Query 022835
Match_columns 291
No_of_seqs 180 out of 2531
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 1.6E-43 3.4E-48 298.4 33.6 284 2-289 3-286 (286)
2 TIGR03211 catechol_2_3 catecho 100.0 3E-32 6.5E-37 232.3 27.9 241 21-283 2-267 (303)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.7E-31 3.7E-36 226.8 28.7 238 20-283 1-258 (294)
4 TIGR03213 23dbph12diox 2,3-dih 100.0 9E-31 2E-35 221.3 26.9 237 21-282 1-264 (286)
5 KOG2943 Predicted glyoxalase [ 100.0 3.9E-30 8.4E-35 198.0 20.2 258 13-289 7-278 (299)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 1.4E-22 2.9E-27 175.7 22.3 223 22-256 1-268 (353)
7 PLN02875 4-hydroxyphenylpyruva 99.9 9.8E-21 2.1E-25 162.7 21.7 224 24-255 1-295 (398)
8 COG2514 Predicted ring-cleavag 99.9 2.1E-19 4.6E-24 143.0 21.2 194 19-232 6-242 (265)
9 TIGR00068 glyox_I lactoylgluta 99.9 1.2E-19 2.6E-24 138.7 18.2 135 15-149 9-143 (150)
10 PLN02367 lactoylglutathione ly 99.8 4.9E-20 1.1E-24 146.5 13.8 131 151-287 73-228 (233)
11 PRK10291 glyoxalase I; Provisi 99.8 4.1E-19 8.8E-24 132.3 16.9 124 28-151 1-124 (129)
12 TIGR00068 glyox_I lactoylgluta 99.8 1.7E-19 3.8E-24 137.8 14.5 137 148-288 12-148 (150)
13 PLN02367 lactoylglutathione ly 99.8 9.7E-19 2.1E-23 139.2 17.8 128 20-149 72-224 (233)
14 PRK10291 glyoxalase I; Provisi 99.8 3E-19 6.4E-24 133.0 13.1 123 158-284 1-123 (129)
15 PLN03042 Lactoylglutathione ly 99.8 5.6E-18 1.2E-22 132.3 19.3 127 20-148 24-175 (185)
16 PRK11478 putative lyase; Provi 99.8 2.5E-18 5.4E-23 128.0 15.7 124 19-147 2-129 (129)
17 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3E-18 6.6E-23 129.7 16.2 123 21-147 1-141 (142)
18 PLN03042 Lactoylglutathione ly 99.8 1.2E-18 2.7E-23 136.0 13.4 129 151-285 25-178 (185)
19 cd07233 Glyoxalase_I Glyoxalas 99.8 6.1E-18 1.3E-22 124.3 14.0 120 154-279 1-121 (121)
20 cd07233 Glyoxalase_I Glyoxalas 99.8 1.6E-17 3.6E-22 122.0 16.3 120 24-145 1-121 (121)
21 cd07257 THT_oxygenase_C The C- 99.8 2.1E-18 4.6E-23 132.0 11.0 123 153-286 1-130 (153)
22 cd08342 HPPD_N_like N-terminal 99.8 1.8E-17 3.9E-22 124.4 15.9 120 24-150 1-126 (136)
23 KOG0638 4-hydroxyphenylpyruvat 99.8 1.5E-18 3.4E-23 139.6 10.4 255 19-281 13-337 (381)
24 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 1.7E-17 3.7E-22 122.4 15.3 124 21-146 1-125 (125)
25 cd08360 MhqB_like_C C-terminal 99.8 9.2E-18 2E-22 125.8 13.4 125 151-286 1-125 (134)
26 cd08342 HPPD_N_like N-terminal 99.8 9.8E-18 2.1E-22 125.9 13.2 120 154-284 1-126 (136)
27 cd08358 Glo_EDI_BRP_like_21 Th 99.8 4.7E-17 1E-21 119.2 16.3 115 22-146 1-126 (127)
28 PLN02300 lactoylglutathione ly 99.8 1.1E-17 2.3E-22 141.3 14.4 131 149-283 20-150 (286)
29 cd07243 2_3_CTD_C C-terminal d 99.8 1.8E-17 3.9E-22 125.4 14.1 121 151-281 4-125 (143)
30 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.1E-17 4.6E-22 122.1 14.2 119 23-145 1-125 (125)
31 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.2E-17 2.5E-22 126.5 12.9 122 152-281 2-141 (142)
32 PRK04101 fosfomycin resistance 99.8 6.4E-17 1.4E-21 121.9 16.1 118 20-148 1-120 (139)
33 TIGR03645 glyox_marine lactoyl 99.8 8E-17 1.7E-21 124.4 16.6 127 21-150 2-154 (162)
34 cd08358 Glo_EDI_BRP_like_21 Th 99.7 4.3E-17 9.4E-22 119.4 13.5 114 153-280 2-126 (127)
35 cd07257 THT_oxygenase_C The C- 99.7 4.2E-17 9E-22 124.9 13.8 119 23-148 1-126 (153)
36 cd07243 2_3_CTD_C C-terminal d 99.7 1.5E-16 3.3E-21 120.3 16.2 119 20-147 3-125 (143)
37 PRK11478 putative lyase; Provi 99.7 4.9E-17 1.1E-21 121.0 13.2 120 152-280 5-128 (129)
38 TIGR03645 glyox_marine lactoyl 99.7 4.3E-17 9.2E-22 125.9 13.2 126 151-283 2-153 (162)
39 cd07265 2_3_CTD_N N-terminal d 99.7 1.4E-16 2.9E-21 117.4 15.3 116 21-148 2-120 (122)
40 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 7.2E-17 1.6E-21 119.2 12.7 119 153-279 1-125 (125)
41 cd08360 MhqB_like_C C-terminal 99.7 2.6E-16 5.7E-21 117.8 15.8 117 22-148 2-121 (134)
42 COG3185 4-hydroxyphenylpyruvat 99.7 4.7E-16 1E-20 128.0 17.9 224 19-257 18-276 (363)
43 TIGR03081 metmalonyl_epim meth 99.7 3.9E-17 8.5E-22 121.2 10.7 119 23-146 1-128 (128)
44 cd07265 2_3_CTD_N N-terminal d 99.7 8.2E-17 1.8E-21 118.6 12.3 117 151-283 2-121 (122)
45 cd07258 PpCmtC_C C-terminal do 99.7 8.8E-17 1.9E-21 121.1 12.5 119 155-286 1-119 (141)
46 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 1.5E-16 3.3E-21 117.3 13.5 120 152-280 2-125 (125)
47 cd07256 HPCD_C_class_II C-term 99.7 1.6E-16 3.4E-21 122.7 14.0 122 151-282 1-124 (161)
48 cd07237 BphC1-RGP6_C_like C-te 99.7 1.3E-16 2.8E-21 122.3 13.4 124 150-285 6-135 (154)
49 cd09014 BphC-JF8_C_like C-term 99.7 5.2E-16 1.1E-20 120.3 16.5 124 19-148 2-128 (166)
50 cd07237 BphC1-RGP6_C_like C-te 99.7 5.2E-16 1.1E-20 118.9 15.8 123 19-149 5-133 (154)
51 PF00903 Glyoxalase: Glyoxalas 99.7 7.8E-17 1.7E-21 119.3 10.6 120 23-144 1-128 (128)
52 cd09011 Glo_EDI_BRP_like_23 Th 99.7 4.4E-16 9.5E-21 114.3 13.8 114 22-147 1-119 (120)
53 TIGR03081 metmalonyl_epim meth 99.7 2.3E-16 4.9E-21 117.1 12.2 119 153-280 1-128 (128)
54 cd07247 SgaA_N_like N-terminal 99.7 4E-16 8.7E-21 113.4 13.2 114 154-280 1-114 (114)
55 cd08343 ED_TypeI_classII_C C-t 99.7 1.2E-15 2.6E-20 113.8 15.4 116 25-149 1-119 (131)
56 cd07263 Glo_EDI_BRP_like_16 Th 99.7 9.2E-16 2E-20 112.1 14.1 117 26-146 1-119 (119)
57 cd07247 SgaA_N_like N-terminal 99.7 1.3E-15 2.9E-20 110.6 14.7 114 24-146 1-114 (114)
58 cd09013 BphC-JF8_N_like N-term 99.7 1.6E-15 3.5E-20 111.5 14.9 115 19-148 2-119 (121)
59 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 9.8E-16 2.1E-20 113.0 13.7 118 21-146 1-124 (125)
60 cd08355 Glo_EDI_BRP_like_14 Th 99.7 2.3E-15 5E-20 110.8 15.4 117 27-146 3-121 (122)
61 cd08363 FosB FosB, a fosfomyci 99.7 9E-16 2E-20 114.4 13.3 114 24-148 1-116 (131)
62 cd08364 FosX FosX, a fosfomyci 99.7 2.3E-15 5E-20 112.2 15.5 120 20-148 1-123 (131)
63 cd08361 PpCmtC_N N-terminal do 99.7 9.2E-16 2E-20 113.3 13.2 114 20-149 3-121 (124)
64 cd08347 PcpA_C_like C-terminal 99.7 5.1E-16 1.1E-20 119.1 12.0 117 153-282 1-121 (157)
65 cd07264 Glo_EDI_BRP_like_15 Th 99.7 2E-15 4.3E-20 111.5 14.8 117 24-147 1-125 (125)
66 PRK04101 fosfomycin resistance 99.7 1.1E-15 2.3E-20 115.3 13.3 116 152-282 3-120 (139)
67 cd07239 BphC5-RK37_C_like C-te 99.7 1E-15 2.2E-20 115.9 13.0 118 152-284 3-120 (144)
68 cd07263 Glo_EDI_BRP_like_16 Th 99.7 9.7E-16 2.1E-20 112.0 12.5 117 156-280 1-119 (119)
69 cd08343 ED_TypeI_classII_C C-t 99.7 1.5E-15 3.2E-20 113.3 13.5 118 155-285 1-121 (131)
70 cd07256 HPCD_C_class_II C-term 99.7 3.8E-15 8.3E-20 115.0 16.0 118 22-148 2-124 (161)
71 cd07266 HPCD_N_class_II N-term 99.7 2E-15 4.2E-20 111.0 13.8 116 20-148 1-119 (121)
72 cd09013 BphC-JF8_N_like N-term 99.7 1.5E-15 3.2E-20 111.7 12.5 113 151-282 4-119 (121)
73 cd08346 PcpA_N_like N-terminal 99.7 2.8E-15 6E-20 110.8 14.0 120 23-145 1-126 (126)
74 cd08363 FosB FosB, a fosfomyci 99.7 1.2E-15 2.6E-20 113.7 12.2 115 154-283 1-117 (131)
75 cd09014 BphC-JF8_C_like C-term 99.7 2.3E-15 4.9E-20 116.8 14.0 121 151-281 4-127 (166)
76 PRK06724 hypothetical protein; 99.7 3.8E-15 8.3E-20 110.2 14.6 113 19-148 3-124 (128)
77 cd07255 Glo_EDI_BRP_like_12 Th 99.7 6.4E-15 1.4E-19 108.8 15.7 117 22-149 1-121 (125)
78 PF00903 Glyoxalase: Glyoxalas 99.7 4E-16 8.6E-21 115.5 9.1 120 153-278 1-128 (128)
79 cd08351 ChaP_like ChaP, an enz 99.7 5.5E-15 1.2E-19 109.0 14.8 112 20-147 1-121 (123)
80 cd07239 BphC5-RK37_C_like C-te 99.7 4.8E-15 1E-19 112.2 14.8 114 22-149 3-119 (144)
81 cd08347 PcpA_C_like C-terminal 99.7 5.2E-15 1.1E-19 113.5 15.1 117 23-148 1-121 (157)
82 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.6E-15 3.4E-20 111.4 11.8 113 153-281 2-119 (120)
83 cd07240 ED_TypeI_classII_N N-t 99.7 5E-15 1.1E-19 108.0 14.4 112 22-148 1-115 (117)
84 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 1.7E-15 3.6E-20 109.6 11.8 113 24-144 1-114 (114)
85 cd08355 Glo_EDI_BRP_like_14 Th 99.7 5E-15 1.1E-19 109.0 14.3 117 156-281 2-122 (122)
86 cd08359 Glo_EDI_BRP_like_22 Th 99.7 5E-15 1.1E-19 108.4 14.2 111 26-146 4-119 (119)
87 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 7E-15 1.5E-19 108.1 14.8 115 27-146 5-121 (122)
88 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 3.2E-15 6.9E-20 110.2 12.9 118 152-281 2-125 (125)
89 PRK06724 hypothetical protein; 99.7 2.4E-15 5.1E-20 111.3 12.1 111 152-282 6-124 (128)
90 cd07249 MMCE Methylmalonyl-CoA 99.7 4.8E-15 1E-19 109.8 13.7 118 24-146 1-128 (128)
91 cd07252 BphC1-RGP6_N_like N-te 99.7 4.9E-15 1.1E-19 108.7 13.5 113 22-148 1-118 (120)
92 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.2E-14 2.5E-19 107.9 15.7 117 23-147 1-128 (128)
93 cd07267 THT_Oxygenase_N N-term 99.6 1.1E-14 2.3E-19 105.7 15.0 111 21-148 1-111 (113)
94 cd08364 FosX FosX, a fosfomyci 99.6 4.5E-15 9.8E-20 110.6 13.4 117 152-282 3-123 (131)
95 cd07266 HPCD_N_class_II N-term 99.6 2E-15 4.4E-20 110.9 11.3 114 152-282 3-119 (121)
96 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 5.8E-15 1.3E-19 109.5 13.6 117 153-281 1-128 (128)
97 cd07258 PpCmtC_C C-terminal do 99.6 8.9E-15 1.9E-19 110.2 14.6 114 25-150 1-117 (141)
98 cd08346 PcpA_N_like N-terminal 99.6 3.6E-15 7.9E-20 110.1 12.4 120 153-279 1-126 (126)
99 cd08362 BphC5-RrK37_N_like N-t 99.6 1.1E-14 2.5E-19 106.7 14.6 113 21-148 1-118 (120)
100 cd07249 MMCE Methylmalonyl-CoA 99.6 4.5E-15 9.8E-20 110.0 12.5 118 154-280 1-128 (128)
101 cd07264 Glo_EDI_BRP_like_15 Th 99.6 5.9E-15 1.3E-19 109.0 12.9 115 154-281 1-125 (125)
102 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 2.9E-15 6.3E-20 108.3 10.9 113 154-278 1-114 (114)
103 cd08351 ChaP_like ChaP, an enz 99.6 5.3E-15 1.2E-19 109.0 12.3 112 152-282 3-122 (123)
104 cd07252 BphC1-RGP6_N_like N-te 99.6 3.9E-15 8.5E-20 109.3 11.2 112 153-282 2-118 (120)
105 cd07255 Glo_EDI_BRP_like_12 Th 99.6 9.3E-15 2E-19 108.0 13.0 116 153-283 2-121 (125)
106 PF12681 Glyoxalase_2: Glyoxal 99.6 1E-14 2.2E-19 104.9 12.5 108 29-145 1-108 (108)
107 cd08361 PpCmtC_N N-terminal do 99.6 4.1E-15 8.8E-20 109.8 10.7 111 152-282 5-120 (124)
108 cd08348 BphC2-C3-RGP6_C_like T 99.6 3.7E-14 8.1E-19 106.1 15.9 120 23-150 1-123 (134)
109 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 2E-14 4.4E-19 105.5 14.0 116 157-281 5-122 (122)
110 cd08348 BphC2-C3-RGP6_C_like T 99.6 1.7E-14 3.7E-19 108.0 13.5 122 153-283 1-122 (134)
111 TIGR03211 catechol_2_3 catecho 99.6 4.2E-14 9.2E-19 120.7 16.5 120 19-147 141-265 (303)
112 cd08359 Glo_EDI_BRP_like_22 Th 99.6 2.4E-14 5.2E-19 104.8 12.9 113 155-280 3-119 (119)
113 COG3324 Predicted enzyme relat 99.6 2.5E-14 5.5E-19 102.9 12.2 120 151-282 7-126 (127)
114 cd07240 ED_TypeI_classII_N N-t 99.6 2.1E-14 4.5E-19 104.7 12.1 111 153-282 2-115 (117)
115 cd08354 Glo_EDI_BRP_like_13 Th 99.6 4.8E-14 1E-18 103.6 14.0 114 24-147 1-122 (122)
116 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 7.2E-14 1.6E-18 101.2 14.6 108 27-147 4-111 (112)
117 cd08345 Fosfomycin_RP Fosfomyc 99.6 3.4E-14 7.3E-19 103.0 12.9 109 26-147 1-111 (113)
118 cd07262 Glo_EDI_BRP_like_19 Th 99.6 5.4E-14 1.2E-18 103.6 14.1 114 24-145 1-122 (123)
119 cd07267 THT_Oxygenase_N N-term 99.6 3.3E-14 7.2E-19 103.2 12.6 109 152-281 2-110 (113)
120 cd08345 Fosfomycin_RP Fosfomyc 99.6 2.2E-14 4.8E-19 104.0 11.6 109 156-281 1-111 (113)
121 PF12681 Glyoxalase_2: Glyoxal 99.6 1.5E-14 3.3E-19 103.9 10.6 108 159-279 1-108 (108)
122 cd08362 BphC5-RrK37_N_like N-t 99.6 2.5E-14 5.5E-19 104.8 11.8 113 152-282 2-118 (120)
123 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 3.6E-14 7.8E-19 102.8 12.3 109 156-281 3-111 (112)
124 cd08349 BLMA_like Bleomycin bi 99.6 9.1E-14 2E-18 100.4 14.5 109 28-146 3-112 (112)
125 cd07244 FosA FosA, a Fosfomyci 99.6 4.5E-14 9.9E-19 103.7 12.9 109 23-148 1-111 (121)
126 cd07235 MRD Mitomycin C resist 99.6 5.4E-14 1.2E-18 103.4 13.4 113 24-145 1-121 (122)
127 cd08349 BLMA_like Bleomycin bi 99.6 4.1E-14 8.9E-19 102.3 12.5 109 158-280 3-112 (112)
128 cd07261 Glo_EDI_BRP_like_11 Th 99.6 4E-14 8.8E-19 102.8 11.6 109 157-280 2-114 (114)
129 cd07262 Glo_EDI_BRP_like_19 Th 99.6 5.9E-14 1.3E-18 103.4 12.6 114 154-279 1-122 (123)
130 cd08354 Glo_EDI_BRP_like_13 Th 99.6 4.8E-14 1E-18 103.6 12.0 114 154-281 1-122 (122)
131 cd07244 FosA FosA, a Fosfomyci 99.6 5.8E-14 1.2E-18 103.2 12.1 110 153-283 1-112 (121)
132 cd08344 MhqB_like_N N-terminal 99.6 1.1E-13 2.4E-18 100.2 13.4 108 22-148 1-110 (112)
133 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.4E-13 3E-18 117.0 16.1 121 19-148 132-257 (294)
134 cd08357 Glo_EDI_BRP_like_18 Th 99.6 7.4E-14 1.6E-18 103.0 12.6 113 26-146 2-124 (125)
135 cd06587 Glo_EDI_BRP_like This 99.6 1.6E-13 3.4E-18 98.5 13.8 112 26-144 1-112 (112)
136 cd09012 Glo_EDI_BRP_like_24 Th 99.6 5.6E-14 1.2E-18 103.7 11.6 112 154-279 1-122 (124)
137 cd08350 BLMT_like BLMT, a bleo 99.6 1.4E-13 3E-18 101.0 13.6 108 26-147 5-119 (120)
138 cd09012 Glo_EDI_BRP_like_24 Th 99.6 8E-14 1.7E-18 102.9 12.0 113 24-146 1-123 (124)
139 cd07254 Glo_EDI_BRP_like_20 Th 99.6 8.5E-14 1.8E-18 102.1 12.0 112 155-282 3-118 (120)
140 cd07254 Glo_EDI_BRP_like_20 Th 99.6 2.1E-13 4.6E-18 100.0 14.1 112 25-148 3-118 (120)
141 TIGR03213 23dbph12diox 2,3-dih 99.5 2.1E-13 4.5E-18 115.4 15.2 120 20-148 139-264 (286)
142 cd08344 MhqB_like_N N-terminal 99.5 1.2E-13 2.5E-18 100.1 11.7 107 153-282 2-110 (112)
143 cd07261 Glo_EDI_BRP_like_11 Th 99.5 2.4E-13 5.1E-18 98.7 13.3 108 27-145 2-113 (114)
144 cd06587 Glo_EDI_BRP_like This 99.5 1.1E-13 2.4E-18 99.3 11.3 112 156-278 1-112 (112)
145 cd07235 MRD Mitomycin C resist 99.5 1.1E-13 2.4E-18 101.8 11.4 113 154-279 1-121 (122)
146 cd08350 BLMT_like BLMT, a bleo 99.5 1.6E-13 3.6E-18 100.6 12.0 108 156-281 5-119 (120)
147 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1.1E-13 2.3E-18 102.2 10.7 114 155-280 1-124 (125)
148 PF13669 Glyoxalase_4: Glyoxal 99.5 1.7E-13 3.7E-18 98.7 11.2 95 25-121 1-97 (109)
149 COG3324 Predicted enzyme relat 99.5 1.5E-12 3.3E-17 93.7 14.8 122 19-148 5-126 (127)
150 cd07251 Glo_EDI_BRP_like_10 Th 99.5 8.3E-13 1.8E-17 96.8 12.0 110 27-146 2-120 (121)
151 cd07251 Glo_EDI_BRP_like_10 Th 99.5 1E-12 2.2E-17 96.3 11.4 110 157-280 2-120 (121)
152 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.2E-12 2.7E-17 94.8 11.4 104 27-146 5-113 (113)
153 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.4E-12 3E-17 94.6 11.3 105 156-280 4-113 (113)
154 PF13669 Glyoxalase_4: Glyoxal 99.4 5.8E-13 1.3E-17 95.9 8.8 96 155-256 1-98 (109)
155 KOG2943 Predicted glyoxalase [ 99.4 6.2E-13 1.3E-17 103.4 7.9 120 151-283 15-145 (299)
156 KOG2944 Glyoxalase [Carbohydra 99.4 1.9E-12 4E-17 94.5 9.3 142 2-147 2-168 (170)
157 COG2514 Predicted ring-cleavag 99.4 1.1E-11 2.4E-16 99.3 11.5 121 150-283 7-128 (265)
158 KOG2944 Glyoxalase [Carbohydra 99.3 1.1E-11 2.4E-16 90.5 9.9 119 153-282 42-169 (170)
159 cd07250 HPPD_C_like C-terminal 99.3 2.2E-11 4.7E-16 96.5 11.4 100 21-122 1-113 (191)
160 COG3565 Predicted dioxygenase 99.2 1.3E-10 2.8E-15 80.0 10.3 119 22-148 3-130 (138)
161 cd07250 HPPD_C_like C-terminal 99.2 8.4E-11 1.8E-15 93.1 9.4 99 152-256 2-113 (191)
162 COG3565 Predicted dioxygenase 99.1 8.2E-10 1.8E-14 76.1 10.1 119 153-283 4-131 (138)
163 TIGR01263 4HPPD 4-hydroxypheny 99.1 5.2E-10 1.1E-14 97.3 11.2 104 17-122 152-268 (353)
164 COG2764 PhnB Uncharacterized p 99.1 7.1E-09 1.5E-13 76.1 15.1 117 28-149 5-133 (136)
165 cd06588 PhnB_like Escherichia 99.1 5.4E-09 1.2E-13 77.4 14.3 110 28-144 4-127 (128)
166 PF13468 Glyoxalase_3: Glyoxal 99.1 3.7E-09 8E-14 82.7 12.7 147 24-175 1-175 (175)
167 COG3607 Predicted lactoylgluta 99.0 3.7E-09 8E-14 74.3 10.0 115 153-280 3-126 (133)
168 cd06588 PhnB_like Escherichia 99.0 7.7E-09 1.7E-13 76.6 12.3 114 158-279 4-128 (128)
169 COG0346 GloA Lactoylglutathion 99.0 3.9E-09 8.4E-14 78.0 8.5 122 22-146 1-138 (138)
170 COG3607 Predicted lactoylgluta 99.0 9.2E-09 2E-13 72.4 9.5 117 22-148 2-128 (133)
171 PF14696 Glyoxalase_5: Hydroxy 99.0 6.2E-09 1.3E-13 76.8 9.1 123 19-150 5-129 (139)
172 COG0346 GloA Lactoylglutathion 98.9 6.3E-09 1.4E-13 76.9 8.1 121 153-280 2-138 (138)
173 PLN02875 4-hydroxyphenylpyruva 98.9 5.2E-09 1.1E-13 90.7 8.6 101 19-121 176-295 (398)
174 COG2764 PhnB Uncharacterized p 98.9 5.7E-08 1.2E-12 71.4 12.5 115 159-282 6-132 (136)
175 PF14506 CppA_N: CppA N-termin 98.8 6.7E-07 1.4E-11 62.8 13.3 114 25-148 2-115 (125)
176 PRK01037 trmD tRNA (guanine-N( 98.7 2.2E-07 4.8E-12 78.0 10.2 107 152-279 246-352 (357)
177 PRK01037 trmD tRNA (guanine-N( 98.6 4.4E-07 9.5E-12 76.3 10.5 107 21-147 245-354 (357)
178 PF14506 CppA_N: CppA N-termin 98.5 3E-06 6.5E-11 59.6 11.1 115 155-285 2-118 (125)
179 PRK10148 hypothetical protein; 98.5 1.9E-05 4.1E-10 59.7 16.2 117 27-151 5-145 (147)
180 COG3185 4-hydroxyphenylpyruvat 98.4 1.1E-06 2.4E-11 73.3 7.8 102 19-122 163-275 (363)
181 KOG0638 4-hydroxyphenylpyruvat 98.2 2.9E-06 6.4E-11 69.5 6.2 123 152-282 16-149 (381)
182 PRK10148 hypothetical protein; 98.2 4.8E-05 1E-09 57.5 12.3 114 159-281 7-141 (147)
183 PF14696 Glyoxalase_5: Hydroxy 97.9 0.00023 4.9E-09 52.8 10.4 117 152-283 8-128 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.8 0.00012 2.5E-09 57.3 7.4 87 154-250 1-101 (175)
185 PF14507 CppA_C: CppA C-termin 96.2 0.013 2.8E-07 40.5 5.0 92 154-278 6-100 (101)
186 PF06983 3-dmu-9_3-mt: 3-demet 96.1 0.17 3.6E-06 36.5 10.9 104 156-279 6-116 (116)
187 PF06983 3-dmu-9_3-mt: 3-demet 96.1 0.33 7.2E-06 34.9 13.2 96 32-145 11-116 (116)
188 PF15067 FAM124: FAM124 family 95.7 0.14 3E-06 41.0 9.3 105 23-144 128-235 (236)
189 PF15067 FAM124: FAM124 family 95.0 0.59 1.3E-05 37.5 10.9 107 151-278 126-235 (236)
190 PF14507 CppA_C: CppA C-termin 93.3 0.41 8.9E-06 33.2 6.1 92 23-144 5-100 (101)
191 PF13670 PepSY_2: Peptidase pr 80.0 3.1 6.6E-05 27.8 3.7 48 232-285 30-77 (83)
192 COG3865 Uncharacterized protei 76.1 30 0.00065 25.8 9.8 50 226-288 81-130 (151)
193 PRK11700 hypothetical protein; 75.6 31 0.00068 27.0 8.3 78 21-101 37-119 (187)
194 PF13670 PepSY_2: Peptidase pr 71.9 12 0.00027 24.8 4.9 45 102-148 30-74 (83)
195 COG4747 ACT domain-containing 66.0 34 0.00073 24.6 6.0 91 20-120 38-136 (142)
196 COG4747 ACT domain-containing 63.1 54 0.0012 23.6 7.6 114 103-254 17-136 (142)
197 cd04882 ACT_Bt0572_2 C-termina 61.6 20 0.00043 22.0 4.1 26 92-117 39-64 (65)
198 PTZ00039 40S ribosomal protein 61.2 42 0.00092 24.1 6.0 64 225-289 23-101 (115)
199 cd04895 ACT_ACR_1 ACT domain-c 61.0 28 0.0006 22.6 4.7 49 228-276 6-55 (72)
200 PF06185 YecM: YecM protein; 59.9 83 0.0018 24.7 9.4 89 20-111 31-125 (185)
201 PF02208 Sorb: Sorbin homologo 57.2 6.8 0.00015 22.6 1.1 25 151-175 9-33 (47)
202 PHA02754 hypothetical protein; 55.0 23 0.00049 21.7 3.2 50 232-283 15-64 (67)
203 cd04882 ACT_Bt0572_2 C-termina 53.2 28 0.00061 21.3 3.8 26 222-251 39-64 (65)
204 PF07063 DUF1338: Domain of un 52.9 37 0.0008 29.0 5.4 45 25-70 36-85 (302)
205 cd04883 ACT_AcuB C-terminal AC 52.5 40 0.00087 21.2 4.5 26 95-120 44-71 (72)
206 cd04883 ACT_AcuB C-terminal AC 49.1 38 0.00083 21.3 4.0 29 222-254 41-71 (72)
207 TIGR01046 S10_Arc_S20_Euk ribo 48.8 87 0.0019 21.8 5.9 62 227-289 9-85 (99)
208 KOG4657 Uncharacterized conser 47.5 42 0.00092 27.0 4.5 36 161-199 144-179 (246)
209 cd07268 Glo_EDI_BRP_like_4 Thi 47.4 1.2E+02 0.0026 22.8 9.2 75 24-101 2-81 (149)
210 PF07063 DUF1338: Domain of un 45.2 46 0.001 28.4 4.9 30 219-252 181-216 (302)
211 COG5397 Uncharacterized conser 42.5 27 0.00058 29.1 2.8 54 223-282 158-212 (349)
212 KOG4657 Uncharacterized conser 42.3 86 0.0019 25.3 5.5 33 32-67 145-177 (246)
213 PF09142 TruB_C: tRNA Pseudour 41.4 45 0.00099 20.3 3.2 18 265-282 28-45 (56)
214 COG0051 RpsJ Ribosomal protein 41.4 64 0.0014 22.6 4.2 50 224-274 9-58 (104)
215 cd04897 ACT_ACR_3 ACT domain-c 40.5 74 0.0016 20.8 4.2 34 244-277 22-56 (75)
216 PRK12271 rps10p 30S ribosomal 35.4 1.6E+02 0.0034 20.7 6.1 47 227-274 10-56 (102)
217 PF09162 Tap-RNA_bind: Tap, RN 32.9 88 0.0019 21.2 3.7 37 224-282 45-81 (88)
218 COG1791 Uncharacterized conser 32.7 88 0.0019 24.1 4.1 79 101-180 78-161 (181)
219 cd04906 ACT_ThrD-I_1 First of 32.0 96 0.0021 20.6 4.0 26 94-119 42-71 (85)
220 PF08445 FR47: FR47-like prote 31.6 1.2E+02 0.0026 20.2 4.3 24 28-52 59-82 (86)
221 PRK06176 cystathionine gamma-s 29.4 1.5E+02 0.0033 26.1 5.9 30 219-248 351-380 (380)
222 cd04908 ACT_Bt0572_1 N-termina 28.5 1.1E+02 0.0024 18.9 3.6 22 96-117 43-64 (66)
223 smart00116 CBS Domain in cysta 27.7 68 0.0015 17.2 2.4 25 265-289 25-49 (49)
224 cd04885 ACT_ThrD-I Tandem C-te 26.1 1.7E+02 0.0037 18.2 4.2 30 222-252 38-67 (68)
225 cd06398 PB1_Joka2 The PB1 doma 26.0 1.2E+02 0.0027 20.6 3.6 28 263-290 45-72 (91)
226 TIGR00318 cyaB adenylyl cyclas 25.4 3.2E+02 0.0069 21.0 14.1 131 97-249 7-159 (174)
227 PF00571 CBS: CBS domain CBS d 24.7 1.5E+02 0.0033 17.2 5.3 40 232-289 17-56 (57)
228 PF11080 DUF2622: Protein of u 24.1 1.3E+02 0.0027 20.9 3.3 33 101-148 21-53 (96)
229 PTZ00330 acetyltransferase; Pr 23.6 1.2E+02 0.0025 22.1 3.5 26 23-51 115-140 (147)
230 PRK00969 hypothetical protein; 23.1 3.8E+02 0.0083 24.8 7.0 76 101-180 324-405 (508)
231 PF00583 Acetyltransf_1: Acety 22.6 79 0.0017 20.1 2.2 25 23-48 58-83 (83)
232 PF09066 B2-adapt-app_C: Beta2 22.6 2.8E+02 0.0061 19.4 6.8 68 101-172 36-107 (114)
233 PF00585 Thr_dehydrat_C: C-ter 22.1 1.4E+02 0.003 20.3 3.3 32 221-253 49-80 (91)
234 PF14133 DUF4300: Domain of un 22.0 2.1E+02 0.0045 23.8 4.8 42 230-276 143-184 (250)
235 COG0456 RimI Acetyltransferase 21.6 1.3E+02 0.0029 22.6 3.6 29 25-54 127-156 (177)
236 TIGR01329 cysta_beta_ly_E cyst 21.0 2.7E+02 0.0059 24.6 5.8 30 219-248 348-377 (378)
237 KOG2107 Uncharacterized conser 20.8 3.5E+02 0.0077 20.8 5.4 47 127-174 102-153 (179)
238 PF14527 LAGLIDADG_WhiA: WhiA 20.7 2.4E+02 0.0052 19.2 4.3 44 224-272 22-65 (93)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=1.6e-43 Score=298.42 Aligned_cols=284 Identities=80% Similarity=1.323 Sum_probs=228.6
Q ss_pred CCCCcccccccccCCCCCCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeec
Q 022835 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 81 (291)
|.+|++..-.+..+++++.+.+|.|+.|.|+|++++++||+++|||++..+...+...+...++..++...++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 45677777788889998999999999999999999999999999999987655555556667776665455667777654
Q ss_pred CCCccccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCCCCceeEeeee
Q 022835 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
........+.+..|++|.|+|+++++++|+++|+++...+...+++...++||+||+|+.|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 33333345568899999999999999999999999888777776655555889999999999999998889999999999
Q ss_pred CCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHHHHHH
Q 022835 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~~~l~ 241 (291)
+|++++.+||+++|||++......++.++..+++...+......+++..+.+...+..+++.+|++|.|+|++++++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999988654444445666655543322234566544333223345678999999999999999999
Q ss_pred HHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHHhhh
Q 022835 242 LVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~~~~ 289 (291)
+++|+++..+|...++.++++++|+||||+.|+|++..++.++|.
