHHH----HHHHcCCCEEECh
Confidence 4 222222 2333334332 2343333 2345577666554
No 209
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.05 E-value=1.8e-05 Score=70.83 Aligned_cols=113 Identities=28% Similarity=0.363 Sum_probs=73.6
Q ss_pred EEEEecChhhHHHHHHHHhCC-C-cEEEEcCCcchhHHHHHC--CCcc------cC---CHHHHHhhCCEEEEecCCHHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNG-F-KVTVWNRTLSKCDELVAH--GATV------GG---SPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g-~-~V~~~~r~~~~~~~l~~~--g~~~------~~---~~~~~~~~~dvvii~vp~~~~ 69 (291)
|.|+|+|.+|..++..|++.+ + +|++.+|+.++++.+.+. +..+ .. ++.++++++|+||-|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999876 4 899999999999888753 2111 12 2456778999999999664 4
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
-..++ + ..+..+...||.|. ......++.+...+.|..++ ++...-+
T Consensus 80 ~~~v~---~---~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 80 GEPVA---R---ACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp HHHHH---H---HHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hHHHH---H---HHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 44555 2 22446778888433 24455666666667777766 4444433
No 210
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.05 E-value=6.4e-06 Score=71.94 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=68.7
Q ss_pred eEEEEecChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHC----C--CcccCCHHHHHhhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v 73 (291)
+++|||+|..+......+..- . .+|++|+|++++.+.+.+. + +..+++.+++++++|+|+.|+|... -..+
T Consensus 131 ~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~Pv 209 (346)
T PRK07589 131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NATI 209 (346)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCce
Confidence 589999999999998877652 2 4799999999998876642 3 3456899999999999999996422 1233
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHH
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHET 100 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~ 100 (291)
+ + ..++++|+.|..+.+..|..
T Consensus 210 l---~--~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 210 L---T--DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred e---c--HHHcCCCcEEEecCCCCCCc
Confidence 4 1 23567898888777666644
No 211
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.05 E-value=6.4e-06 Score=73.83 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=55.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-C-Ccc--cCCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-ATV--GGSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g-~~~--~~~~~~~~~~~dvvii~vp~~~ 68 (291)
.||.|||+|.||..++..|...|. ++++++|+.++++.+.+. + ... .++..+.+.++|+||.|++.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 379999999999999999999995 699999999999888875 3 222 2344566788999999996654
No 212
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.04 E-value=5.1e-05 Score=71.70 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=73.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---CHHHH-----HhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SPAEV-----IKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~~~-----~~~~dvvii~vp~~~~~~~ 72 (291)
++|.|+|+|++|..+++.|.+.|+++++.|.|+++++.+.+.|..+.. +..+. ++++|.++++++++.....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 368899999999999999999999999999999999999887755421 22222 3478999999988766656
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
++ ....... ++..|+-.+. .+... +.+.+.|...+-
T Consensus 481 i~---~~~r~~~-p~~~IiaRa~-~~~~~----~~L~~~Ga~~vv 516 (601)
T PRK03659 481 IV---ELCQQHF-PHLHILARAR-GRVEA----HELLQAGVTQFS 516 (601)
T ss_pred HH---HHHHHHC-CCCeEEEEeC-CHHHH----HHHHhCCCCEEE
Confidence 65 2333333 4444443333 33333 334455665543
No 213
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.03 E-value=0.00031 Score=58.11 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred CCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE---Ecc
Q 022834 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL---EAP 119 (291)
Q Consensus 43 g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~---~~~ 119 (291)
|+.+++|..|+++++|++|+-+|.......++ +++.+++++|.+|.+.+|..|..+-++.+.+..+.+.+. .+.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 56778888899999999999999887667777 788899999999999999998877777666654444333 333
Q ss_pred cCCChHhhcccceEEEec-CCHHHHHHHHHHHHHhccceEeeCC
Q 022834 120 VSGSKQPAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLGE 162 (291)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~ll~~~g~~~~~~~~ 162 (291)
+.|.+ ++..+.-+ .++++.+++-++.+..++..+.+..
T Consensus 203 VPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA 241 (340)
T TIGR01723 203 VPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPA 241 (340)
T ss_pred CCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 43433 23222222 2889999999999999998877543
No 214
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.03 E-value=2.1e-05 Score=69.12 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHHC-----C---Cccc-CCHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-----G---ATVG-GSPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-----g---~~~~-~~~~~~~~~~dvvii~vp~~~ 68 (291)
|||+|+|+ |.+|..+.+.|.++ ++++. ++++....-+.+.+. + ..+. .+.+++.+++|++|+|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 79999998 99999999999976 56777 555443222222211 1 1111 144555568999999998865
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+ .++. ..+ ...|..|||+|+.
T Consensus 81 s-~~~~---~~~---~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S-AELA---PEL---LAAGVKVIDLSAD 101 (346)
T ss_pred H-HHHH---HHH---HhCCCEEEeCChh
Confidence 4 4444 233 3467899999976
No 215
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=0.0036 Score=53.16 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=151.2
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC--------------------C----CcccCCHHHHHhh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH--------------------G----ATVGGSPAEVIKK 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~--------------------g----~~~~~~~~~~~~~ 56 (291)
++-++|+|.+..-+|..|..+| .++-+++|-.-+.+++.+. | -....+++++..+
T Consensus 6 ~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~~d 85 (431)
T COG4408 6 PVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAVGD 85 (431)
T ss_pred ceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhhch
Confidence 6889999999999999999887 5788888866666655441 1 0224567777777
Q ss_pred CCEEEEecCCHHHHHHHHhccCccc-cccCCCcEEEEcCC--CCHHHHHHHHHHHHhcCCc------------EEEcccC
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVL-EQICPGKGYIDMST--VDHETSIKISRAITSKGGH------------FLEAPVS 121 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~-~~l~~~~~vv~~s~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 121 (291)
-+.+|+|||. .+-.+++ +++. ..++.-+.+|.+|. ++....+.....+. ..+. +++..-.
T Consensus 86 wqtlilav~a-DaY~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~~p 160 (431)
T COG4408 86 WQTLILAVPA-DAYYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAEQP 160 (431)
T ss_pred hheEEEEeec-HHHHHHH---hcCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeecccCc
Confidence 8999999976 5667788 5553 23444445554444 33334444443332 2222 2321100
Q ss_pred CChHh---hcccceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHH-----------------------
Q 022834 122 GSKQP---AETGQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV----------------------- 172 (291)
Q Consensus 122 ~~~~~---~~~g~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~----------------------- 172 (291)
+.. +-+.+ ++.|. +....+.+..+++..|..+..+..+-.|+.....
T Consensus 161 --~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~ 236 (431)
T COG4408 161 --NRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQR 236 (431)
T ss_pred --chHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCC
Confidence 111 11112 34443 5566778999999999887666664444322111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC--ccccccc-------ccc---------
Q 022834 173 -------------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA--NPMFKGK-------GPT--------- 221 (291)
Q Consensus 173 -------------~n~~~~~~~~~~~E~~~~~~~~g~~~~~~~~~~~~~~~~--s~~~~~~-------~~~--------- 221 (291)
...+..-+..++.|.+++..+.|+..=.+..+++..... ..++.+. .+.
T Consensus 237 p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfV 316 (431)
T COG4408 237 PQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFV 316 (431)
T ss_pred CceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHH
Confidence 012333356788899999999999877777777754211 1111110 000
Q ss_pred ----cccCCCC-C---C----c----------------ccccH-HHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 022834 222 ----MLQSNYA-P---A----F----------------PLKHQ-QKD---MRLALALGDENAVSMPIAAAANEAFKKARS 269 (291)
Q Consensus 222 ----~~~~~~~-~---~----~----------------~~~~~-~~d---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 269 (291)
++-.-|+ | | | .+..| ..| +..+...|...++.+|..+.+...++.+..
T Consensus 317 RYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k 396 (431)
T COG4408 317 RYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALK 396 (431)
T ss_pred HHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 0000011 0 0 0 11112 223 466788999999999999999998888765
No 216
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.00 E-value=2.3e-05 Score=68.84 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=57.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEE-EcCCcchhHHHHHC-----CC--cccCCHHH-HHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVAH-----GA--TVGGSPAE-VIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l~~~-----g~--~~~~~~~~-~~~~~dvvii~vp~~~~ 69 (291)
|||+|||+ |.+|..+++.|.++ ++++.. .++ .+..+.+.+. +. ....+.++ ...++|+||+|+|...+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 58999997 99999999999876 567654 454 2332233221 11 01222222 44679999999988665
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
.+-+. .+ +..|..|||+|+..
T Consensus 82 ~~~v~----~a---~~aG~~VID~S~~f 102 (343)
T PRK00436 82 MDLAP----QL---LEAGVKVIDLSADF 102 (343)
T ss_pred HHHHH----HH---HhCCCEEEECCccc
Confidence 44333 22 34688999999763
No 217
>PRK10206 putative oxidoreductase; Provisional
Probab=98.00 E-value=7.3e-05 Score=65.83 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=69.9
Q ss_pred CeEEEEecChhhH-HHHHHHHh--CCCcEE-EEcCCcchhHHHHHC-CCcccCCHHHHHh--hCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGLGIMGK-AISMNLLR--NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~--~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v 73 (291)
+||||||+|.++. .....+.. .++++. ++|+++++.+..... +...+++.+++++ +.|+|++|+|...+.+-+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 4899999999775 34554533 356765 679987654323233 3667789999985 579999999998887766
Q ss_pred HhccCccccccCCCcEE-EEc-CCCCHHHHHHHHHHHHhcCCcEE
Q 022834 74 VFDKGGVLEQICPGKGY-IDM-STVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~v-v~~-s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
. . .+..|+.| +.- -.......+++.+...+.++.+.
T Consensus 82 ~---~----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 82 K---R----ALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred H---H----HHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 5 2 23344443 331 12244566777776666665543
No 218
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.00 E-value=1.8e-05 Score=72.33 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH-CCCccc----CC---HHHH-HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVG----GS---PAEV-IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~----~~---~~~~-~~~~dvvii~vp~~~ 68 (291)
|+|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+ .+..+. .+ ..++ ++++|.+++++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 89999999999999999999999999999999999988876 443321 12 2233 467999999997644
No 219
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.00 E-value=1.2e-05 Score=71.24 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=63.8
Q ss_pred eEEEEecChhhHHHHHHHHhC--C-CcEEEEcCCcchhHHHHHC------C---CcccCCHHHHHhhCCEEEEecCCHH-
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--G-FKVTVWNRTLSKCDELVAH------G---ATVGGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g-~~V~~~~r~~~~~~~l~~~------g---~~~~~~~~~~~~~~dvvii~vp~~~- 68 (291)
+++|||+|.++......+..- . .+|.+|+|++++++.+.+. + +.++++.++++++||+|+.|++...
T Consensus 157 ~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~ 236 (379)
T PRK06199 157 VVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETG 236 (379)
T ss_pred EEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCC
Confidence 689999999999999998862 2 3799999999998876542 2 4457899999999999999996432
Q ss_pred --HHHHHHhccCccccccCCCcEEEE
Q 022834 69 --AALSVVFDKGGVLEQICPGKGYID 92 (291)
Q Consensus 69 --~~~~v~~~~~~l~~~l~~~~~vv~ 92 (291)
....++ + ..++++|+.|..
T Consensus 237 ~~s~~Pv~---~--~~~lkpG~hv~~ 257 (379)
T PRK06199 237 DPSTYPYV---K--REWVKPGAFLLM 257 (379)
T ss_pred CCCcCcEe---c--HHHcCCCcEEec
Confidence 112333 1 235678887764
No 220
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.99 E-value=3.9e-05 Score=66.40 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=60.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC-----------CCcccCCHHHHHhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH-----------GATVGGSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~-----------g~~~~~~~~~~~~~~dvvii~vp~~ 67 (291)
+||+|||+|.+|..++..|+..|. ++.++|+++++++....+ .+....+.++ +++||+||++...+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999998774 699999988766433211 1122245554 78999999976321
Q ss_pred H---------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 68 A---------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 68 ~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. -++++. +.+.+. .++.+++..||-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~---~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGII---PKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEccCh
Confidence 1 133343 444444 366777776654
No 221
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=9.4e-05 Score=63.20 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=82.0
Q ss_pred eEEEEecChhhHHHHHHHHh---CCCcEE-EEcCCcchhHHHHHC-C---CcccCCHHHHHhhC--CEEEEecCCHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR---NGFKVT-VWNRTLSKCDELVAH-G---ATVGGSPAEVIKKC--TITIGMLADPAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~---~g~~V~-~~~r~~~~~~~l~~~-g---~~~~~~~~~~~~~~--dvvii~vp~~~~~~ 71 (291)
|+||+|+|.|+.-+++.|.- .+|.|+ +++|+.+++..+++. + .+...+.++++++. |+|.+.+|.+++.+
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~e 87 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYE 87 (351)
T ss_pred EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHH
Confidence 79999999999999999864 468766 669999999888765 3 46788999999865 99999999998876
Q ss_pred HHHhccCccccccCCCc-EEEEc-CCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 72 SVVFDKGGVLEQICPGK-GYIDM-STVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~-~vv~~-s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
-+. ..+..++ +++.- -......++++.+....+|+.+.+.-
T Consensus 88 vv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~ 130 (351)
T KOG2741|consen 88 VVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGL 130 (351)
T ss_pred HHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeee
Confidence 655 1222333 44431 12345677888888888888776643
No 222
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.98 E-value=3.3e-05 Score=69.86 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=71.6
Q ss_pred CeEEEEecChhhHHHHHHHHhC--------C--Cc-EEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--------G--FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--------g--~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~ 67 (291)
+||+|+|+|.||..++..|.++ | .+ +.++++++++...+...+..++++.++++. +.|+|+.|++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 3799999999999999888653 3 34 346688876644322224456778888885 469999998653
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccC
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVS 121 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 121 (291)
....+.+ ...+..|+.|+..... .....+++.+...+.++.+. .+.+.
T Consensus 84 ~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ 133 (426)
T PRK06349 84 EPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVA 133 (426)
T ss_pred hHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEee
Confidence 3222222 3445677887743221 12344556666666777665 44333
No 223
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.98 E-value=5.5e-05 Score=64.45 Aligned_cols=89 Identities=13% Similarity=0.186 Sum_probs=63.5
Q ss_pred CeEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchh--HHHHHCCCcc-cCCHHHHHh-----hCCEEEEecCCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DELVAHGATV-GGSPAEVIK-----KCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~--~~l~~~g~~~-~~~~~~~~~-----~~dvvii~vp~~~~~ 70 (291)
+||+|||+|.+|..+...+.+ .+.++. ++++++++. +...+.|+.. .++.+++++ +.|+||+++|...+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~ 84 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV 84 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence 489999999999998888775 356655 678887643 3334457765 467888874 478899999876654
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+... .....|+.++|.+..
T Consensus 85 e~a~-------~a~eaGk~VID~sPA 103 (302)
T PRK08300 85 RHAA-------KLREAGIRAIDLTPA 103 (302)
T ss_pred HHHH-------HHHHcCCeEEECCcc
Confidence 4333 234578888988765
No 224
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.97 E-value=0.00023 Score=68.24 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=95.1
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE-EcccCCChHhh--------ccc
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPA--------ETG 130 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~g 130 (291)
||+|+|- ..+.+++ +++.+.++++++|.|.++......+.+.+.+......|+ .+|+.|....- ..+
T Consensus 1 vila~Pv-~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 6899955 6788888 788888989999999999988777777766544335688 88998886543 356
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHH
Q 022834 131 QLVILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFS 185 (291)
Q Consensus 131 ~~~~~~~g---~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~ 185 (291)
...+++.. +.+.++.+.+++..+|.+++.+++..+...+-++..+......++..
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~ 134 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVE 134 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66667643 57788999999999999999998888888888888876555555543
No 225
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=3.7e-05 Score=65.02 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=58.3
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|..++..|.+.|.+|+++++.. .++.+.+++||+||.+++.+.-+..
T Consensus 160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~-------- 217 (286)
T PRK14175 160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK-------- 217 (286)
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH--------
Confidence 799999999 99999999999999999998642 3567788999999999988542221
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++.+|||.+..
T Consensus 218 -~~vk~gavVIDvGi~ 232 (286)
T PRK14175 218 -DVVKEGAVIIDVGNT 232 (286)
T ss_pred -HHcCCCcEEEEcCCC
Confidence 246788999998764
No 226
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.92 E-value=0.00012 Score=59.33 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=48.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCC-CcccCC-H-HHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATVGGS-P-AEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g-~~~~~~-~-~~~~~~~dvvii~vp~~~ 68 (291)
.+|.|||.|.+|...+..|.+.|++|++++++. +.+..+.+.+ +..... . .+.+.++|+||.|+.++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 379999999999999999999999999998754 2334454443 222111 1 234568999999996654
No 227
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.91 E-value=4.2e-05 Score=66.23 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=46.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc--EEEEcCCc--chhHHHH----H----CC--Ccc--cCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK--VTVWNRTL--SKCDELV----A----HG--ATV--GGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~--V~~~~r~~--~~~~~l~----~----~g--~~~--~~~~~~~~~~~dvvii~ 63 (291)
|||+|+|+ |.+|..++..|+..|+. |+++|+++ ++++... + .+ ..+ ..+. +.++++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 89999998 99999999999999864 99999954 4432211 1 12 122 2344 458899999999
Q ss_pred cC
Q 022834 64 LA 65 (291)
Q Consensus 64 vp 65 (291)
+.
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 228
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.90 E-value=0.00011 Score=60.69 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=65.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC---cEEEEcCC----cchh-------HHHHHC-CC-cccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRT----LSKC-------DELVAH-GA-TVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~---~V~~~~r~----~~~~-------~~l~~~-g~-~~~~~~~~~~~~~dvvii~v 64 (291)
+||.|+|+|.+|..++..|.+.|. +++++||+ .++. +.+.+. +. ....+..+.++++|++|-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 479999999999999999999996 59999998 4443 223222 11 11135667778899999999
Q ss_pred CCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
|.....++.+ +.+.++.+|+++++-.+ +.+.+...+.+..
T Consensus 106 ~~G~~~~~~l-------~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 106 RPGVVKKEMI-------KKMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCCCCCHHHH-------HhhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 6322122333 22336678888884433 2333334444554
No 229
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.89 E-value=6.6e-05 Score=65.83 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEE-EcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv 59 (291)
|||+|+|+|+||..+++.+.+. ++++.. .+++++....+.. .++.+..+.+++..++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5999999999999999998864 567664 4666544443322 133445567777778999
Q ss_pred EEEecCCHHHHHHHHhccCccccccCCCcEEEEcCC
Q 022834 60 TIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 60 vii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
||.|+|...+ .+.. + .+++.|+.+|+.+.
T Consensus 82 VIdaT~~~~~-~e~a---~---~~~~aGk~VI~~~~ 110 (341)
T PRK04207 82 VVDATPGGVG-AKNK---E---LYEKAGVKAIFQGG 110 (341)
T ss_pred EEECCCchhh-HHHH---H---HHHHCCCEEEEcCC
Confidence 9999977544 3333 1 23445666666544
No 230
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.88 E-value=3.6e-05 Score=56.51 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=69.4
Q ss_pred CeEEEEe----cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLG----LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG----~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
.+|+||| .+.+|..+...|.++|++|+.++...+.. .|...+.++.|.-...|++++++ .+..+.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~-~~~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCV-PPDKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEc-CHHHHHHHH--
Confidence 3799999 68999999999999999999998765443 27788889988447899999999 457777787
Q ss_pred cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+++... .-+.+++..+ ...+++.+...+.|+.++..
T Consensus 73 -~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 73 -DEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred -HHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 555443 3445656444 23355666666778777643
No 231
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.88 E-value=5.2e-05 Score=64.21 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=63.1
Q ss_pred EEEEec-ChhhHHHHHHHHhCC----CcEEEEcCCcchhHHHHHC-----------CCcccCCHHHHHhhCCEEEEecCC
Q 022834 3 VGFLGL-GIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAH-----------GATVGGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 3 I~iIG~-G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~~-----------g~~~~~~~~~~~~~~dvvii~vp~ 66 (291)
|+|||+ |.||..++..|+..| .++.++|+++++++....+ .+...++..+.+++||+||++...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999988 6899999998776543321 122345557888999999996522
Q ss_pred H---------------HHHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 67 P---------------AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 67 ~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+ ..++++. +++.+.. ++..++..|+-.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIG---DNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecCcH
Confidence 1 1234444 4455444 667777766543
No 232
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.88 E-value=7.3e-05 Score=64.49 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=61.8
Q ss_pred EEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHHHC---------CCcc--cCCHHHHHhhCCEEEEecCCHH-
Q 022834 3 VGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATV--GGSPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~---------g~~~--~~~~~~~~~~~dvvii~vp~~~- 68 (291)
|+|||+|.+|..++..|+..| ++++++|+++++++....+ ...+ ..+ .+.+++||+||++...+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 689999999999999999988 6899999998877655432 1122 233 457789999999986432
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+.- ++..++..|+-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~---~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 80 PGETRLDLINRNAPILRSVI---TNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEccCh
Confidence 133444 4444444 66667766653
No 233
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.86 E-value=0.00015 Score=68.76 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=72.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC---CHHHHH-----hhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SPAEVI-----KKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~~~~~-----~~~dvvii~vp~~~~~~~v 73 (291)
+|-|+|+|++|..+++.|.+.|+++++.|.|+++++.+++.|..+.. +..+.+ +++|.+++++++++....+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i 481 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQL 481 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHH
Confidence 68899999999999999999999999999999999999888765421 222223 4789999999776655555
Q ss_pred HhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+ ....... ++..++-.+ ..+.. ...+.+.|+..+..+
T Consensus 482 ~---~~ar~~~-p~~~iiaRa-~d~~~----~~~L~~~Gad~v~~e 518 (621)
T PRK03562 482 V---ELVKEHF-PHLQIIARA-RDVDH----YIRLRQAGVEKPERE 518 (621)
T ss_pred H---HHHHHhC-CCCeEEEEE-CCHHH----HHHHHHCCCCEEehh
Confidence 5 2223323 333333222 22333 233445677666443
No 234
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.86 E-value=6.4e-05 Score=52.05 Aligned_cols=62 Identities=29% Similarity=0.356 Sum_probs=46.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.+++|+|+|.+|..++..|.+. +.+|.+||| |++|.|++.+..+.+-
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------ 71 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------ 71 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------
Confidence 3799999999999999999998 578999998 9999999665433321
Q ss_pred cccccCCCcEEEEcC
Q 022834 80 VLEQICPGKGYIDMS 94 (291)
Q Consensus 80 l~~~l~~~~~vv~~s 94 (291)
....+.++.+|++++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 012345678888753
No 235
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.78 E-value=0.0001 Score=62.63 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=80.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++||+|+|++|+..+.++..-|-.|+.||.-. ..+...+.|++.. +.+|++..||+|-+-+|-..+.+.++. ++..
