Query 022837
Match_columns 291
No_of_seqs 298 out of 1535
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 11:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 100.0 4.5E-32 1.5E-36 226.9 13.5 165 32-197 3-178 (178)
2 3krm_A Insulin-like growth fac 100.0 6.4E-30 2.2E-34 210.8 16.5 157 34-196 2-158 (163)
3 2jzx_A Poly(RC)-binding protei 100.0 2.7E-30 9.3E-35 212.5 12.9 157 32-195 2-160 (160)
4 1j4w_A FUSE binding protein; s 100.0 2.1E-29 7.2E-34 210.0 14.9 156 34-192 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 100.0 3.8E-29 1.3E-33 206.3 14.9 156 35-194 2-160 (164)
6 2anr_A Neuro-oncological ventr 99.9 1.5E-23 5E-28 175.2 4.4 138 120-290 4-141 (178)
7 3krm_A Insulin-like growth fac 99.9 4.7E-23 1.6E-27 169.6 7.0 120 122-290 3-122 (163)
8 2qnd_A FMR1 protein; KH domain 99.9 2.6E-22 9E-27 161.7 10.6 137 34-194 3-142 (144)
9 2jvz_A KH type-splicing, FAR u 99.9 2E-22 6.7E-27 166.0 9.1 127 122-290 2-128 (164)
10 1j4w_A FUSE binding protein; s 99.9 1.5E-22 5.1E-27 168.4 5.0 138 122-290 3-141 (174)
11 3n89_A Defective in GERM LINE 99.8 1.4E-21 4.6E-26 178.5 9.3 197 28-290 23-225 (376)
12 2jzx_A Poly(RC)-binding protei 99.8 2.9E-22 1E-26 164.4 2.4 124 120-290 3-126 (160)
13 2e3u_A PH-DIM2P, hypothetical 99.8 1.1E-19 3.9E-24 155.4 10.7 146 34-197 33-194 (219)
14 1tua_A Hypothetical protein AP 99.7 1.3E-17 4.5E-22 139.3 9.8 143 36-197 5-163 (191)
15 1dtj_A RNA-binding neurooncolo 99.7 5E-17 1.7E-21 116.5 8.0 73 122-194 3-75 (76)
16 1dtj_A RNA-binding neurooncolo 99.7 8.8E-17 3E-21 115.2 8.1 74 34-107 2-75 (76)
17 2axy_A Poly(RC)-binding protei 99.7 1.3E-16 4.4E-21 113.4 7.3 71 32-107 2-72 (73)
18 2axy_A Poly(RC)-binding protei 99.7 7.9E-17 2.7E-21 114.5 6.0 71 120-195 3-73 (73)
19 1zzk_A Heterogeneous nuclear r 99.6 5.2E-16 1.8E-20 112.8 8.7 72 120-194 5-76 (82)
20 2p2r_A Poly(RC)-binding protei 99.6 2.1E-16 7E-21 113.3 6.3 73 120-195 3-75 (76)
21 1wvn_A Poly(RC)-binding protei 99.6 3E-16 1E-20 114.1 7.0 73 120-195 4-76 (82)
22 2hh2_A KH-type splicing regula 99.6 3.8E-16 1.3E-20 119.2 8.0 74 123-196 8-81 (107)
23 1ec6_A RNA-binding protein NOV 99.6 3.2E-16 1.1E-20 115.2 7.2 75 34-108 2-76 (87)
24 1ec6_A RNA-binding protein NOV 99.6 1.8E-16 6.3E-21 116.5 5.7 76 122-197 3-78 (87)
25 2p2r_A Poly(RC)-binding protei 99.6 5.9E-16 2E-20 110.9 7.2 73 33-108 3-75 (76)
26 1zzk_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 109.8 9.3 73 33-108 5-77 (82)
27 1wvn_A Poly(RC)-binding protei 99.6 1.8E-15 6.1E-20 110.0 8.1 73 33-108 4-76 (82)
28 2opv_A KHSRP protein; KH domai 99.6 3.7E-15 1.3E-19 109.0 9.6 75 119-194 11-85 (85)
29 1j5k_A Heterogeneous nuclear r 99.6 8E-16 2.7E-20 113.5 5.7 73 119-194 11-83 (89)
30 1x4n_A FAR upstream element bi 99.6 1.8E-15 6E-20 112.4 7.5 75 119-196 12-86 (92)
31 1j5k_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 111.6 6.9 76 30-108 9-84 (89)
32 1x4n_A FAR upstream element bi 99.6 5.6E-15 1.9E-19 109.7 9.4 73 33-108 13-85 (92)
33 2opv_A KHSRP protein; KH domai 99.6 1.1E-14 3.9E-19 106.4 10.1 76 30-106 9-84 (85)
34 1x4m_A FAR upstream element bi 99.6 2.7E-15 9.1E-20 111.9 6.6 78 118-196 11-88 (94)
35 2hh2_A KH-type splicing regula 99.6 4.2E-15 1.4E-19 113.4 7.8 73 36-108 8-80 (107)