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 999999999988887655688999999999999999999999873
No 2
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=3e-32 Score=232.35 Aligned_cols=241 Identities=21% Similarity=0.239 Sum_probs=164.9
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
+++|+||.|.|+|++++.+||+++|||++..+... .+++.......+..+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 68999999999999999999999999998755321 23333211111222333221 234688999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC---------------------CCCcee
Q 022835 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (291)
Q Consensus 101 ~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~---------------------~~~~~h 156 (291)
+ ++++++++|+++|+++...+.....+....+||+||+|+.+||++.... +.+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7899999999999998755432221222348999999999999985421 235899
Q ss_pred EeeeeCCchhcHHHHHHhhCCeeeeeecCCCcce-eEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHH
Q 022835 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~ 235 (291)
++|.|+|++++.+||+++|||++..+....++.. ...++..... ...+.+... +...+.+|++|.|+|+++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~g~~~Hiaf~v~~~~~ 220 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVGD------PEPGKLHHVSFFLDSWED 220 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--CcccceecC------CCCCceEEEEEEcCCHHH
Confidence 9999999999999999999999876644333321 2233432221 122222110 112238999999998544
Q ss_pred HHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 236 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
..+. ..+|+++|+++..+|++++...++++||+|||||+||++....
T Consensus 221 v~~~-~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 267 (303)
T TIGR03211 221 VLKA-ADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGGGY 267 (303)
T ss_pred HHHH-HHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecCCe
Confidence 3332 2444999999988888766444689999999999999985433
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=1.7e-31 Score=226.84 Aligned_cols=238 Identities=23% Similarity=0.270 Sum_probs=165.4
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 99 (291)
++.+|+||.|.|+|++++++||+++|||++..+.. . ..++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~----~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E----YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C----eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999875532 1 23343211111222333221 23467899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC---------------CCCCceeEeeee
Q 022835 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (291)
Q Consensus 100 v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~---------------~~~~~~hv~l~v 161 (291)
|+ |+++++++|+++|+++...+. +++. ..+||+||+|+.+||+.... .+.+++|++|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQP-EALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCCc-eEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 96 789999999999999776432 2222 45899999999999987431 135689999999
Q ss_pred CCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHHHHHH
Q 022835 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~~~l~ 241 (291)
+|++++.+||+++||+++..+.....+.....++..... .+.+.+.. ..+++++|++|.|+|.++. .++.
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v-~~~~ 214 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTN-------GNGPRLHHIAYWVHDPLNI-IKAC 214 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeec-------CCCCceeeEEEEcCCHHHH-HHHH
Confidence 999999999999999998766443333323333432221 22333321 1235889999999995443 2333
Q ss_pred HHHHHhCCe--eccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 242 LVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 242 ~~~~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
.+++++|++ +...|+++......++|++||+|++|||+....
T Consensus 215 ~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 215 DILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred HHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 444999997 666777655444578999999999999987543
No 4
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=9e-31 Score=221.32 Aligned_cols=237 Identities=17% Similarity=0.206 Sum_probs=164.3
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
+.+|.||.|.|+|++++++||+++|||+...+.. .+ ..|+..+... ..+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~~--~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSRA--HRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCCc--eEEEEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999998754321 11 2354554322 223332221 13577899999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcc---CCCCceEEEEEECCCCCEEEEEEcCCC------------------CCCcee
Q 022835 101 ED---VYKLVENIRAKGGNVTREPGP---LKGGTTHIAFVKDPDGYIFELIQRGPT------------------PEPLCQ 156 (291)
Q Consensus 101 ~d---i~~~~~~l~~~G~~~~~~~~~---~~~g~~~~~~~~dp~G~~iel~~~~~~------------------~~~~~h 156 (291)
++ ++++.++|+++|+++...+.. ..++ ...++|+||+||.+||+..... +.++.|
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~-~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H 145 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGV-LGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGH 145 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccc-eEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccE
Confidence 88 889999999999997764431 1222 3348999999999999874311 236899
Q ss_pred EeeeeCCchhcHHHHHHhhCCeeeeeecC--CCc-ceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecch
Q 022835 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDK--PEY-KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~ 233 (291)
+.|.|+|++++.+||+++|||++..+... +++ .+...++.+.+. ++.+.+... +...+.+|++|.|+|.
T Consensus 146 v~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hiaf~v~d~ 217 (286)
T TIGR03213 146 IVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLMLEVDTL 217 (286)
T ss_pred EEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEEEEcCCH
Confidence 99999999999999999999998766432 111 112344544332 223333211 1235789999999996
Q ss_pred HHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
++. .++..+|+++|+ ....|++++..+..++|++||+|++||+....
T Consensus 218 ~~v-~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 218 DDV-GLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred HHH-HHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 653 222244499999 66677776655678899999999999998743
No 5
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.9e-30 Score=197.98 Aligned_cols=258 Identities=51% Similarity=0.873 Sum_probs=214.8
Q ss_pred ccCCCCCCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCC-----------CceEEEEEecCCCCcceEEEeeec
Q 022835 13 LLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 13 ~~~~~~~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~~~~~ 81 (291)
+..+++.+-.++-|+.+.|.|..+++.||+++|||++.+-.++++ +.|+-.++++|+...+|+++++.+
T Consensus 7 ~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYN 86 (299)
T KOG2943|consen 7 LLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYN 86 (299)
T ss_pred hhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEec
Confidence 346677788999999999999999999999999999998878777 678889999999999999999999
Q ss_pred CCCccccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCCCCceeEeeee
Q 022835 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
++...+..|.++.|+.+.++|+-...+.+..-|.+ ..|.. .+++.||||+.++|++..+.+.++..|.++|
T Consensus 87 YgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~-~~~v~dPdGykF~l~~~~p~s~pv~~V~l~V 157 (299)
T KOG2943|consen 87 YGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK--------GSGCG-IAFVKDPDGYKFYLIDRGPQSDPVLQVMLNV 157 (299)
T ss_pred cCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccceE-EEEEECCCCcEEEEeccCCCCCCeEEEEEEe
Confidence 99999999999999999999887777776655532 12222 3778999999999999888899999999999
Q ss_pred CCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHHHHHH
Q 022835 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~~~l~ 241 (291)
.|+++++.||.+.||+++.+. +..++.++++.++. ...++|..+++...+..+.+...+++..+++....+.+
T Consensus 158 gdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i- 230 (299)
T KOG2943|consen 158 GDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI- 230 (299)
T ss_pred hhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH-
Confidence 999999999999999998864 33456677776653 58899999888877777778888888889999999999
Q ss_pred HHHHHhCCeeccCCccC--CCC-CceEEEEECCCCceEEEecchhhHHhhh
Q 022835 242 LVTQELGGKITRQPGPI--PGL-NTKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~~--~~~-~~~~~~~~DPdG~~ie~~~~~~~~~~~~ 289 (291)
+..+.++..+..+. |+. ...+.-+.||||+.|.|+.++++.+.++
T Consensus 231 ---K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 231 ---KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred ---HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 77766665554432 222 3566778999999999999999987765
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.91 E-value=1.4e-22 Score=175.73 Aligned_cols=223 Identities=22% Similarity=0.348 Sum_probs=150.7
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCc----cc--cCCCCceE
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT----SY--DIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~----~~--~~~~~~~~ 95 (291)
++++||.|.|+|++++.+||++.|||+........... ....++ .++.. +.+..+.... .+ .+|.+++|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~--~G~~~--l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLR--QGQIN--FVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEE--eCCEE--EEEecCCCCCchHHHHHHhCCCceEE
Confidence 47899999999999999999999999998763222221 222333 23333 3343322111 11 26789999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC-------------------------C
Q 022835 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP-------------------------T 150 (291)
Q Consensus 96 i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~-------------------------~ 150 (291)
+||.|+|+++++++++++|+++..+|.....|...+..++.++|..+-|++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999887765431122222334555555555554210 0
Q ss_pred CCCceeEeeeeC--CchhcHHHHHHhhCCeeeeeecCCCc--c-eeEEEecccccccceeEeeccccC---cc------c
Q 022835 151 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEY--K-YTLAMLGYAEEDQTTVLELTYNYG---VT------E 216 (291)
Q Consensus 151 ~~~~~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~l~~~~~---~~------~ 216 (291)
..+++|+++.|+ |++++.+||+++|||++..+...... + ...++.. +.....++|..+.. .. .
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~---~~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS---PDGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC---CCCcEEEEEeccCCCCCCCHHHHHHH
Confidence 124999999999 99999999999999998876543221 1 1222222 11246677765311 11 1
Q ss_pred cccCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCc
Q 022835 217 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 217 ~~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
...|+|++|++|.|+|+++++++| +++|++++..|.
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P~ 268 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTPD 268 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCCH
Confidence 224789999999999999999999 999999998773
No 7
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.88 E-value=9.8e-21 Score=162.67 Aligned_cols=224 Identities=17% Similarity=0.247 Sum_probs=159.0
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCC--ceEEEEEecCCCCcceEEEeeecCC------------------
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYG------------------ 83 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~------------------ 83 (291)
|+||.++|.|.+++..||+..|||+.+.......+ ......++ ++...+++.-...+.
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r--~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR--SGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFS 78 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE--eCCEEEEEeCCCCCccccccccccccccccccC
Confidence 68999999999999999999999999876553222 22333343 445555554331110
Q ss_pred ---Cccc--cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCC----CceEEEEEECCCCCEEEEEEcCC-----
Q 022835 84 ---VTSY--DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKG----GTTHIAFVKDPDGYIFELIQRGP----- 149 (291)
Q Consensus 84 ---~~~~--~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~----g~~~~~~~~dp~G~~iel~~~~~----- 149 (291)
...+ .+|++++.+||+|+|++++++++.++|+....+|..... |...+..++.++|.++.|++...
T Consensus 79 ~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~~~ 158 (398)
T PLN02875 79 SDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGAK 158 (398)
T ss_pred cHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCCCc
Confidence 0111 278899999999999999999999999998877665422 22334556778888888877421
Q ss_pred ------------------CCCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCc-----ceeEEEecccccccceeE
Q 022835 150 ------------------TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-----KYTLAMLGYAEEDQTTVL 206 (291)
Q Consensus 150 ------------------~~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l 206 (291)
...+++|+++.|++++.+..||+++|||+........+. +....++..+ .....+
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v~i 236 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMVLL 236 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcEEE
Confidence 023599999999999999999999999998865443221 1233334422 235667
Q ss_pred eeccccCc---cc-------cccCcceeeEEEEecchHHHHHHHHHHHHHh----CCeeccCC
Q 022835 207 ELTYNYGV---TE-------YTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 255 (291)
Q Consensus 207 ~l~~~~~~---~~-------~~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~----G~~~~~~p 255 (291)
+|..+... .+ ...|+|++||||.|+|+.+++++| +++ |++++..|
T Consensus 237 pLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 237 PLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 77665321 11 235789999999999999999999 998 99999976
No 8
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.86 E-value=2.1e-19 Score=143.03 Aligned_cols=194 Identities=21% Similarity=0.293 Sum_probs=132.3
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC-ccccCCCCceEEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFA 97 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~ 97 (291)
...+.+..|.|.|+|++++..||++++|+++..+... .+.+..++. ..+.+.+.+.. .+.....|+.|+|
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE---EEEEEEeCCCCCCCCccccceeeee
Confidence 3467899999999999999999999999999876542 355555532 33444443333 2334667999999
Q ss_pred EEeCC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC------------------------
Q 022835 98 IATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT------------------------ 150 (291)
Q Consensus 98 ~~v~d---i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~------------------------ 150 (291)
|.+++ +..+..++...|+.+... .... -...+||.||+||-||++..++.
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~Ga-~DH~--vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLVGA-SDHL--VSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccccc-Ccch--hheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99975 667778888888876532 1111 12248999999999999987531
Q ss_pred ------------CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccc--cCccc
Q 022835 151 ------------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYN--YGVTE 216 (291)
Q Consensus 151 ------------~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~--~~~~~ 216 (291)
...+.||.|.|.|++++.+||+++|||++..+.+ .-.|+..++.+ +.+.+... .....
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YH--HHia~N~W~s~~~~~ 225 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYH--HHLAANTWNSRGARP 225 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcc--eeEEEeccccCCCCC
Confidence 1348999999999999999999999999887621 22345544543 33333221 11111
Q ss_pred c-ccCcceeeEEEEecc
Q 022835 217 Y-TKGNAYAQVAISTDD 232 (291)
Q Consensus 217 ~-~~~~~~~h~~f~v~d 232 (291)
. ....|+..+.+.+.+
T Consensus 226 ~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 226 RNANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCCCcceEEEEcCC
Confidence 1 122367777777777
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=1.2e-19 Score=138.66 Aligned_cols=135 Identities=64% Similarity=1.080 Sum_probs=103.4
Q ss_pred CCCCCCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCce
Q 022835 15 EWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFG 94 (291)
Q Consensus 15 ~~~~~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (291)
.-++...++|+||.|.|+|++++.+||+++|||++..+...+...+..+++..++......+.+.......+...+.++.
T Consensus 9 ~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~ 88 (150)
T TIGR00068 9 ADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFG 88 (150)
T ss_pred cCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCcee
Confidence 34567789999999999999999999999999998776554454455566665543344556555433322333455889
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 95 ~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
|++|.|+|+++++++|.++|+++..++...+.+....+||+||+|++|||++..+
T Consensus 89 hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 89 HIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred EEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 9999999999999999999999887765555555555889999999999998764
No 10
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=4.9e-20 Score=146.53 Aligned_cols=131 Identities=34% Similarity=0.594 Sum_probs=105.6
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEeccccc---------------ccceeEeeccccCcc
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNYGVT 215 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~ 215 (291)
...+.|+.|+|.|++++.+||+++|||++..+...++.++.+++++.++. .....|||+.+.+..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 35699999999999999999999999999988877777788888864321 123578997765433
Q ss_pred c------cccC----cceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhH
Q 022835 216 E------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 216 ~------~~~~----~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~ 285 (291)
. +..+ .|+.|++|.|+|++++++++ +++|+++...|...++ .+++|++||||++|||++.+.+.
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 1 3333 48999999999999999999 9999999987765333 57899999999999999998876
Q ss_pred Hh
Q 022835 286 KE 287 (291)
Q Consensus 286 ~~ 287 (291)
+.
T Consensus 227 ~~ 228 (233)
T PLN02367 227 TT 228 (233)
T ss_pred cc
Confidence 43
No 11
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=4.1e-19 Score=132.26 Aligned_cols=124 Identities=56% Similarity=1.006 Sum_probs=95.7
Q ss_pred EEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHHHH
Q 022835 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~~~ 107 (291)
.|.|+|++++++||+++|||++......+..++.++++..++......+++.......+...+.+..|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999988776666666777787665434444566654333333345668899999999999999
Q ss_pred HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCC
Q 022835 108 ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~ 151 (291)
++|+++|+++..++...+++....++|+||||++|||++....+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 99999999988766555566555578899999999999987543
No 12
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=1.7e-19 Score=137.78 Aligned_cols=137 Identities=46% Similarity=0.806 Sum_probs=101.3
Q ss_pred CCCCCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEE
Q 022835 148 GPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVA 227 (291)
Q Consensus 148 ~~~~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~ 227 (291)
+....++.|+.|.|+|++++.+||+++|||++..+....+.++..++++.+.......+++.......+...+.+..|++
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 34467899999999999999999999999998765443344444555654332233445553322222223345789999
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHHhh
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~~~ 288 (291)
|.|+|++++++++ .++|+++..+|...+....+.+||+||||++|||++..+-.+.+
T Consensus 92 f~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~ 148 (150)
T TIGR00068 92 IGVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGL 148 (150)
T ss_pred EecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhc
Confidence 9999999999999 99999998888655554457889999999999999998776654
No 13
>PLN02367 lactoylglutathione lyase
Probab=99.82 E-value=9.7e-19 Score=139.16 Aligned_cols=128 Identities=36% Similarity=0.668 Sum_probs=102.5
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCC---------------CcceEEEeeecCCC
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE---------------QSHFVVELTYNYGV 84 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~l~~~~~~~~ 84 (291)
.=-.+.|+.|.|.|++++++||+++|||++..+.++++.++.++|+..++. .....|+|.++.+.
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 346799999999999999999999999999999888888899999865331 11346788765543
Q ss_pred c------cccCC----CCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 85 T------SYDIG----TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 85 ~------~~~~~----~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
. .+..+ .|+.|+||.|+|+++++++|+++|+++...|....+ ...++++||||++|||++...
T Consensus 152 e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 152 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 2 13322 489999999999999999999999999877765443 234789999999999999773
No 14
>PRK10291 glyoxalase I; Provisional
Probab=99.82 E-value=3e-19 Score=133.00 Aligned_cols=123 Identities=50% Similarity=0.908 Sum_probs=91.7
Q ss_pred eeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHH
Q 022835 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~ 237 (291)
.|.|.|++++.+||+++|||++......++..+.++++..++......+++........+..+.+.+|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987665545555667776644322334456644333223334567899999999999999
Q ss_pred HHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhh
Q 022835 238 EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 238 ~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~ 284 (291)
++| +++|+++..+|...+++..+++||+||||++|||++.++.
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 999 9999999877765555334678899999999999998753
No 15
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=5.6e-18 Score=132.27 Aligned_cols=127 Identities=35% Similarity=0.651 Sum_probs=97.4
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCC---------------cceEEEeeecCCC
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNYGV 84 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~~~~~~~~ 84 (291)
.=-++.|+.|.|+|++++++||+++|||++..+...+..+++++++..++.. ....|++..+...
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 3578999999999999999999999999998887777777888887643211 1235777654332
Q ss_pred cc------cc----CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 85 TS------YD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 85 ~~------~~----~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.. +. .+.|+.|+||.|+|+++++++|+++|+.+...+....+ ...++++||+|++|||++..
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECC
Confidence 11 22 22489999999999999999999999998866543322 23477899999999999976
No 16
>PRK11478 putative lyase; Provisional
Probab=99.81 E-value=2.5e-18 Score=127.97 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=85.1
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCC-ceEEEEEecCCCCcceEEEeeecC--C-CccccCCCCce
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNY--G-VTSYDIGTGFG 94 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~--~-~~~~~~~~~~~ 94 (291)
+.+.+++||+|.|+|++++.+||+++|||++......+.. .+. ..+..+ + ...+++.... . ........|+.
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~-~--~~~l~l~~~~~~~~~~~~~~~~g~~ 77 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALN-G--QYVIELFSFPFPPERPSRPEACGLR 77 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecC-C--CcEEEEEEecCCCCCCCCCCCCcee
Confidence 4688999999999999999999999999998644222221 111 112222 1 2334443211 1 11112335788
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 95 ~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|+||.|+|+++++++|+++|+++...+....+|.. ++||+||+|+.+||++.
T Consensus 78 hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 78 HLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKR-FTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCE-EEEEECCCCCEEEEEeC
Confidence 99999999999999999999997654333334544 48999999999999873
No 17
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=3e-18 Score=129.72 Aligned_cols=123 Identities=21% Similarity=0.334 Sum_probs=88.7
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCC-----------CceEEEEEecCCCCcceEEEeeecCC--C--c
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYG--V--T 85 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~~~~~~~--~--~ 85 (291)
+.+++||+|.|+|++++.+||++ |||++..+...++ ......++...++ ...+++..... . .
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDG--HSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCC--CceEEEEEecCCCCcCc
Confidence 47899999999999999999999 9998865543221 2234445543222 33444443211 1 1
Q ss_pred ---cccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 86 ---SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ---~~~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
....+.|..|+||.|+|+++++++|+++|+++..++...+++.+ .+|++||+|+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r-~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYR-LCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeE-EEEEECCCCCEEEeeec
Confidence 11234578999999999999999999999998876655555554 48999999999999984
No 18
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.80 E-value=1.2e-18 Score=135.96 Aligned_cols=129 Identities=32% Similarity=0.587 Sum_probs=98.4
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccc---------------cceeEeeccccCcc
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVT 215 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~ 215 (291)
..++.|+.|+|.|++++++||+++|||++..+...++.++.+++++..... ....|+|..+.+..