T Consensus 148 TLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~tf 223 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DETF 223 (406)
T ss_pred EEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHHH
Confidence 68999999999999999998888888887532 2234556688876 788999999999999987777777773 2334
Q ss_pred cccCCCcEEEEcCCCCHHHHHHHHHHHH
Q 022834 82 EQICPGKGYIDMSTVDHETSIKISRAIT 109 (291)
Q Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~ 109 (291)
...++|--||+++-+...+...+-+.+.
T Consensus 224 A~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 224 AKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred HHhhCCcEEEEecCCceechHHHHHHHh
Confidence 4567899999999887666555655443
No 236
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.78 E-value=9.6e-05 Score=54.36 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=63.7
Q ss_pred ecChhhHHHHHHHHhC----CCcEE-EEcCC--cchhHHHHHCCCcccCCHHHHHh--hCCEEEEecCCHHHHHHHHhcc
Q 022834 7 GLGIMGKAISMNLLRN----GFKVT-VWNRT--LSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 7 G~G~mG~~la~~l~~~----g~~V~-~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp~~~~~~~v~~~~ 77 (291)
|+|.||..++..|.+. +++|. +++|+ ..........+.....+.++++. +.|+||-|++. ..+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999986 45654 56887 11112222235567788999887 89999999754 5555555
Q ss_pred CccccccCCCcEEEEcCCCCH---HHHHHHHHHHHhcCCcE
Q 022834 78 GGVLEQICPGKGYIDMSTVDH---ETSIKISRAITSKGGHF 115 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~---~~~~~~~~~~~~~~~~~ 115 (291)
.+.+++|..||..+...- ...+++.+...+.+..+
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 345668888887765532 35566666666666554
No 237
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.77 E-value=0.00036 Score=53.28 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+...+....-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 68999999999999999999997 699998764433333322 2222222222222 234444444321111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.. ....+.+-++|++++.. ......+.+...+.++.|+++...|
T Consensus 81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 10 11223456788887666 5556677778888888898877554
No 238
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.00012 Score=61.99 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=58.3
Q ss_pred eEEEEecChh-hHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||.|.+ |..++..|.+.|..|+++... +.++.+.++++|+||.++|++.- + .
T Consensus 160 ~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~----i---~-- 216 (285)
T PRK14189 160 HAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV----L---T-- 216 (285)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc----c---C--
Confidence 7899999998 999999999999999987643 23677888999999999987542 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++++.+|||.+..
T Consensus 217 ~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 ADMVKPGATVIDVGMN 232 (285)
T ss_pred HHHcCCCCEEEEcccc
Confidence 1457799999998765
No 239
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.76 E-value=0.00013 Score=56.49 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=52.3
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
+++.|||-+. +|..++..|.++|..|++.+... .+.++.++++|+||.+++.+..++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~-------- 94 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIK-------- 94 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B---------
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccccc--------
Confidence 3789999985 99999999999999999987642 367778899999999998754322
Q ss_pred cccccCCCcEEEEcCCCC
Q 022834 80 VLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~~ 97 (291)
..+++++.+|||++...
T Consensus 95 -~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 -ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp -GGGS-TTEEEEE--CEE
T ss_pred -cccccCCcEEEecCCcc
Confidence 23467999999987663
No 240
>PLN02602 lactate dehydrogenase
Probab=97.75 E-value=0.00018 Score=63.10 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=47.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC---------CCccc--CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH---------GATVG--GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~---------g~~~~--~~~~~~~~~~dvvii~vp 65 (291)
+||+|||+|.+|..++..|...+. ++.++|+++++++...-+ ...+. .+. +.+++||+||++..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCC
Confidence 389999999999999999998775 699999988766533211 12332 234 44789999999863
No 241
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.75 E-value=0.00014 Score=63.84 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=68.2
Q ss_pred CeEEEEecChhhHHHHHHHHhC----------CCcEE-EEcCC----------cchhHHHHHC-CC-c------ccCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN----------GFKVT-VWNRT----------LSKCDELVAH-GA-T------VGGSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~----------g~~V~-~~~r~----------~~~~~~l~~~-g~-~------~~~~~~ 51 (291)
+||+|+|+|.||..++..|.+. +.+|. ++|++ .+++..+.+. +. . ...+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4899999999999999999765 34544 55653 2233333322 21 1 123777
Q ss_pred HHHh--hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccC
Q 022834 52 EVIK--KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVS 121 (291)
Q Consensus 52 ~~~~--~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 121 (291)
+++. +.|+|+.|+|+..+..+... +-+...+..|..||..+.. .....+++.+...+.+..+. .+.+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~--~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~ 154 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPAL--SHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVG 154 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHH--HHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeee
Confidence 7774 57999999986443211110 1123445677777743322 12234566666666677665 34333
No 242
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.73 E-value=8.9e-05 Score=59.93 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=29.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~ 32 (291)
||+|+|+|.||+.++..|++.|. +++++|++
T Consensus 23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999999999999999998 69999988
No 243
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.72 E-value=0.0003 Score=54.57 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=46.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCC-CcccC-CH-HHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-ATVGG-SP-AEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-~~~~~-~~-~~~~~~~dvvii~vp~~~ 68 (291)
+|.|||.|.+|...++.|.+.|++|++++ ++..+.+.+.+ +.+.. .. ++-++++|+||.++.++.
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence 79999999999999999999999999996 44445554432 22211 11 123568899999995543
No 244
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.71 E-value=6.8e-05 Score=58.96 Aligned_cols=95 Identities=21% Similarity=0.168 Sum_probs=62.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc----------------------C----CHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----------------------G----SPAEVI 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----------------------~----~~~~~~ 54 (291)
.||.|+|+|.+|..-+..+...|++|+++|.++++.+.+...+.... . ...+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 37999999999999999999999999999999888877766543211 1 123455
Q ss_pred hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 55 ~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+|+||.+.--...-...++. ++..+.++++.+|+|+|.-
T Consensus 101 ~~~d~vI~~~~~~~~~~P~lvt-~~~~~~m~~gsvIvDis~D 141 (168)
T PF01262_consen 101 APADIVIGNGLYWGKRAPRLVT-EEMVKSMKPGSVIVDISCD 141 (168)
T ss_dssp HH-SEEEEHHHBTTSS---SBE-HHHHHTSSTTEEEEETTGG
T ss_pred hhCcEEeeecccCCCCCCEEEE-hHHhhccCCCceEEEEEec
Confidence 6799999765111111111111 2334456699999999864
No 245
>PRK05086 malate dehydrogenase; Provisional
Probab=97.71 E-value=0.00015 Score=62.76 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=46.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHh---CCCcEEEEcCCcchh---HHHHHCC--Ccc----cCCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR---NGFKVTVWNRTLSKC---DELVAHG--ATV----GGSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~---~g~~V~~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+ |.+|.+++..|.. .++++.++++++... -.+.+.+ ..+ .+++.+.++++|+||+|...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 89999999 9999999998854 246899999875431 1222212 122 23556777899999999843
No 246
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.70 E-value=0.0001 Score=58.61 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=49.5
Q ss_pred EEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cC---CHHHHHhhCCEEEEecCC
Q 022834 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GG---SPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 3 I~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~---~~~~~~~~~dvvii~vp~ 66 (291)
|.|+|+ |.+|..++..|.+.||+|++..|++++.+. ..++++ .. +..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689996 999999999999999999999999998876 334322 12 334567789999999963
No 247
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.69 E-value=0.00015 Score=63.03 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=60.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCc--chhHHHH----HC------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDELV----AH------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~~l~----~~------g~~~~~~~~~~~~~~dvv 60 (291)
+||+|||+ |.+|..++..|...|. ++.++|+++ ++++... +. +..+..+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999998774 799999964 3333221 11 123334556778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++...+. .++++. +++.+.-+++.+++..||
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~---~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQG---KALNKVAKKDVKVLVVGN 130 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHhhCCCCeEEEEeCC
Confidence 99863321 244444 455555433667666664
No 248
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.67 E-value=8.6e-05 Score=63.45 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=51.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCC-----CcccCC---HHHHHhhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHG-----ATVGGS---PAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g-----~~~~~~---~~~~~~~~dvvii~vp~~~ 68 (291)
++.|||+|.+|.+++..|.+.|. +|++++|+.++++.+.+.- +..... ..+.+.++|+||-|+|-..
T Consensus 127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 68899999999999999999996 6999999999999887641 111221 2234467899999987543
No 249
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.00025 Score=59.98 Aligned_cols=72 Identities=24% Similarity=0.311 Sum_probs=59.1
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-|. +|..++..|.+.|..|+++++. +.++.+.++++|+||.+++++.-+.
T Consensus 161 ~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~--------- 217 (285)
T PRK10792 161 NAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP--------- 217 (285)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc---------
Confidence 789999999 9999999999999999999764 2367788899999999997765332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++++.+|||.+..
T Consensus 218 ~~~vk~gavVIDvGin 233 (285)
T PRK10792 218 GEWIKPGAIVIDVGIN 233 (285)
T ss_pred HHHcCCCcEEEEcccc
Confidence 2456799999998754
No 250
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.63 E-value=0.00011 Score=63.87 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=59.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcch--hHH----HHHC------CCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDE----LVAH------GATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~----l~~~------g~~~~~~~~~~~~~~dvv 60 (291)
+||+|||+ |.+|..++..|...|. ++.++|++++. ++. +.+. .+.+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999998775 79999985432 321 1110 123444556778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++-..+. -++++. +++.++-.++.+++..||
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~---~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQG---KALNDVASRDVKVLVVGN 129 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHhhCCCCeEEEEecC
Confidence 99863321 134444 445554434666666664
No 251
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.61 E-value=0.00066 Score=50.48 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCH--HHHHHHHhh----c-CCCccccc
Q 022834 165 NGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDP--RTLLDVLDL----G-GIANPMFK 216 (291)
Q Consensus 165 ~a~~~k~~~n~~~~~~---------------------~~~~~E~~~~~~~~g~~~--~~~~~~~~~----~-~~~s~~~~ 216 (291)
...|.|++.|...+.. ..++.|+..++++.|++. +.+.+.+.. . ...+++++
T Consensus 4 ~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~~~SM~~ 83 (125)
T PF08546_consen 4 RERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPDNRSSMLQ 83 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTTT--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCccccHHH
Confidence 4567788877666553 446779999999998643 323333321 1 11222222
Q ss_pred ccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022834 217 GKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
+. ..+.. ++ .-.-.+++++.|+++|+++|.++.++++++.
T Consensus 84 D~----~~gr~-----tE-id~i~G~vv~~a~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 84 DI----EAGRP-----TE-IDYINGYVVRLAKKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HH----HTTB-------S-HHHTHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HH----HHccc-----cc-HHHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Confidence 11 01110 00 1111478999999999999999999998875
No 252
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.60 E-value=0.00012 Score=63.16 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=60.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhH----HHHHC--CCccc-----CCHHHHHhhCCEEEEecCC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH--GATVG-----GSPAEVIKKCTITIGMLAD 66 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~--g~~~~-----~~~~~~~~~~dvvii~vp~ 66 (291)
|||+|||+ |.+|..++..|+..+. ++.++|++ +++ .+.+- ...+. +++.+.++++|+||++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 89999999 9999999999998884 79999987 322 12221 11222 2235778899999998743
Q ss_pred HH---------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 67 PA---------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 67 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
+. -++++. +.+.++ .++.+++..||-.
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~---~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLA---TAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEccCch
Confidence 21 233344 444444 3677777776653
No 253
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.0002 Score=60.94 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=56.1
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||.|. +|.+++..|.+.|.+|+++++.. .++.+.++++|+||.|++++.- + .
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~----v---~-- 217 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL----I---K-- 217 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc----C---C--
Confidence 789999998 99999999999999999998732 2455666899999999976441 2 1
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
...++++.+++|....
T Consensus 218 ~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 KDWIKQGAVVVDAGFH 233 (283)
T ss_pred HHHcCCCCEEEEEEEe
Confidence 2346788999987644
No 254
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.59 E-value=0.0003 Score=55.57 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||+|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 599999875
No 255
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.58 E-value=0.00033 Score=57.75 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=68.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcC----------CcchhHHHHHC-C-------CcccCCHHHH-HhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEV-IKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~-~~~~dvv 60 (291)
++|+|.|+|.+|..++..|.+.|.+|+ +.|. +.+.+...++. | .... +.+++ -.+||++
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvl 110 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDIL 110 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEE
Confidence 589999999999999999999999988 6676 55555544443 2 1111 22232 2378999
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-|.+...-..+.+ +++ +=++|+.-+|... + .+..+.+.++|+.|+
T Consensus 111 ip~a~~~~i~~~~~---~~l-----~a~~I~egAN~~~-t-~~a~~~L~~rGi~~~ 156 (227)
T cd01076 111 IPAALENQITADNA---DRI-----KAKIIVEAANGPT-T-PEADEILHERGVLVV 156 (227)
T ss_pred EecCccCccCHHHH---hhc-----eeeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence 99986544333343 222 2356676665533 3 556677888888775
No 256
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0002 Score=60.69 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=72.7
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC----CCc-ccCCHHHH--HhhCCEEEEecCCHHHHHH-
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH----GAT-VGGSPAEV--IKKCTITIGMLADPAAALS- 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~----g~~-~~~~~~~~--~~~~dvvii~vp~~~~~~~- 72 (291)
++.|+|+|..+.+++..|++.| .+|++++|+.++++.+.+. +.. ......+. ..++|+||-|||-...-..
T Consensus 128 ~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~ 207 (283)
T COG0169 128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEG 207 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCC
Confidence 6899999999999999999999 5799999999999988764 211 11122211 2258999999986543321
Q ss_pred --HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 73 --VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 73 --v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
.+ . ...++++.++.|+--....+ .+.+...+.|...++.
T Consensus 208 ~~~~----~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~idG 248 (283)
T COG0169 208 DSPV----P-AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCC----c-HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEECc
Confidence 11 1 34566888888875443222 2344455667665544
No 257
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.57 E-value=0.00025 Score=63.86 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=62.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhC-------CC--cEEEEcCCcchhHHHHH----------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN-------GF--KVTVWNRTLSKCDELVA----------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~-------g~--~V~~~~r~~~~~~~l~~----------~g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|+.. +. ++.++|++.++++...- ..+.+..+..+.+++||+||
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV 181 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL 181 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence 8999999 99999999999987 54 68899999888764321 12333345567788999999
Q ss_pred EecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 62 GMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 62 i~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++-..+. -++++. +.+.+...++.+++..||
T Consensus 182 itAG~prkpG~tR~dLl~~N~~I~k~i~---~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 182 LIGAKPRGPGMERADLLDINGQIFAEQG---KALNEVASRNVKVIVVGN 227 (444)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhcCCCeEEEEcCC
Confidence 9864321 134444 445553346666776664
No 258
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.57 E-value=0.00015 Score=62.97 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=66.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC------C--CcEE-EEcCCcchh-------HHH---HHCC-C--cccC--CHHHHH-h
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN------G--FKVT-VWNRTLSKC-------DEL---VAHG-A--TVGG--SPAEVI-K 55 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~------g--~~V~-~~~r~~~~~-------~~l---~~~g-~--~~~~--~~~~~~-~ 55 (291)
|||+|+|+|.+|..+++.|.++ | .+|+ +.|++.... +.+ .+.| . .... +.+++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 8999999999999999999873 3 3433 446553211 121 1212 1 1112 445543 3
Q ss_pred hCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhcCCcEE-EcccC
Q 022834 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFL-EAPVS 121 (291)
Q Consensus 56 ~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 121 (291)
++|++|-|+|....-.... .-+.+.+..|..||..+.... ....++.+...+.+..+. ++.+-
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~ 145 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVA 145 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeee
Confidence 6899999997532111112 223455678888886554321 234555555666677665 55444
No 259
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.55 E-value=0.00018 Score=62.70 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=50.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-------CCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvvii~vp 65 (291)
|||.|.|+ |.+|+.++..|.++||+|++.+|++++...+...++.+. .+..++++++|+||.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 89999985 999999999999999999999998776655554454331 234456778999998763
No 260
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.55 E-value=0.00017 Score=62.27 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=47.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHH----HC-------CCcccCCHHHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-------GATVGGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~----~~-------g~~~~~~~~~~~~~~dvvii~vp 65 (291)
||+|||+|.+|..+|..|...+. ++.++|+++++++... .. .+.+.....+.+++||+||++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999998875 6999999877664322 10 12233334567789999999863
No 261
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00036 Score=58.98 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=58.4
Q ss_pred CeEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.++.|||-|. +|..++..|.+.|..|++++.. +.++.+..+++|+||.++..+.-+.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~-------- 222 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIK-------- 222 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccC--------
Confidence 3789999999 9999999999999999999843 1366778899999999997764322
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
...+++|.+|||.+..
T Consensus 223 -~~~vk~gavVIDvGin 238 (287)
T PRK14176 223 -ADMVKEGAVIFDVGIT 238 (287)
T ss_pred -HHHcCCCcEEEEeccc
Confidence 1246789999998764
No 262
>PRK05442 malate dehydrogenase; Provisional
Probab=97.55 E-value=0.0002 Score=62.33 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=59.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcc--hhHH----HHH------CCCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~~dvv 60 (291)
+||+|||+ |.+|..++..|...+. ++.++|++++ +++. +.+ ....+..+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999887653 7999998543 2321 111 1233444566778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++-..+. -++++. +++.++.+++.+++..||
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~---~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQG---KALNEVAARDVKVLVVGN 131 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHHhCCCCeEEEEeCC
Confidence 99863211 134444 455554445667676664
No 263
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.54 E-value=0.00038 Score=63.77 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=64.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--C---------------C----------HHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--G---------------S----------PAEVI 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~---------------~----------~~~~~ 54 (291)
|+.|+|+|.+|...+..+...|.+|+++|+++++.+.+...|.... + + ..+..
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~ 245 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA 245 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999998887776664430 0 1 22335
Q ss_pred hhCCEEEEec-----CCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 55 KKCTITIGML-----ADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 55 ~~~dvvii~v-----p~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++|++|.|+ |.+.- +. ++....+++|.+|||++..
T Consensus 246 ~~~DIVI~TalipG~~aP~L---it---~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKL---IT---EEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred CCCCEEEECcccCCCCCCee---eh---HHHHhhCCCCCEEEEeeeC
Confidence 6799999988 33211 11 2334556788999998864
No 264
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.53 E-value=0.00014 Score=64.50 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=58.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCC-------CcccCCHH-HHHhhCCEEEEecCCHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATVGGSPA-EVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~~dvvii~vp~~~~~ 70 (291)
|||+|+|+ |..|..+.+.|.++ .++++.+.++...-+.+.... .....+.+ +.++++|+||+|+|.. ..
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s 117 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TT 117 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HH
Confidence 58999998 99999999999987 678888766543332222211 11111112 2247899999999774 44
Q ss_pred HHHHhccCccccccCCCcEEEEcCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++. +. +..+..|||+|+.
T Consensus 118 ~~i~---~~----~~~g~~VIDlSs~ 136 (381)
T PLN02968 118 QEII---KA----LPKDLKIVDLSAD 136 (381)
T ss_pred HHHH---HH----HhCCCEEEEcCch
Confidence 5555 33 2357889999976
No 265
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.52 E-value=0.00025 Score=60.72 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=46.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCC--CcEEEEcCCcchhHHHH----HC------CCcccC-CHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELV----AH------GATVGG-SPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~----~~------g~~~~~-~~~~~~~~~dvvii~v 64 (291)
|||+|||+|.+|.+++..|...+ .++.++|++.++++--. +. ...+.. ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 79999999999999999997765 47999999866554221 11 122222 2245678999999997
No 266
>PRK15076 alpha-galactosidase; Provisional
Probab=97.52 E-value=0.00012 Score=66.22 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=48.1
Q ss_pred CeEEEEecChhhHHHHH--HHH----hCCCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISM--NLL----RNGFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~--~l~----~~g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|+||...+. .++ -.+++|+++|+++++++.... .+ +..+.+..+++++||+||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999966655 554 145689999999988763211 12 2335676788899999999
Q ss_pred ecCC
Q 022834 63 MLAD 66 (291)
Q Consensus 63 ~vp~ 66 (291)
++..
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 9743
No 267
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.51 E-value=0.00018 Score=61.35 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=69.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-----CC---cccC--CHHHHHhhCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GA---TVGG--SPAEVIKKCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g~---~~~~--~~~~~~~~~dvvii~vp~~~~~ 70 (291)
++.|+|+|..|.+++..|++.|. +|++++|+.++++.+.+. +. ...+ +..+....+|+||=|+|-...-
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~ 208 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPA 208 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCC
Confidence 68899999999999999999885 699999999999888653 11 1111 1123456789999999743210
Q ss_pred HHHHhccCcc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 71 LSVVFDKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 71 ~~v~~~~~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..-. .+ ...+.++.++.|+.-....+ .+.+...+.|+..++.
T Consensus 209 ~~~~----~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 251 (283)
T PRK14027 209 HPGT----AFDVSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLDG 251 (283)
T ss_pred CCCC----CCCHHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEcc
Confidence 0000 01 12355667888876443222 2333445556655543
No 268
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.50 E-value=0.00046 Score=59.23 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=67.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCc---chhHHHHHC----C--Ccc--c--CC---HHHHHhhCCEEEEec
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL---SKCDELVAH----G--ATV--G--GS---PAEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~---~~~~~l~~~----g--~~~--~--~~---~~~~~~~~dvvii~v 64 (291)
++.|+|+|.+|.+++..|++.|.+ |++++|+. ++++.+.+. + ... . ++ ..+.+..+|++|-|+
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence 578999999999999999999986 99999986 566555431 1 111 1 11 223345689999999
Q ss_pred CCHHHHH-HHHhccCcc--ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 65 ADPAAAL-SVVFDKGGV--LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 65 p~~~~~~-~v~~~~~~l--~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
|-...-. +- ..+ ...+.++.+++|+.-....+ .+.+...+.|+..++.
T Consensus 208 p~Gm~~~~~~----~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 258 (289)
T PRK12548 208 LVGMKPNDGE----TNIKDTSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTVGG 258 (289)
T ss_pred CCCCCCCCCC----CCCCcHHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeeeCc
Confidence 7543100 00 011 12456778888876543322 2334445556655543
No 269
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.50 E-value=0.00036 Score=61.09 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=67.7
Q ss_pred CeEEEEecChhhHHHHHHHHh--------CCCc--EE-EEcCCcch-------hHHHH---HC-CC--cc-------cCC
Q 022834 1 MEVGFLGLGIMGKAISMNLLR--------NGFK--VT-VWNRTLSK-------CDELV---AH-GA--TV-------GGS 49 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~--------~g~~--V~-~~~r~~~~-------~~~l~---~~-g~--~~-------~~~ 49 (291)
++|+|+|+|.+|..+++.|.+ .|.+ |. +.|++... ...+. +. +. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999999877 4643 33 33543221 11211 11 10 01 115
Q ss_pred HHHHH--hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 50 PAEVI--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 50 ~~~~~--~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
.++++ .++|++|-+++. ....+.+ ...+..+..||..++.. ....+++.+...+.+..+. .+.+.++
T Consensus 83 ~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~G 153 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAG 153 (336)
T ss_pred HHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEecccccc
Confidence 66766 478999999944 4555555 34456778888665541 2344556555556677766 4434433
No 270
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.49 E-value=0.00091 Score=54.72 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCc-EEEEcCCc----------chhHHHHHCC-CcccC-----CHHHH-HhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL----------SKCDELVAHG-ATVGG-----SPAEV-IKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~----------~~~~~l~~~g-~~~~~-----~~~~~-~~~~dvvii 62 (291)
++|+|.|+|++|..++..|.+.|.. |.+.|.+. +..+...+.+ +...+ +.+++ -.+||+++-
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip 103 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP 103 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence 5899999999999999999999885 55678877 5555444432 22111 12232 237999999
Q ss_pred ecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 63 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|.+...-..+.. +.+ +=++|+...|... +. +..+.+.++|+.|+
T Consensus 104 aA~~~~i~~~~a-------~~l-~a~~V~e~AN~p~-t~-~a~~~L~~~Gi~v~ 147 (217)
T cd05211 104 CALGNVIDLENA-------KKL-KAKVVAEGANNPT-TD-EALRILHERGIVVA 147 (217)
T ss_pred ccccCccChhhH-------hhc-CccEEEeCCCCCC-CH-HHHHHHHHCCcEEE
Confidence 986543222222 222 2356666555432 22 45667778886554
No 271
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00044 Score=59.41 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=56.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC-----C---Cccc-CCHHHH-HhhCCEEEEecCCHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-----G---ATVG-GSPAEV-IKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-----g---~~~~-~~~~~~-~~~~dvvii~vp~~~ 68 (291)
|||+|+|+ |.-|..|.+.|..+- .++.++..+..+-+.+.+. | .... .+.+++ .++||+||+|+|...
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence 59999987 999999999998764 4666665443222233322 1 1111 133333 445999999999866
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
..+-+- .+ +.++..|||+|..
T Consensus 83 s~~~v~----~l---~~~g~~VIDLSad 103 (349)
T COG0002 83 SAELVP----EL---LEAGCKVIDLSAD 103 (349)
T ss_pred HHHHHH----HH---HhCCCeEEECCcc
Confidence 543332 22 3356669999986
No 272
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.47 E-value=0.0019 Score=52.46 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=49.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hhHHHHHCC-Cccc---CCHHHHHhhCCEEEEecCCH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADP 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~---~~~~~~~~~~dvvii~vp~~ 67 (291)
+|.|||.|.+|..-++.|.+.|.+|++++.+.. ..+.+.+.| +... .. .+.+.++++||.|+.++
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 799999999999999999999999999987643 345555553 3321 12 33467899999998665
No 273
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.47 E-value=0.00085 Score=50.80 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=48.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|+|- ...|..++..|.+.|.+|++.+++. .+.++.+++||+|+.+++.+.- + +
T Consensus 30 ~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~----i---~-- 86 (140)
T cd05212 30 KVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK----V---P-- 86 (140)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc----c---C--
Confidence 4555554 4456666666666666666665431 2677888999999999977532 2 1
Q ss_pred ccccCCCcEEEEcCCCC
Q 022834 81 LEQICPGKGYIDMSTVD 97 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~~ 97 (291)
..++++|.+|+|.+...
T Consensus 87 ~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEWIKPGATVINCSPTK 103 (140)
T ss_pred HHHcCCCCEEEEcCCCc
Confidence 34578999999877654
No 274
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.46 E-value=0.00031 Score=61.58 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=56.5
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcE---EEEcCCcchhHHHHHCC--CcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|+|+ |..|..+.+.|.+++|++ ....+..+.-+.+.-.+ +.+.+...+.++++|+||+|+|.. ...+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHH
Confidence 69999987 999999999999988863 55544333322222112 222221122346899999999774 344444
Q ss_pred hccCccccccCCCcEEEEcCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++ +..|..|||+|..
T Consensus 81 ---~~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ---PKA---AAAGAVVIDNSSA 96 (334)
T ss_pred ---HHH---HhCCCEEEECCch
Confidence 222 3467789998865
No 275
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.46 E-value=0.00045 Score=58.42 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=57.6
Q ss_pred CeEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 1 mkI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
.++.|||-| .+|..++..|.++|..|+++.... .++.+.+++||+||.+++++.-+.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~-------- 215 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIK-------- 215 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCC--------
Confidence 378999999 999999999999999999885421 245677899999999997754322
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 -~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 216 -ASMVKKGAVVVDIGIN 231 (285)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2346799999998755
No 276
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.45 E-value=0.00013 Score=51.61 Aligned_cols=71 Identities=28% Similarity=0.325 Sum_probs=51.5
Q ss_pred eEEEEecChhhHHHHHHH-HhCCCcE-EEEcCCcchhHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNL-LRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l-~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~ 74 (291)
|++|+|+|++|.+++..+ ...|+.+ .++|.++++...-. .|+.+..+.+++.+. .|+.++|+|.. ...++.
T Consensus 5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 689999999999998554 4567774 46788887654211 267777788888877 99999999764 455554
No 277
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.44 E-value=0.00055 Score=55.48 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=64.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+.+....-
T Consensus 23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~ 102 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTA 102 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCH
Confidence 79999999999999999999996 799999874333333222 2111111222222 245544444221110
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
+ - +...+.+-++||+++. .+.....+.+...+.+..++.+...
T Consensus 103 ~-~------~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~~~~ 145 (202)
T TIGR02356 103 E-N------LELLINNVDLVLDCTD-NFATRYLINDACVALGTPLISAAVV 145 (202)
T ss_pred H-H------HHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1 1 1122334467776653 4555556667777778888866543
No 278
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.44 E-value=0.00029 Score=61.30 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=46.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCc--chhHHHH----HC------CCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDELV----AH------GATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~~~l~----~~------g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++++... +. +..+..+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999997652 599999987 5433211 11 1233356667889999999
Q ss_pred EecC
Q 022834 62 GMLA 65 (291)
Q Consensus 62 i~vp 65 (291)
++-.
T Consensus 82 itAG 85 (323)
T cd00704 82 LVGA 85 (323)
T ss_pred EeCC
Confidence 9863
No 279
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.43 E-value=0.00048 Score=59.97 Aligned_cols=88 Identities=22% Similarity=0.158 Sum_probs=60.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-C-CcEEEEcCCcchhHHHHHCC-CcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++|.|+|+ |.||+.+++.|..+ | .++++++|+.+++..+..+. .....+.++.+.++|+|+.++..+. .+..
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~~~I- 231 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---GVEI- 231 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---CCcC-
Confidence 37999998 89999999999864 5 58999999988887776542 1122356677888999998883322 1110
Q ss_pred cCccccccCCCcEEEEcCC
Q 022834 77 KGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~ 95 (291)
. ...++++.+++|.+-
T Consensus 232 -~--~~~l~~~~~viDiAv 247 (340)
T PRK14982 232 -D--PETLKKPCLMIDGGY 247 (340)
T ss_pred -C--HHHhCCCeEEEEecC
Confidence 1 023357778888764
No 280
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00066 Score=57.26 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=57.5
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+..+++|+||.+++++.-+.
T Consensus 159 ~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~--------- 215 (281)
T PRK14183 159 DVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLIT--------- 215 (281)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccC---------
Confidence 78999998 89999999999999999988642 1356778899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ~~~vk~gavvIDvGin 231 (281)
T PRK14183 216 EDMVKEGAIVIDIGIN 231 (281)
T ss_pred HHHcCCCcEEEEeecc
Confidence 2346799999998755
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.42 E-value=0.00033 Score=64.30 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=64.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc--CC---------------HH------HH----H
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------PA------EV----I 54 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~---------------~~------~~----~ 54 (291)
|+.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|.... +. .+ +. .
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999988888776621 11 01 11 1
Q ss_pred hhCCEEEEecCCHHH--HHHHHhccCccccccCCCcEEEEcCC
Q 022834 55 KKCTITIGMLADPAA--ALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 55 ~~~dvvii~vp~~~~--~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
+.+|++|.|+..+.. -.-+. ++....++++..|+|++.
T Consensus 247 ~gaDVVIetag~pg~~aP~lit---~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLIT---AEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHH---HHHHHhcCCCCEEEEEcc
Confidence 458999999853221 01111 223345668888888875
No 282
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.41 E-value=0.00035 Score=61.25 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=54.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc---EEEE--cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~---V~~~--~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
|||+|+|+ |..|..+.+.|.+.+|. +... .|+..+.-........+.....+.+.++|++|+|+|... ..+..
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s~~~~ 86 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-SKKFG 86 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-HHHHH
Confidence 58999987 99999999999998874 3323 233222211111112222212234578999999998753 44444
Q ss_pred hccCccccccCCCcEEEEcCCC
Q 022834 75 FDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 75 ~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+++ ...|..|||+|..
T Consensus 87 ---~~~---~~~g~~VIDlS~~ 102 (344)
T PLN02383 87 ---PIA---VDKGAVVVDNSSA 102 (344)
T ss_pred ---HHH---HhCCCEEEECCch
Confidence 222 2467899999865
No 283
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.41 E-value=0.0022 Score=58.09 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=66.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHH---HHHHHHhc-c
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA---AALSVVFD-K 77 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~---~~~~v~~~-~ 77 (291)
+|.|||.|.+|.+++..|.+.|++|+++|++++.........-......+...+++|++|.+.+.+. .++..... .
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g~ 84 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASHI 84 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCCC
Confidence 7999999999999999999999999999987664432110000112233444567898888764322 22222210 0
Q ss_pred ---Cc--c-ccc--c-CCCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 78 ---GG--V-LEQ--I-CPGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 78 ---~~--l-~~~--l-~~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
.+ + ... . ....+-|.-|++...+..-+.+.+...+.
T Consensus 85 ~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~ 129 (418)
T PRK00683 85 PVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGI 129 (418)
T ss_pred cEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 00 0 000 1 11234566667777777777787876653
No 284
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.40 E-value=0.0011 Score=60.48 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=72.2
Q ss_pred eEEEEec----ChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGL----GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~----G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|+|||+ |.+|..+.++|.+.|| +|+.+++..+.. .|.+++.+.+++-...|++++++|. ..+.+++
T Consensus 9 siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l- 81 (447)
T TIGR02717 9 SVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV- 81 (447)
T ss_pred EEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCH-HHHHHHH-
Confidence 6999999 8899999999999998 576666653321 3888899999988889999999965 6677777
Q ss_pred ccCccccccCCCcEEEEcCCCCHH-------HHHHHHHHHHhcCCcEEE
Q 022834 76 DKGGVLEQICPGKGYIDMSTVDHE-------TSIKISRAITSKGGHFLE 117 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~~~~-------~~~~~~~~~~~~~~~~~~ 117 (291)
+++... .-..+++ +|.+.++ ..+++.+...+.|+.++.
T Consensus 82 --~e~~~~-gv~~~vi-~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 82 --EECGEK-GVKGAVV-ITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred --HHHHhc-CCCEEEE-ECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 555442 1223333 3544332 234555666666666553
No 285
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.39 E-value=0.0033 Score=57.72 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=69.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-----hHHHHHCCCcccC--CHHHHHhhCCEEEEec---CCHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-----CDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-----~~~l~~~g~~~~~--~~~~~~~~~dvvii~v---p~~~~~ 70 (291)
.||+|+|.|..|.+++..|.+.|++|+++|+++.. .+.+.+.|+.+.. ...+.+.++|+||.+- |+...+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~ 94 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL 94 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence 37999999999999999999999999999976531 2346666766532 2234457899888763 121222
Q ss_pred HHHHh-cc---Cc--c-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 71 LSVVF-DK---GG--V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 71 ~~v~~-~~---~~--l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
..... +. .+ + ....+...+-|.-|++...+.+-+...+...+...
T Consensus 95 ~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 95 VKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred HHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 22211 00 01 1 11111123445555667777777777777665543
No 286
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.0024 Score=58.99 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=70.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC--CHHHHHhhCCEEEEecCCH---HHHHHHHh-
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVIKKCTITIGMLADP---AAALSVVF- 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~~dvvii~vp~~---~~~~~v~~- 75 (291)
+|.|+|+|..|.+.++.|.+.|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+-.-+ ..+...-.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~~ 93 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAAA 93 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHHC
Confidence 79999999999999999999999999999877666666666765532 2334566889888875221 11221110
Q ss_pred cc---C--ccc-cc-----cC-C-CcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 76 DK---G--GVL-EQ-----IC-P-GKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 76 ~~---~--~l~-~~-----l~-~-~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
+. . ++. .. .. + ..+-|.-|++...+..-+.+.+...+..
T Consensus 94 gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~ 145 (488)
T PRK03369 94 GVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRR 145 (488)
T ss_pred CCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCc
Confidence 00 0 111 00 01 2 2344555666777777777777776543
No 287
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.36 E-value=0.00057 Score=59.83 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=62.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
+|.|||+|.+|+.++..|+..|+ +++++|++.-....+..+ |..-+....+.++ +.++-+.+.....
T Consensus 26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~ 105 (338)
T PRK12475 26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDV 105 (338)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999997 799999875222222111 1111111112121 3455555543211
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
. .+.+ +++ +..-++||+++. ...+...+.+...+.++.++.+..
T Consensus 106 ~-~~~~---~~~---~~~~DlVid~~D-~~~~r~~in~~~~~~~ip~i~~~~ 149 (338)
T PRK12475 106 T-VEEL---EEL---VKEVDLIIDATD-NFDTRLLINDLSQKYNIPWIYGGC 149 (338)
T ss_pred C-HHHH---HHH---hcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1 1111 112 334468888764 344445566666677887775543
No 288
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.36 E-value=0.00064 Score=60.26 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=59.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-----cEE--EE--cCCcchhHHHHH----------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-----KVT--VW--NRTLSKCDELVA----------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-----~V~--~~--~r~~~~~~~l~~----------~g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|...+. +|. ++ |++.++++...- .++.+..+..+.+++||+||
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV 125 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL 125 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence 8999999 9999999999998763 234 44 888877654321 12333445567788999999
Q ss_pred EecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 62 GMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 62 i~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
++-..+. -++++. +.+.++.+++.+++..||
T Consensus 126 itAG~prkpg~tR~dll~~N~~I~k~i~---~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 126 LIGAKPRGPGMERADLLDINGQIFADQG---KALNAVASKNCKVLVVGN 171 (387)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhCCCCeEEEEcCC
Confidence 9863321 133444 445554446666666664
No 289
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.35 E-value=0.002 Score=58.92 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=52.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC--CCccc----CCHHHH----HhhCCEEEEecCCH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATVG----GSPAEV----IKKCTITIGMLADP 67 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--g~~~~----~~~~~~----~~~~dvvii~vp~~ 67 (291)
++|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+. +..+. .+.+.+ ++++|.++++++++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 479999999999999999999999999999999998888764 33221 122221 34789999888654
No 290
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.34 E-value=0.00038 Score=56.99 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=45.8
Q ss_pred eEEEEecChhhHHHHHHHH--hCCCcEE-EEcCCcchhHHHHHCCC--cccCCHHHHHhh--CCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLL--RNGFKVT-VWNRTLSKCDELVAHGA--TVGGSPAEVIKK--CTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~--~~g~~V~-~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~--~dvvii~vp~~~~ 69 (291)
+|+|||+|.+|..++..+. ..|+++. ++|+++++..... .|. ...++..+++++ .|.+++|+|...+
T Consensus 86 rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 86 NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred EEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 7999999999999998643 4678766 5688766543221 122 223355666654 8999999987553
No 291
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.29 E-value=0.0012 Score=57.10 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=58.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccC-----CHHHHH-hhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----SPAEVI-KKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~-~~~dvvii~vp~~~~~~~v~~ 75 (291)
+|+|+|+|.+|..-.+.....|.+|+.++|++++.+...+.|....- +..+.+ +.+|+++.++| +..+...+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l- 246 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL- 246 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH-
Confidence 79999999998877777777899999999999999888877654211 111222 23888888887 55555544
Q ss_pred ccCccccccCCCcEEEEcCC
Q 022834 76 DKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~ 95 (291)
+.++++..++....
T Consensus 247 ------~~l~~~G~~v~vG~ 260 (339)
T COG1064 247 ------KALRRGGTLVLVGL 260 (339)
T ss_pred ------HHHhcCCEEEEECC
Confidence 33445554454333
No 292
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.27 E-value=0.00048 Score=59.52 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=59.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhH--HHHHC--CCccc----C-CHHHHHhhCCEEEEecCCHH-
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELVAH--GATVG----G-SPAEVIKKCTITIGMLADPA- 68 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~l~~~--g~~~~----~-~~~~~~~~~dvvii~vp~~~- 68 (291)
||+|||+ |.+|..++..|...++ ++.++|+++...+ .+.+. ...+. + +..+.++++|+||++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 7999999 9999999999998875 7999998762211 12211 11222 1 23577889999999874321
Q ss_pred --------------HHHHHHhccCccccccCCCcEEEEcCCCC
Q 022834 69 --------------AALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (291)
Q Consensus 69 --------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 97 (291)
-++++. +.+.+. .++.+++..||-.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~---~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLV---AAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCccHHHHHHHhHHHHHHHH---HHHHHh-CCCeEEEEecCch
Confidence 233344 444444 3677777776653
No 293
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.26 E-value=0.00066 Score=56.24 Aligned_cols=63 Identities=27% Similarity=0.349 Sum_probs=49.7
Q ss_pred EEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcc--hhHHHHHCCCccc-------CCHHHHHhhCCEEEEecC
Q 022834 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG-------GSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 3 I~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~~dvvii~vp 65 (291)
|.|+|+ |.+|..++..|.+.+|+|++..|++. ..+.+.+.|+.+. +++.++++++|.||+++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789986 99999999999999999999999864 3566777776532 233346678999999887
No 294
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.0016 Score=59.77 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=68.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec--CCH-----HHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML--ADP-----AAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v--p~~-----~~~~~v~ 74 (291)
||.|||.|..|.+.+..|.+.|++|+++|+.+.....+...|+.......+.+.++|+||..- |.. ..+....
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~ 90 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLAR 90 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHH
Confidence 699999999999999999999999999998755455565667765432223346789887532 211 1233222
Q ss_pred hc----cC--ccc-cccC----CCcE-EEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FD----KG--GVL-EQIC----PGKG-YIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~----~~--~l~-~~l~----~~~~-vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.. .. ++. ..++ +.++ -|.-|++...+.+-+...+...+...
T Consensus 91 ~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~ 143 (460)
T PRK01390 91 AAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDV 143 (460)
T ss_pred HcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCe
Confidence 10 01 111 1110 2233 45555667777777777777665433
No 295
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.25 E-value=0.0017 Score=56.62 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=58.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-------CcEEEEcCCcc--hhHH----HHH------CCCcccCCHHHHHhhCCEE
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-------FKVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-------~~V~~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~~dvv 60 (291)
+||+|+|+ |.+|..++..|...+ .+|.++|+++. +++. +.+ ..+....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 48999999 999999999998744 48999999653 2221 110 0122345556778899999
Q ss_pred EEecCCHH---------------HHHHHHhccCccccccCCCcEEEEcCC
Q 022834 61 IGMLADPA---------------AALSVVFDKGGVLEQICPGKGYIDMST 95 (291)
Q Consensus 61 ii~vp~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~ 95 (291)
|++...+. -++++. +.+.+...++.+++..||
T Consensus 83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~---~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 83 ILVGAMPRKEGMERKDLLKANVKIFKEQG---EALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEeCCcCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhCCCCeEEEEecC
Confidence 99863211 123333 445555445666666665
No 296
>PLN00106 malate dehydrogenase
Probab=97.25 E-value=0.00063 Score=59.06 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=45.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC--cEEEEcCCcchhH--HHHHC--CCcc-----cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELVAH--GATV-----GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~l~~~--g~~~-----~~~~~~~~~~~dvvii~vp 65 (291)
.||+|||+ |.+|..++..|+..+. ++.++|+++...+ .+.+. ...+ .++..+.++++|+||++..
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 38999999 9999999999997664 7999998762211 12211 1111 2334678899999999864
No 297
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.0042 Score=56.03 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=71.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchh----HHHHHCCCcccC--CHHHHHhhCCEEEEe--cC-CHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGATVGG--SPAEVIKKCTITIGM--LA-DPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~----~~l~~~g~~~~~--~~~~~~~~~dvvii~--vp-~~~~~~ 71 (291)
|||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...++.+.. ...+...++|+|+.. +| +...++
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~ 87 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE 87 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence 689999999999999999999999999999766551 222334544322 222456678988875 21 112222
Q ss_pred HHH-hccC-----cccccc--CCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 72 SVV-FDKG-----GVLEQI--CPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 72 ~v~-~~~~-----~l~~~l--~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
... ++.+ ++.... ...-+-|.-|++...+..-+...+...|....
T Consensus 88 ~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~ 140 (448)
T COG0771 88 AAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL 140 (448)
T ss_pred HHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce
Confidence 221 1110 111111 12234455667777788888888888776544
No 298
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.0074 Score=55.17 Aligned_cols=113 Identities=21% Similarity=0.156 Sum_probs=68.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch----hHHHHHCCCccc--CCHHHHHhh-CCEEEEec--C-CHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVG--GSPAEVIKK-CTITIGML--A-DPAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~----~~~l~~~g~~~~--~~~~~~~~~-~dvvii~v--p-~~~~~~ 71 (291)
+|.|+|.|.+|.+.+..|++.|++|+++|++... .+.+.+.|+.+. ....+.... +|+||... | +...++
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~ 86 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVE 86 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHH
Confidence 6899999999999999999999999999976532 244555576553 234444444 89887754 2 222222
Q ss_pred HHHhc------cCcccccc-CCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 72 SVVFD------KGGVLEQI-CPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 72 ~v~~~------~~~l~~~l-~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
..... ..++...+ ....+-|.-|++...+..-+...+...+..
T Consensus 87 ~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~ 136 (447)
T PRK02472 87 KALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQH 136 (447)
T ss_pred HHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCC
Confidence 22210 00111111 223345556666777777777777766543
No 299
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.23 E-value=0.0066 Score=55.95 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=68.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHH-HHCCCcccC--CHHHHHhhCCEEEEec--C-CHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVGG--SPAEVIKKCTITIGML--A-DPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~~dvvii~v--p-~~~~~~~v~ 74 (291)
+||.|+|+|..|.+++..|.+.|++|+++|+++.....+ .+.|+.+.. ...+.+.++|+||..- | +...+...-
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~ 95 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQ 95 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHH
Confidence 379999999999999999999999999999876655443 334766532 2234456789888762 2 222222221
Q ss_pred hc-c---C--ccc------ccc-CCCc-EEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 75 FD-K---G--GVL------EQI-CPGK-GYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 75 ~~-~---~--~l~------~~l-~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
.. . . ++. ... .+.+ +-|.-|++...+..-+...+...+..