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 457999999999999999999999999998886655656777777532210 13468887643322
Q ss_pred c------cc----cCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhH
Q 022835 216 E------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 216 ~------~~----~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~ 285 (291)
+ +. .+.|+.|++|.|+|+++++++| +++|+++...|.... +.+++|++||||++|||++.+.+.
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~~~ 178 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKRIG 178 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCCch
Confidence 1 21 1248999999999999999999 999999987665432 246788999999999999987654
No 19
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=6.1e-18 Score=124.30 Aligned_cols=120 Identities=46% Similarity=0.786 Sum_probs=89.9
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCc-cccccCcceeeEEEEecc
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~f~v~d 232 (291)
+.|+.|.|+|++++.+||+++||+++.......+.+...+++..++...+..+++...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876654444345555666433112345555443222 122334578999999999
Q ss_pred hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
++++++++ +++|+++..+|...+ +.+++||+||||++|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 99999999 999999998887652 468899999999999985
No 20
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=1.6e-17 Score=122.00 Aligned_cols=120 Identities=53% Similarity=0.944 Sum_probs=89.0
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC-ccccCCCCceEEEEEeCC
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIATED 102 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~v~d 102 (291)
|.||.|.|+|++++.+||+++|||++......++..+..+++..+.......+.+...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999887655544455667776543102333444433221 222344578899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
+++++++++++|+.+..++... .+. .+++|+||+|+++||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~~~-~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-GMK-GIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-CCc-eEEEEECCCCCEEEeC
Confidence 9999999999999988877655 333 3488999999999985
No 21
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.78 E-value=2.1e-18 Score=132.01 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=88.7
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCC-CcceeEEEecccccc---cceeEeeccccCccccccCcceeeEEE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEED---QTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~~~h~~f 228 (291)
+++|++|.|+|++++++||+++||+++..+.... +.+....++..+... ..+.+.+.. ..+.+++|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999987654332 222344555532210 011121211 11458999999
Q ss_pred EecchHHHH---HHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHH
Q 022835 229 STDDVYKSA---EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 229 ~v~d~~~~~---~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~ 286 (291)
.|+|++++. ++| +++|+++.++|+++..+...++|++|||||+|||+......+
T Consensus 74 ~v~die~~~~~~~~L----~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~~~ 130 (153)
T cd07257 74 EVHDFDAQGLGHDYL----REKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDLVN 130 (153)
T ss_pred EcCCHHHHHHHHHHH----HHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCceeEc
Confidence 999988876 556 999999998888876555678899999999999998765443
No 22
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.78 E-value=1.8e-17 Score=124.44 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=89.5
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC-c---c--ccCCCCceEEE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-T---S--YDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~---~--~~~~~~~~~i~ 97 (291)
|+|+.|.|+|++++.+||+++|||++......+ .....++. .+. ..+.+...... . . ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~--~g~--~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLR--QGD--INFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEE--cCC--EEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999987764432 12233343 222 23334332111 1 1 12456889999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC
Q 022835 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 98 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
|.|+|+++++++|+++|+++..+|...+++.+ .++++||+|++|||++....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~-~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGELK-IAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeEE-EEEEeccCCcEEEEEecCCC
Confidence 99999999999999999999988887666554 48899999999999997743
No 23
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.5e-18 Score=139.60 Aligned_cols=255 Identities=20% Similarity=0.327 Sum_probs=171.5
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCC--ceEEEEEecCCCCcceEEEeeecCCCcc-----ccCCC
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYGVTS-----YDIGT 91 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 91 (291)
-.+.+|+||.+.|.|...+..||+..|||+.....+.+.+ .+..+.++ ++...+++.....+.... ..+|.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr--~g~~vFv~~s~~~p~~~~~G~~l~~Hgd 90 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALR--QGKIVFVFNSAYNPDNSEYGDHLVKHGD 90 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhh--cCCEEEEEecCCCCCchhhhhhhhhccc
Confidence 3588999999999999999999999999998765433332 12222233 444545444333332211 23778
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEEEcCC-------------C------
Q 022835 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQRGP-------------T------ 150 (291)
Q Consensus 92 ~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~~~~~-------------~------ 150 (291)
|...+||+|+|.+++.+.+.++|+.+..+|....+ |...++.++.+.-....+++... .
T Consensus 91 gvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~ 170 (381)
T KOG0638|consen 91 GVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPK 170 (381)
T ss_pred chhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCC
Confidence 89999999999999999999999999988766654 33444556666555555555431 0
Q ss_pred -----CCCceeEeeeeC--CchhcHHHHHHhhCCeeeeeecCCCcce-----eEEEecccccccceeEeeccccCcc---
Q 022835 151 -----PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYKY-----TLAMLGYAEEDQTTVLELTYNYGVT--- 215 (291)
Q Consensus 151 -----~~~~~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~--- 215 (291)
..+++|+..+++ .++.+.+||.+.|||..-+..++.+.+. +.+.+. ...+...+.+.++-...
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKK 248 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccH
Confidence 235899999999 5889999999999999877665433211 112222 12223334343321111
Q ss_pred -------ccccCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCC--------------------CceEEEE
Q 022835 216 -------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGL--------------------NTKITSF 268 (291)
Q Consensus 216 -------~~~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~--------------------~~~~~~~ 268 (291)
.+..|+|++|+++.++|+-.+++.+ +++|++++..|...-.. ...++.=
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD 324 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVD 324 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEe
Confidence 2567889999999999999999999 99999999887631000 0122333
Q ss_pred ECCCCceEEEecc
Q 022835 269 VDPDGWKTVLVDN 281 (291)
Q Consensus 269 ~DPdG~~ie~~~~ 281 (291)
.|-.|.++.|+..
T Consensus 325 ~De~gyLLQIFTK 337 (381)
T KOG0638|consen 325 FDENGYLLQIFTK 337 (381)
T ss_pred cCCCcEEeeeecc
Confidence 6777888888754
No 24
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.7e-17 Score=122.44 Aligned_cols=124 Identities=26% Similarity=0.317 Sum_probs=85.3
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCc-cccCCCCceEEEEE
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-SYDIGTGFGHFAIA 99 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~i~~~ 99 (291)
+.+|+||+|.|+|++++.+||+++|||+.......++.......+... +...+.+......... ....+.++.|++|.
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~ 79 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GGYQLELFSFPNPPERPSYPEACGLRHLAFS 79 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CCcEEEEEEcCCCCCCCCCCcCCCceEEEEE
Confidence 368999999999999999999999999987654322221112223221 2222222211211111 11234578999999
Q ss_pred eCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 100 v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|+|+++++++|+++|+++...+....++.. ++|++||+|+.|||+|
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 80 VEDIEAAVKHLKAKGVEVEPIRVDEFTGKR-FTFFYDPDGLPLELYE 125 (125)
T ss_pred eCCHHHHHHHHHHcCCccccccccCCCceE-EEEEECCCCCEEEecC
Confidence 999999999999999998776555555554 4899999999999975
No 25
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=9.2e-18 Score=125.76 Aligned_cols=125 Identities=20% Similarity=0.171 Sum_probs=90.0
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
|.++.|+.|.|+|++++.+||+++||+++..+.. . ...++...+...+..+.+..... ...+++|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 4679999999999999999999999999876532 1 12334432211234455533211 135899999999
Q ss_pred cchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHH
Q 022835 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~ 286 (291)
+|+++..+ +.++|+++|+++...|++++..+.+++||+||+|++|||....+..+
T Consensus 71 ~d~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~~ 125 (134)
T cd08360 71 GDIDEVML-GGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYVD 125 (134)
T ss_pred CCHHHHHH-HHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccccccC
Confidence 99776654 22444999999888887776555677999999999999998776653
No 26
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.77 E-value=9.8e-18 Score=125.90 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=89.9
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc------cccCcceeeEE
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~~ 227 (291)
++|+.|.|+|++++.+||+++|||++..+....+ ....++.. ....+.+....+... ...+.+.+|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999876643221 22333331 134455543221111 12345889999
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhh
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~ 284 (291)
|.|+|++++++++ +++|++++.+|...++ +.+.++++||||++|||++++.-
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCC
Confidence 9999999999999 9999999998887554 57899999999999999997754
No 27
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=4.7e-17 Score=119.16 Aligned_cols=115 Identities=45% Similarity=0.825 Sum_probs=86.8
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCC-----------CceEEEEEecCCCCcceEEEeeecCCCccccCC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIG 90 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (291)
.++.|+.|.|+|+++|++||+++|||++..+...++ +.+..+++.+++......+++.++.+..++..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999887765554 344455565544455678888877655555555
Q ss_pred CCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 91 TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 91 ~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
.+ |++|.|++. ++.++|+++|+.+...+. + +++++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 566666666 556999999998876543 2 4789999999999974
No 28
>PLN02300 lactoylglutathione lyase
Probab=99.77 E-value=1.1e-17 Score=141.32 Aligned_cols=131 Identities=48% Similarity=0.818 Sum_probs=99.7
Q ss_pred CCCCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEE
Q 022835 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f 228 (291)
....++.|+.|.|+|++++.+||+++|||++..+...++..+...++..++...+..+++...........+.+..|++|
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~ 99 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGI 99 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEE
Confidence 44678999999999999999999999999987664444444455555543322344566654332222334567889999
Q ss_pred EecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
.|+|++++.+++ +++|+++...|...++++.+++||+||||++|||+++..
T Consensus 100 ~v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 100 AVEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred EeCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999999 999999998887766544578899999999999999764
No 29
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=1.8e-17 Score=125.39 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcce-eEEEecccccccceeEeeccccCccccccCcceeeEEEE
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~ 229 (291)
+.+++|++|.|+|++++.+||+++|||++..+...+++.. ...++..... .+.+.+... .+++++|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEEE
Confidence 4579999999999999999999999999877653322221 2233432221 223333210 13478999999
Q ss_pred ecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
|+|+++..+.. .+++++|+++..+|.++....++++||+|||||+|||+..
T Consensus 75 v~d~~~l~~~~-~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAG-DIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHH-HHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99977643332 4459999998888876653346889999999999999764
No 30
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=2.1e-17 Score=122.06 Aligned_cols=119 Identities=27% Similarity=0.419 Sum_probs=85.4
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCcc---ccCCCCceEEEEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~i~~~ 99 (291)
+++||.|.|+|++++++||+++|||+.......+..++..+|+..++ + ..+++........ .....|..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD-G--ARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC-C--cEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999765433333444556666542 2 2344443222111 1233578999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
|+ ++++++++|+++|+++..++...++|.+. ++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEeC
Confidence 95 58999999999999988766555555544 67999999999983
No 31
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=1.2e-17 Score=126.50 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=88.3
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCC-----------CcceeEEEecccccccceeEeeccccCccc----
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-----------EYKYTLAMLGYAEEDQTTVLELTYNYGVTE---- 216 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 216 (291)
.+++|++|.|+|++++.+||++ |||++..+.... ..+..+.++..+. ....++|....++..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcC
Confidence 4689999999999999999998 999876543211 1123444554222 245677755322111
Q ss_pred ---cccCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 217 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ---~~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
...+.+++|++|.|+|+++++++| +++|+++..+|...+. +.+++||+||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 123457889999999999999999 9999999876654433 46889999999999999974
No 32
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.76 E-value=6.4e-17 Score=121.93 Aligned_cols=118 Identities=21% Similarity=0.379 Sum_probs=87.0
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 99 (291)
|+.++.||.|.|+|++++.+||+++|||++..+.. ..+++..+ +. .+.+...........+.+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~--g~--~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN--GL--WIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC--Ce--EEEeeccCCCCCccCCCCeeEEEEE
Confidence 57899999999999999999999999999875422 23455443 22 2333322221222234467899999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 100 TE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++ |+++++++|+++|+++...+...+++.+. ++|+||+||+|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~-~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKS-IYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceE-EEEECCCCCEEEEEeCC
Confidence 87 99999999999999987666555555444 89999999999999876
No 33
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.76 E-value=8e-17 Score=124.41 Aligned_cols=127 Identities=30% Similarity=0.352 Sum_probs=86.6
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEe----cc--------------CCCceEEEEEecCCCCcceEEEeeecC
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR----DV--------------PEEKYSNAFLGFGPEQSHFVVELTYNY 82 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~l~~~~~~~~~~l~~~~~~ 82 (291)
.++++||+|.|+|++++++||+++|||++..+. .. ....+..+++..++ ...+++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 468999999999999999999999999886421 10 01124556665443 2224444432
Q ss_pred CCc-cc----cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCC-ccC-CC-CceEEEEEECCCCCEEEEEEcCCC
Q 022835 83 GVT-SY----DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPL-KG-GTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 83 ~~~-~~----~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~-~~~-~~-g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
... +. ..+.|..|+||.|+|+++++++|+++|+.+...+ ... ++ .....+|++||||++|||++....
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 211 11 1246899999999999999999999998754322 211 11 123458999999999999998753
No 34
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=4.3e-17 Score=119.37 Aligned_cols=114 Identities=32% Similarity=0.580 Sum_probs=83.5
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCC-----------cceeEEEecccccccceeEeeccccCccccccCc
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN 221 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (291)
++.|+.|+|.|++++.+||+++|||++..+...++ +.+.++++...+...+..++|..+.+..++..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999877664443 3344444543222345678888766655555555
Q ss_pred ceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 222 ~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+ |++|.|++. ++.++| +++|+++...|. .++++.||||++|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666664 555777 999998876544 17889999999999975
No 35
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=4.2e-17 Score=124.86 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=86.5
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccC-CCceEEEEEecCCCCcce---EEEeeecCCCccccCCCCceEEEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHF---VVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
+|+||+|.|+|++++++||+++||+++..+...+ .......|+..+++.... .+.+.. ..+.++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987654433 233456677654321100 011111 12468999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 99 ATEDVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~di~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+|++++. ++|+++|+++...+.....+...++|++||+|++|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 99999999987665544444445689999999999999765
No 36
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.74 E-value=1.5e-16 Score=120.27 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=83.9
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCc-eEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
.+++|+||+|.|+|++++.+||+++|||++..+...+.+. ....|+..+.. .+ .+.+... ++.++.|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h-~~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PH-DIAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cc-eEEEecC-------CCCCceEEEE
Confidence 4789999999999999999999999999986654322222 23455544322 22 2323221 1347899999
Q ss_pred EeCCHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 99 ATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 99 ~v~di~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
.|+|+++ +.++|+++|+++...|.....+...++||+||+||.|||...
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999887 678999999998655443332223348999999999999764
No 37
>PRK11478 putative lyase; Provisional
Probab=99.74 E-value=4.9e-17 Score=120.96 Aligned_cols=120 Identities=21% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCC-cceeEEEecccccccceeEeeccccCcc---ccccCcceeeEE
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVT---EYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~h~~ 227 (291)
.+++|+.|.|+|++++.+||+++|||++.......+ ..+.. .+...+ +..+++....... ......+..|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999764321111 11111 111111 3445554321111 112234788999
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
|.|+|++++.+++ +++|+++...+. .+..+.+++||+||||+.|||++
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRV-DPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeecccc-CCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999 999999864432 23234688999999999999986
No 38
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.74 E-value=4.3e-17 Score=125.94 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=86.5
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeee----cC--------------CCcceeEEEecccccccceeEeecccc
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTV----DK--------------PEYKYTLAMLGYAEEDQTTVLELTYNY 212 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~ 212 (291)
+.+++|+.|.|+|++++.+||+++|||++..+. .. ......+.++..++ +..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 356899999999999999999999999874221 10 01113445554322 3446776543
Q ss_pred Ccccc-----ccCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccC--CCC-CceEEEEECCCCceEEEecchh
Q 022835 213 GVTEY-----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPI--PGL-NTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 213 ~~~~~-----~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~--~~~-~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
..... ..+.|..|++|.|+|++++++++ +++|+.+..++... ++. ..+++||+||||++|||+++..
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 22111 12358899999999999999999 99998765433221 111 2378999999999999998754
No 39
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.74 E-value=1.4e-16 Score=117.40 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=82.9
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
+++|+||.|.|+|++++.+||+++|||++..... .+ ..++..........+.+... ...+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6899999999999999999999999999865432 11 23443322222233333221 134678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
. ++++++++|+++|+++...+.....+....+||+||+||+|||++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 6 79999999999999987654433333223489999999999998764
No 40
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=7.2e-17 Score=119.19 Aligned_cols=119 Identities=19% Similarity=0.264 Sum_probs=81.4
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc---cccCcceeeEEEE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~~f~ 229 (291)
+++|+.|.|+|++++.+||+++|||++..+......++...++..++ +..+++........ .....+..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999765433222233344444322 34456643221111 1223478999999
Q ss_pred ecc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 230 TDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
|+| ++++.+++ +++|+++..+|...+. +.+.++++|||||+|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 965 56666666 9999999877754433 345678999999999983
No 41
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=2.6e-16 Score=117.83 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=85.3
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~ 101 (291)
.+|+||.|.|+|++++.+||+++||+++..... . ...|+..+.......+.+..... ...++.|+||.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 589999999999999999999999999865532 1 23566543222233444433211 1358899999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 di~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|++++. ++|+++|+++...+...+.+...++||+||+|++|||....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 888766 59999999977655444444444589999999999999754
No 42
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.73 E-value=4.7e-16 Score=127.96 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=148.6
Q ss_pred CCcceeEEEEEEeCCH-HHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccc--cCCCCceE
Q 022835 19 KDKRRFLHAVYRVGDL-DRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~-~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~ 95 (291)
+...++.+|.+.|.|. ++...++.. |||+.....-... ...++ +++..+++.-.+.+....+ .+|++.+.
T Consensus 18 ~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrsk~----v~l~r--QGdinlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 18 EGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRSKA----VTLYR--QGDINLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCCCceeEEEEecCCHHHHHHHHHHH-hCccccccccccc----eeEEE--eCCEEEEEcCCCcchhhHHHHhcCCchhe
Confidence 4599999999999999 555555555 9999876533221 12222 3455666544443333333 38889999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCc-----cCC----CCceEEEEEECCCC--CE--EEEEEc---C-CC---CCCce
Q 022835 96 FAIATEDVYKLVENIRAKGGNVTREPG-----PLK----GGTTHIAFVKDPDG--YI--FELIQR---G-PT---PEPLC 155 (291)
Q Consensus 96 i~~~v~di~~~~~~l~~~G~~~~~~~~-----~~~----~g~~~~~~~~dp~G--~~--iel~~~---~-~~---~~~~~ 155 (291)
++|+|+|...+++++++.|++....+. ..+ -|. ..+||.|.+| .. .++... . +. ...++
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~gigg-sllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~ID 169 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGG-SLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAID 169 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCC-cEEEEeccCCCCcccccccccccccccccccCceeec
Confidence 999999999999999999995332221 111 122 2478888773 11 111111 1 11 23689
Q ss_pred eEeeeeC--CchhcHHHHHHhhCCeeeeeecCCCc---ceeEEEecccccccceeEeeccccCccc-------cccCcce
Q 022835 156 QVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEY---KYTLAMLGYAEEDQTTVLELTYNYGVTE-------YTKGNAY 223 (291)
Q Consensus 156 hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~ 223 (291)
|++..|+ .++.+..||+++|||+.....+..+. -.+.++.. ++....|.|....+..+ ...|.|+
T Consensus 170 Hl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S---p~G~vrlplN~s~~~~sqi~efl~~y~G~GI 246 (363)
T COG3185 170 HLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS---PCGKVRLPLNESADDKSQIGEFLREYRGEGI 246 (363)
T ss_pred hhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec---CCCcEEeecccCCCchhHHHHHHHHhCCCcc
Confidence 9987766 79999999999999998887664332 12333333 33345566654433332 2367799
Q ss_pred eeEEEEecchHHHHHHHHHHHHHhCCeeccCCcc
Q 022835 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGP 257 (291)
Q Consensus 224 ~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~ 257 (291)
+||+|.++|+.++++++ +++|+++...|..
T Consensus 247 QHIA~~T~dI~~tv~~l----r~rG~~fl~ip~t 276 (363)
T COG3185 247 QHIAFGTDDIYATVAAL----RERGVKFLPIPET 276 (363)
T ss_pred eEEEecccHHHHHHHHH----HHcCCccCCCchh
Confidence 99999999999999999 9999999987763
No 43
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.73 E-value=3.9e-17 Score=121.20 Aligned_cols=119 Identities=30% Similarity=0.510 Sum_probs=85.6
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCC-Cc---cc--cCCCCceEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-VT---SY--DIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~---~~--~~~~~~~~i 96 (291)
+|+|+.|.|+|++++.+||+++|||+.......+..+...+++..++ . .+++..... .. .+ ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~--~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN--T--KVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC--E--EEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999876544444445566665542 2 233332211 11 11 124578899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CccCCCCceEEEEE--ECCCCCEEEEEE
Q 022835 97 AIATEDVYKLVENIRAKGGNVTRE-PGPLKGGTTHIAFV--KDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~di~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~dp~G~~iel~~ 146 (291)
||.|+|+++++++|+++|+++..+ |...++|... .++ +||||++||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~-~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPV-AFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEE-EEecccccCcEEEEecC
Confidence 999999999999999999998764 5555565443 566 799999999975
No 44
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.73 E-value=8.2e-17 Score=118.58 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=81.2
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
+.++.|+.|.|+|++++.+||+++|||++..... ++ ..+ +..........+.+.. ...++..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~~-~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RVY-LKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eEE-EEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 4578999999999999999999999999875531 11 122 2211111223343321 1134788999999
Q ss_pred c---chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 231 D---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
. |++++.+++ +++|+++...|.......++.+||+|||||+|||+...+
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 8 566666666 999999887665433323578999999999999987654
No 45
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=8.8e-17 Score=121.08 Aligned_cols=119 Identities=12% Similarity=0.175 Sum_probs=85.0
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchH
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~ 234 (291)
.|+.|.|+|++++.+||+++|||++..+... ...++........+.+.+.. ....+++|++|.|+|.+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998776421 23344432221223333211 12358999999999854
Q ss_pred HHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHH
Q 022835 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~ 286 (291)
+ +.++.++++++|+++..+|++++..+.+++||+||+|++|||+-..+..+
T Consensus 69 ~-v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 69 D-IGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred H-HHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceec
Confidence 3 33333555999999998888876556788999999999999988765443
No 46
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=1.5e-16 Score=117.31 Aligned_cols=120 Identities=24% Similarity=0.298 Sum_probs=83.9
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCC-cceeEEEecccccccceeEeeccccCc--c-ccccCcceeeEE
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGV--T-EYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-~~~~~~~~~h~~ 227 (291)
.+++|+.|.|+|++++.+||+++|||+........+ ..+. +.+...+ +..+++...... . ....+.+.+|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYK-LDLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEE-EEEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999876532222 2222 2222211 233444322111 1 112345789999
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
|.|+|++++.+++ +++|+++...|..... +.+++|++||+|++|||+|
T Consensus 78 ~~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHL----KAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHH----HHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 9999999999999 9999998876543332 4578999999999999975
No 47
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.72 E-value=1.6e-16 Score=122.75 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=80.7
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
|.+++|++|.|+|++++.+||+++|||++.......++.....++.... ....+.+.. ..+++++|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4679999999999999999999999999875543222222233343222 122333321 1235789999999
Q ss_pred cchHHHHHHHHHHHHHhCCe--eccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 231 DDVYKSAEVVNLVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+|.++ +.++.++++++|+. +...|+.+...+.+++||+|||||+|||+...
T Consensus 72 ~~~~~-v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHN-IIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHH-HHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 97333 33333444999986 33445544433457899999999999998654
No 48
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.72 E-value=1.3e-16 Score=122.27 Aligned_cols=124 Identities=16% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCC---CcceeEEEecccccccceeEeeccccCccccccCcceeeE
Q 022835 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP---EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (291)
.+.++.|+.|.|+|++++.+||+++|||++....... +....+.++..+.. +..+.+... ..+.+++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcC------CCCceeEEE
Confidence 3568999999999999999999999999986643221 11234555554322 233443221 123578999
Q ss_pred EEEecchHH---HHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhH
Q 022835 227 AISTDDVYK---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 227 ~f~v~d~~~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~ 285 (291)
+|.|+|.++ +.++| +++|+++...|+.++..+.+++|++||+|++|||+......
T Consensus 78 af~V~d~~~l~~~~~~L----~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~~ 135 (154)
T cd07237 78 MLEVTSLDDVGRAYDRV----RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRTV 135 (154)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceEc
Confidence 999988544 45555 99999999888877665678899999999999998775443
No 49
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.72 E-value=5.2e-16 Score=120.35 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=87.6
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
+.+.+|+|+.|.|+|++++.+||+++|||++......+.......|+........ +.+..... ....++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHD--VAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCcee--EEEecCCC----CCCCCceEEEE
Confidence 4689999999999999999999999999998765433333233456654332222 22222111 11236789999
Q ss_pred EeCC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|+++...|.....+...++|++||+|++|||++..
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9985 5588899999999986665554443433589999999999999874
No 50
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.72 E-value=5.2e-16 Score=118.91 Aligned_cols=123 Identities=19% Similarity=0.307 Sum_probs=88.6
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccC---CCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (291)
...++|+||.|.|+|++++.+||+++|||++......+ +.....+++..+.... .+.+... ..+.++.|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~------~~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEG------PGPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcC------CCCceeEE
Confidence 35689999999999999999999999999987653322 1133456665532222 2223222 11357899
Q ss_pred EEEEeCCHH---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 96 FAIATEDVY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 96 i~~~v~di~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+||.|+|++ +++++|+++|+++..++...+.+....+|++||+|++|||.....