T Consensus 96 ~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~ 149 (473)
T PRK00141 96 SQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFA 149 (473)
T ss_pred HCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCc
Confidence 10 0 0 010 001 1223 44555566777777777777766543
No 300
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.22 E-value=0.00083 Score=57.85 Aligned_cols=79 Identities=24% Similarity=0.197 Sum_probs=52.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
+||+|||+ |..|..+.+.|.++.+ ++.....+..+ .. .+.++...++|++|+|+|.... .+.. +
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s-~~~~---~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAA-REAV---A 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHH-HHHH---H
Confidence 48999985 9999999999998753 33333322211 11 2334555689999999987543 3343 2
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
++ ...|..|||+|..
T Consensus 69 ~~---~~~g~~VIDlSad 83 (313)
T PRK11863 69 LI---DNPATRVIDASTA 83 (313)
T ss_pred HH---HhCCCEEEECChh
Confidence 33 2467889999865
No 301
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.21 E-value=0.0014 Score=56.07 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=68.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc---chhHHHHHCC-------CcccCCH------HHHHhhCCEEEEec
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---SKCDELVAHG-------ATVGGSP------AEVIKKCTITIGML 64 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~---~~~~~l~~~g-------~~~~~~~------~~~~~~~dvvii~v 64 (291)
++.|+|+|..+.+++..|+..|. +|++++|++ ++++.+.+.- +.. .+. .+...++|+||-|+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNGT 204 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEECC
Confidence 68899999999999999998885 799999995 4777776531 112 122 22345789999999
Q ss_pred CCHHH--HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 65 ADPAA--ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 65 p~~~~--~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
|-... ..... ..-...++++.++.|+--....+ .+.+...++|+..++.
T Consensus 205 p~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~G 255 (288)
T PRK12749 205 KVGMKPLENESL---VNDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTIDG 255 (288)
T ss_pred CCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCccC--HHHHHHHHCCCeEECC
Confidence 75431 01101 00012355677888876443322 2344455667666543
No 302
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0011 Score=55.90 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=57.4
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ .+|..++..|...|..|+++.++. .++.+.+++||+||.+++++.-+.
T Consensus 154 ~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~--------- 210 (279)
T PRK14178 154 RAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFIT--------- 210 (279)
T ss_pred EEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccC---------
Confidence 68999998 999999999999999999887642 356788899999999998753221
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
...+++|.+|||.+..
T Consensus 211 ~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 211 PDMVKPGATVIDVGIN 226 (279)
T ss_pred HHHcCCCcEEEEeecc
Confidence 1235799999998765
No 303
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00036 Score=58.81 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=72.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCc---ccC---CHHHHHhhCCEEEEec--CCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT---VGG---SPAEVIKKCTITIGML--ADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~---~~~---~~~~~~~~~dvvii~v--p~~~~~~~ 72 (291)
||.|||.|-+|..-++...--|.+|++.|+|.+++..+.+. +.+ ..+ ..++.+..+|++|-+| |....-+-
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkL 249 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKL 249 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCcee
Confidence 78999999999999999888899999999999988877654 222 122 3456778899999886 33222222
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHH
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKI 104 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~ 104 (291)
+. +++.+.+++|.+|||...-...+++..
T Consensus 250 vt---~e~vk~MkpGsVivDVAiDqGGc~Et~ 278 (371)
T COG0686 250 VT---REMVKQMKPGSVIVDVAIDQGGCFETS 278 (371)
T ss_pred hh---HHHHHhcCCCcEEEEEEEcCCCceecc
Confidence 33 455667789999999876655554443
No 304
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.19 E-value=0.00069 Score=59.18 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=53.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcE---EEEcCCcchhHH-HHHCC--CcccC-CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKV---TVWNRTLSKCDE-LVAHG--ATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~-l~~~g--~~~~~-~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|+|+ |.+|..+.+.|.+++|.+ ... .+.+++.+ +.-.+ ..+.. +..+ ++++|++|+|+|.. ...+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~ 81 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRS 81 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHH
Confidence 58999997 999999999999877753 233 22222221 11112 22221 2233 47899999999864 3343
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.. +.+ ...|..+||+|..
T Consensus 82 ~v---~~~---~~~G~~VIDlS~~ 99 (336)
T PRK05671 82 FA---EKA---RAAGCSVIDLSGA 99 (336)
T ss_pred HH---HHH---HHCCCeEEECchh
Confidence 44 222 3467889999876
No 305
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.19 E-value=0.0015 Score=53.33 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=29.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
+|+|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 79999999999999999999996 499999873
No 306
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.18 E-value=0.0031 Score=57.69 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=66.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chh----HHHHHCCCccc--CCHHHHHhhCCEEEEecCCHH---HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKC----DELVAHGATVG--GSPAEVIKKCTITIGMLADPA---AA 70 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~~dvvii~vp~~~---~~ 70 (291)
+++.|+|.|.+|..++..|++.|++|+++|++. +.. +.+.+.|+.+. +..++....+|+||.+...+. .+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence 379999999999999999999999999999875 333 23334455432 233345567999999873221 11
Q ss_pred HHHHh-cc---Cc---cccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 71 LSVVF-DK---GG---VLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 71 ~~v~~-~~---~~---l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
...-. +. .. +........+-|.-|++...+.+-+...+...+
T Consensus 86 ~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 86 VQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred HHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11110 00 00 011122223345455666777776777776654
No 307
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.18 E-value=0.002 Score=54.61 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=56.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||- ..+|..++..|.+.|..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 157 ~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------- 213 (287)
T PRK14173 157 EVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLIT--------- 213 (287)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC---------
Confidence 6889987 567999999999999999988643 1357788899999999998864322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 214 ~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 PEMVRPGAVVVDVGIN 229 (287)
T ss_pred HHHcCCCCEEEEccCc
Confidence 2346799999998765
No 308
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0044 Score=51.39 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=69.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEE-EEcCCcchh-----HHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVT-VWNRTLSKC-----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~-~~~r~~~~~-----~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
|||+|+|+ |+||..+.+.+.+.. +++. .++|.+... ..+. ..|+.+.+++.....++|++|=.+ .|..
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~~ 81 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPEA 81 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cchh
Confidence 79999999 999999999998765 5544 457765422 1121 235667777777777899999877 5566
Q ss_pred HHHHHhccCccccccCCC-cEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 70 ALSVVFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~-~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
..+.+ +-.. ..+ .+||-++.-.+...+.+.+...+ +..+-+|
T Consensus 82 ~~~~l---~~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~ 124 (266)
T COG0289 82 TLENL---EFAL---EHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAP 124 (266)
T ss_pred hHHHH---HHHH---HcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEec
Confidence 66665 2222 233 35554444466666666665443 4344444
No 309
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.17 E-value=0.0013 Score=56.58 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred EEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecCCHH----
Q 022834 5 FLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADPA---- 68 (291)
Q Consensus 5 iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp~~~---- 68 (291)
|||+|.+|..++..|+..+. ++.++|++.++++....+ ...+..+..+.+++||+||++...+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999998775 699999988766543221 23344445577889999999874321
Q ss_pred -----------HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 -----------AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 -----------~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
-++++. +.+.+. .++.+++..||-
T Consensus 81 ~R~dll~~N~~i~~~~~---~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIV---PEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEeCCH
Confidence 134444 445544 366667766653
No 310
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.17 E-value=0.0018 Score=51.39 Aligned_cols=86 Identities=10% Similarity=0.144 Sum_probs=58.7
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCccc--CC----HHHHHhhCCEEEEecCCHHH-HHH
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG--GS----PAEVIKKCTITIGMLADPAA-ALS 72 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~~--~~----~~~~~~~~dvvii~vp~~~~-~~~ 72 (291)
++.|||-+ -+|..++..|.+.|..|++++.+.-....-. ......+ .+ ..+.+++||+||.+++++.- +.
T Consensus 64 ~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~- 142 (197)
T cd01079 64 TITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP- 142 (197)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC-
Confidence 68999885 5699999999999999999975432210000 0000111 12 56788999999999988653 22
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
...+++|++|||.+..
T Consensus 143 --------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 143 --------TELLKDGAICINFASI 158 (197)
T ss_pred --------HHHcCCCcEEEEcCCC
Confidence 2346799999998866
No 311
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.15 E-value=0.0014 Score=56.97 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=44.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCC-------cEEEEcCCcch--hHHH----HH------CCCcccCCHHHHHhhCCEEE
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDEL----VA------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~l----~~------~g~~~~~~~~~~~~~~dvvi 61 (291)
||+|||+ |.+|..++..|...+. ++.++|++++. ++.. .+ .+.....+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999997553 59999986542 2211 10 11222224457788999999
Q ss_pred EecC
Q 022834 62 GMLA 65 (291)
Q Consensus 62 i~vp 65 (291)
++-.
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 9863
No 312
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.15 E-value=0.0051 Score=52.44 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=74.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|+|. |.+|..+-.++...|++ .++..++.+ .+. -.|.+.+.+.+|+.+. .|+.++++|. ..+.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l--- 80 (286)
T TIGR01019 8 KVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAI--- 80 (286)
T ss_pred cEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHH---
Confidence 6899996 99999999999999998 666655552 111 1388899999998876 7999999966 5566666
Q ss_pred CccccccCCCcEEEEcCCCCHHH-HHHHHHHHHhcCCcEEE
Q 022834 78 GGVLEQICPGKGYIDMSTVDHET-SIKISRAITSKGGHFLE 117 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~~-~~~~~~~~~~~~~~~~~ 117 (291)
+++...- - +.++..|.+.++. .+++.+...+.++.++.
T Consensus 81 ~e~~~~G-v-k~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 81 FEAIDAG-I-ELIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred HHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 4444321 1 2333346665544 45666777777776664
No 313
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.15 E-value=0.0023 Score=54.11 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=56.9
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+.+++||+||.+++++.-+.
T Consensus 159 ~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~--------- 215 (284)
T PRK14170 159 RAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVK--------- 215 (284)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC---------
Confidence 78999885 56999999999999999988642 1357788899999999998865322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ~~~vk~GavVIDvGin 231 (284)
T PRK14170 216 KDYIKPGAIVIDVGMD 231 (284)
T ss_pred HHHcCCCCEEEEccCc
Confidence 2346789999998766
No 314
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.12 E-value=0.0023 Score=54.49 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=56.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||- .-+|..++..|.++|..|+++... +.++.+..++||+||.|++++.-+.
T Consensus 160 ~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------- 216 (297)
T PRK14186 160 KAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIG--------- 216 (297)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 6899987 457999999999999999988642 1367788899999999998865322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 217 ~~~ik~gavVIDvGin 232 (297)
T PRK14186 217 AEMVKPGAVVVDVGIH 232 (297)
T ss_pred HHHcCCCCEEEEeccc
Confidence 2346799999998765
No 315
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.12 E-value=0.0023 Score=54.13 Aligned_cols=94 Identities=24% Similarity=0.259 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCcccccccccccccCCCCCCcccccHHHH--
Q 022834 166 GAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD-- 239 (291)
Q Consensus 166 a~~~k~~~n~~~~~~~~~~~E~~~~~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 239 (291)
+..+|+++|.+..+++++++|+..+++. .|++.+++.++.. .+...|++++-....+...+. .|.++-....|
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~-~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDE-TGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-T-TSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccC-ccCcchhhhCCcc
Confidence 4679999999999999999999999995 6888887777765 455566666554433333331 11111111122
Q ss_pred -----HHHHHHHHhhcCCCchHHHHH
Q 022834 240 -----MRLALALGDENAVSMPIAAAA 260 (291)
Q Consensus 240 -----~~~~~~~a~~~g~~~p~~~~~ 260 (291)
-....+.|-+.|+|+|++.++
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a 105 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAA 105 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHH
Confidence 366788899999999997763
No 316
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.12 E-value=0.0039 Score=54.66 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=64.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCC----------cccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA----------TVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~----------~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+.. .-+....+.++ +.++-+.+.....
T Consensus 26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~ 105 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDV 105 (339)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999997 89999987544333332211 11111112222 3455444442211
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
..+.+ .+.+..-++||+++.. +.+...+.+...+.++.++.+..
T Consensus 106 ~~~~~-------~~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 106 TAEEL-------EELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred CHHHH-------HHHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEee
Confidence 11111 1123344788887554 45555666666677787776543
No 317
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.11 E-value=0.0026 Score=53.80 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=57.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+..++||+||.+++++.-+.
T Consensus 161 ~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~--------- 217 (284)
T PRK14177 161 NAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK--------- 217 (284)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC---------
Confidence 6889987 567999999999999999988743 2366788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 218 ~~~ik~gavVIDvGin 233 (284)
T PRK14177 218 ADWISEGAVLLDAGYN 233 (284)
T ss_pred HHHcCCCCEEEEecCc
Confidence 2346799999998875
No 318
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.11 E-value=0.0011 Score=57.94 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=55.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHh-CCCc---EEEEcC--CcchhHHHHHCCCcccC-CHHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLR-NGFK---VTVWNR--TLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~-~g~~---V~~~~r--~~~~~~~l~~~g~~~~~-~~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|||+ |.+|..+.+.|.+ ..++ +.++.. +..+.-.+......+.. +.++ ..++|++|+|+|.. ...+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~~ 83 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSRQ 83 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHHH
Confidence 58999998 9999999999995 6677 544432 21111112212222222 3333 47899999999774 3444
Q ss_pred HHhccCccccccCCCcEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+. .. ....|..|||+|..
T Consensus 84 ~~---~~---~~~~G~~VID~Ss~ 101 (347)
T PRK06728 84 FV---NQ---AVSSGAIVIDNTSE 101 (347)
T ss_pred HH---HH---HHHCCCEEEECchh
Confidence 44 22 23467899998865
No 319
>PRK08328 hypothetical protein; Provisional
Probab=97.10 E-value=0.0052 Score=50.89 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCccc----C-CHHHH----Hh--hCCEEEEecCCHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG----G-SPAEV----IK--KCTITIGMLADPAA 69 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~----~-~~~~~----~~--~~dvvii~vp~~~~ 69 (291)
||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+-.... . ...++ ++ ++|+.+.+.+....
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~ 108 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLS 108 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 79999999999999999999995 69999887655544443211100 0 11111 11 46777766532211
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
-+. +...+++-++|+++.-. +.+...+.+...+.++.++.+.+.|
T Consensus 109 ~~~-------~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 109 EEN-------IDEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred HHH-------HHHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 111 11223345788887655 4555556666677788888766443
No 320
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.10 E-value=0.00094 Score=48.13 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHhCCCcEEEEcCCcchhHHHH---HCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCC
Q 022834 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELV---AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICP 86 (291)
Q Consensus 10 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~ 86 (291)
+-+..++..|.+.|.+|.+||+.-....... ..+....+++.+.++++|+||++++.+ +...+-. +++...+.+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~--~~~~~~~~~ 93 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDW--EEIAKLMRK 93 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGH--HHHHHHSCS
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCH--HHHHHhcCC
Confidence 3467789999999999999998765544433 247788889999999999999999654 3333211 334444557
Q ss_pred CcEEEEcCCC
Q 022834 87 GKGYIDMSTV 96 (291)
Q Consensus 87 ~~~vv~~s~~ 96 (291)
+.+|+|+-+.
T Consensus 94 ~~~iiD~~~~ 103 (106)
T PF03720_consen 94 PPVIIDGRNI 103 (106)
T ss_dssp SEEEEESSST
T ss_pred CCEEEECccc
Confidence 8899997654
No 321
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.09 E-value=0.0026 Score=53.83 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=56.4
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~--------- 214 (282)
T PRK14169 158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIG--------- 214 (282)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 68899874 57999999999999999988542 1357788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 215 ~~~vk~GavVIDvGin 230 (282)
T PRK14169 215 ADAVKPGAVVIDVGIS 230 (282)
T ss_pred HHHcCCCcEEEEeecc
Confidence 2346799999998764
No 322
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.08 E-value=0.002 Score=48.58 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=63.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~ 69 (291)
.||.|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+....+.++ ++++=+.+.+....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 489999999999999999999997 699998764333222221 2211112222222 23444555544331
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
-+ .. .++. ..-++|++++.. ......+.+...+.+..++.+...
T Consensus 83 ~~-~~---~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 83 EE-NI---EELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp HH-HH---HHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cc-cc---cccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEee
Confidence 11 11 1222 233577765544 555566777777778888876644
No 323
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0027 Score=53.65 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=56.6
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+++|||-+ -+|..++..|.+.|..|+++.... .++.+..++||++|.+++++.-+..
T Consensus 159 ~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~-------- 216 (282)
T PRK14166 159 DAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRS-------- 216 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCH--------
Confidence 68899874 579999999999999999887531 3577888999999999988653322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++|.+|||.+..
T Consensus 217 -~~vk~GavVIDvGin 231 (282)
T PRK14166 217 -DMVKEGVIVVDVGIN 231 (282)
T ss_pred -HHcCCCCEEEEeccc
Confidence 246799999998755
No 324
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0027 Score=53.57 Aligned_cols=72 Identities=29% Similarity=0.322 Sum_probs=56.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+..++||+||.+++++.-+.
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~--------- 216 (278)
T PRK14172 160 EVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFID--------- 216 (278)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC---------
Confidence 6899987 567999999999999999998743 2367788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 217 ~~~ik~gavVIDvGin 232 (278)
T PRK14172 217 EEYVKEGAIVIDVGTS 232 (278)
T ss_pred HHHcCCCcEEEEeecc
Confidence 2346799999998654
No 325
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0026 Score=53.77 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=56.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|||- .-+|..++..|.++|..|+++.... .++.+..++||+||.+++++.-+..
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~~-------- 217 (282)
T PRK14180 160 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFITA-------- 217 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCCH--------
Confidence 6889987 4579999999999999999886531 3666778999999999988653322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..+++|.+|||.+..
T Consensus 218 -~~vk~gavVIDvGin 232 (282)
T PRK14180 218 -DMVKEGAVVIDVGIN 232 (282)
T ss_pred -HHcCCCcEEEEeccc
Confidence 346799999998754
No 326
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0059 Score=52.42 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=33.5
Q ss_pred eEEEEecChhhHHHHHHHHh-CCCcEE-EEcCCcchhHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~ 41 (291)
|||+||+|.||+.++...++ .|.+|. +.||+.+.+++..+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~ 60 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD 60 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence 79999999999999999886 688866 55898888776554
No 327
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.05 E-value=0.0019 Score=46.28 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=46.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc-CCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
+|.|||.|.+|..=+..|.+.|.+|+++++.. ...+..++.. ...++.++++++|+.|++++..-+.+.
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~----~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~ 78 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEI----EFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIY 78 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE----HHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCch----hhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHH
Confidence 68999999999999999999999999999875 1112232221 122344677899998886644333333
No 328
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.04 E-value=0.0018 Score=57.03 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCC-CcEEEE-cCCcchhHHHHHC-------CC-------cccCCHHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAH-------GA-------TVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~~-------g~-------~~~~~~~~~~~~~dvvii~ 63 (291)
|||+|+|+ |.||..+.+.|.++. +++... ++.++.-+.+.+. +. .+.+...+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 79999996 999999999998866 576655 4433222222110 01 1111122344789999999
Q ss_pred cCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 64 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+|...+. ++. +.+ ...|..+||+|..
T Consensus 81 ~p~~~s~-~~~---~~~---~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAE-EVE---PKL---AEAGKPVFSNASN 106 (341)
T ss_pred CCHHHHH-HHH---HHH---HHCCCEEEECChh
Confidence 9876433 333 222 2357778888765
No 329
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.04 E-value=0.0025 Score=54.65 Aligned_cols=77 Identities=25% Similarity=0.219 Sum_probs=51.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC-CcEEEE-cCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
||+|+|+ |..|..|.+.|..+. .++... .+. +. . ..+.+++++++|++|+|+|... ..+.. +
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~--~~--------~-~~~~~~~~~~~D~vFlalp~~~-s~~~~---~ 67 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR--RK--------D-AAERAKLLNAADVAILCLPDDA-AREAV---S 67 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc--cc--------C-cCCHhHhhcCCCEEEECCCHHH-HHHHH---H
Confidence 8999987 999999999999874 243322 221 11 1 1245566678999999998754 33443 2
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
.+ ...+..|||+|..
T Consensus 68 ~~---~~~g~~VIDlSad 82 (310)
T TIGR01851 68 LV---DNPNTCIIDASTA 82 (310)
T ss_pred HH---HhCCCEEEECChH
Confidence 22 2467889999865
No 330
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=97.02 E-value=0.014 Score=53.41 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=70.0
Q ss_pred eEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~~v~~ 75 (291)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.+.. ...+.+.++|+||+.- | +...+.....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 5889999999998 99999999999999997543 33446666776643 2234456789888753 2 2222332221
Q ss_pred c------cCccc-cccCC-CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 76 D------KGGVL-EQICP-GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 76 ~------~~~l~-~~l~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
. ..++. ...++ ..+-|.-|++...+..-+...+...|.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 0 00121 12222 234455666777777777788877764
No 331
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.02 E-value=0.0032 Score=53.65 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=56.9
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+.++++|+||.+++++.-+.
T Consensus 169 ~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~--------- 225 (299)
T PLN02516 169 KAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIK--------- 225 (299)
T ss_pred EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC---------
Confidence 78999885 56999999999999999998643 2367788899999999998853222
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 226 ~~~vk~gavVIDvGin 241 (299)
T PLN02516 226 GDWIKPGAAVIDVGTN 241 (299)
T ss_pred HHHcCCCCEEEEeecc
Confidence 2347799999998765
No 332
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0033 Score=53.43 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=56.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+..++||+||.+++++.-+.
T Consensus 162 ~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~--------- 218 (294)
T PRK14187 162 DAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVK--------- 218 (294)
T ss_pred EEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 6889987 456999999999999999988753 1356788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||....
T Consensus 219 ~~~ik~gaiVIDVGin 234 (294)
T PRK14187 219 YSWIKKGAIVIDVGIN 234 (294)
T ss_pred HHHcCCCCEEEEeccc
Confidence 2346789999998754
No 333
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0034 Score=53.22 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=56.3
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.+.|..|+++... +.++.+..++||+||.+++++.-+..
T Consensus 161 ~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~-------- 218 (288)
T PRK14171 161 NVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTA-------- 218 (288)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCH--------
Confidence 68899874 57999999999999999988642 13677888999999999988653322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
.++++|.+|||.+..
T Consensus 219 -~~vk~GavVIDvGin 233 (288)
T PRK14171 219 -EYFNPESIVIDVGIN 233 (288)
T ss_pred -HHcCCCCEEEEeecc
Confidence 346799999998754
No 334
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.99 E-value=0.0037 Score=52.91 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=56.3
Q ss_pred eEEEEec-ChhhHHHHHHHHh--CCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccC
Q 022834 2 EVGFLGL-GIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~ 78 (291)
++.|||- ..+|..++..|.+ ++..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 160 ~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~------- 218 (284)
T PRK14193 160 HVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVT------- 218 (284)
T ss_pred EEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccC-------
Confidence 6889987 5679999999988 67889888653 2467788899999999998864322
Q ss_pred ccccccCCCcEEEEcCCC
Q 022834 79 GVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 79 ~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 219 --~~~ik~GavVIDvGin 234 (284)
T PRK14193 219 --ADMVKPGAAVLDVGVS 234 (284)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 2347799999998765
No 335
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0029 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred EEEEecChhhHHHHHHHHhCC---CcEEEEcCCcchhHHHHHC----------CCcccCCHHHHHhhCCEEEEecCCHHH
Q 022834 3 VGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvvii~vp~~~~ 69 (291)
..|+|.|..+..+.....+.- .+|.+|+|+++.++.+++. .....++.++++..+|+|+.|++.
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls--- 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS--- 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---
Confidence 568999999998887766532 4799999999998887762 134467788889999999999954
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+.++| ..++++|+.|=......|..- +....+.+.+..|+|..
T Consensus 218 tePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 218 TEPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQSACVFVDSR 261 (333)
T ss_pred CCceee-----eeeecCCceEeeeccCCchHH-HHhHHHhhhheEEEecc
Confidence 566664 346778887665666666554 44455556677888764
No 336
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.98 E-value=0.002 Score=55.90 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=40.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEe
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~ 63 (291)
||.|||+|.||...++.|.++|. +|++.+|+.+.. .+.+.. ...-+...++|+||.|
T Consensus 176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEc
Confidence 78999999999999999999995 699999987531 111100 0111234578999987
No 337
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.98 E-value=0.015 Score=47.21 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=49.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCCC-cccC---CHHHHHhhCCEEEEecCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHGA-TVGG---SPAEVIKKCTITIGMLADPA 68 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g~-~~~~---~~~~~~~~~dvvii~vp~~~ 68 (291)
+++.|||.|.+|..=+..|.+.|.+|+++.... +....+.+.+- .... +.++ ..++++||.|++++.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 379999999999999999999999999997655 55555655532 2222 2333 345999999996644
No 338
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.98 E-value=0.011 Score=54.43 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=70.5
Q ss_pred CeEEEEecChhhHH-HHHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHHHHH
Q 022834 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVV 74 (291)
Q Consensus 1 mkI~iIG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~~v~ 74 (291)
++|.|||.|..|.+ +++.|.+.|++|+++|.++. ..+.+.+.|+.+.. ...+.+.++|+||+.- | +...+....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 47999999999999 89999999999999997543 33446666776532 2234456789888763 2 212232221
Q ss_pred h------ccCcccccc-CC-CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 75 F------DKGGVLEQI-CP-GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 75 ~------~~~~l~~~l-~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
. +..++...+ .+ ..+-|.-|++...+..-+.+.+...|.
T Consensus 88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 001122122 22 234565666777777777788877663
No 339
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.97 E-value=0.00086 Score=52.33 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=47.1
Q ss_pred eEEEEecChhhHHHHHH-HH-hCCCcEE-EEcCCcchhHHHHHCCCcc--cCCHHHHHh--hCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMN-LL-RNGFKVT-VWNRTLSKCDELVAHGATV--GGSPAEVIK--KCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~-l~-~~g~~V~-~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~~dvvii~vp~~~~~~~v~ 74 (291)
++.|||+|++|.+++.. +. +.|++++ ++|.+++..-.-.. ++.+ .++++..++ +.|+.++|||. .+..++.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~-~v~V~~~d~le~~v~~~dv~iaiLtVPa-~~AQ~va 163 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG-DVPVYDLDDLEKFVKKNDVEIAILTVPA-EHAQEVA 163 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC-CeeeechHHHHHHHHhcCccEEEEEccH-HHHHHHH
Confidence 68999999999999987 33 4667654 77998876543222 2333 334555555 67889999976 4444444
No 340
>PRK08223 hypothetical protein; Validated
Probab=96.96 E-value=0.0063 Score=51.67 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=66.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|.|||+|.+|+.++..|+.+|. +++++|.+.=....+..+ |..-+....+.++ +.++=|.+.+....
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~- 107 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG- 107 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC-
Confidence 79999999999999999999995 688998764333333322 2221222222222 34444444432111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+ +.....+..-++|||.+... ..+...+.+.....++.++.+.+.|
T Consensus 108 ~------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 108 K------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred c------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 1 11112233447888877553 3455566666777788888765443
No 341
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.96 E-value=0.0061 Score=50.29 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=60.9
Q ss_pred EEEEcCCcchhHHHHHC-CCcccCCHHHHH-hhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCC---CHHH
Q 022834 26 VTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV---DHET 100 (291)
Q Consensus 26 V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~---~~~~ 100 (291)
+.++|+++++++.+.+. |...+++.++++ .+.|+|++|+|...+.+-.. ..+..|+.++-.+.+ ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence 45789999999888764 678888999986 57999999998877655444 334455555545654 4466
Q ss_pred HHHHHHHHHhcCCcEEE
Q 022834 101 SIKISRAITSKGGHFLE 117 (291)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ 117 (291)
.+++.+...+.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 77787777777776553
No 342
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.96 E-value=0.0036 Score=53.06 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=56.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.++|..|++++.. +.++.+.+++||+||.+++++.-+.
T Consensus 160 ~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~--------- 216 (284)
T PRK14190 160 HVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLIT--------- 216 (284)
T ss_pred EEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCC---------
Confidence 6889987 567999999999999999988642 1367788899999999997755222
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 217 ~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 ADMVKEGAVVIDVGVN 232 (284)
T ss_pred HHHcCCCCEEEEeecc
Confidence 2346799999998755
No 343
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.95 E-value=0.0013 Score=57.70 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcE---EEEcCCcchhHHHHHCCC--cccCCHHHHHhhCCEEEEecCCHHHHHHHHh
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~ 75 (291)
||+||| .|.+|..+.+.|.+++|++ .++.+....-+.+.-.|. .+.+...+.+.++|++|+|+|... ..+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHHHH-
Confidence 689999 5999999999999988863 344443332222222221 222111234478999999997743 44444
Q ss_pred ccCccccccCCCcEEEEcCCC
Q 022834 76 DKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 76 ~~~~l~~~l~~~~~vv~~s~~ 96 (291)
+.+ +..|..|||+|..
T Consensus 79 --~~~---~~~G~~VID~ss~ 94 (339)
T TIGR01296 79 --PKA---AKCGAIVIDNTSA 94 (339)
T ss_pred --HHH---HHCCCEEEECCHH
Confidence 222 3456789998864
No 344
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.95 E-value=0.0096 Score=50.91 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=71.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcch-hHHHHHCCCcccCCHHHHHhh--CCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--~dvvii~vp~~~~~~~v~~~~ 77 (291)
||.|.|. |.+|..+..+|.+.|++ .+|-.+|.. .+. -.|.+.+.+.+|+.+. .|+.++++|. ..+.+++
T Consensus 10 ~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l--- 82 (291)
T PRK05678 10 KVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI--- 82 (291)
T ss_pred eEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH---
Confidence 6889998 88999999999998887 554333331 111 1388899999999886 8999999966 5566666
Q ss_pred CccccccCCCcEEEEcCCCCHH-HHHHHHHHHHhcCCcEEEc
Q 022834 78 GGVLEQICPGKGYIDMSTVDHE-TSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 78 ~~l~~~l~~~~~vv~~s~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (291)
+++...- - +.++..|.+.+. ..+++.+...+.|+.++..
T Consensus 83 ~e~~~~g-v-k~avI~s~Gf~~~~~~~l~~~a~~~girvlGP 122 (291)
T PRK05678 83 LEAIDAG-I-DLIVCITEGIPVLDMLEVKAYLERKKTRLIGP 122 (291)
T ss_pred HHHHHCC-C-CEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence 4554321 1 233333555442 2346777777777777643
No 345
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.94 E-value=0.0034 Score=52.66 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=57.4
Q ss_pred eEEEEecCh-hhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+. +|..|+..|.++++.|+++.... .+..+..+++|+++.++..+.-++
T Consensus 158 ~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~--------- 214 (283)
T COG0190 158 NVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIK--------- 214 (283)
T ss_pred EEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccc---------
Confidence 688999876 59999999999999999997541 367788899999999997754322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
.+++++|.+++|....
T Consensus 215 ~d~vk~gavVIDVGin 230 (283)
T COG0190 215 ADMVKPGAVVIDVGIN 230 (283)
T ss_pred cccccCCCEEEecCCc
Confidence 3457789999998765
No 346
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0028 Score=54.70 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=67.8
Q ss_pred CeEEEEecChhhHHHHHHHHhC--------CCcEE---EEcCCcchhHHHHHCC-CcccCCH-----HHHH--hhCCEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCDELVAHG-ATVGGSP-----AEVI--KKCTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--------g~~V~---~~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~~dvvi 61 (291)
|||+|+|+|.+|+.+++.|.++ |.++. +.+|+......+.-.+ ..+..+. .+.+ .+.|+++
T Consensus 4 v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvv 83 (333)
T COG0460 4 VKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVVV 83 (333)
T ss_pred EEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEEE
Confidence 4899999999999999999875 33433 3355443332111011 1222232 3433 3567888
Q ss_pred EecCC-HHHHHHHHhccCccccccCCCcEEEEcCCC-CHHHHHHHHHHHHhcCCcEE-EcccCCCh
Q 022834 62 GMLAD-PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVSGSK 124 (291)
Q Consensus 62 i~vp~-~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (291)
-+++. ...-++ + +.+...+..|+.||..... ......++.+...+.++.+. .+.+.|+.
T Consensus 84 e~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGi 145 (333)
T COG0460 84 ELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGI 145 (333)
T ss_pred ecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCc
Confidence 88865 233332 3 3455677788888832222 11223456666666676655 66665553
No 347
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.94 E-value=0.002 Score=55.94 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=44.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCC--CcEEEEcCCcchhH--HHHHC--CCcc--cCC---HHHHHhhCCEEEEecCC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCD--ELVAH--GATV--GGS---PAEVIKKCTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~--~l~~~--g~~~--~~~---~~~~~~~~dvvii~vp~ 66 (291)
||+|||+ |.+|..++..|+..+ .++.++|++....+ .+.+. ...+ ..+ ..+.++++|+||++...
T Consensus 10 KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 10 KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 8999999 999999999999655 57999998432221 12211 1122 112 25778899999998743
No 348
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0043 Score=52.41 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=56.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.+++..|+++... +.++.+..++||++|.+++++.-+.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~--------- 215 (282)
T PRK14182 159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVK--------- 215 (282)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC---------
Confidence 6889987 456999999999998999988643 2356778899999999998754322
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ~~~ik~gaiVIDvGin 231 (282)
T PRK14182 216 GAWVKEGAVVIDVGMN 231 (282)
T ss_pred HHHcCCCCEEEEeece
Confidence 2346799999998755
No 349
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.93 E-value=0.0022 Score=54.38 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=67.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC-CCcccCCHHHHHhhCCEEEEecCCHHHH-HHHHhccC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKG 78 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvvii~vp~~~~~-~~v~~~~~ 78 (291)
++.|+|+|..+.+++..|.+.|. +|++++|++++++.+.+. +.....+. ....+|+||-|+|-...- .+.- ..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~ 199 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KL 199 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cC
Confidence 58899999999999999999886 599999999999888764 22111111 124589999999743210 0000 00
Q ss_pred cc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 79 GV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 79 ~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+ ...++++.+++|+.-....+ .+.+...+.|+..++
T Consensus 200 pi~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 200 AFPEAEIDAASVVFDVVALPAET--PLIRYARARGKTVIT 237 (272)
T ss_pred CCCHHHcCCCCEEEEeecCCccC--HHHHHHHHCcCeEeC
Confidence 11 12355677888876543322 233344555665553
No 350
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.93 E-value=0.006 Score=49.28 Aligned_cols=115 Identities=18% Similarity=0.294 Sum_probs=64.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC----------CCcccCCHHHHHh--hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~--~~dvvii~vp~~~ 68 (291)
||.|||+|.+|+.++.+|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+.....
T Consensus 21 ~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~ 100 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDS 100 (198)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 79999999999999999999995 599998764322222211 2111111112121 3566555552211
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.+.. +.....+++-++|+++. ........+.+...+.++.++.+...|
T Consensus 101 --~~~~---~~~~~~~~~~dvVi~~~-d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 101 --LSND---SNIEEYLQKFTLVIATE-ENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred --ccch---hhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 0000 11111233345777664 346666677777778888887665433
No 351
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.91 E-value=0.0073 Score=50.29 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |..-+....+.++ +.++-+.+.+....-
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~ 105 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDD 105 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCH
Confidence 79999999999999999999995 688998865443333322 2111111222222 356666665322111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+. +...+..-++||+++.. +.....+.+...+.++.++.+...|
T Consensus 106 ~~-------~~~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 106 AE-------LAALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred HH-------HHHHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11223345688876544 5566667777777888888765443
No 352
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.88 E-value=0.017 Score=52.67 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=69.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-hH---H-HH-HCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CD---E-LV-AHGATVGG-SPAEVIKKCTITIGML--A-DPAAAL 71 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~---~-l~-~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~ 71 (291)
||.|||.|..|.++++.|.+.|++|+++|..+.. .. . +. ..|+.+.. ...+.+.++|+||..- | +...+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 6899999999999999999999999999975432 21 1 22 24665432 1234456789887764 2 212222
Q ss_pred HHHh-c-----cCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 72 SVVF-D-----KGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 72 ~v~~-~-----~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.... + ..++. ...+...+-|.-|++...+..-+...+...+..+.
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~ 132 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAF 132 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeE
Confidence 2210 0 00111 12222344555666777777777788877766544
No 353
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.88 E-value=0.0028 Score=55.04 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=48.6
Q ss_pred EEEEecChhhHHHHHHHHhC-CCcEE-EEcCCcchhHHHHH-------------------CCCcccCCHHHHHhhCCEEE
Q 022834 3 VGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 3 I~iIG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dvvi 61 (291)
|||+|+|.+|..+++.+.+. +.+|. +.|.+++....+.. .++.+..+++++..++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998753 45655 45766664444433 12344557888888999999
Q ss_pred EecCCHHH
Q 022834 62 GMLADPAA 69 (291)
Q Consensus 62 i~vp~~~~ 69 (291)
.|+|...+
T Consensus 81 e~Tp~~~~ 88 (333)
T TIGR01546 81 DATPGGIG 88 (333)
T ss_pred ECCCCCCC
Confidence 99987543
No 354
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.86 E-value=0.0018 Score=56.50 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=54.3
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCC---cEEEEcCCcchhHH--HHHCCCcccCCHHHH-HhhCCEEEEecCCHHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDE--LVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSV 73 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~~dvvii~vp~~~~~~~v 73 (291)
|||+|||+ |.+|..|.+.|.++.| ++..+......-+. +......+. +.++. ..++|++|+|+|.. ...++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~~~ 82 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASAAY 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHHHH
Confidence 58999998 9999999999998655 45555322111111 111122222 33333 26799999999775 33444
Q ss_pred HhccCccccccCCCcEEEEcCCC
Q 022834 74 VFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 74 ~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
. +.+ ...|..|||+|..
T Consensus 83 ~---~~~---~~~g~~VIDlS~~ 99 (336)
T PRK08040 83 A---EEA---TNAGCLVIDSSGL 99 (336)
T ss_pred H---HHH---HHCCCEEEECChH
Confidence 4 222 3468899999865
No 355
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.83 E-value=0.0097 Score=49.23 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=63.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-+.+.+.....
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~ 102 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDA 102 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCH
Confidence 79999999999999999999996 688998765333333222 2111111122221 234444444321111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+. + ...+..-++||++. ..+.....+.+...+.++.++.+.+.|
T Consensus 103 ~~-~------~~~~~~~DvVi~~~-d~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 103 EN-A------EELIAGYDLVLDCT-DNFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred HH-H------HHHHhCCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1 11222345666654 355555666777777788888765443
No 356
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0061 Score=51.66 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=55.8
Q ss_pred eEEEEecC-hhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||-+ -+|..++..|.++ +..|+++... +.++.+.+++||+||.+++++.-+.
T Consensus 155 ~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~----- 215 (287)
T PRK14181 155 HVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIK----- 215 (287)
T ss_pred EEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC-----
Confidence 68899875 5799999999988 6788887642 1367788899999999998864322
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 216 ----~~~ik~GavVIDvGin 231 (287)
T PRK14181 216 ----EEMIAEKAVIVDVGTS 231 (287)
T ss_pred ----HHHcCCCCEEEEeccc
Confidence 2347799999998755
No 357
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.82 E-value=0.0055 Score=53.34 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=56.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||- .-+|..++..|.+++..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 233 ~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~--------- 289 (364)
T PLN02616 233 RAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVR--------- 289 (364)
T ss_pred EEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCC---------
Confidence 6888987 557999999999999999988643 2467788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||....
T Consensus 290 ~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 290 GSWIKPGAVVIDVGIN 305 (364)
T ss_pred HHHcCCCCEEEecccc
Confidence 2346799999998755
No 358
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.80 E-value=0.0057 Score=52.98 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=56.1
Q ss_pred eEEEEecC-hhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
++.|||-+ -+|..++..|.++|..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 216 ~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~--------- 272 (345)
T PLN02897 216 NAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVR--------- 272 (345)
T ss_pred EEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccC---------
Confidence 68899874 56999999999999999988642 1356788899999999998865332
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 273 ~d~vk~GavVIDVGin 288 (345)
T PLN02897 273 GSWLKPGAVVIDVGTT 288 (345)
T ss_pred HHHcCCCCEEEEcccc
Confidence 2346799999998765
No 359
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.79 E-value=0.02 Score=52.45 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=71.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc--hhHHHHH--CCCcccC--CHHHHHhhCCEEEEec--C-CHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVA--HGATVGG--SPAEVIKKCTITIGML--A-DPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~~dvvii~v--p-~~~~~~~ 72 (291)
.|.|+|.|..|.++++.|.+.|++|+++|..+. ..+.+.+ .|+.+.. ...+.+.++|+||+.- | +...+..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~ 87 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA 87 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence 488999999999999999999999999997543 2234554 2665532 2234456789887653 2 1122222
Q ss_pred HHh-cc---C--cccc-ccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCC
Q 022834 73 VVF-DK---G--GVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (291)
Q Consensus 73 v~~-~~---~--~l~~-~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
... +. . ++.. ..+...+-|.-|++...+..-+...+...|..+......|.
T Consensus 88 a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~ 145 (448)
T PRK03803 88 AAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGT 145 (448)
T ss_pred HHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCH
Confidence 210 00 0 1211 12222344555666777777778888777665543333333
No 360
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.79 E-value=0.0076 Score=53.26 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=59.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH-CCCcccCCH-H--------HHH--hhCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVGGSP-A--------EVI--KKCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-~g~~~~~~~-~--------~~~--~~~dvvii~vp~~~ 68 (291)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .+.....+. + +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 58899999999999887777884 67788999999988877 454432222 1 111 23899999998665
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
.+.+.+ ..++++..++..+..
T Consensus 251 ~~~~ai-------~~~r~gG~v~~vGv~ 271 (350)
T COG1063 251 ALDQAL-------EALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHhcCCCEEEEEecc
Confidence 555554 344555555555544
No 361
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.78 E-value=0.0033 Score=53.74 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=44.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc----cCCHHHHH------hh-CCEEEEecCC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEVI------KK-CTITIGMLAD 66 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~~~~------~~-~dvvii~vp~ 66 (291)
+|.|+|+ |.+|..++..|.+.|++|++..|++++........+.. .++..+++ +. +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 5889987 99999999999999999999999987543210011111 12333444 34 8999988764
No 362
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.77 E-value=0.014 Score=48.80 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||+|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+.+....
T Consensus 34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~- 112 (245)
T PRK05690 34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD- 112 (245)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC-
Confidence 79999999999999999999995 799998765443334322 2222222222222 34555555532111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEccc
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
++ .+...++.-++||+++. .+.....+.+...+.+..++.+.+
T Consensus 113 ~~------~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 113 DD------ELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred HH------HHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeee
Confidence 10 11112334467787654 455555566667777888886554
No 363
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.75 E-value=0.019 Score=53.03 Aligned_cols=112 Identities=20% Similarity=0.124 Sum_probs=67.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-h----hHHHHHCCCcccCC-HHHHHhhCCEEEEec---CCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-K----CDELVAHGATVGGS-PAEVIKKCTITIGML---ADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~----~~~l~~~g~~~~~~-~~~~~~~~dvvii~v---p~~~~~~~ 72 (291)
+|.|||.|..|..+|..|.+.|++|+++|+++. . .+.+.+.|+.+... ..+....+|+||++. |....+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHH
Confidence 799999999999999999999999999986543 1 23455567665421 111334689999886 22222211
Q ss_pred HHh-c-----cCccc-cccCC----CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 73 VVF-D-----KGGVL-EQICP----GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 73 v~~-~-----~~~l~-~~l~~----~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
... + ..++. ....+ ..+-|.-|++...+..-+...+...+.
T Consensus 98 a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~ 149 (480)
T PRK01438 98 AADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGL 149 (480)
T ss_pred HHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCC
Confidence 110 0 00111 11211 134455566677777777777776544
No 364
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=96.73 E-value=0.016 Score=43.39 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=69.2
Q ss_pred EEecCCHHHHHHHHHHHHHhccceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHHhhcC
Q 022834 134 ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT----LLDVLDLGG 209 (291)
Q Consensus 134 ~~~~g~~~~~~~~~~ll~~~g~~~~~~~~~~~a~~~k~~~n~~~~~~~~~~~E~~~~~~~~g~~~~~----~~~~~~~~~ 209 (291)
+.+.|+++..+.++++++.+|.+++.+.+ ..-..+....-+..+....++..+.+++++.|++.++ +..++..+.
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~ 82 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETL 82 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Confidence 34445999999999999999999988865 3444444444455555678888899999999999954 445444321
Q ss_pred CCcccccccccccccCCCCCCcccccHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022834 210 IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK 266 (291)
Q Consensus 210 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~~~g~~~p~~~~~~~~~~~ 266 (291)
..+.........+......|...+.+-.+...-.-|-...+++.+.+
T Consensus 83 ----------~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~ 129 (132)
T PF10728_consen 83 ----------ENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSR 129 (132)
T ss_dssp ----------HHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred ----------HHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111111222334456665555444443322555555555544
No 365
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.72 E-value=0.019 Score=46.37 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=65.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~ 69 (291)
.||.|+|+|.+|+.++.+|+..|. +++++|.+.=....+..+ |...+....+.++ ++++-+.+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~-- 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD-- 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC--
Confidence 379999999999999999999996 599998764322222211 2211111122121 456666554221
Q ss_pred HHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 70 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+.+.. ++ .+..-++|++++ ........+.+...+.++.++.+...|
T Consensus 100 ~~~~~---~~---~~~~~dvVi~~~-~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 ISEKP---EE---FFSQFDVVVATE-LSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred ccccH---HH---HHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 11111 11 122335777654 346666777777778888887666544
No 366
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.70 E-value=0.0032 Score=42.71 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
||.|||.|..|.-+|..|++.|.+|+++.+++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999999999999999999999999987654
No 367
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.039 Score=50.44 Aligned_cols=114 Identities=13% Similarity=0.040 Sum_probs=68.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch--hHHHHH--CCCcccC--CHHHHHhhCCEEEEecC---CHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVA--HGATVGG--SPAEVIKKCTITIGMLA---DPAAAL 71 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~--~g~~~~~--~~~~~~~~~dvvii~vp---~~~~~~ 71 (291)
++|.|+|.|..|.+.++.|++.|++|+++|.++.. .+.+.+ .|+.+.. ...+...++|+||.... +...+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence 37999999999999999999999999999876543 334443 2655422 12334467899988742 222333
Q ss_pred HHHhc-c-----Cccc-cccC---CCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 72 SVVFD-K-----GGVL-EQIC---PGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 72 ~v~~~-~-----~~l~-~~l~---~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
..... . .++. .... ...+-|.-|++...+..-+...+...+..