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 999998755 689999999999877665555444445999999999999987763
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.71 E-value=7.8e-17 Score=119.31 Aligned_cols=120 Identities=28% Similarity=0.440 Sum_probs=83.8
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEecc--CCCceEEEEEecCCCCcceEEEeeecCCCccccC---CCCceEEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV--PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI---GTGFGHFA 97 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~i~ 97 (291)
+|+||+|.|+|++++.+||+++|||++...... ........++..++ ..+.+............. +.+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999987662 22233445555443 333333333222111111 01345666
Q ss_pred EEe---CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 022835 98 IAT---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v---~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+.+ +|+++++++|+++|+++..++.....+....+|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 57889999999999999888776777666656899999999997
No 52
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=4.4e-16 Score=114.33 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=81.1
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeee----cCCCccccCCCCceEEE
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY----NYGVTSYDIGTGFGHFA 97 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~i~ 97 (291)
+++.|+.|.|+|++++.+||+++|||++..... . . ..+. + . +.+.... .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~--~~~~-~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N--VTFE-G--G--FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e--EEEe-c--c--ceeccchhhhccCCcccccccCCceEEE
Confidence 478999999999999999999999999864321 1 1 1111 1 1 1111100 00011112334567999
Q ss_pred EEeCCHHHHHHHHHHcCC-eeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 98 IATEDVYKLVENIRAKGG-NVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~di~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|.|+|+++++++|+++|. ++..+|...++|.+. ++|+|||||+|||.++
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 999999999999999985 677888888887665 8999999999999875
No 53
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.70 E-value=2.3e-16 Score=117.08 Aligned_cols=119 Identities=23% Similarity=0.355 Sum_probs=83.2
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCcc-c---c--ccCcceeeE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-E---Y--TKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~--~~~~~~~h~ 226 (291)
+++|+.+.|+|++++.+||+++|||+........+.....+++..+ ...+++....... . + ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999987653322223344555432 2345554321111 1 0 124577899
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccC-CccCCCCCceEEEE--ECCCCceEEEec
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGPIPGLNTKITSF--VDPDGWKTVLVD 280 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~-p~~~~~~~~~~~~~--~DPdG~~ie~~~ 280 (291)
+|.|+|++++.+++ +++|+++..+ |...++ +.+..|+ +||||+.|||+|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999 9999998875 443333 3455566 799999999975
No 54
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.70 E-value=4e-16 Score=113.40 Aligned_cols=114 Identities=25% Similarity=0.263 Sum_probs=82.8
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecch
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~ 233 (291)
+.|+.|.|+|++++++||+++||+++..... .+..+ .++..++ ...+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999875542 12223 3333222 1122222211111 1234668999999999
Q ss_pred HHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+++.+++ +++|+++..+|...++ +++.+|++|||||.|+|++
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999 9999999988887664 4589999999999999975
No 55
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.70 E-value=1.2e-15 Score=113.76 Aligned_cols=116 Identities=27% Similarity=0.386 Sum_probs=86.2
Q ss_pred EEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHH
Q 022835 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 25 ~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~ 104 (291)
+||.|.|+|++++.+||+++||+++......+ +....+|+..++. ...+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987665433 3334566665432 2233333321 1457889999998875
Q ss_pred ---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 105 ---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+++++|+++|+++...+...+.+...+++|+||+|++|||.+...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 788999999999887665555444445899999999999998764
No 56
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=9.2e-16 Score=112.07 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=82.7
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCc--cccCCCCceEEEEEeCCH
Q 022835 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 26 hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~v~di 103 (291)
||.|.|.|++++.+||+++|||++..+..... ......+....+ ....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654222 222233332211 13344444332221 112345678999999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|+++|+++..++...+++ ..++++||+|++|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999998877444443 34899999999999975
No 57
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.69 E-value=1.3e-15 Score=110.64 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=81.8
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCH
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di 103 (291)
+.|+.|.|+|++++.+||+++||+++..... +... .+++..++ . ..+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~--~~~~~~~~-~--~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGD--YAVFSTGG-G--AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCc--eEEEEeCC-c--cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865442 1222 23444332 1 112222111111 1234567899999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|+++|+++..++...+++.. .++++||+|+.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGR-FAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEE-EEEEECCCCCEEEeEC
Confidence 99999999999998888877775554 5999999999999975
No 58
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=1.6e-15 Score=111.51 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=82.0
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
+.+.+|+|+.|.|+|++++.+||+++|||++..+.. . ..++..++......+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~--~----~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG--Q----SVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC--C----eEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 458899999999999999999999999999876532 1 24454322212233333322 1347889999
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+ ++++++++++++|+++...+.....+ . .+||+||+||.+|+....
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~-~-~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGHG-K-AYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCCc-c-eEEEECCCCCEEEEEEec
Confidence 996 58899999999999864332222223 2 489999999999998754
No 59
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=9.8e-16 Score=112.98 Aligned_cols=118 Identities=30% Similarity=0.508 Sum_probs=83.7
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC---ccccCCCCceEEE
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV---TSYDIGTGFGHFA 97 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~i~ 97 (291)
+++|+|+.|.|+|++++.+||+++|||+........ . ..++..++ . .+.+...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS--Q--KINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC--E--EEEEecCCCccCcCccCCCCCCceEE
Confidence 468999999999999999999999999987653321 1 23344332 2 2333322111 1222456789999
Q ss_pred EEeCC-HHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEEE
Q 022835 98 IATED-VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d-i~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~~ 146 (291)
|.+++ +++++++|+++|+++...+....+ +....++|+||+|+++|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99974 999999999999998776654332 22234899999999999986
No 60
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=2.3e-15 Score=110.77 Aligned_cols=117 Identities=22% Similarity=0.283 Sum_probs=84.3
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCc--cccCCCCceEEEEEeCCHH
Q 022835 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 27 v~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~v~di~ 104 (291)
-.|.|+|++++.+||+++||+++......+.+......+.+++ ..+.+......... ....+.+..+++|.|+|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHH
Confidence 4688999999999999999999987654334433334455442 22333221111111 0123346679999999999
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++++++++|+++..++...++|.+. ++++||+||+|+|.+
T Consensus 81 ~~~~~l~~~G~~v~~~~~~~~~g~~~-~~~~DPdG~~~~l~~ 121 (122)
T cd08355 81 AHYERARAAGAEILREPTDTPYGSRE-FTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHCCCEEeeCccccCCCcEE-EEEECCCCCEEEEec
Confidence 99999999999999888888888665 889999999999964
No 61
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.69 E-value=9e-16 Score=114.39 Aligned_cols=114 Identities=23% Similarity=0.386 Sum_probs=80.5
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeC--
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE-- 101 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~-- 101 (291)
|+||.|.|+|++++.+||+++|||++..... . ..++..+ +. .+.+.............++.|+||.|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~--~~~~~~~--~~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----K--TAYFTIG--GT--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----c--cceEeeC--ce--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 1 2334443 22 233332222111122346789999997
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++++++++|+++|+.+..++....++.+. +||+||+||+|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~-~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKS-IYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceE-EEEECCCCCEEEEecCc
Confidence 49999999999999976554444344444 89999999999999876
No 62
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=2.3e-15 Score=112.23 Aligned_cols=120 Identities=20% Similarity=0.253 Sum_probs=81.7
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCc-eEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
|+.+|+||.|.|+|++++.+||+++||++...+....... ....++..+ . ..+.+...... ...++.|+||
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~--~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG--G--LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC--C--eEEEEecCCCC----CCCCceEEEE
Confidence 4789999999999999999999999999876553221100 001122222 1 12333322111 1236789999
Q ss_pred EeC--CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 99 ATE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~--di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+ ++++++++|+++|+.+..+. ....+....+||+||+||.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 997 79999999999999876432 33333334599999999999998754
No 63
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=9.2e-16 Score=113.26 Aligned_cols=114 Identities=13% Similarity=0.184 Sum_probs=82.4
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 99 (291)
++.+|.||.|.|+|++++.+||+++|||++..+.. ...|+..++. +..+.+.... ++..|++|.
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEE
Confidence 58899999999999999999999999999864421 1356655432 2223333211 355789999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCccCC--CCceEEEEEECCCCCEEEEEEcCC
Q 022835 100 TED---VYKLVENIRAKGGNVTREPGPLK--GGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 100 v~d---i~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
|++ +++++++++++|+++...+.... .+...++||+|||||.||+.....
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 975 99999999999998766443211 222334789999999999987653
No 64
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=5.1e-16 Score=119.12 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=81.2
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-cccCcceeeEEEEec
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~f~v~ 231 (291)
+++|++|.|+|++++.+||+++|||++..+.. + .+.+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47899999999999999999999999876543 1 222222211 1245566644322111 112347889999999
Q ss_pred c---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
| ++++.+++ +++|+++.. +...+ ..+++||+||||++|||+.+.
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~~-~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVSG-IVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCccc-ccccc--cEEEEEEECCCCcEEEEEECC
Confidence 8 66666666 999998643 33333 357899999999999999876
No 65
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2e-15 Score=111.53 Aligned_cols=117 Identities=23% Similarity=0.330 Sum_probs=81.2
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeee---c---CCC--ccccCCCCceE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY---N---YGV--TSYDIGTGFGH 95 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~---~~~--~~~~~~~~~~~ 95 (291)
+.|+.|.|+|++++.+||+++|||+...... ...+ ..+..+ ...+.+.... . ... .......+..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999865422 2112 112211 1122121111 0 000 11112234568
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++|.|+|+++++++++++|+++..++...++|... ++++||+||.++|+++
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTV-AYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEE-EEEECCCCCEEEEecC
Confidence 99999999999999999999998888888888764 8899999999999874
No 66
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.68 E-value=1.1e-15 Score=115.29 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=83.1
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|+|++++.+||+++||+++..+.. ...++..+ +..+.+......+....+.+..|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999875421 12233321 23344432211111122346789999997
Q ss_pred --chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 232 --DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 --d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
|++++++++ +++|+++...|...+. +++.+||+|||||+|||.+..
T Consensus 73 ~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 888888888 9999998877766554 468999999999999997653
No 67
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.68 E-value=1e-15 Score=115.91 Aligned_cols=118 Identities=17% Similarity=0.292 Sum_probs=83.8
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|.|++++++||+++|||++..+.. + ...++..+.. ...+.+... ..++..|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 478999999999999999999999999865421 1 1233443322 233444321 1247889999999
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhh
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~ 284 (291)
|++++.+.+ ++++++|+++...|.....+..+++||+||+||+|||++....
T Consensus 69 d~~~l~~~~-~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 69 SIDEVMRGI-GRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred CHHHHHHHH-HHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 977765322 4449999999877765443345778999999999999987554
No 68
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=9.7e-16 Score=111.95 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=83.7
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc--cccCcceeeEEEEecch
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDDV 233 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~f~v~d~ 233 (291)
|+.|.|.|++++.+||+++|||++..+....+ +..++.+...+. ....+.+........ ...+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999887654222 233444442221 133444433222111 12334678999999999
Q ss_pred HHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+++.+++ +++|+++..+|...++ ++.+|++||+|++|||++
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 9999999 9999999988744433 589999999999999975
No 69
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=1.5e-15 Score=113.32 Aligned_cols=118 Identities=25% Similarity=0.296 Sum_probs=84.8
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchH
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~ 234 (291)
+|+.|.|+|++++++||+++||+++......+ +.....++..++. ...+.+.... ..++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 58999999999999999999999987654322 2223334443221 2334443311 1458899999999864
Q ss_pred ---HHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhH
Q 022835 235 ---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~ 285 (291)
++.+++ +++|+++..+|...+.+..+++||+||||++|||++..+..
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 121 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYRI 121 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCccc
Confidence 444555 99999998888766654568899999999999999887654
No 70
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.67 E-value=3.8e-15 Score=115.00 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=80.1
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~ 101 (291)
++|+||.|.|+|++++.+||+++|||++......+.......++..++. ...+.+... .+.++.|+||.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEecC-------CCCceeEEEEEcC
Confidence 6899999999999999999999999998654433233333445543221 122222221 2347889999997
Q ss_pred C---HHHHHHHHHHcCCee--ecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 D---VYKLVENIRAKGGNV--TREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---i~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.. ...|.....+...++||+||+||.|||++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 5 778889999999863 2223222212233489999999999998755
No 71
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.67 E-value=2e-15 Score=110.99 Aligned_cols=116 Identities=25% Similarity=0.306 Sum_probs=81.7
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 99 (291)
+++++.|+.|.|+|++++.+||+++|||++..... . ..++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD---D---RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC---C---eEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 36899999999999999999999999999865421 1 23343211112222333221 12468899999
Q ss_pred e---CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 100 T---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v---~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++++++++|+++...|.....+....+|+.||+|++||++...
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 8 579999999999999987654333333323489999999999998754
No 72
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.67 E-value=1.5e-15 Score=111.69 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=77.0
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
..++.|+.|.|+|++++.+||+++||+++..+.. . ..++...+......+.+.. ...++..|++|.|
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 4578999999999999999999999999876532 1 1223221211233344422 1134789999999
Q ss_pred cc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 231 DD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+| ++++.+++ +++|+++...+.... .+..+||+|||||+||++...
T Consensus 71 ~~~~~v~~~~~~l----~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 71 SSPEALERRVAAL----EASGLGIGWIEGDPG--HGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CCHHHHHHHHHHH----HHcCCccccccCCCC--CcceEEEECCCCCEEEEEEec
Confidence 86 44555555 999998754333222 246789999999999998643
No 73
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=2.8e-15 Score=110.78 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=80.7
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCC-ceEEEEEecCCCCcceEEEeeecCCCcc--ccCCCCceEEEEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNYGVTS--YDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~~ 99 (291)
+|+||.|.|.|++++.+||+++|||+...+....+. .....++..........+.+........ .....+..|+||.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 578999999999999999999999998776543221 1122333322111223344443322111 1223467899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
|+ ++++++++++++|+++..++.. ++. ..++|+||+|++|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FGE-RSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cce-EEEEEECCCCCEEEeC
Confidence 97 5799999999999997654332 333 3489999999999984
No 74
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.67 E-value=1.2e-15 Score=113.68 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=79.3
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecc-
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD- 232 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d- 232 (291)
++|+.|.|+|++++.+||+++||+++.... +. .. .+..+ +..+.+....+.+......++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~~-~~--~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---EK-TA--YFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---Cc-cc--eEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 589999999999999999999999976431 11 11 12221 234444332221111123467899999985
Q ss_pred -hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 233 -VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 233 -~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
++++.+++ +++|+++..+|..... +.+.+||+|||||+|||.+...
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcH
Confidence 77777777 9999998765544333 3588999999999999988764
No 75
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.67 E-value=2.3e-15 Score=116.76 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=83.0
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
..+++|+.|.|+|++++.+||+++|||++........+.....++...+ ....+.+..... ....+++|++|.|
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~~----~~~~~~~hiaf~v 77 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDPA----GARGRLHHLAYAL 77 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCCC----CCCCCceEEEEEC
Confidence 3478999999999999999999999999876643332222223343322 122333322111 1223679999999
Q ss_pred cchH---HHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 231 DDVY---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~d~~---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
+|.+ ++.+++ ++.|+++...|..+......++|++|||||+|||++.
T Consensus 78 ~~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 78 DTREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CCHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9744 444555 9999998877776554344579999999999999987
No 76
>PRK06724 hypothetical protein; Provisional
Probab=99.67 E-value=3.8e-15 Score=110.18 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=77.7
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhcc---CCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (291)
.+..+|+||.|.|+|++++.+||+++| |++........ .+...+ .+...... .....+..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~------------~g~~~l--~l~~~~~~--~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYS------------TGESEI--YFKEVDEE--IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeee------------CCCeeE--EEecCCcc--ccCCCCcee
Confidence 367899999999999999999999966 66653211111 111111 11111100 112346789
Q ss_pred EEEEe---CCHHHHHHHHHHcCCeeecCCccCC---CCceEEEEEECCCCCEEEEEEcC
Q 022835 96 FAIAT---EDVYKLVENIRAKGGNVTREPGPLK---GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 96 i~~~v---~di~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+||.| +++++++++|+++|+++..+|...+ +|. ..++|+||||+.|||...+
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~-~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGY-YTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCE-EEEEEECCCCCEEEEEeCC
Confidence 99998 7899999999999999877765543 333 3488999999999998764
No 77
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=6.4e-15 Score=108.83 Aligned_cols=117 Identities=26% Similarity=0.398 Sum_probs=84.2
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC-ccccCCCCceEEEEEe
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIAT 100 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~~~v 100 (291)
++|+||.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 589999999999999999999999999976522 135555433 2333444443322 1223445788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 101 ~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
. ++++++++|+++|+++..+. ..+.+ ..+||+||+||++||....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~~-~~~~~--~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGAS-DHLVS--EALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceeccc-cccce--eEEEEECCCCCEEEEEEecC
Confidence 6 58999999999999875432 22332 34899999999999987764
No 78
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.66 E-value=4e-16 Score=115.48 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=78.3
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecC--CCcceeEEEecccccccceeEeeccccCcccccc---CcceeeEE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDK--PEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK---GNAYAQVA 227 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~h~~ 227 (291)
+++|+++.|.|++++.+||+++||+++...... .........+..+. ....+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 478999999999999999999999999987651 22223334444322 222222222111111111 01345666
Q ss_pred EEecc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEE
Q 022835 228 ISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 f~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~ 278 (291)
|.+.+ ++++.++| ++.|+++..+|.........++||+||+|++|||
T Consensus 79 ~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 66665 55555555 9999999999887766555667899999999997
No 79
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=5.5e-15 Score=108.98 Aligned_cols=112 Identities=19% Similarity=0.310 Sum_probs=80.5
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 99 (291)
|..++.|+.|.|+|++++.+||+++|||+..... +. ..++..++ . ..+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~-~--~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GP--FAVVKLDN-G--VSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CC--EEEEEcCC-C--cEEEEecCC------CCCCcceEEEE
Confidence 3578999999999999999999999999986522 11 12233222 2 234333321 11245789988
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCccC-------CCCceEEEEEECCCCCEEEEEEc
Q 022835 100 TE--DVYKLVENIRAKGGNVTREPGPL-------KGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 100 v~--di~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++ |+++++++|+++|+++...|... .+|.+ .++|+||+||.|||++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGR-GVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCee-EEEEECCCCCEEEEEec
Confidence 86 69999999999999987665443 34444 49999999999999986
No 80
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.66 E-value=4.8e-15 Score=112.16 Aligned_cols=114 Identities=20% Similarity=0.407 Sum_probs=82.8
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~ 101 (291)
.+++||.|.|+|++++.+||+++|||++..... . ...|+..++... .+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 489999999999999999999999999864422 1 235665543322 2333221 1246889999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 di~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
|++++. ++|+++|+++...+.....+...++||+||+|+.+||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 887765 899999999876554333333345899999999999998864
No 81
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=5.2e-15 Score=113.52 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=82.2
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCcc-ccCCCCceEEEEEeC
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATE 101 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i~~~v~ 101 (291)
+|+||.|.|+|++++.+||+++|||++..+.. . ...+...+. ..+..+.+........ .....++.|+||.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57999999999999999999999999876543 1 233333221 2234455544322211 122346889999998
Q ss_pred C---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 D---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.+.. +.... ....+||+||+|+.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-ccccc--cEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999997543 22222 234589999999999999876
No 82
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=1.6e-15 Score=111.35 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=79.7
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeecc----ccCccccccCcceeeEEE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTY----NYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~h~~f 228 (291)
++.++.|.|.|++++.+||+++||+++..... . . .. +.. +..+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~-~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VT-FEG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EE-Eec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 57889999999999999999999999764321 1 1 11 110 11111100 000111122345689999
Q ss_pred EecchHHHHHHHHHHHHHhCC-eeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 229 STDDVYKSAEVVNLVTQELGG-KITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~-~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
.|+|++++++++ +++|+ +++.+|...++ +.+.+||+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 99986 78888887776 46899999999999999875
No 83
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.66 E-value=5e-15 Score=108.03 Aligned_cols=112 Identities=26% Similarity=0.437 Sum_probs=84.9
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~ 101 (291)
++++|+.|.|+|++++.+||+++|||++..... ...++..+. ...+.+.+.... ..+..|++|.|.
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 579999999999999999999999999876542 135555442 223334343321 246789999996
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++++++++++++|+++...+...+++... +++.||+|+++|++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGRG-LRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCceE-EEEECCCCCEEEEEEcc
Confidence 68999999999999988776555554444 89999999999998764
No 84
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.66 E-value=1.7e-15 Score=109.60 Aligned_cols=113 Identities=26% Similarity=0.338 Sum_probs=80.2
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCcc-ccCCCCceEEEEEeCC
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED 102 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~i~~~v~d 102 (291)
|+|+.|.|+|++++.+||+++||+++..+...+ ....++..++. ..+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 589999999999999999999999986543322 12345554432 1233332221111 1233467899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 022835 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 103 i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+++++++++++|+++..++.. .++.. .+++.||+|+++||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998876654 33444 38999999999986
No 85
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=5e-15 Score=108.97 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=82.4
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc----cccCcceeeEEEEec
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YTKGNAYAQVAISTD 231 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~v~ 231 (291)
...|.|+|++++.+||+++||+++.......++......+..++ ..+.+........ ....++..|++|.|+
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVD 77 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEEC
Confidence 35689999999999999999999887653333332222333221 2233322111111 112346789999999
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
|++++.+++ +++|+++..+|...++ +.+.++++|||||+|+|.++
T Consensus 78 d~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 78 DVDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred CHHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEecC
Confidence 999999999 9999999988887775 46889999999999999753
No 86
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=5e-15 Score=108.43 Aligned_cols=111 Identities=22% Similarity=0.255 Sum_probs=79.5
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC--c---cccCCCCceEEEEEe
Q 022835 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--T---SYDIGTGFGHFAIAT 100 (291)
Q Consensus 26 hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~--~---~~~~~~~~~~i~~~v 100 (291)
+..|.|+|++++.+||+++|||++..... . ...+..++. .+.+.+...... . ....+.+ .|++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----W--YVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----c--EEEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEEE
Confidence 67899999999999999999999875421 1 233333222 233333322111 1 1112333 4899999
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|+++++++++++|+++..++...++|.+. ++++||+|++|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWGQRH-FIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCcceE-EEEECCCCCEEEEEC
Confidence 999999999999999988888777777554 889999999999985
No 87
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.65 E-value=7e-15 Score=108.05 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=84.6
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC--ccccCCCCceEEEEEeCCHH
Q 022835 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--TSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 27 v~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~i~~~v~di~ 104 (291)
..|.|+|++++.+||+++||+++......+.+......+..++ . .+.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD--S--VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC--E--EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4688999999999999999999987755444444444455443 2 2333321111 11123446779999999999
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++.+.|+++..++...++|.+. ++++||+|++|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDRY-GGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccceE-EEEECCCCCEEEEec
Confidence 99999999999998888777777654 899999999999986
No 88
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=3.2e-15 Score=110.22 Aligned_cols=118 Identities=22% Similarity=0.327 Sum_probs=82.8
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCc---cccccCcceeeEEE
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV---TEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~h~~f 228 (291)
.++.|+.|.|+|++++++||+++||++...+.... .+.. +..++ ..+.+...... .....+.+..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~--~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKA--LRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceE--EEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 46899999999999999999999999987653211 1222 22211 33444322111 11123457899999
Q ss_pred Eecc-hHHHHHHHHHHHHHhCCeeccCCccCCC--CCceEEEEECCCCceEEEecc
Q 022835 229 STDD-VYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~d-~~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~ie~~~~ 281 (291)
.+++ ++++.+++ .++|+++...|....+ ..++.+||+||||++||+++.
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 9985 88888888 9999999887765432 235789999999999999873
No 89
>PRK06724 hypothetical protein; Provisional
Probab=99.65 E-value=2.4e-15 Score=111.30 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=74.4
Q ss_pred CCceeEeeeeCCchhcHHHHHHhh---CCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEE
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f 228 (291)
.+++|+.|.|+|++++.+||+++| |+++........+...+++... .. ......+..|++|
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g~~~l~l~~~--------------~~--~~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTGESEIYFKEV--------------DE--EIVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCCCeeEEEecC--------------Cc--cccCCCCceeEEE
Confidence 469999999999999999999966 6665322111111111211110 00 0011346789999
Q ss_pred Ee---cchHHHHHHHHHHHHHhCCeeccCCccCCC--CCceEEEEECCCCceEEEecch
Q 022835 229 ST---DDVYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 229 ~v---~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
.| ++++++.+++ +++|+++..+|...+. .+.+.+||+|||||.|||+..+
T Consensus 70 ~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 70 QAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred ecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 98 5677777777 9999999888865442 3347889999999999997653
No 90
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=4.8e-15 Score=109.84 Aligned_cols=118 Identities=28% Similarity=0.487 Sum_probs=83.6
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccC-CCceEEEEEecCCCCcceEEEeeecCC-Ccc-----ccCCCCceEE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYG-VTS-----YDIGTGFGHF 96 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~-----~~~~~~~~~i 96 (291)
|+||.|.|+|++++.+||+++|||+.......+ ......+++..+ . ..+.+..+.. ... ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~--~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG--N--VQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC--C--EEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 233445666542 2 3333433221 111 1246789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECC-C--CCEEEEEE
Q 022835 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDP-D--GYIFELIQ 146 (291)
Q Consensus 97 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp-~--G~~iel~~ 146 (291)
+|.|+|+++++++++++|+++..++.....+... +++.|| + |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKR-VAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCE-EEEEecCCCceEEEEecC
Confidence 9999999999999999999988877633444444 455555 4 99999975
No 91
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.65 E-value=4.9e-15 Score=108.74 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=80.7
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~ 101 (291)
.++.||.|.|+|++++.+||+++|||++..+.. . ...++..++ .++.+.+.... ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDD--RAWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccC--CceEEEEEeCC-------CCceeEEEEEEC
Confidence 378999999999999999999999998854321 1 134555432 23444443321 236779999996
Q ss_pred ---CHHHHHHHHHHcCCeeecCCcc--CCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 ---DVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---di~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+++++++|+++|+++...+.. ...+...+++|+|||||.|||+...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 5889999999999998754421 1222233589999999999998765
No 92
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=1.2e-14 Score=107.91 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=82.6
Q ss_pred eeEEEEEEeCCHHHHHHHHHhcc---CCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCcc--c-cCCCCceEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS--Y-DIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~-~~~~~~~~i 96 (291)
+|+||.|.|+|++++.+||+++| ||++..... .. ..|... .+ ...+.+.......+ . ..+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~-~~--~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG-DG--GTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec-CC--ceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999876542 11 123322 12 23344443322211 1 234578899
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCccC--CCCceEEEEEECCCCCEEEEEEc
Q 022835 97 AIATE---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~---di~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
||.|+ |+++++++|+++|+.+...+... ..+....+|++||+|+++||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99996 58999999999999988876542 22233458999999999999864
No 93
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.65 E-value=1.1e-14 Score=105.74 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=80.4
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
+++++||.|.|+|++++.+||++ |||+...+.. . ..|+..++. ....+.+... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGT-DPFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCC-ccEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 9999865432 1 245543222 2232222111 124678999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+|.+++.+.+++.|......+. .+++.. .++|+||+||.|||+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEecc
Confidence 9999999999999998765432 445444 489999999999998653
No 94
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=4.5e-15 Score=110.63 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=78.1
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCc--ceeEEEecccccccceeEeeccccCccccccCcceeeEEEE
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~ 229 (291)
.+++|+.|.|+|++++.+||+++||+++..+...... ....++. .+ +..+.+..... ...++.+|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IG----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cC----CeEEEEecCCC----CCCCCceEEEEE
Confidence 4689999999999999999999999987654321110 0011111 11 23455542211 112368999999
Q ss_pred ec--chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 230 TD--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 230 v~--d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
|+ +++++.++| +++|+++..++.. ..+.++.+||+|||||.|||....
T Consensus 74 v~~~~ld~~~~~l----~~~gv~~~~~~~~-~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERI----KALGVEMKPPRPR-VQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHH----HHCCCEEecCCcc-ccCCceEEEEECCCCCEEEEecCC
Confidence 98 566666666 9999987644332 222468999999999999998653
No 95
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.65 E-value=2e-15 Score=110.90 Aligned_cols=114 Identities=25% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|+|++++.+||+++||+++..... .. +++..........+.+.. ...++..|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 478999999999999999999999999875421 11 223211111123333322 11247899999995
Q ss_pred ---chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 232 ---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
|++++.+++ +++|+++...|.....+..+++|+.|||||+||++...
T Consensus 70 ~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 556666666 99999987765443333357899999999999998764
No 96
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=5.8e-15 Score=109.55 Aligned_cols=117 Identities=25% Similarity=0.275 Sum_probs=82.3
Q ss_pred CceeEeeeeCCchhcHHHHHHhh---CCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc---cccCcceeeE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~ 226 (291)
+++|+.|.|.|++++.+||+++| ||++..+.. + ...+... ..+..+.+.......+ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 999876542 1 1122211 1234555544322211 1234578899
Q ss_pred EEEecc---hHHHHHHHHHHHHHhCCeeccCCccC--CCCCceEEEEECCCCceEEEecc
Q 022835 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 227 ~f~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
+|.|+| ++++.+++ +++|+++...+... ...+.+++|++||||++|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999975 66666666 99999998877753 22346889999999999999864
No 97
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=8.9e-15 Score=110.16 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=82.4
Q ss_pred EEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCH-
Q 022835 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV- 103 (291)
Q Consensus 25 ~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di- 103 (291)
.||.|.|+|++++.+||+++|||++..+.. . ..+|+.......+..+.+... ...++.|+||.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 499999999999999999999999876532 1 346665332222233322211 235899999999764
Q ss_pred --HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC
Q 022835 104 --YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 104 --~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
++++++|+++|+++...|...+.+....+||+||+|+.|||......
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~ 117 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEE 117 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcce
Confidence 57799999999998766655443444458999999999999887643
No 98
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=3.6e-15 Score=110.13 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=78.9
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCc-ceeEEEecccccccceeEeeccccCccc--cccCcceeeEEEE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-KYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~f~ 229 (291)
+++|+.|.|.|++++.+||+++|||++.......+. .....++.......+..+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 378999999999999999999999998766442221 1122223221111234455543322111 1122367899999
Q ss_pred ecc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 230 TDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
|+| ++++.+++ +++|+++...+.. . +.+.+||+||+|++|||+
T Consensus 81 v~~~~~~~~~~~~~----~~~g~~~~~~~~~-~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERL----RAAGVPVSGVVDH-F--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHH----HHcCCcccceEee-c--ceEEEEEECCCCCEEEeC
Confidence 996 45555555 9999998764433 2 368899999999999985
No 99
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.64 E-value=1.1e-14 Score=106.69 Aligned_cols=113 Identities=25% Similarity=0.361 Sum_probs=82.0
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
+.+|+|+.|.|+|++++++||+++|||+...... . ..++..++ .....+.+... ...+..|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATG-SEHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCC-CccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999864422 1 24454322 22233333221 123567999999
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCcc--CCCCceEEEEEECCCCCEEEEEEcC
Q 022835 101 ---EDVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ---~di~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+++++++++|+++|+++..++.. .+++.. .++|+||+||.+||+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 57899999999999998766532 344444 489999999999998765
No 100
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=4.5e-15 Score=109.97 Aligned_cols=118 Identities=24% Similarity=0.357 Sum_probs=84.5
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCC-CcceeEEEecccccccceeEeeccccCcc-c-----cccCcceeeE
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVT-E-----YTKGNAYAQV 226 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-----~~~~~~~~h~ 226 (291)
++|+.|.|+|++++.+||+++|||++....... +.....+++..+ +..+++....... . ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987665432 233445555532 3445554432211 1 1235688999
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCC---CceEEEec
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD---GWKTVLVD 280 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPd---G~~ie~~~ 280 (291)
+|.|+|++++++++ +++|+++..+|...+.+ ++.+++.||+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 99999999999999 99999998887754443 3555555555 99999985
No 101
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=5.9e-15 Score=109.00 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=79.1
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeecccc--------C--ccccccCcce
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY--------G--VTEYTKGNAY 223 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~~~ 223 (291)
+.|+.|.|+|++++.+||+++|||++..... ...+.. +..+ ...+.+.... . .......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4789999999999999999999999764322 111211 1110 1111111000 0 0011112344
Q ss_pred eeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
.|++|.|+|++++.+++ +++|++++.+|...++ +.+.++++|||||+|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 79999999999999999 9999999988887776 45788999999999999874
No 102
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.64 E-value=2.9e-15 Score=108.34 Aligned_cols=113 Identities=24% Similarity=0.147 Sum_probs=79.8
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-cccCcceeeEEEEecc
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~f~v~d 232 (291)
++|+.|.|+|++++.+||+++||+++..+..... .. .++..++ ...+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~--~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-PG--AWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-Cc--eEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 5799999999999999999999999775532221 11 2232222 12344433222111 1123467899999999
Q ss_pred hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEE
Q 022835 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~ 278 (291)
++++++++ +++|+++..++... .+.+.+||+||+|++|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVPG--DGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCCC--CCccEEEEECCCCCEEeC
Confidence 99999999 99999998877652 235789999999999996
No 103
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.63 E-value=5.3e-15 Score=109.04 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=79.9
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|+|++++.+||+++||+++.... +.+....+. + +..+.+... ....+..|++|.|+
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeC
Confidence 36799999999999999999999999976521 112222222 1 233444321 11235689999886
Q ss_pred --chHHHHHHHHHHHHHhCCeeccCCccC------CCCCceEEEEECCCCceEEEecch
Q 022835 232 --DVYKSAEVVNLVTQELGGKITRQPGPI------PGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 --d~~~~~~~l~~~~~~~G~~~~~~p~~~------~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
|++++.+++ +++|+++..+|... ...+++++||+|||||+|||++++
T Consensus 68 ~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 68 EEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 578888888 99999987776543 123569999999999999999873
No 104
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.63 E-value=3.9e-15 Score=109.27 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=78.2
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecc
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d 232 (291)
++.|+.|.|+|++++.+||+++|||++..+.. .. ..++..++ .+..+.+... ..++..|++|.|++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DG--ALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---CC--eEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 58899999999999999999999999765421 11 22333222 2344444321 12467899999976
Q ss_pred ---hHHHHHHHHHHHHHhCCeeccCCccC--CCCCceEEEEECCCCceEEEecch
Q 022835 233 ---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 ---~~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+++.+++| +++|+++...|... ..+.++++||+|||||+||++...
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 66666666 99999988765321 222357899999999999998653
No 105
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=9.3e-15 Score=107.95 Aligned_cols=116 Identities=22% Similarity=0.313 Sum_probs=80.3
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCc-cccccCcceeeEEEEec
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~f~v~ 231 (291)
++.|+.|.|+|++++.+||+++|||++.... + ..+.+..++ ....+.+...... .......+..|++|.|+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 6899999999999999999999999987652 1 123344222 2344555433221 11223347889999998
Q ss_pred c---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
+ ++++.+++ +++|+++.. +..++. .+.+||+|||||+|||....+
T Consensus 74 ~~~~v~~~~~~l----~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 74 SRADLAAALRRL----IELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CHHHHHHHHHHH----HHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 6 55555555 999998754 333333 478999999999999998765
No 106
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.62 E-value=1e-14 Score=104.87 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=75.5
Q ss_pred EEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHHHHH
Q 022835 29 YRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVE 108 (291)
Q Consensus 29 i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~~~~ 108 (291)
|.|+|++++.+||+++|||++..... .+ ..+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DY--VDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SE--EEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----Ce--EEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987433 11 22322211000011222111 122234578899999999999999
Q ss_pred HHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 109 NIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
+++++|+++..+|...++|... +++.||+||+|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQRS-FYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEEE-EEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeEE-EEEECCCCCEEEeC
Confidence 9999999998888888777554 89999999999986
No 107
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.62 E-value=4.1e-15 Score=109.79 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=77.8
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..+.. . ..++..+. .+..+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 468999999999999999999999999865421 1 22344322 2333434221 135689999998
Q ss_pred c---hHHHHHHHHHHHHHhCCeeccCCccCC--CCCceEEEEECCCCceEEEecch
Q 022835 232 D---VYKSAEVVNLVTQELGGKITRQPGPIP--GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
| ++++.+++ +++|+++..++.... ....+++||+|||||+||++..+
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 7 66666666 999999877654211 22357789999999999998654
No 108
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.62 E-value=3.7e-14 Score=106.10 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=82.5
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCC
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d 102 (291)
+|+||.|.|+|++++.+||+++|||++...... . ...++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998755331 1 234554431 12233434333222111234578899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC
Q 022835 103 VY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 103 i~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
++ +++++|.++|+++...+. . ++.+ .++++||+||++||+...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~-~~~~-~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H-GNAW-SIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C-Ccee-EEEEECCCCCEEEEEEcCCC
Confidence 55 688999999998776432 2 2233 48999999999999987753
No 109
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.62 E-value=2e-14 Score=105.55 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred EeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCcc--ccccCcceeeEEEEecchH
Q 022835 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~h~~f~v~d~~ 234 (291)
..|.|.|++++.+||+++||+++.......++......+..++ ..+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 4589999999999999999999887654333333333333222 234443221110 1112346789999999999
Q ss_pred HHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
++.+++ .++|+++..+|...++ +.+.++++||||++|+|.+.
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEecC
Confidence 999999 9999999988876655 46899999999999999863
No 110
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.62 E-value=1.7e-14 Score=107.97 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=79.6
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecc
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d 232 (291)
++.|+.|.|+|++++.+||+++||+++...... . ...++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999998755321 1 223333221 12334444332221111223478899999998
Q ss_pred hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
+++.. .+.+++.++|+++...+. .+ .++.+|++||+||+|||+...+
T Consensus 76 ~~~v~-~~~~~l~~~G~~~~~~~~-~~--~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLR-DLYERLRAAGITPVWPVD-HG--NAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHH-HHHHHHHHCCCCccccCC-CC--ceeEEEEECCCCCEEEEEEcCC
Confidence 55422 222334999998876543 22 2578999999999999997654
No 111
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.60 E-value=4.2e-14 Score=120.67 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=83.5
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCce-EEEEEecCCCCcceEEEeeecCCCccccCCCC-ceEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG-FGHF 96 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~i 96 (291)
+.+++|+||.|.|+|++++.+||+++|||++......+.+.. ...|+..+... + .+.+... ++.+ +.|+
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-------~~~g~~~Hi 211 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKA-H-DIAFVGD-------PEPGKLHHV 211 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCC-c-ccceecC-------CCCCceEEE
Confidence 457899999999999999999999999999866543333322 34455433211 1 1111111 1234 8899
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 97 AIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~d---i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
||.|+| +++++++|+++|+++..+|.....+...++||+||+|+++|+...
T Consensus 212 af~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 212 SFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 999986 556788999999998766654443333459999999999999843
No 112
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=2.4e-14 Score=104.79 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=78.7
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCcc----ccccCcceeeEEEEe
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----EYTKGNAYAQVAIST 230 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~h~~f~v 230 (291)
.+..|.|+|++++.+||+++|||++.... ..+ ..+..++ ....+.+....... .........|++|.|
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v 74 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPD--GGVELAFMLPGHETVPAAQYQFQGQGLILNFEV 74 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCC--CceEEEEccCCCCCCcchhcccCCceEEEEEEE
Confidence 36789999999999999999999977541 112 2222211 12333332211110 011112335999999
Q ss_pred cchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+|++++.+++ .++|+++..+|...++ +.+.++++||||++|||+|
T Consensus 75 ~did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 9999999999 9999998888877665 4688999999999999986
No 113
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.60 E-value=2.5e-14 Score=102.86 Aligned_cols=120 Identities=27% Similarity=0.335 Sum_probs=90.7
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
+..+.|..|.+.|++++.+||.++|||+..+.....+..+..+.... ....+ .+.- .. ....++..+++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~-~~~gG-~l~~--~~---~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG-AGAGG-GLMA--RP---GSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC-ccccc-eecc--CC---cCCCCCCCEEEEEec
Confidence 56789999999999999999999999998877555444444443332 11122 2211 11 111225678999999
Q ss_pred cchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+|++++++++ .++|++++.++...|+ .++.+.|.||.||+|.|.+..
T Consensus 80 ~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999 9999999999998885 479999999999999998753
No 114
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.60 E-value=2.1e-14 Score=104.73 Aligned_cols=111 Identities=23% Similarity=0.317 Sum_probs=79.9
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecc
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d 232 (291)
++.|+.|.|.|++++.+||+++|||++..... .. .++..+.. ....+.+... ...+..|++|.|.+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~--~~~~~~~~-~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GS--VYLRCSED-DHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----Ce--EEEecCCC-CcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 68999999999999999999999999876531 12 23332211 2233433221 12477999999985
Q ss_pred ---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 233 ---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 ---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
++++.+++ +++|+++...|...++ +++.+||+||+||+||++...
T Consensus 68 ~~~v~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 68 EEDLEALAAHL----EAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHH----HHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEcc
Confidence 55555555 9999999887764444 458899999999999998653
No 115
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=4.8e-14 Score=103.57 Aligned_cols=114 Identities=28% Similarity=0.465 Sum_probs=79.5
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCc------cccCCCCceEEE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT------SYDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~i~ 97 (291)
|.||.|.|+|++++.+||+++|||++... +.+. ..++..++. . .+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR-G--MLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC-c--EEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998754 1222 345555443 2 22222211110 111234778999
Q ss_pred EEe--CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 98 IAT--EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v--~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|.+ +|++++++++.++|+++..++. ..++... ++|+||+|+++||++.
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~~-~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGRS-LYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCeeE-EEEECCCCCEEEEecC
Confidence 998 5899999999999998876554 3344444 8999999999999863
No 116
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.59 E-value=7.2e-14 Score=101.16 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=78.0
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHHH
Q 022835 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (291)
Q Consensus 27 v~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~~ 106 (291)
..|.|+|++++.+||+++|||+.... .+ . ..++..++ .....+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 46889999999999999999998643 11 1 23333222 1123333332211 122456899999999999
Q ss_pred HHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 107 VENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 107 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+++|+++|+++..++...++|.+. +++.||+||.++|+++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWGVRR-FFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCceEE-EEEECCCCCEEEEEEc
Confidence 999999999988877777776554 8999999999999975
No 117
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=3.4e-14 Score=102.99 Aligned_cols=109 Identities=23% Similarity=0.413 Sum_probs=75.4
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe--CCH
Q 022835 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT--EDV 103 (291)
Q Consensus 26 hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v--~di 103 (291)
||.|.|+|++++.+||+++|||++..+.. . ..++..+ + ..+.+....... ..+.+..|++|.| +++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~--~--~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA--G--LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec--C--eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999865432 1 2333332 1 223332221111 1234678999999 579
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++++++++|+++.........+.. .++++||+|+++||+..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGR-SIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCce-EEEEECCCCCEEEEEeC
Confidence 99999999999997654332222333 48999999999999865
No 118
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=5.4e-14 Score=103.57 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=77.0
Q ss_pred eEEEEEEeCCHHHHHHHHHhc---cCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 24 FLHAVYRVGDLDRTIKFYTEC---FGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~---lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
+.||.|.|+|++++.+||+++ ||++...+. .+ . . .++..+.+...+. +........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~-~-~~~~~~~~~~~~~--l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G-A-VGYGKGGGGPDFW--VTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c-e-eEeccCCCCceEE--EeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999998 699886543 11 1 1 2232221222333 332221111 1222457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEE
Q 022835 101 ED---VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d---i~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~ 145 (291)
++ ++++++++.++|+.+...|...++ .....+||+||+||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998877665553 2333489999999999986
No 119
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.59 E-value=3.3e-14 Score=103.15 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=76.7
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|+|++++.+||++ |||++..+.. + .. ++...+. ....+.+ .. ...++..|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~---~~-~~~~~~~-~~~~~~~-~~------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D---EL-YYRGYGT-DPFVYVA-RK------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C---eE-EEecCCC-ccEEEEc-cc------CCcCcccEEEEEEC
Confidence 4689999999999999999999 9999865521 1 12 2332211 1222211 11 11247889999999
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
|.++..+.+ +.+|+.....+. .++ +++++||+|||||.|||+..
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 988888888 889998765443 333 35789999999999999754
No 120
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=2.2e-14 Score=103.98 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=73.9
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec--ch
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DV 233 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~--d~ 233 (291)
|+.+.|+|++++.+||+++||+++..+.. + ...+.++ +..+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~~~~~------~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAYFELA------GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeEEEec------CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999865431 1 1111111 2334443221111 12346789999995 56
Q ss_pred HHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
+++.+++ +++|+++...+...+. .++.+|++||||++|||+..
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 6777777 9999998754333222 35889999999999999853
No 121
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.59 E-value=1.5e-14 Score=103.92 Aligned_cols=108 Identities=26% Similarity=0.330 Sum_probs=75.4
Q ss_pred eeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHHH
Q 022835 159 LRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAE 238 (291)
Q Consensus 159 l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~~ 238 (291)
|.|+|++++.+||+++|||++..... .+..+..+ .........+..... ......+..|++|.|+|++++.+
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLG--FRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEET--EEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEec--cchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999887322 12222222 100011122222111 11234578999999999999999
Q ss_pred HHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 239 VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 239 ~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
++ +++|+++..+|...++ +.+.+++.|||||+|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 9999999888888666 468999999999999986
No 122
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.59 E-value=2.5e-14 Score=104.82 Aligned_cols=113 Identities=26% Similarity=0.321 Sum_probs=79.0
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.++.|+.|.|+|++++++||+++|||++..... ++. ++...+ .....+.+.. ...++..|++|.|+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIV--YLRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEE--EEECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 368999999999999999999999999764421 222 233222 1233344322 11236789999995
Q ss_pred ---chHHHHHHHHHHHHHhCCeeccCCccCC-CCCceEEEEECCCCceEEEecch
Q 022835 232 ---DVYKSAEVVNLVTQELGGKITRQPGPIP-GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---d~~~~~~~l~~~~~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+++++.+++ +++|+++..+|.... ..+++.+||+||+||+|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 566666666 999999887765322 22467899999999999998754
No 123
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.59 E-value=3.6e-14 Score=102.75 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=78.3
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHH
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~ 235 (291)
...|.|+|++++.+||+++|||+.... .+ ....+...+ ..+..+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 356899999999999999999997532 11 122232212 1233344432111 12345799999999999
Q ss_pred HHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 236 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
+.+++ +++|+++..+|...++ +.+.+|++||+||+|||+++
T Consensus 71 ~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 99999 9999999888776665 45789999999999999975
No 124
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.59 E-value=9.1e-14 Score=100.44 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=78.3
Q ss_pred EEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHHHH
Q 022835 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~~~ 107 (291)
.|.|+|++++.+||+++|||++..... ... ..++..+ . ..+.+......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~--~~~~~~~--~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPG--YAFLSRG--G--AQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCc--EEEEEeC--C--EEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999876543 122 2344322 2 23333332221111 3345668999999999999
Q ss_pred HHHHHcCCe-eecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 108 ENIRAKGGN-VTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 108 ~~l~~~G~~-~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|+. +..++...++|... ++++||+|+.|+|+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMRE-FAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEE-EEEECCCCCEEEecC
Confidence 999999998 56666666666554 889999999999975
No 125
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=4.5e-14 Score=103.73 Aligned_cols=109 Identities=28% Similarity=0.468 Sum_probs=78.0
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe--
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT-- 100 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v-- 100 (291)
+|.||.|.|+|++++.+||+++|||++..... . ..++..+ ...+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~--~~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG--DLWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC--CEEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 57999999999999999999999999865432 1 2344433 222223221111 1234678999988
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+|+++++++++++|+++..++.. .+ ..+||+||+||.+||.+..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~--~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG--DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc--cEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 22 2489999999999999765
No 126
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.58 E-value=5.4e-14 Score=103.43 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=76.7
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCC-----CccccCCCCceEEEE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-----VTSYDIGTGFGHFAI 98 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~i~~ 98 (291)
++||.|.|+|++++++||+. |||++...... . ..+.+..++ +..+. +..... ......+.+..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~--~~~~~~~~~-~~~l~--l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--E--PHVEAVLPG-GVRLA--WDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--C--CcEEEEeCC-CEEEE--EEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999976 99997543221 1 112233321 22222 211100 000112234567888
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 99 ~v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
.+. |+++++++|+++|+++..++...++|.+. ++|+||+||+|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRY-AIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEE-EEEECCCCCEEEEe
Confidence 764 89999999999999988888888887664 88999999999986
No 127
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.58 E-value=4.1e-14 Score=102.28 Aligned_cols=109 Identities=25% Similarity=0.266 Sum_probs=78.2
Q ss_pred eeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHH
Q 022835 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~ 237 (291)
.|.|+|++++.+||+++|||++..... .. ....+..+ +..+.+......... ...+..|++|.|+|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999876542 12 22333321 234444333222111 2346679999999999999
Q ss_pred HHHHHHHHHhCCe-eccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 238 EVVNLVTQELGGK-ITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 238 ~~l~~~~~~~G~~-~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+++ +++|++ +..++...++ +.+.++++||+|+.|||+|
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999 999998 5666665554 3588999999999999986
No 128
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=4e-14 Score=102.80 Aligned_cols=109 Identities=26% Similarity=0.270 Sum_probs=75.2
Q ss_pred EeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-cccCcceeeEEEEecc---
Q 022835 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD--- 232 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~f~v~d--- 232 (291)
+.|.|.|++++++||+++||+++.... ..+..+... + +..+.+........ .....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 578999999999999999999976532 123222221 1 23344433222111 1123467899999987
Q ss_pred hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
++++++++ .++|+++..+|...++ ++.++|+|||||+||++.
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCC--ccEEEEECCCCCEEEeeC
Confidence 55666666 9999999988877766 367899999999999973
No 129
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=5.9e-14 Score=103.39 Aligned_cols=114 Identities=24% Similarity=0.232 Sum_probs=75.3
Q ss_pred ceeEeeeeCCchhcHHHHHHh---hCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe
Q 022835 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v 230 (291)
+.|+.|.|+|++++.+||+++ ||+++..+. .+ . . +.+...+ ....+.+.......+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~-~-~~~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-G-A-VGYGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-c-e-eEeccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 689876442 11 1 2 2233221 1233444332211111 122457999999
Q ss_pred cc---hHHHHHHHHHHHHHhCCeeccCCccCCC--CCceEEEEECCCCceEEEe
Q 022835 231 DD---VYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~ie~~ 279 (291)
+| ++++.+++ .++|+.+..+|...++ .+.+.+||+|||||+|||+
T Consensus 73 ~~~~~v~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAA----LAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHH----HHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 98 44444555 9999998888776553 2345789999999999996
No 130
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=4.8e-14 Score=103.60 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=76.6
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCcc------ccccCcceeeEE
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~h~~ 227 (291)
+.++.|.|.|++++.+||+++|||++..+ .++.+ .++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998764 12222 23332221 223332211110 111234778999
Q ss_pred EEec--chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 228 ISTD--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 228 f~v~--d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
|.|+ |++++++++ .++|+++...+. .. .+++.+||+||||++||++++
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~~-~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-WP-RGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-CC-CCeeEEEEECCCCCEEEEecC
Confidence 9995 677777777 999998876554 22 246889999999999999864
No 131
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=5.8e-14 Score=103.18 Aligned_cols=110 Identities=29% Similarity=0.340 Sum_probs=75.9
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEe--
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST-- 230 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v-- 230 (291)
++.|+.|.|+|++++.+||+++||+++..... + . .++..++ ..+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~~----~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAGD----LWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecCC----EEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 47899999999999999999999999765432 1 1 1222211 22222211111 1234678999998
Q ss_pred cchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
+|++++++++ +++|+++..++.. + ++.+||+|||||+|||+...-
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~~ 112 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGSL 112 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCCH
Confidence 4677777777 9999998665433 2 368999999999999987643
No 132
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.57 E-value=1.1e-13 Score=100.20 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=73.5
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEE--EEE
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF--AIA 99 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i--~~~ 99 (291)
++|+||.|.|+|++++.+||+ .|||++..+. +. ..+...+. ....+.+.... ..++.|+ ++.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~~---~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG---DG---LELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec---Cc---eEEEecCC--CceEEEeecCC-------CCceeeEEEEeE
Confidence 479999999999999999998 5999986542 11 22222222 22223332221 1234444 455
Q ss_pred eCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++|+++++++|+++|+++...+ .+++.. .+||.||+||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 6899999999999999987654 333333 389999999999998654
No 133
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.57 E-value=1.4e-13 Score=117.02 Aligned_cols=121 Identities=24% Similarity=0.353 Sum_probs=84.3
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
..+++|+||+|.|+|++++.+||+++|||++......+.+.....|+..+.. . ..+.+... .+.+++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-------~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-V-HDIALTNG-------NGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-c-CceEeecC-------CCCceeeEEE
Confidence 4578999999999999999999999999998765443333333455533221 1 12222211 2357899999
Q ss_pred EeCC---HHHHHHHHHHcCCe--eecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 99 ATED---VYKLVENIRAKGGN--VTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---i~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|++ +...|.....+...++|++||+|++|||....
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9988 55678999999987 44444333333334589999999999998754
No 134
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.57 E-value=7.4e-14 Score=103.03 Aligned_cols=113 Identities=26% Similarity=0.359 Sum_probs=73.1
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCC---ccc--cCCCCceEEE--E
Q 022835 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV---TSY--DIGTGFGHFA--I 98 (291)
Q Consensus 26 hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~---~~~--~~~~~~~~i~--~ 98 (291)
||.|.|+|++++++||+++|||++..... . ...+..+ +..+.+.+...... ... ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999864321 1 1222222 22333333221100 000 1112345665 5
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccCCC---CceEEEEEECCCCCEEEEEE
Q 022835 99 ATEDVYKLVENIRAKGGNVTREPGPLKG---GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~di~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~dp~G~~iel~~ 146 (291)
.++|+++++++|+++|+++..+|..... +....++++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6689999999999999998876654321 22234899999999999974
No 135
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.56 E-value=1.6e-13 Score=98.45 Aligned_cols=112 Identities=31% Similarity=0.448 Sum_probs=81.1
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHH
Q 022835 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~ 105 (291)
|+.|.|+|++++.+||+++||++....... ......++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998776542 11233444432 233444443322211345578899999999999
Q ss_pred HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 022835 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
++++|.++|+.+..++....++.. .+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGR-VAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcE-EEEEECCCCcEEeC
Confidence 999999999998877653334444 48999999999985
No 136
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=5.6e-14 Score=103.70 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=73.4
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccC-----cccc--ccCcceeeE
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG-----VTEY--TKGNAYAQV 226 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-----~~~~--~~~~~~~h~ 226 (291)
+.+++|.|+|++++++||++ |||++.......+ ...+..+ + ...+.+..... .... ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36899999999999999976 9999764322222 1122121 1 22333322110 0000 123356799
Q ss_pred EEEecc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~f~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
+|.|++ ++++.+++ +++|+++..+|...++ .+.+||+|||||+|||+
T Consensus 73 ~f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 73 SLSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVL 122 (124)
T ss_pred EEeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEE
Confidence 999985 55666666 9999999888776654 46789999999999997
No 137
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.56 E-value=1.4e-13 Score=100.95 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=75.3
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHH
Q 022835 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~ 105 (291)
...|.|+|++++++||++ |||++..+... . ..++..+ + ..+.+...... .+.....+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~--~--~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG--D--LELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC--C--EEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 457899999999999999 99998755331 1 2334333 2 23344332211 112234578999999999
Q ss_pred HHHHHHHcCCeee-------cCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 106 LVENIRAKGGNVT-------REPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++|+++|+++. .++...++|.+. ++|+||+||+|+|++.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~-~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMRE-FALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeE-EEEECCCCCEEEeecC
Confidence 9999999999742 344445566654 8999999999999875
No 138
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=8e-14 Score=102.87 Aligned_cols=113 Identities=21% Similarity=0.224 Sum_probs=76.8
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCC-----Cccc--cCCCCceEE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-----VTSY--DIGTGFGHF 96 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-----~~~~--~~~~~~~~i 96 (291)
+.+|.|.|+|++++++||++ |||+.......+. ..++..++ . ..+.+..... ..+. ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD-N--IFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC-c--eEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 46899999999999999987 9999764322221 12232332 2 2233322110 0000 123356799
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 97 AIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|.|+ ++++++++++++|+++..+|...+++ + .+||+|||||+|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~-~-~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGFM-Y-GRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCce-E-EEEEECCCCCEEEEEE
Confidence 99997 58899999999999998887776653 3 3799999999999974
No 139
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=8.5e-14 Score=102.07 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=76.0
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecc--
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD-- 232 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d-- 232 (291)
.|+.|.|+|++++.+||+++||++...+.. + +..+... . ....+.+...... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---~-~~~~~~~--~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD---D-YAKFLLE--D--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC---C-eeEEEec--C--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 689999999999999999999998765421 1 2222222 1 1222333221111 11478999999998
Q ss_pred -hHHHHHHHHHHHHHhCCeeccCCccCC-CCCceEEEEECCCCceEEEecch
Q 022835 233 -VYKSAEVVNLVTQELGGKITRQPGPIP-GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 -~~~~~~~l~~~~~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+++..+++ .++|+++...|.... +...+++|++||+||+|||+++.