T Consensus 86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 22210 0 0111 1121 12344555666777777777777776654
No 368
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.70 E-value=0.0049 Score=54.43 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=54.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHH---------------CCCccc-CCHHHHHhhCCEEEE
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---------------HGATVG-GSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~---------------~g~~~~-~~~~~~~~~~dvvii 62 (291)
|||+|+| .|.+|..+.+.|.++.. +++.+.++.++...... ....+. .++++ ..++|+||.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 4899998 79999999999987653 77777444433321111 011121 23333 478999999
Q ss_pred ecCCHHHHHHHHhccCccccccCCCcEEEEcCCC
Q 022834 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 63 ~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
|+|... ..++. +.+ ...+..+||.|..
T Consensus 83 a~p~~~-s~~~~---~~~---~~~G~~vIDls~~ 109 (349)
T PRK08664 83 ALPSDV-AGEVE---EEF---AKAGKPVFSNASA 109 (349)
T ss_pred eCChhH-HHHHH---HHH---HHCCCEEEECCch
Confidence 997753 33333 222 2356778888764
No 369
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.68 E-value=0.0087 Score=51.04 Aligned_cols=72 Identities=26% Similarity=0.286 Sum_probs=55.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
+|+|||- ..+|..++..|.++ +..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 163 ~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~----- 223 (297)
T PRK14168 163 EVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVK----- 223 (297)
T ss_pred EEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccC-----
Confidence 6889987 56799999999987 6788887542 1367788899999999998765322
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 224 ----~~~ik~gavVIDvGin 239 (297)
T PRK14168 224 ----PEWIKPGATVIDVGVN 239 (297)
T ss_pred ----HHHcCCCCEEEecCCC
Confidence 2346799999998755
No 370
>PRK06153 hypothetical protein; Provisional
Probab=96.68 E-value=0.0052 Score=54.08 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
+|+|||+|..|+.++..|++.|. +++++|.+.
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 79999999999999999999995 789998763
No 371
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.03 Score=52.01 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=67.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc--hhHHHHHC--CCcccC--CHHHHHhhCCEEEEe--cCCH-----H
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAH--GATVGG--SPAEVIKKCTITIGM--LADP-----A 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~~dvvii~--vp~~-----~ 68 (291)
+|.|+|.|..|.++++.|.+.|++|+++|.... ..+.+.+. |+.+.. ...+.++++|+||+. +|.. .
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~~ 88 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALAP 88 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccCH
Confidence 699999999999999999999999999997543 22345444 433321 233455678998886 3331 1
Q ss_pred HHHHHHh-cc-----Ccc-cccc--------CCCcEEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 69 AALSVVF-DK-----GGV-LEQI--------CPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 69 ~~~~v~~-~~-----~~l-~~~l--------~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
.+...-. +. .++ ...+ .+..+-|.-|++...+..-+...+...|..
T Consensus 89 ~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 89 LVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred HHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 1211110 00 001 1111 112344556667777777777777776544
No 372
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.66 E-value=0.009 Score=50.82 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=55.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||- .-+|..++..|.++ +..|+++... +.++.+..++||+||.+++++.-+.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~----- 219 (293)
T PRK14185 159 KCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------------SKNLKKECLEADIIIAALGQPEFVK----- 219 (293)
T ss_pred EEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------------CCCHHHHHhhCCEEEEccCCcCccC-----
Confidence 6889987 45699999999987 5678887542 1367788899999999998865332
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 220 ----~~~vk~gavVIDvGin 235 (293)
T PRK14185 220 ----ADMVKEGAVVIDVGTT 235 (293)
T ss_pred ----HHHcCCCCEEEEecCc
Confidence 2346799999998765
No 373
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.66 E-value=0.0068 Score=58.23 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=47.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCcccC--------CHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~ 51 (291)
+||+|||.|..|.+.|..|++.||+|+++++.+. ..+.+.+.|+.+.. +.+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~ 407 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE 407 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence 3799999999999999999999999999998643 12233344543311 334
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
++....|.||+++..
T Consensus 408 ~~~~~~DavilAtGa 422 (654)
T PRK12769 408 SLLEDYDAVFVGVGT 422 (654)
T ss_pred HHHhcCCEEEEeCCC
Confidence 445578889988844
No 374
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.62 E-value=0.044 Score=46.31 Aligned_cols=137 Identities=13% Similarity=0.063 Sum_probs=74.4
Q ss_pred eEEEEecChhhHHHHHHHHhCC-CcEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCH---
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADP--- 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~--- 67 (291)
+|.|+|+|.+|+..+..|++.| .+++++|.+.-....+..+ |..-+.-..+.+. +.++-+.+++..
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~ 111 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITP 111 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccCh
Confidence 7999999999999999999999 6799998765433333321 1100111111111 345545554321
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEec-----CCHHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA-----GEKAL 142 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----g~~~~ 142 (291)
+..++.+ ..+-++||++.. .+.....+.+...+.++.++...-.|+ ...+.-+-++ .....
T Consensus 112 e~~~~ll---------~~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~gGag~----k~dp~~~~~~di~~t~~~pl 177 (268)
T PRK15116 112 DNVAEYM---------SAGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTTGGAGG----QIDPTQIQVVDLAKTIQDPL 177 (268)
T ss_pred hhHHHHh---------cCCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEECCccc----CCCCCeEEEEeeecccCChH
Confidence 1222222 112357776544 344455677777777888885542222 1111112121 13344
Q ss_pred HHHHHHHHHH
Q 022834 143 YDEAISALNV 152 (291)
Q Consensus 143 ~~~~~~ll~~ 152 (291)
...++..|..
T Consensus 178 a~~~R~~lr~ 187 (268)
T PRK15116 178 AAKLRERLKS 187 (268)
T ss_pred HHHHHHHHHH
Confidence 5678888877
No 375
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.62 E-value=0.0054 Score=51.43 Aligned_cols=39 Identities=33% Similarity=0.371 Sum_probs=34.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
|+|.|+|+ |.+|..++..|.++||+|++..|++++...+
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 68999995 9999999999999999999999987765543
No 376
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.59 E-value=0.0087 Score=53.42 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=64.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|+|+|.+|+.++..|+..|. +++++|++.-....+..+ |...+....+.++ +.++-+.+.+....
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~- 215 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT- 215 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC-
Confidence 79999999999999999999996 699999874333333222 1111111222221 23444444322110
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++.+ ...+..-++||+++.. +.....+.+...+.++.++.+.+.|
T Consensus 216 ~~~~------~~~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 216 SDNV------EALLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred hHHH------HHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 0111 1122334677876655 3344456666777788888776544
No 377
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.57 E-value=0.0086 Score=57.31 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=48.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCccc--------CCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 51 (291)
.||+|||.|..|...+..|++.||+|+++++.+. ..+.+.+.|+.+. -+..
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 390 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS 390 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence 3799999999999999999999999999998753 2233444454321 1344
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
++....|.||+++..
T Consensus 391 ~l~~~~DaV~latGa 405 (639)
T PRK12809 391 DLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHhcCCEEEEeCCC
Confidence 555678999998854
No 378
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.56 E-value=0.022 Score=48.56 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=36.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~ 45 (291)
++.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|+.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 588999999999999888888986 88889888888777776653
No 379
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.55 E-value=0.013 Score=48.88 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=35.2
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+|.|+|+ |.+|..++..|.+.|++|++.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 88999985 99999999999999999999999987765543
No 380
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.54 E-value=0.014 Score=51.67 Aligned_cols=73 Identities=27% Similarity=0.326 Sum_probs=49.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcC---CcchhHHHHHCCCcccCCHHH------HHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAHGATVGGSPAE------VIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r---~~~~~~~l~~~g~~~~~~~~~------~~~~~dvvii~vp~~~~~~~ 72 (291)
+|.|+|+|.+|...+..+...|.+|+++++ ++++.+.+.+.|+......++ .....|++|-|+..+..+..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 254 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAFE 254 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHHH
Confidence 588999999999999888888999999988 567777666666543321111 11246777777755443443
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
.+
T Consensus 255 ~~ 256 (355)
T cd08230 255 AL 256 (355)
T ss_pred HH
Confidence 33
No 381
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.012 Score=50.19 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=55.0
Q ss_pred eEEEEecC-hhhHHHHHHHHhC----CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG-IMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||-+ -+|..++..|.++ +..|+++... +.++.+..++||+||.|+.++.-+.
T Consensus 159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~----- 219 (297)
T PRK14167 159 DVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------------TDDLAAKTRRADIVVAAAGVPELID----- 219 (297)
T ss_pred EEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC-----
Confidence 68899874 5799999999887 6788887542 1366788899999999998765322
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 220 ----~~~ik~gaiVIDvGin 235 (297)
T PRK14167 220 ----GSMLSEGATVIDVGIN 235 (297)
T ss_pred ----HHHcCCCCEEEEcccc
Confidence 2347799999998755
No 382
>PLN02477 glutamate dehydrogenase
Probab=96.52 E-value=0.014 Score=52.24 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEE-EEcCC----------cchhHHHHHCC--------CcccCCHHHH-HhhCCEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVAHG--------ATVGGSPAEV-IKKCTIT 60 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~-~~~r~----------~~~~~~l~~~g--------~~~~~~~~~~-~~~~dvv 60 (291)
++|+|.|+|++|...+..|.+.|.+|+ +.|.+ .+.+...++.+ .... +.+++ ..+||++
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl 285 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL 285 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence 479999999999999999999999988 66766 44443332221 1112 22332 3479988
Q ss_pred EEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 61 ii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-|--...-.++.. +.+ +-++|+...|+.. ..+..+.+.++|+.|+
T Consensus 286 iP~Al~~~I~~~na-------~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~ 331 (410)
T PLN02477 286 IPAALGGVINKENA-------ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVL 331 (410)
T ss_pred eeccccccCCHhHH-------HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEE
Confidence 87752211112222 223 4467777766643 3345567788887665
No 383
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.52 E-value=0.014 Score=51.17 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=63.9
Q ss_pred CeEEEEecChhhHHHHHHHHhC--------CCcEE---EEcCCcchhH-------HHHHCCC-c------ccCCHHHHH-
Q 022834 1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCD-------ELVAHGA-T------VGGSPAEVI- 54 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~--------g~~V~---~~~r~~~~~~-------~l~~~g~-~------~~~~~~~~~- 54 (291)
++|+++|+|.+|..++..|.++ |.++. +.+++..... .+.+.+. . ...+..+..
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT 82 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence 4899999999999999998753 44433 3355433221 1111100 0 111222222
Q ss_pred h--hCCEEEEecCCHHH-HHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEE-EcccCCC
Q 022834 55 K--KCTITIGMLADPAA-ALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL-EAPVSGS 123 (291)
Q Consensus 55 ~--~~dvvii~vp~~~~-~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 123 (291)
. +.|+||-|+|+... .+... +-+..++..|..||...... ....+++.+...+.++.|. ++.+-|+
T Consensus 83 ~~~~~dVvVe~T~s~~~~~e~a~---~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggG 153 (346)
T PRK06813 83 DNISGTVLVESTVTNLKDGNPGK---QYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAA 153 (346)
T ss_pred CCCCCCEEEECCCCccCCchHHH---HHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeec
Confidence 2 47999999875311 11111 12245567888888543321 1233556666667777776 5544433
No 384
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.51 E-value=0.0034 Score=54.55 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=45.6
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~v 64 (291)
|||.|.|. |.+|..++..|.+.|++|++.+|+++....+...++.. ..+..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 78999985 99999999999999999999999876654333223221 112334555678777665
No 385
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.018 Score=51.77 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=63.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHH--hhCCEEEEe--cCCH-HHH---HH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI--KKCTITIGM--LADP-AAA---LS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~~dvvii~--vp~~-~~~---~~ 72 (291)
|+|.|+|.|.-|.+.++.|. .|++|+++|..+.... +.+.|+... . .+.. +++|+||.. +|.. ..+ ++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 89999999999999999999 9999999996533221 223355553 2 2223 368977765 2221 222 22
Q ss_pred HHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcC
Q 022834 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG 112 (291)
Q Consensus 73 v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~ 112 (291)
++- ..++...+.+..+-|.-|++...+..-+...+...+
T Consensus 77 i~~-~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LIS-EYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred Hhh-HHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 220 011221121224455566677777777777777655
No 386
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.48 E-value=0.0075 Score=51.92 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=49.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHH---HHHC-C-----------CcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVAH-G-----------ATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~---l~~~-g-----------~~~~~~~~~~~~~~dvvii~v 64 (291)
|+|+|-|+ |.+|+.+...|.++||.|...-|+++.-+. +.+. + +.-..+.+++++.||.||-+-
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 57899977 999999999999999999999998886322 3332 1 233557788899999998654
No 387
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.48 E-value=0.022 Score=50.05 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=37.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT 45 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 45 (291)
+|.|+|+|.+|......+...|. +|++.++++++.+.+.+.|+.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 68899999999999988888897 588899999998887777754
No 388
>PRK06753 hypothetical protein; Provisional
Probab=96.44 E-value=0.0039 Score=55.46 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=32.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||+|..|.++|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 8999999999999999999999999999998765
No 389
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.44 E-value=0.012 Score=54.04 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=47.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCccc------C--CHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG------G--SPAE 52 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~------~--~~~~ 52 (291)
+|.|||.|..|...+..|++.|++|+++++.+. ..+.+.+.|+.+. . ..++
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~ 222 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDD 222 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHH
Confidence 799999999999999999999999999987642 1233445554431 1 2334
Q ss_pred HHhhCCEEEEecCC
Q 022834 53 VIKKCTITIGMLAD 66 (291)
Q Consensus 53 ~~~~~dvvii~vp~ 66 (291)
....+|.||+|+..
T Consensus 223 ~~~~~D~vilAtGa 236 (467)
T TIGR01318 223 LLEDYDAVFLGVGT 236 (467)
T ss_pred HHhcCCEEEEEeCC
Confidence 44568889988854
No 390
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.43 E-value=0.09 Score=43.49 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=79.2
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCH---
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADP--- 67 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~--- 67 (291)
||.|+|+|.+|+.++..|++.|. +++++|.+.-....+..+ |..-+....+.+. +.++-+.+.+..
T Consensus 13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~ 92 (231)
T cd00755 13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTP 92 (231)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCH
Confidence 79999999999999999999996 799998765433333222 2111111112111 345555554221
Q ss_pred HHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCChHhhcccceEEEecC-----CHHH
Q 022834 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAG-----EKAL 142 (291)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g-----~~~~ 142 (291)
+...+.+ ..+-++||++.-. +.....+.+...+.++.++...-.|+-.. +.-+-+.. ....
T Consensus 93 ~~~~~l~---------~~~~D~VvdaiD~-~~~k~~L~~~c~~~~ip~I~s~g~g~~~d----p~~i~i~di~~t~~~pl 158 (231)
T cd00755 93 DNSEDLL---------GGDPDFVVDAIDS-IRAKVALIAYCRKRKIPVISSMGAGGKLD----PTRIRVADISKTSGDPL 158 (231)
T ss_pred hHHHHHh---------cCCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeCCcCCCC----CCeEEEccEeccccCcH
Confidence 1122222 1123577776544 44445677777777888886643332111 11121111 2234
Q ss_pred HHHHHHHHHHhc----cceEeeCC
Q 022834 143 YDEAISALNVIG----KKAFFLGE 162 (291)
Q Consensus 143 ~~~~~~ll~~~g----~~~~~~~~ 162 (291)
...++..|..-+ .+++|..+
T Consensus 159 a~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 159 ARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred HHHHHHHHHHcCCCCCeEEEeCCC
Confidence 557777777744 33455444
No 391
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.43 E-value=0.012 Score=56.48 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=48.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch---------------------hHHHHHCCCccc--------CCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATVG--------GSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~~--------~~~~ 51 (291)
+||+|||+|..|...|..|++.||+|+++++++.. .+.+...|+.+. -+.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~ 273 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE 273 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence 47999999999999999999999999999876532 233444454431 1234
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
+....+|.||+++..
T Consensus 274 ~~~~~~DaVilAtGa 288 (652)
T PRK12814 274 ELQKEFDAVLLAVGA 288 (652)
T ss_pred HHHhhcCEEEEEcCC
Confidence 444568999999854
No 392
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.42 E-value=0.0049 Score=48.75 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=43.7
Q ss_pred eEEEEecChhhHHHH--HHHHhC----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEEe
Q 022834 2 EVGFLGLGIMGKAIS--MNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM 63 (291)
Q Consensus 2 kI~iIG~G~mG~~la--~~l~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii~ 63 (291)
||+|||+|+.-.... ..+... +.++.++|+++++++.... .| +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 899999999876633 233332 2379999999998874322 23 23477899999999999998
Q ss_pred cCC
Q 022834 64 LAD 66 (291)
Q Consensus 64 vp~ 66 (291)
+..
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 743
No 393
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.41 E-value=0.011 Score=50.87 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=72.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHH---HHHHHhc--
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA---ALSVVFD-- 76 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~---~~~v~~~-- 76 (291)
+|+|||.-.=-..++..|.+.|++|.++.-+.+.. ...|+...++.+++++++|+|+..+|.... +...+..
T Consensus 4 ~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 4 HIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 79999999999999999999999999976543222 233888888888889999999999864211 1111000
Q ss_pred ---cCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEc
Q 022834 77 ---KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (291)
Q Consensus 77 ---~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
+++....++++.+++ .+...|.. .+.+.++++.+++.
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~ 120 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVEL 120 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEE
Confidence 012345566776544 35555542 23455778777643
No 394
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.41 E-value=0.012 Score=48.79 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=61.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+....+.++ +.++-+.+.... +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~--i 78 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK--V 78 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc--C
Confidence 68999999999999999999996 688988765443334332 1111111111111 234444443221 1
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.+.. ..-...++.-++|++... ....-..+.+.....++.++++...|
T Consensus 79 ~~~~---~~~~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 79 GPEQ---DFNDTFFEQFHIIVNALD-NIIARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred Chhh---hchHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEcccC
Confidence 0000 000112333456666543 34444556666666677787766443
No 395
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.40 E-value=0.047 Score=44.70 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=48.1
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc-chhHHHHHCC-Cccc---CCHHHHHhhCCEEEEecCCHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADPAA 69 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g-~~~~---~~~~~~~~~~dvvii~vp~~~~ 69 (291)
++|.|||.|.++..=+..|.+.|.+|+++...- +.+..+.+.| +++. -+.. .+..+++||.|+.++..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~-dl~g~~LViaATdD~~v 98 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE-FIKDKHLIVIATDDEKL 98 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH-HhCCCcEEEECCCCHHH
Confidence 379999999999999999999999999997543 2344444433 3222 1333 35789999999966443
No 396
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.38 E-value=0.022 Score=50.38 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-+.+.+..-..
T Consensus 30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~ 109 (355)
T PRK05597 30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW 109 (355)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCH
Confidence 79999999999999999999996 688998765332222221 2111111112111 345555554221111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
+... ..+..-++||+++-. ..+...+.....+.++.++.+.+.|.
T Consensus 110 ~~~~-------~~~~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 110 SNAL-------DELRDADVILDGSDN-FDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred HHHH-------HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1111 122334677776544 33334455555666777776654443
No 397
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.33 E-value=0.0092 Score=52.60 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=53.2
Q ss_pred CeEEEEec-ChhhHHHHH-HHHhCCCc---EEEEcCCc--chhHHHHHCCCcccC--CHHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISM-NLLRNGFK---VTVWNRTL--SKCDELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~-~l~~~g~~---V~~~~r~~--~~~~~l~~~g~~~~~--~~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|+|+|||+ |.+|..|.+ .|....++ +..+.... .+...+..+...+.. +.+ ...++|++|+|+|.. ..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~~~-~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQGGD-YTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCCHH-HHH
Confidence 58999998 999999998 55566676 66654321 111112221122222 233 346899999999664 444
Q ss_pred HHHhccCccccccCCC--cEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPG--KGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~--~~vv~~s~~ 96 (291)
++. +++ ...| .+|||.|+.
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAST 100 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECChH
Confidence 454 333 2356 569998864
No 398
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.33 E-value=0.01 Score=55.31 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCccc--CCHHHH-HhhCCEEEEecCCHHHHHHHHhcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG--GSPAEV-IKKCTITIGMLADPAAALSVVFDK 77 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~-~~~~dvvii~vp~~~~~~~v~~~~ 77 (291)
++.|+|+|.+|.+++..|++.|.+|++++|+.++++.+.+. +.... .+..+. ...+|+|+-|+|-...-. .- .
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~-~~--~ 457 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPN-VD--E 457 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCC-CC--C
Confidence 57899999999999999999999999999999988887653 21111 111111 124567776665432100 00 0
Q ss_pred Ccc-ccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 78 GGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 78 ~~l-~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..+ ...+++..+++|+.-....+ .+.+...+.|+..+
T Consensus 458 ~pl~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 495 (529)
T PLN02520 458 TPISKHALKHYSLVFDAVYTPKIT--RLLREAEESGAIIV 495 (529)
T ss_pred CcccHhhCCCCCEEEEeccCCCcC--HHHHHHHHCCCeEe
Confidence 001 12344567777765443221 22333344555544
No 399
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.031 Score=51.35 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=66.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch-h----HHHHHCCCcccC--CHH-----HHHhhCCEEEEecC---C
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-C----DELVAHGATVGG--SPA-----EVIKKCTITIGMLA---D 66 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~----~~l~~~g~~~~~--~~~-----~~~~~~dvvii~vp---~ 66 (291)
||.|||.|..|.+.++.|.+.|++|+++|+.+.. . +.+.+.|+++.. ... +...++|.|+..-. +
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 7999999999999999999999999999976432 2 235555765522 111 34567898887532 1
Q ss_pred HHHHHHHHh-cc---Ccc---ccccCCCc-EEEEcCCCCHHHHHHHHHHHHhcCCc
Q 022834 67 PAAALSVVF-DK---GGV---LEQICPGK-GYIDMSTVDHETSIKISRAITSKGGH 114 (291)
Q Consensus 67 ~~~~~~v~~-~~---~~l---~~~l~~~~-~vv~~s~~~~~~~~~~~~~~~~~~~~ 114 (291)
...+..... +. .++ .....+.+ +-|.-|++...+..-+...+...|..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~ 137 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLN 137 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCC
Confidence 122222210 00 111 11112223 44555566777777777777766543
No 400
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.31 E-value=0.017 Score=49.35 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=53.5
Q ss_pred eEEEEecC-hhhHHHHHHHHh----CCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGLG-IMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G-~mG~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||-+ -+|..++..|.+ .+..|++...+. .++.+.+++||++|.+++++.-+.