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 45555555 999999887665432 22357899999999999999754
No 140
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=2.1e-13 Score=99.97 Aligned_cols=112 Identities=26% Similarity=0.449 Sum_probs=77.4
Q ss_pred EEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCC--
Q 022835 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 25 ~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d-- 102 (291)
.|+.|.|+|++++.+||+++||++...... . . ..|. .++. .+.+.+...... ...+..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~-~~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D--Y-AKFL-LEDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C--e-eEEE-ecCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998764421 1 1 2222 2222 233333222111 11477899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCC-CceEEEEEECCCCCEEEEEEcC
Q 022835 103 -VYKLVENIRAKGGNVTREPGPLKG-GTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -i~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++++++++.++|+++...+....+ +....++++||+||.|||++..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 788999999999998766543322 2223488999999999999754
No 141
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.54 E-value=2.1e-13 Score=115.39 Aligned_cols=120 Identities=21% Similarity=0.347 Sum_probs=83.4
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCC--C-ceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEE
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE--E-KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 96 (291)
...+|+||.|.|+|++++.+||+++|||++......+. + .+..+|+..++... .+.+... ....+++|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHH--SLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcc--eEEEecC------CCCCceEEE
Confidence 36799999999999999999999999999866532211 1 12345665443222 2222211 123578999
Q ss_pred EEEeCCHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 97 AIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 ~~~v~di~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
||.|+|+++ ++++|+++|+ ....+...+.+...++|++||+|+++|+....
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 999988776 8999999999 44444333333445689999999999998743
No 142
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.54 E-value=1.2e-13 Score=100.08 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=72.4
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceee--EEEEe
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ--VAIST 230 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h--~~f~v 230 (291)
++.|+.|.|+|++++.+||+ +|||++..+. + .. .+...+. ....+.+... ...+..| +.|.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~~-~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--GL-ELRTAGN--DHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--ce-EEEecCC--CceEEEeecC-------CCCceeeEEEEeEh
Confidence 68999999999999999997 6999986542 1 11 1222111 2233333221 1123344 55566
Q ss_pred cchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+|++++++++ +++|+++..++.. + +.+.+||+||+||+|||....
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~~--~-~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPPG--A-DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCCc--C-CCCEEEEECCCCCEEEEecCC
Confidence 8899999999 9999998776522 2 246799999999999998643
No 143
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=2.4e-13 Score=98.73 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=77.4
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccc-cCCCCceEEEEEeCC---
Q 022835 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY-DIGTGFGHFAIATED--- 102 (291)
Q Consensus 27 v~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~i~~~v~d--- 102 (291)
+.|.|+|++++.+||+++||+++.... ..+ ..+..++ + ..+.+......... ....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~--~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTF--ALFVLGS-G--VKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----Cce--EEEEeCC-C--cEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 678999999999999999999976431 122 2233222 2 23334433222111 234467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
++++++++.++|+++..++...++|+ .++|+||+||+|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88999999999999998888877774 378999999999986
No 144
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.54 E-value=1.1e-13 Score=99.26 Aligned_cols=112 Identities=29% Similarity=0.371 Sum_probs=81.5
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHH
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~ 235 (291)
|+.+.|+|++++.+||+++||+++........ .....+..+ +..+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78999999999999999999999877653211 233444422 355656543322111234578999999999999
Q ss_pred HHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEE
Q 022835 236 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~ 278 (291)
+.+++ .++|+.+..++... ..+.+.+|+.||+|+.|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~~-~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPREE-PWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcCC-CCCcEEEEEECCCCcEEeC
Confidence 99999 99999988876522 2246899999999999986
No 145
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.54 E-value=1.1e-13 Score=101.75 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=73.8
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeecccc-----CccccccCcceeeEEE
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-----GVTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~~~~~~h~~f 228 (291)
++|++|.|.|++++++||+. |||++...... ..+ ..+..++ +..+.+.... .......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPH--VEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCc--EEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99987543211 111 1122111 1222221110 0000012234578888
Q ss_pred Eec---chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 229 STD---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
.+. |++++.+++ +++|+++..+|...++ +.+.++|+|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 875 688888888 9999999888877665 458899999999999996
No 146
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.53 E-value=1.6e-13 Score=100.58 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=74.7
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHH
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~ 235 (291)
...|.|.|++++++||++ |||++..+... . ++.+..+ +..+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 467899999999999999 99998754321 2 2333322 234444332111 111234689999999999
Q ss_pred HHHHHHHHHHHhCCeec-------cCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 236 SAEVVNLVTQELGGKIT-------RQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~-------~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
+++++ +++|+++. .+|...++ +.+.++|+|||||+|||.+.
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 99999 99999753 23333334 46889999999999999874
No 147
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.53 E-value=1.1e-13 Score=102.20 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=72.5
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCcc---c--cccCcceeeEE--
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT---E--YTKGNAYAQVA-- 227 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~--~~~~~~~~h~~-- 227 (291)
.|+.|.|+|++++++||+++||+++..... .+ ..+...+ ....+.+....... . .....+..|++
T Consensus 1 ~Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 72 (125)
T cd08357 1 FHLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLI 72 (125)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--ccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEE
Confidence 389999999999999999999999754321 11 1121111 11122221111000 0 01112445654
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCC---CCCceEEEEECCCCceEEEec
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIP---GLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~---~~~~~~~~~~DPdG~~ie~~~ 280 (291)
|.++|++++.++| +++|+++..+|.... .++.+.+||+|||||+|||..
T Consensus 73 ~~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 73 LSEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred EeHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 5668898888888 999999987776421 123588999999999999975
No 148
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.52 E-value=1.7e-13 Score=98.65 Aligned_cols=95 Identities=25% Similarity=0.304 Sum_probs=75.9
Q ss_pred EEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccc--cCCCCceEEEEEeCC
Q 022835 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHFAIATED 102 (291)
Q Consensus 25 ~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~i~~~v~d 102 (291)
+||+|.|+|++++.+||+++||++.......+..+.+..++..+++. ..+++..+.....+ ..+.|++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999987776666777777887766432 55676665443322 277899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 022835 103 VYKLVENIRAKGGNVTREP 121 (291)
Q Consensus 103 i~~~~~~l~~~G~~~~~~~ 121 (291)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999977653
No 149
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.51 E-value=1.5e-12 Score=93.72 Aligned_cols=122 Identities=25% Similarity=0.281 Sum_probs=86.8
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
.+...+.|..|.|+|++++.+||+++|||+........+ .....+..+.....=.+.. .....++.....+.|
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~-----~~~~~p~~~~~~iy~ 77 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMA-----RPGSPPGGGGWVIYF 77 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceecc-----CCcCCCCCCCEEEEE
Confidence 456778999999999999999999999999976543322 2233332222111101110 111122234557788
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+|++++.+|++++|.+++.++.+.+++.+. +.+.||+||+|.|++..
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~-a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPGGGRI-AHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCCceEE-EEEECCCCCEEEEeecC
Confidence 89999999999999999999999999965554 88999999999999764
No 150
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=8.3e-13 Score=96.77 Aligned_cols=110 Identities=25% Similarity=0.350 Sum_probs=75.7
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCC------CccccCCCCceEEEEEe
Q 022835 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG------VTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 27 v~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~i~~~v 100 (291)
|.|.|+|++++.+||+++|||++..+. .. ...++..+ . ..+.+..... ......+.+..++++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLG--G--LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcC--C--eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986541 11 12444432 2 2333332111 11111223444566654
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 101 ---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ---~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|++++++++++.|+++..++...++|... ++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGYS-GYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCceE-EEEECCCCCEEEEee
Confidence 689999999999999998877777776554 899999999999975
No 151
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.46 E-value=1e-12 Score=96.26 Aligned_cols=110 Identities=25% Similarity=0.247 Sum_probs=73.5
Q ss_pred EeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccC------ccccccCcceeeEEEEe
Q 022835 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG------VTEYTKGNAYAQVAIST 230 (291)
Q Consensus 157 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~------~~~~~~~~~~~h~~f~v 230 (291)
|.|.|.|++++.+||+++|||++..+. ...+ .++..+ +..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999986551 1112 223321 23344432111 00011222345566665
Q ss_pred ---cchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 231 ---DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ---~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+|++++++++ +++|+++..+|...++ +++.+|++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 5677777777 9999999887776654 4688999999999999974
No 152
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.46 E-value=1.2e-12 Score=94.81 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=71.9
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHHHH
Q 022835 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (291)
Q Consensus 27 v~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~~~ 106 (291)
..|.|+|++++.+||++ |||++..... . ..++..+ +..+.+ ...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~--~~~l~~~--~~~l~l--~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----N--LAYFRLG--NCAFYL--QDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----C--EEEEEcC--CEEEEe--ecCCCc----ccccCCEEEEEECCHHHH
Confidence 46789999999999998 9999976531 1 3555543 223322 221111 112235789999999999
Q ss_pred HHHHHHcCCeee-----cCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 107 VENIRAKGGNVT-----REPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 107 ~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++|+++|+++. .++...++|.+. ++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~-f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGRE-FFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEE-EEEECCCccEEEeeC
Confidence 999999998742 234455666655 899999999999864
No 153
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=1.4e-12 Score=94.59 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=71.7
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHH
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~ 235 (291)
...|.|.|++++.+||++ |||++.... + . ..++..+ +..+.+...... ...+..+++|.|+|+++
T Consensus 4 ~~~l~v~Dl~~s~~FY~~-LGf~~~~~~---~-~--~~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~ 68 (113)
T cd08356 4 RPFIPAKDFAESKQFYQA-LGFELEWEN---D-N--LAYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEA 68 (113)
T ss_pred eeccccccHHHHHHHHHH-hCCeeEecC---C-C--EEEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHH
Confidence 356889999999999987 999987653 1 1 2334432 223333221111 11234689999999999
Q ss_pred HHHHHHHHHHHhCCeecc-----CCccCCCCCceEEEEECCCCceEEEec
Q 022835 236 SAEVVNLVTQELGGKITR-----QPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~-----~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+.+++ +++|+++.. +|...++ +.+.++|+|||||+|+|.+
T Consensus 69 ~~~~l----~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 69 YYEHI----KALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHH----HHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 99999 999987542 3333333 4699999999999999864
No 154
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.44 E-value=5.8e-13 Score=95.90 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=74.5
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc--cccCcceeeEEEEecc
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~f~v~d 232 (291)
+|+++.|+|++++.+||+++||+++.........+....++..++. ...++|..+.+..+ ...+.|++|++|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999999999999999999999998776555555556666654331 26788877654432 2367799999999999
Q ss_pred hHHHHHHHHHHHHHhCCeeccCCc
Q 022835 233 VYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
++++.+++ +++|++++..+.
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~~ 98 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEGP 98 (109)
T ss_dssp HHHHHHHH----HHTTECEEECEE
T ss_pred HHHHHHHH----HHCCCEEcccCc
Confidence 99999999 999999887643
No 155
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=6.2e-13 Score=103.43 Aligned_cols=120 Identities=41% Similarity=0.719 Sum_probs=101.6
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCC-----------cceeEEEecccccccceeEeeccccCcccccc
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK 219 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 219 (291)
..+.-|+.+.|.|.+++++||+++||+++.+.....+ ++++-.+++.++++++..++|++++....|..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 4678999999999999999999999999988755443 67777888988999999999999999988999
Q ss_pred CcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 220 ~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
|+++-|+++.++|+-..++.+ +..|.+ +.+.-.+++.||||+.|++.+..+
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p 145 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGP 145 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccCC
Confidence 999999999999988888888 655541 123567889999999999997544
No 156
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.9e-12 Score=94.53 Aligned_cols=142 Identities=32% Similarity=0.469 Sum_probs=83.1
Q ss_pred CCCCcccccccccCCCCCCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCC-----------
Q 022835 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE----------- 70 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~----------- 70 (291)
+.++.+.........+ +....+.|..+.|.|+.++..||++++|+.+......++..+..++++....
T Consensus 2 ~s~~~~~~l~~~~~~~-~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~ 80 (170)
T KOG2944|consen 2 ASDANALGLFSRADSS-TPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS 80 (170)
T ss_pred CccccchhhhcccCCC-CchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc
Confidence 3333444333333333 2345556777777777777777777777766554443332222222221000
Q ss_pred ----CcceEEEeeecCCC-----cccc----CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCce-EEEEEEC
Q 022835 71 ----QSHFVVELTYNYGV-----TSYD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTT-HIAFVKD 136 (291)
Q Consensus 71 ----~~~~~l~~~~~~~~-----~~~~----~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~~d 136 (291)
...-.+++..+.+. ..+. .+.|.+||||.|+|+.+++.+|++.|+++...+. +|.. ..+++.|
T Consensus 81 v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~---dGk~K~iaF~~d 157 (170)
T KOG2944|consen 81 VFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK---DGKMKPIAFLHD 157 (170)
T ss_pred eEEecccCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC---CccccceeEEEC
Confidence 00112445544322 1121 1248999999999999999999999999654332 3332 4588999
Q ss_pred CCCCEEEEEEc
Q 022835 137 PDGYIFELIQR 147 (291)
Q Consensus 137 p~G~~iel~~~ 147 (291)
|||+.|||...
T Consensus 158 pDgywiei~~~ 168 (170)
T KOG2944|consen 158 PDGYWIEIELE 168 (170)
T ss_pred CCCCeEEEeec
Confidence 99999999764
No 157
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.35 E-value=1.1e-11 Score=99.28 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=86.0
Q ss_pred CCCCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-cccCcceeeEEE
Q 022835 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAI 228 (291)
Q Consensus 150 ~~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~f 228 (291)
.+..+..+.|.|+|++++..||++++|+++..+.. ....++.++ ...+.|....+... .+...|..|++|
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeee
Confidence 35578889999999999999999999999887643 223344333 24555554333222 345679999999
Q ss_pred EecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
.+++-.+..+.+ ..+.+.|+.+. +...+.. .-.+||.||+||-||++.+++
T Consensus 78 LlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 78 LLPTREDLARVL-NHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred ecCCHHHHHHHH-HHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 999744444444 33388888875 4555544 477999999999999999864
No 158
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.1e-11 Score=90.49 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=78.3
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-----cc----cCcce
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-----YT----KGNAY 223 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-----~~----~~~~~ 223 (291)
++.+..+.+++.-+...||...||++..+..+.+......+.+. ....++|+.+....+ +. .+.|.
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~-----~~~~~ELthn~Gtes~~~~~~~ngN~~prGf 116 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFS-----RNAKLELTHNWGTESPPDQAYLNGNKEPRGF 116 (170)
T ss_pred hhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEec-----ccCceeeecCCCCCCCcchhhcCCCCCCCcc
Confidence 45666666666666667776667766555544332222222222 134567765543222 22 22389
Q ss_pred eeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 224 ~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+||+|.|+|+.++.+++ +++|+++...|..-. ...++++.||||++|||..+.
T Consensus 117 gHIci~V~di~sac~~l----kekGV~f~Kk~~dGk--~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 117 GHICIEVDDINSACERL----KEKGVRFKKKLKDGK--MKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred ceEEEEeCCHHHHHHHH----HHhCceeeecCCCcc--ccceeEEECCCCCeEEEeecC
Confidence 99999999999999999 999999766555422 247899999999999997653
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.32 E-value=2.2e-11 Score=96.46 Aligned_cols=100 Identities=24% Similarity=0.388 Sum_probs=73.4
Q ss_pred cceeEEEEEEeC--CHHHHHHHHHhccCCEEEEEeccCC--CceEEEEEecCCCCcceEEEeeecCC--C-c---c---c
Q 022835 21 KRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYG--V-T---S---Y 87 (291)
Q Consensus 21 ~~~i~hv~i~v~--d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~~~--~-~---~---~ 87 (291)
+.+|+||++.|+ |++++.+||+++|||+.......++ .+.....+..++ ..+.+++..+.. . . . .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHH
Confidence 368999999999 9999999999999999887655433 334444554332 334455544322 1 1 1 1
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCc
Q 022835 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.|+||.|+|+++++++|+++|+++..+|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24789999999999999999999999999887654
No 160
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.25 E-value=1.3e-10 Score=80.04 Aligned_cols=119 Identities=28% Similarity=0.324 Sum_probs=78.2
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCcc-c-c--CCCCceEE-
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-Y-D--IGTGFGHF- 96 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~-~--~~~~~~~i- 96 (291)
+.+-|++|.|+|++++++||.++||++.-...+ .|+.+.=.+..++..+........ . . ++--.-|+
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccce
Confidence 456799999999999999999999998743322 222221123344444443332211 1 1 12123344
Q ss_pred -EEEeCCHHHHHHHHHHcCCeeecCCccCCCC---ceEEEEEECCCCCEEEEEEcC
Q 022835 97 -AIATEDVYKLVENIRAKGGNVTREPGPLKGG---TTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 -~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g---~~~~~~~~dp~G~~iel~~~~ 148 (291)
.+.++|.-++.+||+++|+....+|..+..| ....+++.||.||.+|+-.-.
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 4667899999999999999988887655432 223478999999999986543
No 161
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.21 E-value=8.4e-11 Score=93.12 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=73.7
Q ss_pred CCceeEeeeeC--CchhcHHHHHHhhCCeeeeeecCCC--cceeEEEecccccccceeEeeccccCc--cc-------cc
Q 022835 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV--TE-------YT 218 (291)
Q Consensus 152 ~~~~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~-------~~ 218 (291)
.+++|+++.|+ |++++.+||+++|||++.......+ .+.....+..+ .....++|..+.+. .+ ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 36899999999 9999999999999999887654332 22333344422 23566777654331 11 22
Q ss_pred cCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCc
Q 022835 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 219 ~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.|+|++|++|.|+|++++++++ +++|++++..|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4679999999999999999999 999999998875
No 162
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.14 E-value=8.2e-10 Score=76.13 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=76.4
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc--cc----cCcceeeE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YT----KGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~----~~~~~~h~ 226 (291)
.+.|..+.|+|++++++||.++||++..+..+. ++-+.. ..+...+-+....+... .. ......-+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~------wvdfDf--yGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDT------WVDFDF--YGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccce------EEEeee--cccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 467999999999999999999999997765331 111110 00111111111110000 00 11233457
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccCCccC---CCCCceEEEEECCCCceEEEecchh
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPI---PGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~---~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
.|.++|.-+..+++ +++|+.+..+|.-+ .-+.++.+++.||+||.+|+-...+
T Consensus 76 Vl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 76 VLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred EEEHHHHHHHHHHH----HHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccc
Confidence 78888888888888 99999988887742 1124788999999999999965544
No 163
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.13 E-value=5.2e-10 Score=97.32 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCCCcceeEEEEEEeC--CHHHHHHHHHhccCCEEEEEeccCC--CceEEEEEecCCCCcceEEEeeecC---CCc----
Q 022835 17 PKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNY---GVT---- 85 (291)
Q Consensus 17 ~~~~~~~i~hv~i~v~--d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~~---~~~---- 85 (291)
+.+.+.+|+||++.|+ |+++++.||+++|||+.......+. .......+...+ ....+++..+. ...
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~--g~~~i~L~ep~~~~~~s~i~~ 229 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPD--GKVKIPLNEPASGKDKSQIEE 229 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCC--CcEEEEEeccCCCCCCCHHHH
Confidence 3456899999999999 9999999999999999887654322 222222333222 23445555431 111
Q ss_pred --cccCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCc
Q 022835 86 --SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 86 --~~~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~ 122 (291)
....|.|+.||||.|+|+++++++|+++|+++..+|.
T Consensus 230 fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 230 FLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 1224789999999999999999999999999887653
No 164
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.12 E-value=7.1e-09 Score=76.12 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=85.9
Q ss_pred EEEeC-CHHHHHHHHHhccCCEEEEEeccCC----------CceEEEEEecCCCCcceEEEeeecCCCccccC-CCCceE
Q 022835 28 VYRVG-DLDRTIKFYTECFGMKLLRKRDVPE----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI-GTGFGH 95 (291)
Q Consensus 28 ~i~v~-d~~~~~~FY~~~lG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 95 (291)
.|..+ |.++|++||+++||.+...+...++ +....+-+.+++ . .+.+........... +.....
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g--~--~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGG--S--TIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECC--E--EEEEecCCCccCcccCCCeeEE
Confidence 46778 9999999999999999998877666 455556666652 1 222222211111112 223456
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 022835 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 96 i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+.+.++|++++++++.+.|+++..+++..+||.+. ..++||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~-G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRY-GQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcccce-EEEECCCCCEEEEecCcc
Confidence 67778889999999999999999999999998875 789999999999877653
No 165
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.11 E-value=5.4e-09 Score=77.41 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=73.7
Q ss_pred EEEe-CCHHHHHHHHHhccCCEEEEEecc----------CCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEE
Q 022835 28 VYRV-GDLDRTIKFYTECFGMKLLRKRDV----------PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 28 ~i~v-~d~~~~~~FY~~~lG~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 96 (291)
.|.+ .|.++|++||+++||+++...... ..+......+.+++ .. +.+......... .+.+..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g--~~--l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG--QR--LMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC--EE--EEEEcCCCCCCC-CCCCCEEE
Confidence 4666 899999999999999999876532 11233344455443 22 222222111111 12234578
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 022835 97 AIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 97 ~~~v~d---i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
++.|+| +++++++|.+.| ++..++...++|.+. ..++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 888876 778889987666 888888888888765 8899999999987
No 166
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.07 E-value=3.7e-09 Score=82.75 Aligned_cols=147 Identities=24% Similarity=0.322 Sum_probs=83.1
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecC---CC----ccc-----cCCC
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY---GV----TSY-----DIGT 91 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---~~----~~~-----~~~~ 91 (291)
|+||.+.|+|++++.++|++.|||++......+..+..-..+.++++ .||+.... .. ..+ ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~----YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG----YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS----EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc----eEEEEEeCCcccccccccceechhhcCCC
Confidence 68999999999999999977899999988887775666666666553 23333211 11 101 1467
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCc--eEEEEEECC----CCCEEEEEEcCC-C---------CCCce
Q 022835 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGT--THIAFVKDP----DGYIFELIQRGP-T---------PEPLC 155 (291)
Q Consensus 92 ~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~--~~~~~~~dp----~G~~iel~~~~~-~---------~~~~~ 155 (291)
|+..+|+.++|+++..++|++.|+.... +....++. ...+++.++ .+..-.+++-.+ . ..++.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~~-r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAGS-RVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEEE-EEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCCC-cCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 8999999999999999999999986211 11111121 223445553 245555663322 1 23589
Q ss_pred eEeeeeCCchhcHHHHHHhh
Q 022835 156 QVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~l 175 (291)
++.+.++|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999998865
No 167
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.03 E-value=3.7e-09 Score=74.32 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=73.5
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccc------cCccccccCcceeeE
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYN------YGVTEYTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~------~~~~~~~~~~~~~h~ 226 (291)
+..+|+|.|.|++++.+||.. |||+..+...+.. ....... + +-..+-|... ...........-..+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~--a~~mi~~--~--ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED--AACMIIS--D--NIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc--ceeEEEe--c--cEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 467899999999999999977 9999876543222 1222222 1 1122222110 011112233466789
Q ss_pred EEEecc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 227 ~f~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
+|.+.+ +++.+++. .++|+....+|...... +-.-|.|||||.||++=
T Consensus 76 ~ls~~s~eevd~~v~ka----~eaGGk~~~~~~d~gfM--Yg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 76 SLSAGSREEVDELVDKA----LEAGGKPANEPQDEGFM--YGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EeccCcHHHHHHHHHHH----HHcCCCCCCCccccccc--cceeeeCCCCCeEEEEE
Confidence 999986 55555555 99999998777765542 33568999999999964
No 168
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.03 E-value=7.7e-09 Score=76.60 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=69.9
Q ss_pred eeee-CCchhcHHHHHHhhCCeeeeeecCC----------CcceeEEEecccccccceeEeeccccCccccccCcceeeE
Q 022835 158 MLRV-GDLGRSIKFYEKALGMKLLRTVDKP----------EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 158 ~l~v-~d~~~~~~fy~~~lG~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (291)
-|.+ .|.+++.+||+++||+++....... ++...-..+..+ +..+-+......... .+....++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 3556 8999999999999999988765321 111122222221 222322221111111 12345689
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
++.|+|.++ ++++++++.+.| +++.+|...++ +.+.++++||+|+.|+|.
T Consensus 79 ~i~~~~~e~-v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEE-ADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHH-HHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 999998333 344444446554 88888887776 468899999999999984
No 169
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.96 E-value=3.9e-09 Score=78.01 Aligned_cols=122 Identities=23% Similarity=0.386 Sum_probs=73.9
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCce---EEEEEecCCCCcceEEEe--------eecCCCc-cccC
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY---SNAFLGFGPEQSHFVVEL--------TYNYGVT-SYDI 89 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~l~~--------~~~~~~~-~~~~ 89 (291)
+++.||.|.|+|++++.+||+++||++............ ...+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 478999999999999999999999999987655333211 111111110000110000 0000000 0011
Q ss_pred C-CCceEEEEEeCC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 022835 90 G-TGFGHFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 90 ~-~~~~~i~~~v~d---i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+ .+..|+++.+.+ .......+...|..+..... ..++. .+|++||||+++|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 346789999988 66777777788888655433 33333 4899999999999864
No 170
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.95 E-value=9.2e-09 Score=72.35 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=74.3
Q ss_pred ceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccc-------cCCCCce
Q 022835 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY-------DIGTGFG 94 (291)
Q Consensus 22 ~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~ 94 (291)
.+...|.|.|.|++++.+||+. |||+.-.....+. ...++ +++ . +.+.|.....-+.+ .....-.
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi-~~~-n--i~vMLL~~~~fq~F~~~~i~dt~~s~ev 73 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMI-ISD-N--IFVMLLEEARFQTFTKRQIADTTKSREV 73 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEE-Eec-c--EEEEEeccHHhhhhcccccccccCCceE
Confidence 4567899999999999999999 9999854422211 12222 221 1 22222221111111 1223445
Q ss_pred EEEEEeC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 95 HFAIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 95 ~i~~~v~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
-+|+.+. +++++.+++.++|.+...++..... .+ ...|.|||||.||+..-.
T Consensus 74 li~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf-MY-g~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 74 LISLSAGSREEVDELVDKALEAGGKPANEPQDEGF-MY-GRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred EEEeccCcHHHHHHHHHHHHHcCCCCCCCcccccc-cc-ceeeeCCCCCeEEEEEeC
Confidence 6778774 5889999999999998766554432 22 367899999999998654
No 171
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.95 E-value=6.2e-09 Score=76.84 Aligned_cols=123 Identities=15% Similarity=0.227 Sum_probs=83.2
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccc--cCCCCceEE
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHF 96 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~i 96 (291)
+.+.++.||++.|++.+++..+++. |||+.+.+.... .+..++ ++...+++...+......+ .+|++++.+
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~~-lGF~~~a~hrsk----~v~l~r--QG~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFTA-LGFQPVARHRSK----DVTLYR--QGDINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHCC-CCEEEECCECCC----SEEEEE--ETTEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCCeEEEEEecCCHHHHHHHHHH-hCcceEEecCCc----ceEEEE--eCCEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 6799999999999998888888865 999998764321 123333 4567777765443333333 378999999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC
Q 022835 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 97 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
+|+|+|.+++++++.+.|++....+.. + +.....-++.++|.++.|++....
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~-~-~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTG-P-GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEE-T-T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCC-C-CcEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999999999997765422 2 233346789999999999988643
No 172
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.91 E-value=6.3e-09 Score=76.87 Aligned_cols=121 Identities=24% Similarity=0.287 Sum_probs=72.2
Q ss_pred CceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcc---eeEEEecccccccc--eeE------eeccccCcc-ccccC
Q 022835 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK---YTLAMLGYAEEDQT--TVL------ELTYNYGVT-EYTKG 220 (291)
Q Consensus 153 ~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~l------~l~~~~~~~-~~~~~ 220 (291)
++.|+.+.|+|++++.+||+++||+++..+....... .............. ... ......... ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5789999999999999999999999998765432221 11122221100000 000 000000000 01111
Q ss_pred -cceeeEEEEecc---hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEec
Q 022835 221 -NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 221 -~~~~h~~f~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~ 280 (291)
.+..|++|.+.+ ........ ...|..+...+. ..+ +..+|++||||++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 246899999998 45555555 777887665444 222 238999999999999974
No 173
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.91 E-value=5.2e-09 Score=90.74 Aligned_cols=101 Identities=21% Similarity=0.335 Sum_probs=73.5
Q ss_pred CCcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCC-----CceEEEEEecCCCCcceEEEeeecCC----C---cc
Q 022835 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----EKYSNAFLGFGPEQSHFVVELTYNYG----V---TS 86 (291)
Q Consensus 19 ~~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~l~~~~~~~----~---~~ 86 (291)
..+.+|+||++.|++++++..||+++|||+.......+. .+.....+..+++ ...+++..+.. . ..
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g--~v~ipLnEP~~~~~~~SqI~e 253 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNE--MVLLPLNEPTFGTKRKSQIQT 253 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCC--cEEEEeccCCCCCCCcChHHH
Confidence 347899999999999999999999999998876544322 1234555543332 34455544321 1 12
Q ss_pred c---cCCCCceEEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 022835 87 Y---DIGTGFGHFAIATEDVYKLVENIRAK----GGNVTREP 121 (291)
Q Consensus 87 ~---~~~~~~~~i~~~v~di~~~~~~l~~~----G~~~~~~~ 121 (291)
+ ..|.|++||||.|+||.++.++|+++ |++++..|
T Consensus 254 FL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 254 YLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 2 35789999999999999999999999 99987644
No 174
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.90 E-value=5.7e-08 Score=71.38 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=76.7
Q ss_pred eeeC-CchhcHHHHHHhhCCeeeeeecCCC----------cceeEEEecccccccceeEeeccccCccccccCc-ceeeE
Q 022835 159 LRVG-DLGRSIKFYEKALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN-AYAQV 226 (291)
Q Consensus 159 l~v~-d~~~~~~fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~h~ 226 (291)
|... |.+++.+||+++||.+...+...++ +...=+.+..+ +..|-+....+......++ .-.-+
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEEE
Confidence 5566 9999999999999999888766554 22111122211 1222222221111112222 33467
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
.+.++|++...+++ .+.|+++..++....+ +.++..++||.|+.|-|....
T Consensus 82 ~~~~~d~da~f~~a----~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERA----AAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHH----HhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCc
Confidence 77777877777777 9999999999888877 578999999999999997764
No 175
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.76 E-value=6.7e-07 Score=62.79 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=65.3
Q ss_pred EEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCCHH
Q 022835 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 25 ~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~di~ 104 (291)
.+-.|.|+|-+...+||+++|||++..+.. .+++++..+....++|+-++............+..+.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 466899999999999999999999988755 35677654444456666555544444445567899999999987
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+. +.|.++|.++... .....| +. +-..+|+|.++.+....
T Consensus 76 EI-e~LLar~~~~~~l-~kg~~g-yA-fe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 EI-EALLARGAQYDRL-YKGKNG-YA-FEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HH-HHHHHC-S--SEE-EE-SSS-EE-EEEE-TT--EEEEE--S
T ss_pred HH-HHHHhccccccee-EEcCCc-eE-EEEECCCCCEEEEEEcC
Confidence 74 4555666553221 122222 22 45679999999877554
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.66 E-value=2.2e-07 Score=78.02 Aligned_cols=107 Identities=23% Similarity=0.240 Sum_probs=69.4
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~ 231 (291)
.+..||+|.|.|++++++||+++|++.. . .++. ... ++ + ....+-+... + ........+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~--F---sde~-a~c-m~--d--tI~vMllt~~-D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC--W---DGDK-LFL-LG--K--TSLYLQQTKA-E----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC--C---CCCc-ccc-cc--C--cEEEEEecCC-C----CCCcceEEEEeccC
Confidence 5688999999999999999999988874 1 1111 111 11 1 1222222221 1 11235578999999
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
+ .+.+.++-.+..++|+....+|..+.. .--|.|||||.||++
T Consensus 310 S-re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~ 352 (357)
T PRK01037 310 C-EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVS 352 (357)
T ss_pred C-HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEE
Confidence 7 444444444449999977666666544 346899999999997
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.61 E-value=4.4e-07 Score=76.26 Aligned_cols=107 Identities=22% Similarity=0.337 Sum_probs=71.4
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEe
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v 100 (291)
-.+.-||+|.|.|++++.+||+.+|++.. .. ++.. +.+ + ...+.+-+.+. .. ....-.-+|+.+
T Consensus 245 ~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~a--~cm--~--dtI~vMllt~~-D~----~~~~evLl~Ls~ 308 (357)
T PRK01037 245 SPKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDKL--FLL--G--KTSLYLQQTKA-EK----KNRGTTTLSLEL 308 (357)
T ss_pred CCceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCcc--ccc--c--CcEEEEEecCC-CC----CCcceEEEEecc
Confidence 35677999999999999999999877763 22 2211 222 2 22222222222 11 122345678888
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 022835 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 101 ~---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+ +++++.+++.++|.+...+++....+ .-|.|||||.||++..
T Consensus 309 ~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~----rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 309 ECEHDFVRFLRRWEMLGGELGEQADGHFPL----RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCcccccCc----ceeECCCCCEEEEEEE
Confidence 5 58899999999999766666655552 4589999999999864
No 178
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.52 E-value=3e-06 Score=59.58 Aligned_cols=115 Identities=27% Similarity=0.381 Sum_probs=65.2
Q ss_pred eeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-cccC-cceeeEEEEecc
Q 022835 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKG-NAYAQVAISTDD 232 (291)
Q Consensus 155 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~-~~~~h~~f~v~d 232 (291)
.+..+.|.|-+...+||+++|||++..... .+++++... ....+.+-..+.... ...| --+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~--~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQ--KEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT----EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCC--CceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 456799999999999999999999876532 344455222 234444443332221 1223 368899999999
Q ss_pred hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhH
Q 022835 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~ 285 (291)
.+.++.| .++|.++..- ..+..++.+-..+|+|.+|.|....+..
T Consensus 74 -~~EIe~L----Lar~~~~~~l---~kg~~gyAfe~vSPEgd~~llhaEdd~~ 118 (125)
T PF14506_consen 74 -PKEIEAL----LARGAQYDRL---YKGKNGYAFEAVSPEGDRFLLHAEDDIS 118 (125)
T ss_dssp -HHHHHHH----HHC-S--SEE---EE-SSSEEEEEE-TT--EEEEE--S-GG
T ss_pred -HHHHHHH----Hhccccccee---EEcCCceEEEEECCCCCEEEEEEcCCHh
Confidence 7777777 7777663321 1122356666789999999999887764
No 179
>PRK10148 hypothetical protein; Provisional
Probab=98.51 E-value=1.9e-05 Score=59.71 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred EEEEeC-CHHHHHHHHHhccCCEEEEEec---c-----------------CCCceEEEEEecCCCCcceEEEeeecCCCc
Q 022835 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRD---V-----------------PEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85 (291)
Q Consensus 27 v~i~v~-d~~~~~~FY~~~lG~~~~~~~~---~-----------------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 85 (291)
.-|..+ |.++|.+||+++||.++..... . +++....+-+.+++ . .+.+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g--~--~lm~sD~~~~~ 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG--S--DIMMSDAIPSG 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC--E--EEEEECCCCCc
Confidence 345554 8999999999999998865431 1 12344455566643 1 22222211001
Q ss_pred cccCCCCceEEEEEeCCHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCC
Q 022835 86 SYDIGTGFGHFAIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 86 ~~~~~~~~~~i~~~v~di~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~ 151 (291)
...+ ...++++.++|.++ ++++| +.|.++..++...+||.+. ..++||.|+.|.|...+..|
T Consensus 81 -~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~-g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 -KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGF-GKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred -CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhcc-EEEECCCCCEEEEEecCCCC
Confidence 1112 24577888888776 55555 6999999999999998765 78999999999998765433
No 180
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=73.25 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=73.8
Q ss_pred CCcceeEEEEEEeC--CHHHHHHHHHhccCCEEEEEeccCCC--ceEEEEEecCCCCcceEEEeeecC--CC--ccc---
Q 022835 19 KDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNY--GV--TSY--- 87 (291)
Q Consensus 19 ~~~~~i~hv~i~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~--~~--~~~--- 87 (291)
..+..|+|++..|. +++.+..||+++|+|+.....+.++. +.....+....+. +-|.+.... .. ..+
T Consensus 163 ~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~--vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 163 VGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGK--VRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred cCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCc--EEeecccCCCchhHHHHHHHH
Confidence 44689999998876 99999999999999999887666543 3333333322222 444443322 22 112
Q ss_pred cCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCc
Q 022835 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~~~~~~~i~~~v~di~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.||||.++||-++.++|+++|+.+...|.
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 37889999999999999999999999999887654
No 181
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.22 E-value=2.9e-06 Score=69.50 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=77.7
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcc--eeEEEecccccccceeEeeccc--cCccc-----cccCcc
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK--YTLAMLGYAEEDQTTVLELTYN--YGVTE-----YTKGNA 222 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~--~~~~~-----~~~~~~ 222 (291)
.+++||.+.|.|...+.+||+..|||++.......-+. +.-..++.+ ...+.+... .+... ...|.+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g----~~vFv~~s~~~p~~~~~G~~l~~Hgdg 91 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG----KIVFVFNSAYNPDNSEYGDHLVKHGDG 91 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC----CEEEEEecCCCCCchhhhhhhhhcccc
Confidence 46999999999999999999999999987643211110 111111110 111111111 11111 125667
Q ss_pred eeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCC--CCCceEEEEECCCCceEEEecch
Q 022835 223 YAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIP--GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 223 ~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
+--+||.|+|++++.+.+ .++|+.+..+|-... .+..+++.+..+.-.-.-+++++
T Consensus 92 vkdvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~ 149 (381)
T KOG0638|consen 92 VKDVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERK 149 (381)
T ss_pred hhceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhc
Confidence 889999999999999999 999999999887632 22357777776654444444433
No 182
>PRK10148 hypothetical protein; Provisional
Probab=98.21 E-value=4.8e-05 Score=57.48 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=69.4
Q ss_pred eee-CCchhcHHHHHHhhCCeeeeeecCC--------------------CcceeEEEecccccccceeEeeccccCcccc
Q 022835 159 LRV-GDLGRSIKFYEKALGMKLLRTVDKP--------------------EYKYTLAMLGYAEEDQTTVLELTYNYGVTEY 217 (291)
Q Consensus 159 l~v-~d~~~~~~fy~~~lG~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 217 (291)
|.. .|-+++.+||+++||.++....... ++..--+.+..+ +..+-+..... ..
T Consensus 7 L~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~--~~ 80 (147)
T PRK10148 7 LSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIP--SG 80 (147)
T ss_pred EEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCC--Cc
Confidence 444 4899999999999998876543110 111111222221 12222211111 01
Q ss_pred ccCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecc
Q 022835 218 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 218 ~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~ 281 (291)
.......++++.++|.++ ++++...| +.|+++..++....+ +.++..++||.|+.|.|...
T Consensus 81 ~~~~~~~~l~l~~~d~ee-~~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 KAHYSGFTLVLDTQDVEE-GKRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CCCCCeEEEEEECCCHHH-HHHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEec
Confidence 111124678888889554 34554454 689999999888877 46889999999999999765
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.90 E-value=0.00023 Score=52.76 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc----cccCcceeeEE
Q 022835 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~ 227 (291)
..+++|.+.+++.+++..+++ .|||+..-+....+ ..++.-+ ...+.++...+... ...|+++--++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~--v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD--VTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS--EEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc--eEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 357899999999888888885 59999887653322 2333212 34444443222111 23678999999
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
|.|+|..++.++. .++|++.+..|.... ......++-++|.++-|+++.+
T Consensus 79 frV~Da~~A~~rA----~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 79 FRVDDAAAAYERA----VALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EEES-HHHHHHHH----HHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--S
T ss_pred EEeCCHHHHHHHH----HHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCC
Confidence 9999999999999 999999887764322 2567788999999999998754
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.76 E-value=0.00012 Score=57.28 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=50.4
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcc--eeEEEecccccccceeEeeccccCccc------------ccc
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK--YTLAMLGYAEEDQTTVLELTYNYGVTE------------YTK 219 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~~~~~------------~~~ 219 (291)
++|+.+.|+|++++.++|++.|||++.........+ -.++.++ + + .||+....+... ...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~--~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG--D---G-YLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S--S---S-EEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC--C---c-eEEEEEeCCcccccccccceechhhcC
Confidence 689999999999999999888999998776544423 2444444 2 3 777765321111 013
Q ss_pred CcceeeEEEEecchHHHHHHHHHHHHHhCCe
Q 022835 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGK 250 (291)
Q Consensus 220 ~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~ 250 (291)
+.|..+++|.++|+++..+++ ++.|++
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 568899999999999999999 899975
No 185
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.21 E-value=0.013 Score=40.55 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=41.2
Q ss_pred ceeEeeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec--
Q 022835 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD-- 231 (291)
Q Consensus 154 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~-- 231 (291)
+..+.|+|+| +++..||+++||-... ..+.+... .+..+.+.. ..-=++..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea----~G~DL~~~~-------~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEA----QGPDLTIEN-------NETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGSS-T-------TSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeec----cCCccccCC-------CcEEeeEEEEEEecCc
Confidence 4568899999 8899999998873321 12222221 122221110 00116678899998
Q ss_pred -chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEE
Q 022835 232 -DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 232 -d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~ 278 (291)
|+.+..+++ ++ ..+.-++ ..+++.++||+|..|++
T Consensus 65 ~Dl~~L~~~l----e~--~~~fidK------k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHL----EE--QEFFIDK------KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHT----TT--S-EE--T------T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHh----cc--cceEecC------CceEEEEECCcceEEEe
Confidence 455555555 55 3333222 24789999999999886
No 186
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.14 E-value=0.17 Score=36.49 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=54.8
Q ss_pred eEeeeeCCchhcHHHHHHhhCCeeeeee-cCCC------cceeEEEecccccccceeEeeccccCccccccCcceeeEEE
Q 022835 156 QVMLRVGDLGRSIKFYEKALGMKLLRTV-DKPE------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 156 hv~l~v~d~~~~~~fy~~~lG~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f 228 (291)
++.+. .+-++|.+||.++||-...... ..++ +..--+.+... +..+-..... .....+ ....+++
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~-~~~sl~i 77 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFG-NNISLCI 77 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS-----TTEEEEE
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCC-CcEEEEE
Confidence 34444 7899999999999995333221 1111 11111112211 1222111111 112222 3377888
Q ss_pred EecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEe
Q 022835 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~ 279 (291)
.++| .+.++++..+|.+.|- +. ..+..+.|.-|..|.|+
T Consensus 78 ~~~~-~ee~~~~f~~Ls~gG~---------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 78 ECDD-EEEIDRIFDKLSEGGQ---------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EESS-HHHHHHHHHHHHTTTE---------TC--CEEEEEE-TTS-EEEEE
T ss_pred EcCC-HHHHHHHHHHHHcCCC---------cc--ceeEEEEeCCCCEEEeC
Confidence 8898 6677777777665553 22 37889999999999985
No 187
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.08 E-value=0.33 Score=34.94 Aligned_cols=96 Identities=20% Similarity=0.386 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHhccCCEEEE-EeccCC------CceEEEEEecCCCCcceEEEeeecCCCccccCCCCceEEEEEeCC--
Q 022835 32 GDLDRTIKFYTECFGMKLLR-KRDVPE------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 32 ~d~~~~~~FY~~~lG~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~v~d-- 102 (291)
.+.++|.+||+++||-..+. ....++ +....+.+.+++ .. +...... ..+..+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g--~~--lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG--QK--LMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT--EE--EEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC--eE--EEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 68999999999999953332 222222 233344454432 11 2222222 22223333 577888877
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 022835 103 -VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 -i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
++.++++|.+.|- +++ .+..+.|.-|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~~~--~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------WFS--RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------TCC--EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------ccc--eeEEEEeCCCCEEEeC
Confidence 4566777777663 333 3477999999999875
No 188
>PF15067 FAM124: FAM124 family
Probab=95.69 E-value=0.14 Score=40.98 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred eeEEEEEEeC--CHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeec-CCCccccCCCCceEEEEE
Q 022835 23 RFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN-YGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~i~v~--d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~ 99 (291)
-+--+.|+|+ |.+.+++||+-+|+-+..... .++..+-+ +.+.+..+-+.+..- .+..+. .....-+.|.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k----~~FC~F~l-ys~~~~~iQlsLK~lp~~~~p~--p~esavLqF~ 200 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQK----EDFCFFTL-YSQPGLDIQLSLKQLPPGMSPE--PTESAVLQFR 200 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceee----CCcEEEEE-ecCCCeEEEEEeccCCCCCCcc--cccceEEEEE
Confidence 4667889999 999999999999998875432 22222222 233333333333221 122111 1233467899
Q ss_pred eCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 022835 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 100 v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
|.|+.++...|-. .+. +-+..+ +-..|||||.|-|
T Consensus 201 V~~igqLvpLLPn-pc~--------PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 201 VEDIGQLVPLLPN-PCS--------PISETR-WQTEDYDGNKILL 235 (236)
T ss_pred ecchhhhcccCCC-Ccc--------cccCCc-ceeeCCCCCEecc
Confidence 9999887655432 221 112222 5679999999853
No 189
>PF15067 FAM124: FAM124 family
Probab=95.03 E-value=0.59 Score=37.52 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCCceeEeeeeC--CchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccc-cccCcceeeEE
Q 022835 151 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVA 227 (291)
Q Consensus 151 ~~~~~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~ 227 (291)
...+.-+++.|. |.+.+.+||+-+|+-++...- .+ +-++.+-. . .+..+++....-+.. .+.+....-+-
T Consensus 126 G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k--~~--FC~F~lys-~--~~~~iQlsLK~lp~~~~p~p~esavLq 198 (236)
T PF15067_consen 126 GKEILRFTLYCSFDNYEDMVRFYELILQREPTQQK--ED--FCFFTLYS-Q--PGLDIQLSLKQLPPGMSPEPTESAVLQ 198 (236)
T ss_pred cccEEEEEEEecCCCHHHHHHHHHHHhccCcceee--CC--cEEEEEec-C--CCeEEEEEeccCCCCCCcccccceEEE
Confidence 345778899999 999999999999998875432 22 22222211 1 144555544322111 12333557899
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEE
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~ 278 (291)
|.|.|+-+.+..| -+.+..+ + ..-+-..|||||.|-+
T Consensus 199 F~V~~igqLvpLL-----Pnpc~PI---S------~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLL-----PNPCSPI---S------ETRWQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccC-----CCCcccc---c------CCcceeeCCCCCEecc
Confidence 9999987777766 2222111 1 1225679999999853
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=93.33 E-value=0.41 Score=33.21 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=37.9
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCCCcceEEEeeecCCCcccc-CCCCceEEEEEeC
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYD-IGTGFGHFAIATE 101 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~i~~~v~ 101 (291)
.+..+.|.|+| +++.+||+++||-.. + ..+.+.. +++ +...-.. ..=++..+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~------~---~~l~f~e-a~G-----------~DL~~~~~~twDLe~Lkf~V~ 62 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL------P---FFLTFQE-AQG-----------PDLTIENNETWDLEMLKFQVP 62 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH------T---TTEEEEE---------------CCGSS-TTSBSSEEEEEEEES
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC------C---ceEEEee-ccC-----------CccccCCCcEEeeEEEEEEec
Confidence 35678999999 889999999886211 0 0111111 000 0000000 0114555677887
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 022835 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 102 ---di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
|+.++.+++.+.+ +-.+ . ..+++.+.||.+..+-|
T Consensus 63 ~~~Dl~~L~~~le~~~--~fid-----K-k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 63 KDFDLAALKSHLEEQE--FFID-----K-KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp -S--HHHHHHHTTTS---EE-------T-T-SEEEEE-TTS-EEEE
T ss_pred CcccHHHHHHHhcccc--eEec-----C-CceEEEEECCcceEEEe
Confidence 5778888888743 2221 1 22347789999876644
No 191
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=80.04 E-value=3.1 Score=27.81 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhH
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~ 285 (291)
+..++.+.+ ++.|+++..-..... +++.++..|.||+.+|+.-++.-.
T Consensus 30 ~~~~~~~~l----~~~G~~v~~ve~~~~--g~yev~~~~~dG~~~ev~vD~~tG 77 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREVEFDDD--GCYEVEARDKDGKKVEVYVDPATG 77 (83)
T ss_pred CHHHHHHHH----HhcCCceEEEEEcCC--CEEEEEEEECCCCEEEEEEcCCCC
Confidence 457788888 999996544322122 357888999999999997665433
No 192
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.15 E-value=30 Score=25.82 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=33.7
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHHhh
Q 022835 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288 (291)
Q Consensus 226 ~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~~~ 288 (291)
+-+.++| .+.+++++..+.+.|.+- ....|++|-.|.-|+|+ +..+.+.|
T Consensus 81 ~~v~~~~-q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~-p~~l~e~~ 130 (151)
T COG3865 81 FQVACDD-QEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIV-PRVLGELM 130 (151)
T ss_pred EEEEcCC-HHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEc-HHHHHHHH
Confidence 3334456 777787777778887621 35679999999999994 44444443
No 193
>PRK11700 hypothetical protein; Provisional
Probab=75.62 E-value=31 Score=26.96 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=47.4
Q ss_pred cceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCC-----CcceEEEeeecCCCccccCCCCceE
Q 022835 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 21 ~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (291)
.-.++||.+.|++.+.|.+|-+..+.+-..- .++.-++..++.+.+... ..--.+++.++.. +.-+..|+-|
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~ll-Sen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEH 113 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELL-SENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEH 113 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhh-hccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceE
Confidence 4678999999999999999988866443322 122223344555443221 1112355655533 3335679999
Q ss_pred EEEEeC
Q 022835 96 FAIATE 101 (291)
Q Consensus 96 i~~~v~ 101 (291)
+-+.++
T Consensus 114 IElVlp 119 (187)
T PRK11700 114 IELVLP 119 (187)
T ss_pred EEEEec
Confidence 999885
No 194
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=71.88 E-value=12 Score=24.83 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+.+++.+.+.+.|+.+..- +...+|.+. +...+.+|..+|+.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~v-e~~~~g~ye-v~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV-EFDDDGCYE-VEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEE-EEcCCCEEE-EEEEECCCCEEEEEEcC
Confidence 6889999999999965543 221344454 77899999999997665
No 195
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=66.04 E-value=34 Score=24.57 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=53.2
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEecc------CCCceEEEEEecCCCCcc--eEEEeeecCCCccccCCC
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV------PEEKYSNAFLGFGPEQSH--FVVELTYNYGVTSYDIGT 91 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~------~~~~~~~~~l~~~~~~~~--~~l~~~~~~~~~~~~~~~ 91 (291)
+...|+=+...|++++.+.+-.++ -||++...... ..++.....-.+++.+.. .+..+... .
T Consensus 38 dt~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~e---------k 107 (142)
T COG4747 38 DTGDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTE---------K 107 (142)
T ss_pred cccCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeec---------C
Confidence 356677888999999999999999 89987644221 011100000001111111 11111111 1
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecC
Q 022835 92 GFGHFAIATEDVYKLVENIRAKGGNVTRE 120 (291)
Q Consensus 92 ~~~~i~~~v~di~~~~~~l~~~G~~~~~~ 120 (291)
.-.-+-++|+|++++.+.|+++|+.+...
T Consensus 108 ~KAlli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 108 QKALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred ceEEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 11235678999999999999999987653
No 196
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=63.14 E-value=54 Score=23.57 Aligned_cols=114 Identities=12% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCCCCceeEeeeeCCchhcHHHHHHhhCCeeeee
Q 022835 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRT 182 (291)
Q Consensus 103 i~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v~d~~~~~~fy~~~lG~~~~~~ 182 (291)
+..+...|.++|+.+.. +.+.|.. .+.-+-+.|++++.+.+-+.+ -||.+...
T Consensus 17 L~~~~~~L~eagINiRA------------~tiAdt~--------------dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINIRA------------FTIADTG--------------DFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCceEE------------EEecccc--------------CcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 56677888888866421 2333331 234455678888888888876 68876643
Q ss_pred ec------CCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEecchHHHHHHHHHHHHHhCCeeccC
Q 022835 183 VD------KPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQ 254 (291)
Q Consensus 183 ~~------~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~ 254 (291)
.. +..|+.....--. .+....++..+.. ..-..-..+.+.|+|++.+...| +++|+.+...