T Consensus 161 ~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~li~----- 221 (295)
T PRK14174 161 HCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARFIT----- 221 (295)
T ss_pred EEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCccC-----
Confidence 68889874 569999999887 577888876542 356788899999999997753211
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
..++++|.+|||.+..
T Consensus 222 ----~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 222 ----ADMVKPGAVVIDVGIN 237 (295)
T ss_pred ----HHHcCCCCEEEEeecc
Confidence 2345799999998755
No 401
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.29 E-value=0.0096 Score=53.84 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred CeEEEEecChh-hHHHHHHHHhC-----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~m-G~~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|+. ...+...|.+. +-+|.++|.++++.+.... .| +..+.|.+++++++|+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 89999999984 33455555543 3579999999988765322 23 3457789999999999999
Q ss_pred ec
Q 022834 63 ML 64 (291)
Q Consensus 63 ~v 64 (291)
.+
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 86
No 402
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.29 E-value=0.0054 Score=55.44 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||.|-+|.+.|..|+++|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 8999999999999999999999999999999643
No 403
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.28 E-value=0.016 Score=49.15 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=54.5
Q ss_pred eEEEEec-ChhhHHHHHHHHh----CCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhc
Q 022834 2 EVGFLGL-GIMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~ 76 (291)
++.|||- .-+|..++..|.+ .+..|+++..+. .++.+.+++||+||.+++++.-+..
T Consensus 159 ~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~~---- 220 (286)
T PRK14184 159 KAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVTA---- 220 (286)
T ss_pred EEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCCH----
Confidence 6889987 4569999999998 667888876532 3677888999999999977543221
Q ss_pred cCccccccCCCcEEEEcCCC
Q 022834 77 KGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 77 ~~~l~~~l~~~~~vv~~s~~ 96 (291)
.++++|.+|||.+..
T Consensus 221 -----~~vk~GavVIDVGi~ 235 (286)
T PRK14184 221 -----DMVKPGAVVVDVGIN 235 (286)
T ss_pred -----HHcCCCCEEEEeeee
Confidence 345789999998754
No 404
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.012 Score=50.63 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=55.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCc---EEEE--cCCcchh-HHHHHCCCcccCC--HHHHHhhCCEEEEecCCHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKC-DELVAHGATVGGS--PAEVIKKCTITIGMLADPAAAL 71 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~---V~~~--~r~~~~~-~~l~~~g~~~~~~--~~~~~~~~dvvii~vp~~~~~~ 71 (291)
|||+|+|+ |.+|..|...|.+..+. +.++ .|+..+- -.+......+..+ .....+++|++|.|.|.+.. +
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s-~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS-K 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH-H
Confidence 58999976 99999999999996553 3344 3333222 2233222333331 12234579999999966443 5
Q ss_pred HHHhccCccccccCCCcEEEEcCCC
Q 022834 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (291)
Q Consensus 72 ~v~~~~~~l~~~l~~~~~vv~~s~~ 96 (291)
++. +++ .+.|.+|||.|+.
T Consensus 81 ~~~---p~~---~~~G~~VIdnsSa 99 (334)
T COG0136 81 EVE---PKA---AEAGCVVIDNSSA 99 (334)
T ss_pred HHH---HHH---HHcCCEEEeCCcc
Confidence 555 333 3467888987765
No 405
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.25 E-value=0.016 Score=52.76 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=50.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch---------------------hHHHHHCCCcc--------cCCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATV--------GGSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~--------~~~~~ 51 (291)
.+|+|||.|.-|.+.+..|++.||+|+++++.+.. ++.+.+.|+.+ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 47999999999999999999999999999886542 22333444322 33678
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
++.++.|.|++|+..
T Consensus 204 ~L~~e~Dav~l~~G~ 218 (457)
T COG0493 204 ELLKEYDAVFLATGA 218 (457)
T ss_pred HHHHhhCEEEEeccc
Confidence 888888999999843
No 406
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.24 E-value=0.021 Score=51.66 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=65.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEE-c----------CCcchhHHHHHC------------CCcccCCHHHHH-hh
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-N----------RTLSKCDELVAH------------GATVGGSPAEVI-KK 56 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~-~----------r~~~~~~~l~~~------------g~~~~~~~~~~~-~~ 56 (291)
++|+|.|.|++|...+..|.+.|.+|+.+ | .+.+.+...++. +.... +.+++. .+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~d 311 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSVP 311 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccccC
Confidence 48999999999999999999999998866 7 455544433322 11111 233332 37
Q ss_pred CCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 57 ~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
|||++-|.....-..+.. .++.+ .+-++|+...|+.. ..+-.+.+.++|+.|+
T Consensus 312 ~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~v 364 (445)
T PRK09414 312 CDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFA 364 (445)
T ss_pred CcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEE
Confidence 999998875443333333 22221 12356676666643 3345566778887665
No 407
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.23 E-value=0.006 Score=55.06 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=30.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
+|.|||.|-+|.+.|..|++.|++|+++++..
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 89999999999999999999999999999875
No 408
>PRK08309 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.028 Score=44.51 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=34.9
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|++.|+|...||..++..|.+.|++|.+.+|++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence 8899999878889999999999999999999887766554
No 409
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.17 E-value=0.013 Score=53.13 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=46.9
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-----CCcEEEEcCCcchhHHHHH--------CC----CcccCCHHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvii 62 (291)
|||+|||+|+.=+ .+...|.+. +-+|+++|.++++++.... .| +..+.|.++++++||.||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 8999999998622 344555543 3579999999988765322 13 3456789999999999999
Q ss_pred ec
Q 022834 63 ML 64 (291)
Q Consensus 63 ~v 64 (291)
+.
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 86
No 410
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.16 E-value=0.018 Score=49.79 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=63.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCccc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~ 81 (291)
++.|.|+|..|..+|..+...|.+|.++..+|-++-...=+|.++. ..++++..+|++|.|+.... |+. .+-.
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd----Vi~--~eh~ 283 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD----VIR--KEHF 283 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC----ccC--HHHH
Confidence 4677899999999999999999999999998876655555687765 57788889999999985532 221 1112
Q ss_pred cccCCCcEEEEcC
Q 022834 82 EQICPGKGYIDMS 94 (291)
Q Consensus 82 ~~l~~~~~vv~~s 94 (291)
...+.+.++.+..
T Consensus 284 ~~MkDgaIl~N~G 296 (420)
T COG0499 284 EKMKDGAILANAG 296 (420)
T ss_pred HhccCCeEEeccc
Confidence 2355666766554
No 411
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.14 E-value=0.013 Score=52.93 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=46.3
Q ss_pred CeEEEEecChhhH-HHHHHHHhC-----CCcEEEEcCC-cchhHHHHH--------CC----CcccCCHHHHHhhCCEEE
Q 022834 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRT-LSKCDELVA--------HG----ATVGGSPAEVIKKCTITI 61 (291)
Q Consensus 1 mkI~iIG~G~mG~-~la~~l~~~-----g~~V~~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvvi 61 (291)
|||+|||+|+.-+ .+...|.+. +-+|.++|++ +++++.... .| +..+.+.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 8999999999744 344555542 2479999999 777654221 23 334678899999999999
Q ss_pred Eec
Q 022834 62 GML 64 (291)
Q Consensus 62 i~v 64 (291)
++.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 986
No 412
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.12 E-value=0.087 Score=47.19 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=63.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCccc---CCHHHHH-----hhCCEEEEecCCHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEVI-----KKCTITIGMLADPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~~~-----~~~dvvii~vp~~~~~~~v 73 (291)
++-|+|.|.+|..++..|.+.|+++++.+.+ +.+...+.+..+. .+.++.+ ++|+.++++++++..-..+
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 4789999999999999999999999999865 2333333443221 1222333 4789999988776544444
Q ss_pred HhccCccccccCCC-cEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcc
Q 022834 74 VFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 74 ~~~~~~l~~~l~~~-~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+. . .+.+.++ ++++-.. .+.. .+.+.+.|...+-.|
T Consensus 320 vL---~-ar~l~p~~kIIa~v~--~~~~----~~~L~~~GaD~VIsp 356 (393)
T PRK10537 320 VL---A-AKEMSSDVKTVAAVN--DSKN----LEKIKRVHPDMIFSP 356 (393)
T ss_pred HH---H-HHHhCCCCcEEEEEC--CHHH----HHHHHhcCCCEEECH
Confidence 41 1 2223333 4555332 2332 334455677776555
No 413
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.11 E-value=0.017 Score=49.22 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999995 688887653
No 414
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.11 E-value=0.0092 Score=39.12 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=27.1
Q ss_pred EEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 5 iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|||+|.-|...|..|+++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
No 415
>PRK07538 hypothetical protein; Provisional
Probab=96.11 E-value=0.0072 Score=54.65 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||+|-.|.++|..|+++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 8999999999999999999999999999998764
No 416
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.013 Score=50.86 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=50.2
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH-HCCCcc-cC---CHHHHHhhCCEE---EEecCCHHHHHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATV-GG---SPAEVIKKCTIT---IGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-~~g~~~-~~---~~~~~~~~~dvv---ii~vp~~~~~~~ 72 (291)
|+|||||.|-.|..|+..-..-|++|.+.|.+++...... +.-+.. .+ .+.++++.||+| |.-+|. +.++.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~-~aL~~ 80 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA-EALEK 80 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH-HHHHH
Confidence 5799999999999999999999999999998876544332 222222 22 345677789987 334533 34444
Q ss_pred HH
Q 022834 73 VV 74 (291)
Q Consensus 73 v~ 74 (291)
+.
T Consensus 81 l~ 82 (375)
T COG0026 81 LA 82 (375)
T ss_pred HH
Confidence 43
No 417
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.09 E-value=0.048 Score=46.46 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=56.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHCCCcccCCHH-------HHHh-----hCCEEEEecCCHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPA-------EVIK-----KCTITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~-------~~~~-----~~dvvii~vp~~~ 68 (291)
.++|+|+|.+|.+.+..-..+|. +++.+|.|+++.+..++.|++-.-++. |.+. ..|+-|-|+.+.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~ 274 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVS 274 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHH
Confidence 58999999999999999988885 699999999999998888865433333 3322 3688888887766
Q ss_pred HHHHHH
Q 022834 69 AALSVV 74 (291)
Q Consensus 69 ~~~~v~ 74 (291)
.+.+.+
T Consensus 275 ~m~~al 280 (375)
T KOG0022|consen 275 TMRAAL 280 (375)
T ss_pred HHHHHH
Confidence 666665
No 418
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.08 E-value=0.021 Score=49.38 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=62.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+.+... .+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~--~i 78 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA--NI 78 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec--cC
Confidence 68999999999999999999995 699998765443333322 1111111112221 24444444311 11
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
.+.. .....+..-++|+++. ..+.....+.+.....++.++++...|
T Consensus 79 ~~~~----~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 79 KDPD----FNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCcc----chHHHHhcCCEEEECC-CCHHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1100 0012233335666543 345555556677777788888766444
No 419
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.08 E-value=0.026 Score=47.46 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|++.|.|. |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 88999976 88999999999999999999999987665543
No 420
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.07 E-value=0.021 Score=47.53 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=28.8
Q ss_pred CeEEEEecChhhHHHHHHHHhCC-----------CcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNG-----------FKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g-----------~~V~~~~r~~~ 34 (291)
.||.|||+|.+|+.++..|++.| .+++++|.+.=
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 37999999999999999999863 28899987643
No 421
>PRK07411 hypothetical protein; Validated
Probab=96.07 E-value=0.042 Score=49.27 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~ 33 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 40 ~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 40 SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 79999999999999999999996 688888753
No 422
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.06 E-value=0.026 Score=47.37 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=35.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
++.|-|+ +.+|..+|+.|+++|++|+++.|+.++++.+.+
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 4556677 999999999999999999999999999988765
No 423
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.05 E-value=0.019 Score=49.04 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=27.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~ 32 (291)
||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999996 58888765
No 424
>PLN02427 UDP-apiose/xylose synthase
Probab=96.04 E-value=0.015 Score=51.99 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=45.7
Q ss_pred CeEEEEe-cChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHCC-------Ccc-------cCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATV-------GGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~-------~~~~~~~~~~~dvvii~v 64 (291)
|||.|.| +|-+|+.++..|.++ |++|++++|+.++...+...+ +.+ ..+..++++++|+||-+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 7899997 599999999999998 599999998877665544321 111 112344566789888765
No 425
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.12 Score=47.17 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=66.8
Q ss_pred eEEEEecChhhHHHHHHHHhC--CCcEEEEcCCcch--hHHHHHCCCccc-C-CHHHHHhhCCEEEEec--C-CHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK--CDELVAHGATVG-G-SPAEVIKKCTITIGML--A-DPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~--g~~V~~~~r~~~~--~~~l~~~g~~~~-~-~~~~~~~~~dvvii~v--p-~~~~~~~ 72 (291)
||.|||.|..|.+-++.|.+. |++|+++|..+.. .+.+.+ |+.+. . ...+.+.++|+||+.- | +...+..
T Consensus 9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~~ 87 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQQ 87 (438)
T ss_pred eEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHHH
Confidence 699999999999999999987 5889999975432 233533 76652 1 1233456789877764 2 2222322
Q ss_pred HHh-c-----cCccc-cccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 73 VVF-D-----KGGVL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 73 v~~-~-----~~~l~-~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
... + ..++. ...+...+-|.-|++...+..-+...+...+...
T Consensus 88 a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 88 VLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred HHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 210 0 00121 1222223445556667777777777777766543
No 426
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.03 E-value=0.038 Score=47.13 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=30.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~ 35 (291)
||.|+|+|.+|..++.+|+.+|. +++++|.+.-.
T Consensus 21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve 55 (286)
T cd01491 21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCS 55 (286)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccc
Confidence 79999999999999999999995 69999876433
No 427
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.01 E-value=0.046 Score=49.06 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 34 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.=
T Consensus 44 ~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~v 77 (392)
T PRK07878 44 RVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVV 77 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 79999999999999999999996 6889987643
No 428
>PRK07588 hypothetical protein; Provisional
Probab=96.00 E-value=0.009 Score=53.56 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=31.7
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
|+|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 7999999999999999999999999999987654
No 429
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.045 Score=46.41 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=32.5
Q ss_pred Ce-EEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 ME-VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mk-I~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|| +.|.|+ |.+|..++..|++.|++|++.+|+++..+.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA 42 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 55 455564 99999999999999999999999877665544
No 430
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.98 E-value=0.01 Score=49.59 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=44.5
Q ss_pred ecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh-hCCEEEEec
Q 022834 7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGML 64 (291)
Q Consensus 7 G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvvii~v 64 (291)
|.|-+|++|...|.+.||+|++..|++.+.+.....++...+..++... ++|+||---
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence 6799999999999999999999999988876655444444445555554 589887554
No 431
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.94 E-value=0.039 Score=45.42 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=57.3
Q ss_pred eEEEE-ec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCc
Q 022834 2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (291)
Q Consensus 2 kI~iI-G~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~ 79 (291)
||.+| |+ ..+|.++++.|+++|++|.+..|+.++++.++.+--. ..+..+.+=|.+...++..+ +.
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---------~~~~~~~~DVtD~~~~~~~i---~~ 74 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---------GAALALALDVTDRAAVEAAI---EA 74 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---------CceEEEeeccCCHHHHHHHH---HH
Confidence 45556 66 7899999999999999999999999999988753211 22333444455666777777 55
Q ss_pred cccccCCCcEEEEcCCC
Q 022834 80 VLEQICPGKGYIDMSTV 96 (291)
Q Consensus 80 l~~~l~~~~~vv~~s~~ 96 (291)
+...+.+=+++|+....
T Consensus 75 ~~~~~g~iDiLvNNAGl 91 (246)
T COG4221 75 LPEEFGRIDILVNNAGL 91 (246)
T ss_pred HHHhhCcccEEEecCCC
Confidence 55555555677765443
No 432
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.94 E-value=0.03 Score=51.61 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=30.5
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 479999999999999999999999999998764
No 433
>PRK14851 hypothetical protein; Provisional
Probab=95.92 E-value=0.049 Score=52.19 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=64.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||+|+|+|.+|+.++..|+..|. +++++|.+.=....+..+ |..-+.-..+.+. +.++-|.+.+..-.-
T Consensus 45 ~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~ 124 (679)
T PRK14851 45 KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINA 124 (679)
T ss_pred eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCCh
Confidence 79999999999999999999995 688888764333333322 2111111122221 345555555332111
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
+. + ...+..-++|||++... ......+.+...+.++.++.+.+.|
T Consensus 125 ~n-~------~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 125 DN-M------DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred HH-H------HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 11 1 12233447888877653 3334456666667788888665433
No 434
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.91 E-value=0.02 Score=53.39 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=33.5
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
.|.|.|+ |.+|..++..|++.|++|++++|+.++.+.+.
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 4667775 99999999999999999999999988876553
No 435
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.032 Score=47.97 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.|+ |.+|..++..|++.|++|.+.+|+.++.+.+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5677775 99999999999999999999999987766544
No 436
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.89 E-value=0.049 Score=48.40 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=29.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 34 (291)
+|.|||+|.+|+.++..|+..|. +++++|.+.=
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 79999999999999999999995 7999988743
No 437
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.88 E-value=0.01 Score=53.24 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|-.|.++|..|++.|++|+++++.++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 3899999999999999999999999999998754
No 438
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.88 E-value=0.03 Score=48.60 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.0
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
|+|.|.| +|.+|+.++..|.++||+|++.+|+.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 5788998 6999999999999999999998887654
No 439
>PRK06182 short chain dehydrogenase; Validated
Probab=95.87 E-value=0.051 Score=46.00 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=33.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5677775 99999999999999999999999987766554
No 440
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.86 E-value=0.03 Score=48.68 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=23.3
Q ss_pred eEEEEecChhhHHHHHHHHhCC----CcEEEE
Q 022834 2 EVGFLGLGIMGKAISMNLLRNG----FKVTVW 29 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g----~~V~~~ 29 (291)
||||+|+|++|..+.+.|.+.+ ++|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 6999999999999999988753 666644
No 441
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.86 E-value=0.012 Score=51.64 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=29.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
+|.|||+|--|..+|..|+++|++|+++++++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 7999999999999999999999999999987653
No 442
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.017 Score=47.51 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=36.0
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
||+.|.|+ |.+|.+++..|++.|++|++.+|++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 89999987 999999999999999999999999877765543
No 443
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.85 E-value=0.019 Score=50.56 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=43.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhC-CCcEEEEcCCcchhHHHHHC-CCcc-----cCC---HHHHHhhCCEEEEe
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-----GGS---PAEVIKKCTITIGM 63 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-g~~~-----~~~---~~~~~~~~dvvii~ 63 (291)
|||.|.|+ |.+|+.++..|.+. |++|++++|+.++...+... ++.+ .++ ..++++++|+||-+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 68999996 99999999999876 69999999876554444322 2221 111 22455678988854
No 444
>PRK14852 hypothetical protein; Provisional
Probab=95.85 E-value=0.056 Score=53.28 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=65.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
||+|||+|.+|+.++..|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-|.+.+..- .
T Consensus 334 rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I-~ 412 (989)
T PRK14852 334 RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGV-A 412 (989)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCC-C
Confidence 79999999999999999999995 688888764333333332 2211222222222 4555555553311 1
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCH-HHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++.+ +++ ++.-++|||+..... .....+.....+.++.++.+.+.|
T Consensus 413 ~en~---~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 413 AETI---DAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred HHHH---HHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 1111 122 233478888776533 333455555566788888666443
No 445
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.85 E-value=0.076 Score=48.77 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=68.3
Q ss_pred CeEEEEec----------ChhhHHHHHHHHhCCCcEEEEcCCcchhHH--HHH--------------------CCCcccC
Q 022834 1 MEVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDE--LVA--------------------HGATVGG 48 (291)
Q Consensus 1 mkI~iIG~----------G~mG~~la~~l~~~g~~V~~~~r~~~~~~~--l~~--------------------~g~~~~~ 48 (291)
.||+|+|+ .+-...++..|.+.|.+|.+||.--...+. ... .++...+
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 37899997 456889999999999999999986433221 110 0234456
Q ss_pred CHHHHHhhCCEEEEecCCHHHHHHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEE
Q 022834 49 SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (291)
Q Consensus 49 ~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
+..++++++|+|++++..+ .++..-. +.+.+.+.+..+|+|.-+.... +.+.+.|+.|..
T Consensus 405 ~~~~a~~~aD~vvi~t~~~-ef~~l~~--~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 405 DAYEATKGAHGICILTEWD-EFKTLDY--QKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred CHHHHhcCCCEEEECCCCh-HhcccCH--HHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 7778899999999999554 3333210 2333334344589998777532 122344777764
No 446
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.84 E-value=0.011 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 34 (291)
|||.|||+|--|.++|..|+++|+ +|+++++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 799999999999999999999985 9999998765
No 447
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.82 E-value=0.034 Score=45.93 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=32.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|.++|++|++.+|++++.+.+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 6888875 9999999999999999999999997765543
No 448
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.82 E-value=0.023 Score=53.57 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=47.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc---------------------chhHHHHHCCCccc------C--CHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---------------------SKCDELVAHGATVG------G--SPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~---------------------~~~~~l~~~g~~~~------~--~~~ 51 (291)
.+|.|||+|..|...+..|++.|++|+++++.+ ...+.+.+.|+.+. . +.+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~ 217 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE 217 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence 379999999999999999999999999998643 22334455565321 1 123
Q ss_pred HHHhhCCEEEEecCC
Q 022834 52 EVIKKCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~~~dvvii~vp~ 66 (291)
+.....|+||+++..
T Consensus 218 ~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 218 QLEGEFDAVFVAIGA 232 (564)
T ss_pred HHHhhCCEEEEeeCC
Confidence 334468999999854
No 449
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.80 E-value=0.047 Score=47.26 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=45.8
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~ 74 (291)
++.|+|+|.+|...+..+...|.+ |.+.++++++++...+.. +.+..++.-...|++|-|+..+..+...+
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~ 218 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLV 218 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHH
Confidence 588999999999998887778987 556687776665443322 11111111234788888886654455544
No 450
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.76 E-value=0.033 Score=47.11 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=62.4
Q ss_pred eEEE-EecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGF-LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~i-IG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
|+++ -|+|.+|..-+..|...|..|++-..+|-.+-+..=+|.+++ +.+|+.++.|+++.++.... ++. .+-
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~d----ii~--~~H 287 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCKD----IIT--GEH 287 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCcc----hhh--HHH
Confidence 4554 499999999999999999999999888765544444577765 78899999999998885422 221 122
Q ss_pred ccccCCCcEEEEcCCC
Q 022834 81 LEQICPGKGYIDMSTV 96 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~~ 96 (291)
....+.+.+|+++.-.
T Consensus 288 ~~~mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 288 FDQMKNDAIVCNIGHF 303 (434)
T ss_pred HHhCcCCcEEeccccc
Confidence 3345567777765543
No 451
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.76 E-value=0.27 Score=41.30 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=36.3
Q ss_pred CeEEEEecChhhHHHHHHHH-hCCCcEE-EEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEec
Q 022834 1 MEVGFLGLGIMGKAISMNLL-RNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~-~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~v 64 (291)
|++.++|.|++|....+.|. +.+++++ .|+++.++.- .+..|+...+|..+++.