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl--~d~diNldYiYAF-----v~ek~KAlli~r~ed~d~~~~aL----ed~gi~~~~~ 136 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVL--GDADINLDYIYAF-----VTEKQKALLIVRVEDIDRAIKAL----EDAGIKLIGM 136 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHH--hhcCcCceeeeee-----eecCceEEEEEEhhHHHHHHHHH----HHcCCeecCh
Confidence 11 1111100000000 0011122222211 11113356889999999999999 9999988643
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.64 E-value=20 Score=22.01 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.0
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCee
Q 022835 92 GFGHFAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 92 ~~~~i~~~v~di~~~~~~l~~~G~~~ 117 (291)
+...+.+.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44567888999999999999999875
No 198
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=61.21 E-value=42 Score=24.05 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=43.2
Q ss_pred eEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCc---------------eEEEecchhhHHhhh
Q 022835 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW---------------KTVLVDNEDFLKELQ 289 (291)
Q Consensus 225 h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~---------------~ie~~~~~~~~~~~~ 289 (291)
.-+|....++.+.+.+....+..|+.+. +|-..|.....+-..+.|.|+ +|+|....+..++|.
T Consensus 23 L~S~d~~~Ld~~~~~Ii~~ak~~g~~v~-GPipLPtK~~~~tvlrSPhg~~kksreqfE~RiHKRlIdI~~~~~~v~~l~ 101 (115)
T PTZ00039 23 LTSKNLKSIEKVCADIITGAKEKNLKVT-GPVRMPVKTLRITTRKSPCGEGTNTWDRFEMRIYKRVIDLYSSSDVVTQIT 101 (115)
T ss_pred EEECCHHHHHHHHHHHHHHHHHcCCEeE-CCccCCceeEEEEeeeCCCCCCCchHHHheeeeeeEEEEEeCCHHHHHHHh
Confidence 3445555678888888777688888774 566666644455667899976 466777666666654
No 199
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.97 E-value=28 Score=22.62 Aligned_cols=49 Identities=16% Similarity=-0.042 Sum_probs=30.1
Q ss_pred EEecchHHHHHHHHHHHHHhCCeeccCCccCCCC-CceEEEEECCCCceE
Q 022835 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGL-NTKITSFVDPDGWKT 276 (291)
Q Consensus 228 f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~i 276 (291)
+...|--..+..+-..+.+.|..+..-.-...+. -..+||+.|.+|+.+
T Consensus 6 v~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 6 VDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 3344433334444444489999887653333332 247799999999987
No 200
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=59.88 E-value=83 Score=24.69 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred CcceeEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCC-----CCcceEEEeeecCCCccccCCCCce
Q 022835 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP-----EQSHFVVELTYNYGVTSYDIGTGFG 94 (291)
Q Consensus 20 ~~~~i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (291)
.--.++||.+.|++.+.+.++-+..+..-..-... .-++..++.+.+.. +..--.+++.++.. +.-+..|+-
T Consensus 31 ~~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen-~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Yp~eGWE 107 (185)
T PF06185_consen 31 SQYEIDHIALRVNSNETAERWKQALLQCGELLSEN-MINGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRYPQEGWE 107 (185)
T ss_dssp TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEE-EETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S--SS-EEE
T ss_pred cccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhc-eeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCCCCCCce
Confidence 35679999999999999999999987664433211 12223333332211 11122356665543 233566999
Q ss_pred EEEEEeC-CHHHHHHHHH
Q 022835 95 HFAIATE-DVYKLVENIR 111 (291)
Q Consensus 95 ~i~~~v~-di~~~~~~l~ 111 (291)
|+-|.++ +.++..++++
T Consensus 108 HIE~Vip~~~~~~~~~~~ 125 (185)
T PF06185_consen 108 HIEFVIPSDAQTLLEQAL 125 (185)
T ss_dssp EEEEE--S-GGGHHHHHH
T ss_pred EEEEEecCCHHHHHHHHH
Confidence 9999985 3444455543
No 201
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=57.25 E-value=6.8 Score=22.59 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=20.1
Q ss_pred CCCceeEeeeeCCchhcHHHHHHhh
Q 022835 151 PEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 151 ~~~~~hv~l~v~d~~~~~~fy~~~l 175 (291)
.+.++..++.+.+.++..+||+..|
T Consensus 9 igp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 9 IGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cCccccCCCccccccchhHHHHHHH
Confidence 3456677788899999999998765
No 202
>PHA02754 hypothetical protein; Provisional
Probab=54.97 E-value=23 Score=21.67 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchh
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~ 283 (291)
|+..+++.++.+|.++|+-+..-.--.. .+.-..+...||..+|+.+.+.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~--SGdkIVVi~aD~I~i~ls~Te~ 64 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT--SGDKIVVITADAIKIELSETEK 64 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe--cCCEEEEEEcceEEEEEEeeee
Confidence 5688899999999999986643222111 1233556678999999987653
No 203
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.17 E-value=28 Score=21.26 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.7
Q ss_pred ceeeEEEEecchHHHHHHHHHHHHHhCCee
Q 022835 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKI 251 (291)
Q Consensus 222 ~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~ 251 (291)
+...+.|.+++.+.+.+.| +++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L----~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVL----QERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHH----HHCCceE
Confidence 5677899999988888888 9999876
No 204
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=52.93 E-value=37 Score=29.00 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=34.3
Q ss_pred EEEEEE--e---CCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCC
Q 022835 25 LHAVYR--V---GDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE 70 (291)
Q Consensus 25 ~hv~i~--v---~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~ 70 (291)
+|++|. . ..++...+++.. ||+..+..-..+..+....++...+.
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p~d~ 85 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRPPDP 85 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEETSC
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecCCCC
Confidence 899998 2 367788889988 99999988777777666666665433
No 205
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.50 E-value=40 Score=21.17 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=19.9
Q ss_pred EEEEEe--CCHHHHHHHHHHcCCeeecC
Q 022835 95 HFAIAT--EDVYKLVENIRAKGGNVTRE 120 (291)
Q Consensus 95 ~i~~~v--~di~~~~~~l~~~G~~~~~~ 120 (291)
.+.|++ .+.+.+.+.|+++|+++..+
T Consensus 44 ~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 44 ILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344554 58889999999999987654
No 206
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.07 E-value=38 Score=21.28 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=20.5
Q ss_pred ceeeEEEEec--chHHHHHHHHHHHHHhCCeeccC
Q 022835 222 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 254 (291)
Q Consensus 222 ~~~h~~f~v~--d~~~~~~~l~~~~~~~G~~~~~~ 254 (291)
+...+.|.++ +.+++.+.| +++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 4445556654 666777777 9999998774
No 207
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=48.83 E-value=87 Score=21.76 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=40.4
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCc---------------eEEEecchhhHHhhh
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW---------------KTVLVDNEDFLKELQ 289 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~---------------~ie~~~~~~~~~~~~ 289 (291)
+|....++.+.+.+....+..|+.+. +|-..|....++-..+.|.|+ +|+|....+..++|.
T Consensus 9 S~d~~~Ld~~~~~I~~~ak~~g~~~~-GPipLPtk~~~~tv~rsPh~~~~ks~e~fE~r~hKRlidi~~~~~~~~~l~ 85 (99)
T TIGR01046 9 STNVRSLEKVCAQIKRIAEKTGVRMS-GPVPLPTKRLRVPTRKSPDGEGSKTWDRWEMRIHKRLIDIEADERALRQIM 85 (99)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCEEE-CCccCCcceEEEEeeeCCCCCCCcchHheEEEEEEEEEEEECCHHHHHHHh
Confidence 44445577777777666688888864 566666644555667899864 355666666666554
No 208
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.51 E-value=42 Score=27.00 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=24.7
Q ss_pred eCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccc
Q 022835 161 VGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAE 199 (291)
Q Consensus 161 v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 199 (291)
..|+.++..||.+.||++... ..+....+.|...++
T Consensus 144 sa~~~e~a~wy~dyLGleie~---~hgevikfiFTnIdp 179 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEA---GHGEVIKFIFTNIDP 179 (246)
T ss_pred hhccHHHHHHHHHhcCceeee---ccCceEEEEEeccCC
Confidence 357888899999999999653 234334555555444
No 209
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=47.37 E-value=1.2e+02 Score=22.82 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=45.2
Q ss_pred eEEEEEEeCCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEecCCC-----CcceEEEeeecCCCccccCCCCceEEEE
Q 022835 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 24 i~hv~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 98 (291)
++||.+.|++.+.+.+|-+..+.+-..-. ++.-++..+..+.+... ..--.+++.++.. +.-+..|+-|+-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llS-en~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLS-ENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhh-ccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEEE
Confidence 68999999999999999988765433222 22223334444443221 1112355655432 2235679999999
Q ss_pred EeC
Q 022835 99 ATE 101 (291)
Q Consensus 99 ~v~ 101 (291)
.++
T Consensus 79 Vlp 81 (149)
T cd07268 79 VIP 81 (149)
T ss_pred Eec
Confidence 885
No 210
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=45.24 E-value=46 Score=28.42 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=22.8
Q ss_pred cCcceeeEEEEe------cchHHHHHHHHHHHHHhCCeec
Q 022835 219 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 219 ~~~~~~h~~f~v------~d~~~~~~~l~~~~~~~G~~~~ 252 (291)
.|..++|++..| .|++++.+.+ +++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 677899999999 9999999999 99999887
No 211
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=42.47 E-value=27 Score=29.14 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=34.5
Q ss_pred eeeEEEEecc-hHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 223 YAQVAISTDD-VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 223 ~~h~~f~v~d-~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
...++..|+| +...++-| +.....|...|.+ .+.+.+..|+.++|.++|+...+
T Consensus 158 d~aiS~evdDsl~~il~lL----r~~D~sFrpvPh~--~d~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 158 DYAISREVDDSLPPILDLL----RSVDPSFRPVPHR--SDPAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhhhhHHhcccccHHHHHH----hccCcccccCCcc--CCCccceeeecCCCeEEEEeccC
Confidence 3456677765 55555555 5555555444433 33346677799999999999854
No 212
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.27 E-value=86 Score=25.32 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHhccCCEEEEEeccCCCceEEEEEec
Q 022835 32 GDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF 67 (291)
Q Consensus 32 ~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~ 67 (291)
-|..++..||.+.||+++..- .+......|-.+
T Consensus 145 a~~~e~a~wy~dyLGleie~~---hgevikfiFTnI 177 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG---HGEVIKFIFTNI 177 (246)
T ss_pred hccHHHHHHHHHhcCceeeec---cCceEEEEEecc
Confidence 367788999999999998532 233334444444
No 213
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=41.37 E-value=45 Score=20.35 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.3
Q ss_pred EEEEECCCCceEEEecch
Q 022835 265 ITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 265 ~~~~~DPdG~~ie~~~~~ 282 (291)
..-..+|||.++.|++..
T Consensus 28 ~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 28 PVAAFAPDGRLVALLEER 45 (56)
T ss_dssp -EEEE-TTS-EEEEEEEE
T ss_pred eEEEECCCCcEEEEEEcc
Confidence 345789999999999764
No 214
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=41.35 E-value=64 Score=22.65 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=35.8
Q ss_pred eeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCc
Q 022835 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 224 ~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
..-+|....+|...+.+....+..|+.+. +|-..|.....+-.++.|.|+
T Consensus 9 ~L~s~d~~~LD~~~~~Ive~akrtg~~v~-GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 9 RLKSFDHRLLDQVCREIVETAKRTGADVK-GPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHhCCeee-CCccCCCceEEEEEEeCCCCC
Confidence 34456666788888888777788898874 566666644566667999986
No 215
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.50 E-value=74 Score=20.82 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=23.6
Q ss_pred HHHhCCeeccCCccCCCC-CceEEEEECCCCceEE
Q 022835 244 TQELGGKITRQPGPIPGL-NTKITSFVDPDGWKTV 277 (291)
Q Consensus 244 ~~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~ie 277 (291)
|.+.|+.+....-...+. ...++|++|.+|..+.
T Consensus 22 l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 22 LTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 388999877653333221 2577999999999873
No 216
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=35.35 E-value=1.6e+02 Score=20.65 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=31.6
Q ss_pred EEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCc
Q 022835 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 227 ~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~ 274 (291)
+|....++.+...+....+..|+.+. +|-..|....++-..+.|.|+
T Consensus 10 S~d~~~Ld~~~~~I~~~~k~~g~~~~-GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 10 STNPEDLDEVCDQIKEIAEKTGVDMS-GPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred eCCHHHHHHHHHHHHHHHHHcCCeEE-CCCcCCceeEEEEeeeCCCCC
Confidence 34445577777777666688898774 566666544555667899865
No 217
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=32.90 E-value=88 Score=21.24 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=24.5
Q ss_pred eeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecch
Q 022835 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 224 ~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~ 282 (291)
.+..|.|+| .+++.+| +..+-. +.|+||.++.|...+
T Consensus 45 ~~a~FfV~D-~~tA~aL----k~vsrk-----------------I~~~dg~Ki~I~V~p 81 (88)
T PF09162_consen 45 NRAQFFVED-ASTASAL----KDVSRK-----------------ICDEDGFKISIFVNP 81 (88)
T ss_dssp TEEEEEESS-HHHHHHH----HTTTTT-----------------EEBTTSBEE--EEEE
T ss_pred CEEEEEeCC-HHHHHHH----HHCCCc-----------------eECCCCCEEEEEEcC
Confidence 478899999 8888888 655532 456777777665543
No 218
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=32.65 E-value=88 Score=24.14 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC-----CCCCceeEeeeeCCchhcHHHHHHhh
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP-----TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~-----~~~~~~hv~l~v~d~~~~~~fy~~~l 175 (291)
+..+++.+.+.+.-.--....+-.-.|.+. +.++++||..+.+.-... +++.-++..+...+-=+|.+++.+.=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~Gi-F~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEGI-FDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecceE-EEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 456676666655442211111111235554 778999998888866553 35667778888777777777776666
Q ss_pred CCeee
Q 022835 176 GMKLL 180 (291)
Q Consensus 176 G~~~~ 180 (291)
||...
T Consensus 157 gWVa~ 161 (181)
T COG1791 157 GWVAI 161 (181)
T ss_pred Cceee
Confidence 66543
No 219
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.04 E-value=96 Score=20.56 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.1
Q ss_pred eEEEEEeCC----HHHHHHHHHHcCCeeec
Q 022835 94 GHFAIATED----VYKLVENIRAKGGNVTR 119 (291)
Q Consensus 94 ~~i~~~v~d----i~~~~~~l~~~G~~~~~ 119 (291)
..+.++|++ ++.+.+.|+++|+.+..
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 456678878 88999999999998653
No 220
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=31.61 E-value=1.2e+02 Score=20.19 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=16.9
Q ss_pred EEEeCCHHHHHHHHHhccCCEEEEE
Q 022835 28 VYRVGDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 28 ~i~v~d~~~~~~FY~~~lG~~~~~~ 52 (291)
.....+=..+.++|++ |||+...+
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3445577789999999 99998754
No 221
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=29.40 E-value=1.5e+02 Score=26.14 Aligned_cols=30 Identities=7% Similarity=0.155 Sum_probs=24.7
Q ss_pred cCcceeeEEEEecchHHHHHHHHHHHHHhC
Q 022835 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELG 248 (291)
Q Consensus 219 ~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G 248 (291)
..++..++++..+|.++.++.+.+.|+..|
T Consensus 351 i~~~liR~svGlE~~~dli~dl~~Al~~~~ 380 (380)
T PRK06176 351 IRDGLVRLSVGIEHEQDLLEDLEQAFAKIG 380 (380)
T ss_pred CCcCeEEEEeccCCHHHHHHHHHHHHhhcC
Confidence 346889999999999999999977766554
No 222
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.48 E-value=1.1e+02 Score=18.88 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.2
Q ss_pred EEEEeCCHHHHHHHHHHcCCee
Q 022835 96 FAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 96 i~~~v~di~~~~~~l~~~G~~~ 117 (291)
+-+.++|.+.+.+.|+++|+++
T Consensus 43 ~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 43 LRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEECCHHHHHHHHHHCCCEE
Confidence 4556688889999999999875
No 223
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=27.71 E-value=68 Score=17.21 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEECCCCceEEEecchhhHHhhh
Q 022835 265 ITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 265 ~~~~~DPdG~~ie~~~~~~~~~~~~ 289 (291)
.+++.+.+|..+.++...++...|+
T Consensus 25 ~~~v~~~~~~~~g~i~~~~l~~~~~ 49 (49)
T smart00116 25 RLPVVDEEGRLVGIVTRRDIIKALA 49 (49)
T ss_pred cccEECCCCeEEEEEEHHHHHHhhC
Confidence 4567788888899999888877664
No 224
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.05 E-value=1.7e+02 Score=18.23 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=19.5
Q ss_pred ceeeEEEEecchHHHHHHHHHHHHHhCCeec
Q 022835 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 222 ~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~ 252 (291)
...++.+++.+ .+..+.+.+.|+++|+++.
T Consensus 38 ~~v~v~ie~~~-~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPD-REDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHHHHcCCCcc
Confidence 55778888877 3444444445599998753
No 225
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=26.02 E-value=1.2e+02 Score=20.63 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.7
Q ss_pred ceEEEEECCCCceEEEecchhhHHhhhc
Q 022835 263 TKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 263 ~~~~~~~DPdG~~ie~~~~~~~~~~~~~ 290 (291)
...+...|-||-++-|..++++.++|++
T Consensus 45 ~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 45 DLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred cEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 3566788999999999999999999985
No 226
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=25.36 E-value=3.2e+02 Score=21.04 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=68.8
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCC---------------EEEEEEcCCCC----CCceeE
Q 022835 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGY---------------IFELIQRGPTP----EPLCQV 157 (291)
Q Consensus 97 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~---------------~iel~~~~~~~----~~~~hv 157 (291)
=+.+.|.+.+.++|.+.|......... .- .||..|++. ...+.-..+.. ..-..+
T Consensus 7 K~~v~d~~~~~~~L~~~g~~~~~~~~q-----~D-~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~ 80 (174)
T TIGR00318 7 KAKIPDKEKVVEKLKNKGFKFIKKEFQ-----HD-IYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEI 80 (174)
T ss_pred EEEcCCHHHHHHHHHhcCcccccccce-----EE-EeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEE
Confidence 456789999999999999764332111 00 333333321 11122111111 112336
Q ss_pred eeeeCCchhcHHHHHHhhCCeeeeeecCCCcceeEEEecccccccceeEeeccccCccccccCcceeeEEEEec---chH
Q 022835 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVY 234 (291)
Q Consensus 158 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~---d~~ 234 (291)
.+.|.|.+++.+.+. .||+++...... . ...+.++ +..+.+.... ..| .+.-+..-++ ++.
T Consensus 81 e~~v~d~~~~~~iL~-~LG~~~~~~v~K--~-R~~~~l~------~~~i~lD~v~-----~lG-~FvEIE~~~~~~~~~~ 144 (174)
T TIGR00318 81 EFKIEDIENALQILK-KLGFKKVYEVIK--K-RRIYQTN------ELNVSIDDVE-----GLG-FFLEIEKIINNINDKD 144 (174)
T ss_pred EEEECCHHHHHHHHH-HCCCeEEEEEEE--E-EEEEEEC------CEEEEEEccC-----CCc-cEEEEEEecCCccchH
Confidence 688899999999997 599997544321 0 0112222 2233332110 012 3334455444 456
Q ss_pred HHHHHHHHHHHHhCC
Q 022835 235 KSAEVVNLVTQELGG 249 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~ 249 (291)
++.+.+...++.+|+
T Consensus 145 ~~~~~i~~~~~~LGl 159 (174)
T TIGR00318 145 LALEEIFEIINQLGI 159 (174)
T ss_pred HHHHHHHHHHHHcCC
Confidence 777777777788887
No 227
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=24.71 E-value=1.5e+02 Score=17.20 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceEEEecchhhHHhhh
Q 022835 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~ie~~~~~~~~~~~~ 289 (291)
++.++.+.+ ++.+. +.+.+.|.+|..+.++...++...|.
T Consensus 17 ~l~~~~~~~----~~~~~--------------~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 17 SLEEALEIM----RKNGI--------------SRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp BHHHHHHHH----HHHTS--------------SEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred cHHHHHHHH----HHcCC--------------cEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 467777777 77763 45778999999999999999988763
No 228
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=24.07 E-value=1.3e+02 Score=20.88 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.++.++..+|.+.|+. ..+.|++|+..||-...
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgtnt 53 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELGTNT 53 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecCCCe
Confidence 5788899999998854 45789999998875544
No 229
>PTZ00330 acetyltransferase; Provisional
Probab=23.63 E-value=1.2e+02 Score=22.06 Aligned_cols=26 Identities=12% Similarity=0.409 Sum_probs=18.7
Q ss_pred eeEEEEEEeCCHHHHHHHHHhccCCEEEE
Q 022835 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLR 51 (291)
Q Consensus 23 ~i~hv~i~v~d~~~~~~FY~~~lG~~~~~ 51 (291)
++..+.+.++ +.+.+||++ +||+...
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 3445555554 579999999 9999754
No 230
>PRK00969 hypothetical protein; Provisional
Probab=23.15 E-value=3.8e+02 Score=24.75 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC------CCCCceeEeeeeCCchhcHHHHHHh
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKA 174 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~------~~~~~~hv~l~v~d~~~~~~fy~~~ 174 (291)
-+.+++.+.|.+.|++........++ .. +.-++|.- .+++..... +...+..+.|.-.+..++..|++++
T Consensus 324 ~t~~eA~~~~~~~gIel~~eg~~~dd--aV-VV~Q~P~~-TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~ 399 (508)
T PRK00969 324 LTLKEAEELLEKLGIELEKEGYDGDD--AV-VVEQTPET-TLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKV 399 (508)
T ss_pred CCHHHHHHHHHhCCcEEEecCCCCCC--cE-EEecCCch-HHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHh
Confidence 36889999999999997754322222 11 22344532 333333221 2456899999989999999999999
Q ss_pred hCCeee
Q 022835 175 LGMKLL 180 (291)
Q Consensus 175 lG~~~~ 180 (291)
.|++..
T Consensus 400 tGL~~~ 405 (508)
T PRK00969 400 TGLKTK 405 (508)
T ss_pred cCCccc
Confidence 999844
No 231
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.58 E-value=79 Score=20.12 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=16.7
Q ss_pred eeEEEEEEeC-CHHHHHHHHHhccCCE
Q 022835 23 RFLHAVYRVG-DLDRTIKFYTECFGMK 48 (291)
Q Consensus 23 ~i~hv~i~v~-d~~~~~~FY~~~lG~~ 48 (291)
++..+.+.|. +-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 4556666655 33458999998 8875
No 232
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=22.57 E-value=2.8e+02 Score=19.41 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEE--ECCCCCE--EEEEEcCCCCCCceeEeeeeCCchhcHHHHH
Q 022835 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV--KDPDGYI--FELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (291)
Q Consensus 101 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~--~dp~G~~--iel~~~~~~~~~~~hv~l~v~d~~~~~~fy~ 172 (291)
.+.+++.++|+++++-.... +..+++... +|+ ++..|.. +|+.-.. ...-..+.+.+.+.+.+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~-~~~~~~~~~-~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIAS-GKVDNGQKF-FYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEE-EECTT-EEE-EEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEec-CCCCccccE-EEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 58999999999999986643 233333433 443 5566544 3443333 3347789999999876666654
No 233
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=22.13 E-value=1.4e+02 Score=20.26 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=21.4
Q ss_pred cceeeEEEEecchHHHHHHHHHHHHHhCCeecc
Q 022835 221 NAYAQVAISTDDVYKSAEVVNLVTQELGGKITR 253 (291)
Q Consensus 221 ~~~~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~ 253 (291)
.+...++|.|++ .+..+.+..+|++.|+++..
T Consensus 49 ~a~vlvgi~v~~-~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 49 FARVLVGIEVPD-AEDLEELIERLKALGYPYED 80 (91)
T ss_dssp CSEEEEEEE-SS-THHHHHHHHHHTSSS-EEEC
T ss_pred eeeEEEEEEeCC-HHHHHHHHHHHHHcCCCeEE
Confidence 367889999997 33356666666999988754
No 234
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=22.05 E-value=2.1e+02 Score=23.79 Aligned_cols=42 Identities=24% Similarity=0.141 Sum_probs=28.8
Q ss_pred ecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCCCceE
Q 022835 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKT 276 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~i 276 (291)
+.|+..-.+.+.+.|+++|+++ .+..... -++|+.||+++.+
T Consensus 143 t~D~~~h~~~i~k~wk~rgi~F--~~~k~sl---ISV~~h~~d~~~l 184 (250)
T PF14133_consen 143 TKDIKVHAEKIQKYWKERGIKF--NNDKASL---ISVFLHDPDDNSL 184 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCcee--CCCceEE---EEEEEEcCCCCeE
Confidence 4577888888888899999999 3333222 3466777776543
No 235
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=21.61 E-value=1.3e+02 Score=22.57 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEEeC-CHHHHHHHHHhccCCEEEEEec
Q 022835 25 LHAVYRVG-DLDRTIKFYTECFGMKLLRKRD 54 (291)
Q Consensus 25 ~hv~i~v~-d~~~~~~FY~~~lG~~~~~~~~ 54 (291)
..+.+.|+ +=..++.||++ +||+......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 45555555 33499999999 9999876533
No 236
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.00 E-value=2.7e+02 Score=24.55 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=25.0
Q ss_pred cCcceeeEEEEecchHHHHHHHHHHHHHhC
Q 022835 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELG 248 (291)
Q Consensus 219 ~~~~~~h~~f~v~d~~~~~~~l~~~~~~~G 248 (291)
..++..++++..+|.++.++.+.+.|...|
T Consensus 348 i~~~liR~svGlE~~~dl~~dl~~al~~~~ 377 (378)
T TIGR01329 348 LPEDLVRLSVGIEDVDDLISDLDIAFVTAP 377 (378)
T ss_pred CCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence 346889999999999999999977776554
No 237
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.84 E-value=3.5e+02 Score=20.83 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=34.3
Q ss_pred CceEEEEEECCCCCEEEEEEcCCC-----CCCceeEeeeeCCchhcHHHHHHh
Q 022835 127 GTTHIAFVKDPDGYIFELIQRGPT-----PEPLCQVMLRVGDLGRSIKFYEKA 174 (291)
Q Consensus 127 g~~~~~~~~dp~G~~iel~~~~~~-----~~~~~hv~l~v~d~~~~~~fy~~~ 174 (291)
|.+. +-++|-++..|.++-...+ ++-.+-.+....|.-++.+||..-
T Consensus 102 GtgY-fDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~ 153 (179)
T KOG2107|consen 102 GTGY-FDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGE 153 (179)
T ss_pred cceE-EeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCC
Confidence 4443 5579999999998766643 344555778888899999999653
No 238
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=20.66 E-value=2.4e+02 Score=19.21 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=24.8
Q ss_pred eeEEEEecchHHHHHHHHHHHHHhCCeeccCCccCCCCCceEEEEECCC
Q 022835 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD 272 (291)
Q Consensus 224 ~h~~f~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DPd 272 (291)
.|+-|.+++ ++..+.+...+...|++..... + .+...+|++|.+
T Consensus 22 YhLEi~~~~-~e~a~~l~~lL~~~~i~~k~~~--r--~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFND-EEFAEQLKELLNKFGINAKIIK--R--KNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES--HHHHHHHHHHHHHH----EEEE--E--SSEEEEEE--HH
T ss_pred eEEEEecCC-HHHHHHHHHHHHHcCCCceeee--e--cCceEEEEcCHH
Confidence 899999999 7778888788888888654321 1 135788888754
Done!