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~G----------kdlgelagl~dlgV~a~ 58 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSG----------KDLGELAGLPDLGVIAT 58 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecCccccc----------ccHHHhcCCCCceeEee
Confidence 57889999999996666655 4599966 6899877653 24445555555444443
No 452
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.76 E-value=0.012 Score=52.86 Aligned_cols=33 Identities=33% Similarity=0.621 Sum_probs=31.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
++|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 479999999999999999999999999999973
No 453
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.05 Score=46.24 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=33.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
+|.|.|+ |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 4777765 999999999999999999999999877665543
No 454
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.04 Score=45.43 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=32.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|+|+ |.+|..++..|+++|++|++.+|++++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 5778875 9999999999999999999999988766554
No 455
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.041 Score=45.73 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=33.1
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
++|.|.|+ |.+|..++..|.+.|++|.+.+|++++.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 35778875 9999999999999999999999988766554
No 456
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.053 Score=46.11 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=35.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 42 (291)
+|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+.+.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 4677777 9999999999999999999999998877766543
No 457
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.72 E-value=0.026 Score=56.23 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=48.4
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc---------------------hhHHHHHCCCccc--------CCHH
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 51 (291)
.||+|||+|.-|.+-|..|++.||+|+++++.+. ..+.+.+.|+.+. -+.+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~ 386 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence 3899999999999999999999999999987642 1123344455421 2455
Q ss_pred HHHh-hCCEEEEecCC
Q 022834 52 EVIK-KCTITIGMLAD 66 (291)
Q Consensus 52 ~~~~-~~dvvii~vp~ 66 (291)
++.+ ..|.||+++..
T Consensus 387 ~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 387 DLKAAGFWKIFVGTGA 402 (944)
T ss_pred HhccccCCEEEEeCCC
Confidence 6554 58999999843
No 458
>PRK05868 hypothetical protein; Validated
Probab=95.72 E-value=0.015 Score=51.93 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=32.0
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~ 35 (291)
|+|.|||.|..|.++|..|+++|++|+++++.++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 47999999999999999999999999999987653
No 459
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.041 Score=45.81 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=32.4
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
++.|.|+ |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 5778876 9999999999999999999999987655443
No 460
>PRK07236 hypothetical protein; Provisional
Probab=95.72 E-value=0.014 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.6
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|-.|..+|..|+++|++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4899999999999999999999999999998754
No 461
>PRK08017 oxidoreductase; Provisional
Probab=95.67 E-value=0.024 Score=47.40 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=34.7
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 41 (291)
+|.|.|+ |.+|..++..|.++|++|++.+|++++.+.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 6888988 999999999999999999999999877665543
No 462
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.045 Score=45.79 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=32.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEV 45 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5667764 9999999999999999999999987765544
No 463
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.66 E-value=0.03 Score=49.48 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.4
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
|||.|.| +|.+|+.+++.|.+.|++|++.+|++++.+.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 7899998 59999999999999999999988877655443
No 464
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.66 E-value=0.21 Score=49.37 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=69.4
Q ss_pred eEEEEecChhhHHH-HHHHHhCCCcEEEEcCCcc-hhHHHHHCCCcccC-CHHHHHhhCCEEEEec--C-CHHHHHHHHh
Q 022834 2 EVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF 75 (291)
Q Consensus 2 kI~iIG~G~mG~~l-a~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvvii~v--p-~~~~~~~v~~ 75 (291)
+|.|||.|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.+.. ...+.+.++|+||+.- | +...+.....
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 49999999999997 9999999999999997542 34456666776532 2334556789888653 1 2122222210
Q ss_pred -c-----cCccccc-cCC-CcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 76 -D-----KGGVLEQ-ICP-GKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 76 -~-----~~~l~~~-l~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
+ ..++... .+. ..+-|.-|++...+..-+...+...|.
T Consensus 86 ~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 86 RGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 0 0012111 222 234565666777777777788877654
No 465
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.24 Score=45.23 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=66.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcch--hHHHHHCCCcccC--CHHHHHhhCCEEEEec--C-CHHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGG--SPAEVIKKCTITIGML--A-DPAAALSVV 74 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~~dvvii~v--p-~~~~~~~v~ 74 (291)
+|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+ +.|+.+.. ...+.+++.|++|..- | +...+....
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 86 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAAA 86 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 6999999999999999999999999999965432 2334 33665532 2334456778665543 1 212222221
Q ss_pred hc------cCccccc-cCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcE
Q 022834 75 FD------KGGVLEQ-ICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (291)
Q Consensus 75 ~~------~~~l~~~-l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~ 115 (291)
.. ..++... .....+-|.-|++...+..-+.+.+...|..+
T Consensus 87 ~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 134 (438)
T PRK03806 87 DAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKV 134 (438)
T ss_pred HCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCE
Confidence 10 0012111 22223446566677777777788887765543
No 466
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.029 Score=47.37 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=51.7
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcc-------cCCHHHHHhhCCEEEEecC
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvvii~vp 65 (291)
|+|.|.|+ |.+|..+...|.++|++|.+..|++++...+. .++.+ ..+....++..|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 78999965 99999999999999999999999999988877 44433 2344455677888888876
No 467
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.63 E-value=0.044 Score=45.77 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=33.4
Q ss_pred eEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.| .|.+|..++..|.+.|++|.+.+|++++.+.+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 577887 599999999999999999999999987765543
No 468
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.60 E-value=0.022 Score=50.06 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=52.8
Q ss_pred CeEEEEec-ChhhHHHHHHHH-hCCCc---EEEEcC--CcchhHHHHHCCCcccCC-HHHHHhhCCEEEEecCCHHHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLL-RNGFK---VTVWNR--TLSKCDELVAHGATVGGS-PAEVIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~-~~g~~---V~~~~r--~~~~~~~l~~~g~~~~~~-~~~~~~~~dvvii~vp~~~~~~~ 72 (291)
|||+|+|+ |.+|..|...|. +..++ +.++.. +..+.-.+......+.+- ..+...+.|++|.|.+. ...++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~-~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGG-DYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCH-HHHHH
Confidence 68999998 999999999999 66665 333332 211211121112222211 11245689999999955 44444
Q ss_pred HHhccCccccccCCC--cEEEEcCCC
Q 022834 73 VVFDKGGVLEQICPG--KGYIDMSTV 96 (291)
Q Consensus 73 v~~~~~~l~~~l~~~--~~vv~~s~~ 96 (291)
+. .. ....| ..|||.|+.
T Consensus 80 ~~---p~---~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 80 IY---PK---LRESGWQGYWIDAASS 99 (366)
T ss_pred HH---HH---HHhCCCCeEEEECChh
Confidence 44 22 23466 678988764
No 469
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.60 E-value=0.21 Score=42.24 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=62.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEE--cCCc--chhHHHHHCCCcc------cCCHHHHHhh-CC-EEEEecCCHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVW--NRTL--SKCDELVAHGATV------GGSPAEVIKK-CT-ITIGMLADPA 68 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~--~r~~--~~~~~l~~~g~~~------~~~~~~~~~~-~d-vvii~vp~~~ 68 (291)
||.|.|+ |+||...+..+.+.++++... ++.. +....+...++++ ..+++++... +| ++|=.+ .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 7899998 999999999988888887653 3321 1222233235555 5677777766 88 555555 666
Q ss_pred HHHHHHhccCccccccCCCcEEEEcCCCC-HHHHHHHHHHHHhcCCcEEEcc
Q 022834 69 AALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEAP 119 (291)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
.+.+.+ +.+ +..+..+|.-+|+. ....+++. ....+..+-+|
T Consensus 81 ~~~~n~---~~~---~~~gv~~ViGTTG~~~~~~~~l~---~~~~i~~l~ap 123 (275)
T TIGR02130 81 AVNDNA---AFY---GKHGIPFVMGTTGGDREALAKLV---ADAKHPAVIAP 123 (275)
T ss_pred HHHHHH---HHH---HHCCCCEEEcCCCCCHHHHHHHH---HhcCCCEEEEC
Confidence 666665 222 33445555555553 44333332 22234444444
No 470
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.044 Score=45.38 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
++.|.|. |.+|..++..|.++|++|++.+|++++.+.+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4667764 9999999999999999999999988765544
No 471
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.59 E-value=0.096 Score=43.78 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++-|+|+|..+.+++......||+|+++|.+++
T Consensus 102 ~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 102 HVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred EEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 688999999999999999999999999987655
No 472
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.023 Score=49.03 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.6
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 38 (291)
|+|.|.| +|-+|+.++..|.++||+|.+.+|.......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 6789999 5999999999999999999999998766543
No 473
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.054 Score=45.44 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=33.8
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+++.|+|+ |.+|..++..|+++|++|++.+|+++..+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA 52 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888866 99999999999999999999999877665543
No 474
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.54 E-value=0.014 Score=51.99 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=30.4
Q ss_pred CeEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCc
Q 022834 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL 33 (291)
Q Consensus 1 mkI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~ 33 (291)
|||.|.|. |.+|..++..|.+.||+|++.+|..
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 78999987 9999999999999999999999854
No 475
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.068 Score=45.23 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=33.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|.|+ |.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5677776 99999999999999999999999988776543
No 476
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.51 E-value=0.016 Score=52.28 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=31.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
++|.|||+|..|.++|..|+++|++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3799999999999999999999999999998754
No 477
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.091 Score=43.96 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=33.2
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
+|.|+|+ |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5778877 99999999999999999999999877655443
No 478
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.50 E-value=0.11 Score=45.48 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=37.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCCc-EEEEcCCcchhHHHHHCCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~ 44 (291)
+|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|+
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 688999999999999988889988 9999999888877766664
No 479
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.50 E-value=0.016 Score=49.66 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=38.0
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEec
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGML 64 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~v 64 (291)
|||.|+| .|.+|.++...|.+.|++|..++|+.-. +.-.....+.++ ++|+||-|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--------l~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--------LTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--------CCCHHHHHHHHHHhCCCeEeccc
Confidence 9999999 5999999999999999999999876211 111112233333 479999886
No 480
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.50 E-value=0.089 Score=46.25 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=43.1
Q ss_pred eEEEEecChhhHHHHHHHHh-C-CCcEEEEcCCcchhHHHHHCCCcccCCHHHHHh--hCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLR-N-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~-~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvvii~vp 65 (291)
++.|+|+|.+|...+..+.+ . +.+|++.++++++.+.+...+... ...+..+ ..|+||-|+.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G 231 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVG 231 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCC
Confidence 58899999999998887775 4 367999999988887765534321 1112222 3688888886
No 481
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.078 Score=43.58 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=50.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHHHHhhCCEEEEecCCHHHHHHHHhccCcc
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvvii~vp~~~~~~~v~~~~~~l 80 (291)
+|.|.|. |.+|..++..|+++|++|++.+|++++.....+. .. ....+++..-+.+...++.++ +++
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~--~~~~~~~~~D~~~~~~~~~~~---~~~ 76 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-------VP--ADALRIGGIDLVDPQAARRAV---DEV 76 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-------Hh--hcCceEEEeecCCHHHHHHHH---HHH
Confidence 5778865 9999999999999999999999987665433211 00 012334444444555666665 444
Q ss_pred ccccCCCcEEEEcCC
Q 022834 81 LEQICPGKGYIDMST 95 (291)
Q Consensus 81 ~~~l~~~~~vv~~s~ 95 (291)
.....+-+.|++...
T Consensus 77 ~~~~~~~d~vi~~ag 91 (239)
T PRK12828 77 NRQFGRLDALVNIAG 91 (239)
T ss_pred HHHhCCcCEEEECCc
Confidence 333333355665443
No 482
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.48 E-value=0.065 Score=44.82 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=32.0
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|++.|++|++++|++++.+.+
T Consensus 13 ~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~ 51 (256)
T PRK06124 13 VALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAA 51 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 5667765 9999999999999999999999987765544
No 483
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=95.46 E-value=0.039 Score=45.90 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=44.7
Q ss_pred eEEEEecChhhHHHHHHHHhCCC--cEEEEcCCcchhHHH-HH--CCC------cccCC-HHHHHhhCCEEEEecC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL-VA--HGA------TVGGS-PAEVIKKCTITIGMLA 65 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l-~~--~g~------~~~~~-~~~~~~~~dvvii~vp 65 (291)
||.|+|.|.+|.+.+..+..+|. ++.+.|.++++++-- -+ .|. +++.+ ......+++++|+...
T Consensus 22 KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 22 KITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAG 97 (332)
T ss_pred eEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecC
Confidence 89999999999999999988874 799999998876521 11 121 11111 2234467899988874
No 484
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.45 E-value=0.1 Score=45.92 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=36.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCC
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~ 44 (291)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 5889999999999999988899999999999888877765554
No 485
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.45 E-value=0.077 Score=46.41 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=49.3
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHCCCcccCCHHH-HHhhCCEEEEecCCHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAE-VIKKCTITIGMLADPAAALS 72 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~-~~~~~dvvii~vp~~~~~~~ 72 (291)
++.|.|+|.+|...+......|.+|+..++++++.+.+.+.|+...-+..+ ..+..|+++.+++.+..+..
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~ 239 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPP 239 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHH
Confidence 578999999998888777778888988999999988888878653322111 11245777777655443333
No 486
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.45 E-value=0.056 Score=45.50 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=32.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5667765 68999999999999999999999887665543
No 487
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.44 E-value=0.088 Score=44.53 Aligned_cols=93 Identities=23% Similarity=0.245 Sum_probs=59.2
Q ss_pred eEEEEecChhhHHHHHHHHhC----CC-------cEEEEcCCc----c--hhH----HHHHCCC-cccCCHHHHHh--hC
Q 022834 2 EVGFLGLGIMGKAISMNLLRN----GF-------KVTVWNRTL----S--KCD----ELVAHGA-TVGGSPAEVIK--KC 57 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~----g~-------~V~~~~r~~----~--~~~----~l~~~g~-~~~~~~~~~~~--~~ 57 (291)
||.|+|+|.-|..++..|... |. +++++|+.- + .+. .+....- ....++.|+++ ++
T Consensus 27 ~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~p 106 (279)
T cd05312 27 RILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKP 106 (279)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCC
Confidence 799999999999999999875 75 688888751 0 011 1222111 13457888888 77
Q ss_pred CEEEEecC-CHHHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 58 TITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 58 dvvii~vp-~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
|++|=+.. ...-.++++ +.+..+. +..+|.-+||-.|
T Consensus 107 tvlIG~S~~~g~ft~evv---~~Ma~~~-~~PIIFaLSNPt~ 144 (279)
T cd05312 107 TVLIGLSGVGGAFTEEVV---RAMAKSN-ERPIIFALSNPTS 144 (279)
T ss_pred CEEEEeCCCCCCCCHHHH---HHHHhcC-CCCEEEECCCcCC
Confidence 87776552 122344555 4444443 6678888888765
No 488
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.057 Score=45.14 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.6
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|+ |.+|.+++..|++.|++|.+.+|++++.+.+.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3556676 89999999999999999999999887766543
No 489
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.062 Score=47.10 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|+ |.+|.+++..|++.|++|++.+|++++.+.+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4666676 89999999999999999999999988776543
No 490
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.41 E-value=0.058 Score=45.18 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=32.8
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
++.|.|+ |.+|..++..|+++|++|.+.+|+++..+.+.
T Consensus 9 ~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 9 TAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVA 48 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 4667766 99999999999999999999999887665543
No 491
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.055 Score=45.37 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=33.5
Q ss_pred CeEEEEe-cChhhHHHHHHHHhCCCcEEEEcCCcchhHHHH
Q 022834 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (291)
Q Consensus 1 mkI~iIG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 40 (291)
|+|.|.| .|.+|..++..|+++|++|++.+|++++.+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA 43 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3566776 699999999999999999999999987766544
No 492
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=95.39 E-value=0.072 Score=48.11 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=29.5
Q ss_pred eEEEEecChhhHHHHHHHHhCCC------cEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF------KVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~------~V~~~~r~~~ 34 (291)
||.|||+|.+|+.++..|+..|. +++++|.+.-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 68999999999999999999997 7999987643
No 493
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.18 Score=46.33 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=64.4
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhHHHHHC-CCc-ccCCHHHHHhhCCEEEEec--C-CHHHHHHHHhc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT-VGGSPAEVIKKCTITIGML--A-DPAAALSVVFD 76 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~~~dvvii~v--p-~~~~~~~v~~~ 76 (291)
||+|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+. ... ......+.+.++|+||+.- | +...+......
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~~ 86 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKNF 86 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHHC
Confidence 79999999999999999995 99999999654433322221 111 1122234456789887652 1 21222222100
Q ss_pred ------cCccc-cccCC-CcEEEEcCCCCHHHHHHHHHHHHhcCCcEE
Q 022834 77 ------KGGVL-EQICP-GKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (291)
Q Consensus 77 ------~~~l~-~~l~~-~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
+-++. ....+ ..+-|.-|++...+..-+.+.+...|....
T Consensus 87 gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~ 134 (454)
T PRK01368 87 NIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYP 134 (454)
T ss_pred CCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeE
Confidence 00111 11212 234455566777777777788877665443
No 494
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=95.39 E-value=0.11 Score=46.89 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=65.1
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-cEEEEcCCcchhHHHHHC--------CCcccCCHHHHHh--hCCEEEEecCCHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~--~~dvvii~vp~~~~~ 70 (291)
+|+|||+|.+|+.++.+|...|. .++++|.+.-....+... |...+....+.+. +.|+-+.+... ..
T Consensus 22 ~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e--~~ 99 (425)
T cd01493 22 HVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE--SP 99 (425)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec--cc
Confidence 79999999999999999999996 699998653222222211 1111111111121 46766655532 12
Q ss_pred HHHHhccCccccccCCCcEEEEcCCCCHHHHHHHHHHHHhcCCcEEEcccCC
Q 022834 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (291)
Q Consensus 71 ~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
++++ ......+.+-++||. +.........+.+.+.+.++.++.+...|
T Consensus 100 ~~ll---~~~~~f~~~fdiVI~-t~~~~~~~~~L~~~c~~~~iPlI~~~s~G 147 (425)
T cd01493 100 EALL---DNDPSFFSQFTVVIA-TNLPESTLLRLADVLWSANIPLLYVRSYG 147 (425)
T ss_pred chhh---hhHHHHhcCCCEEEE-CCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 2222 111122334456664 44455566667777777788777655443
No 495
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.37 E-value=0.14 Score=42.68 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=57.9
Q ss_pred eEEEEecChhhHHHHHHHHhCCC-----------cEEEEcCCc-------c--hh-HHH--HHCCCcccCCHHHHHh--h
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGF-----------KVTVWNRTL-------S--KC-DEL--VAHGATVGGSPAEVIK--K 56 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~-----------~V~~~~r~~-------~--~~-~~l--~~~g~~~~~~~~~~~~--~ 56 (291)
||.|+|+|.-|..++..|...+. +++++|+.- + .. +.+ ....-....++.|+++ +
T Consensus 27 riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~k 106 (254)
T cd00762 27 KVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAK 106 (254)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhC
Confidence 79999999999999999987542 677777641 1 11 111 0111123458888888 7
Q ss_pred CCEEEEecC-CHHHHHHHHhccCccccccCCCcEEEEcCCCCH
Q 022834 57 CTITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH 98 (291)
Q Consensus 57 ~dvvii~vp-~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~ 98 (291)
+|++|=... ...-.++++ +.+..+. +..+|.-+||-.|
T Consensus 107 ptvlIG~S~~~g~ft~evv---~~Ma~~~-~~PIIFaLSNPt~ 145 (254)
T cd00762 107 PDFLIGVSRVGGAFTPEVI---RAXAEIN-ERPVIFALSNPTS 145 (254)
T ss_pred CCEEEEeCCCCCCCCHHHH---HHHhhcC-CCCEEEECCCcCC
Confidence 887765542 222344555 4444443 6678888888765
No 496
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.36 E-value=0.33 Score=44.75 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=64.6
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc-hh---HHHHHCCCccc-CCHHHHHhhCCEEEEec--C-CHHHHHHH
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KC---DELVAHGATVG-GSPAEVIKKCTITIGML--A-DPAAALSV 73 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~---~~l~~~g~~~~-~~~~~~~~~~dvvii~v--p-~~~~~~~v 73 (291)
||+|+|+|.-|.+.++.|.+.|.+|+++|.++. .. ..+.+.+.... ....+.+.++|+||..- | +...+...
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~~~~a 89 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPEALAA 89 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHHHHHH
Confidence 799999999999999999999999999995432 22 23433322221 12234456789888763 2 21222222
Q ss_pred Hhc-c---C--cc-ccc-cC-----CCcEEEEcCCCCHHHHHHHHHHHHhcCC
Q 022834 74 VFD-K---G--GV-LEQ-IC-----PGKGYIDMSTVDHETSIKISRAITSKGG 113 (291)
Q Consensus 74 ~~~-~---~--~l-~~~-l~-----~~~~vv~~s~~~~~~~~~~~~~~~~~~~ 113 (291)
... . . ++ ... .. ...+-|.-|++...+..-+.+.+...+.
T Consensus 90 ~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 142 (468)
T PRK04690 90 AARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGH 142 (468)
T ss_pred HHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 100 0 0 11 111 11 1234455556677777777777776653
No 497
>PRK06847 hypothetical protein; Provisional
Probab=95.34 E-value=0.023 Score=50.58 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=31.0
Q ss_pred eEEEEecChhhHHHHHHHHhCCCcEEEEcCCcc
Q 022834 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (291)
Q Consensus 2 kI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~ 34 (291)
+|.|||+|.-|..+|..|++.|++|++++++++
T Consensus 6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 799999999999999999999999999998754
No 498
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.31 E-value=0.059 Score=44.78 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.1
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|+|+ |.+|..++..|++.|++|++.+|++++.+.+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV 45 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6788875 9999999999999999999999998766554
No 499
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.31 E-value=0.071 Score=44.56 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=32.3
Q ss_pred eEEEEec-ChhhHHHHHHHHhCCCcEEEEcCCcchhHHH
Q 022834 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (291)
Q Consensus 2 kI~iIG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 39 (291)
+|.|.|+ |.+|..++..|++.|++|.+.+|++++.+.+
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAA 50 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5777775 9999999999999999999999987765543
No 500
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.29 E-value=0.048 Score=48.65 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=43.3
Q ss_pred CeEEEEecChhhHHHHHHHHhCCCcEEEEcCCcchhH-HHHHCCCc-ccCC---HHHHHhhCCEEEE
Q 022834 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGAT-VGGS---PAEVIKKCTITIG 62 (291)
Q Consensus 1 mkI~iIG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~-~l~~~g~~-~~~~---~~~~~~~~dvvii 62 (291)
|+|+|||.|..|..++....+.|++|.++|.+++... .+.+.-+. ..++ ..++++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4699999999999999999999999999998765432 22222111 1223 3456678897644
Done!