36 1we8_A Tudor and KH domain con 99.6 3.3E-15 1.1E-19 113.4 6.7 82 119-201 12-93 (104)
37 2dgr_A Ring finger and KH doma 99.6 1.3E-15 4.5E-20 110.6 3.9 70 119-194 7-76 (83)
38 2hh3_A KH-type splicing regula 99.6 6E-15 2.1E-19 112.1 7.3 71 122-195 11-81 (106)
39 1x4m_A FAR upstream element bi 99.6 8.6E-15 2.9E-19 109.1 8.0 76 31-107 11-86 (94)
40 1we8_A Tudor and KH domain con 99.5 2.3E-14 7.7E-19 108.8 9.4 77 31-108 11-87 (104)
41 2dgr_A Ring finger and KH doma 99.5 4.8E-15 1.6E-19 107.6 5.3 70 32-107 7-76 (83)
42 2hh3_A KH-type splicing regula 99.5 1.6E-14 5.5E-19 109.7 7.8 71 35-108 11-81 (106)
43 2ctl_A Vigilin; K homology typ 99.5 3E-14 1E-18 106.6 6.7 76 29-106 11-86 (97)
44 2cte_A Vigilin; K homology typ 99.5 2.7E-14 9.1E-19 106.4 6.1 72 119-195 14-85 (94)
45 1vig_A Vigilin; RNA-binding pr 99.5 2.7E-14 9.2E-19 100.7 5.8 67 121-192 4-70 (71)
46 2ctl_A Vigilin; K homology typ 99.5 4.7E-14 1.6E-18 105.6 7.4 72 121-194 16-87 (97)
47 2qnd_A FMR1 protein; KH domain 99.5 8.9E-15 3.1E-19 117.5 2.4 102 121-290 3-105 (144)
48 2e3u_A PH-DIM2P, hypothetical 99.5 6.4E-15 2.2E-19 125.9 1.5 118 120-290 32-166 (219)
49 2ctm_A Vigilin; K homology typ 99.5 7.6E-14 2.6E-18 104.0 7.0 73 118-194 13-85 (95)
50 1vig_A Vigilin; RNA-binding pr 99.4 1.2E-13 4.1E-18 97.4 6.4 67 33-104 3-69 (71)
51 2ctf_A Vigilin; K homology typ 99.4 3.7E-15 1.3E-19 112.5 -1.8 88 87-195 5-93 (102)
52 2cte_A Vigilin; K homology typ 99.4 1.6E-13 5.6E-18 102.1 6.9 72 32-108 14-85 (94)
53 2ctm_A Vigilin; K homology typ 99.4 2.2E-13 7.6E-18 101.4 7.5 73 31-107 13-85 (95)
54 3n89_A Defective in GERM LINE 99.4 4.4E-13 1.5E-17 122.4 8.7 155 34-195 105-262 (376)
55 2ctk_A Vigilin; K homology typ 99.4 2.4E-13 8.3E-18 102.9 5.6 71 120-195 15-85 (104)
56 2ctk_A Vigilin; K homology typ 99.3 1.7E-12 5.7E-17 98.3 6.7 69 34-107 16-84 (104)
57 2ctj_A Vigilin; K homology typ 99.3 1.6E-12 5.6E-17 96.6 5.7 72 118-194 13-85 (95)
58 2ctj_A Vigilin; K homology typ 99.2 1.6E-11 5.6E-16 91.2 6.8 73 30-107 12-85 (95)
59 1tua_A Hypothetical protein AP 99.2 1.5E-12 5E-17 108.7 0.9 115 123-290 5-135 (191)
60 2ctf_A Vigilin; K homology typ 99.1 1.1E-10 3.6E-15 88.0 7.3 65 34-106 26-91 (102)
61 2cpq_A FragIle X mental retard 99.0 1.4E-10 4.9E-15 84.8 4.5 65 119-191 12-78 (91)
62 1k1g_A SF1-BO isoform; splicin 98.9 5.1E-09 1.7E-13 82.2 8.5 75 120-194 5-99 (131)
63 2cpq_A FragIle X mental retard 98.9 1.2E-09 4.2E-14 79.8 4.5 63 32-102 12-76 (91)
64 2yqr_A KIAA0907 protein; struc 98.8 2.2E-08 7.4E-13 77.1 9.9 78 30-107 7-99 (119)
65 2yqr_A KIAA0907 protein; struc 98.8 1.1E-08 3.8E-13 78.7 7.7 74 121-194 11-99 (119)
66 1k1g_A SF1-BO isoform; splicin 98.8 1.1E-08 3.9E-13 80.1 7.5 75 33-107 5-99 (131)
67 3u1k_A Polyribonucleotide nucl 98.5 1.4E-07 4.7E-12 92.1 6.7 89 95-192 540-629 (630)
68 2bl5_A MGC83862 protein, quaki 98.5 2.4E-07 8E-12 73.1 6.2 74 122-195 2-102 (140)
69 2bl5_A MGC83862 protein, quaki 98.5 2.1E-07 7.3E-12 73.4 5.8 72 35-106 2-100 (140)
70 2cxc_A NUSA; transcription ter 98.2 6.9E-07 2.4E-11 70.9 2.7 105 35-159 36-140 (144)
71 4aid_A Polyribonucleotide nucl 98.1 2.1E-06 7.2E-11 84.7 4.4 90 96-194 544-634 (726)
72 3v69_A Protein filia; RNA-bind 98.0 1.6E-05 5.5E-10 61.6 7.3 66 36-105 57-122 (140)
73 3v69_A Protein filia; RNA-bind 97.9 2.5E-05 8.7E-10 60.4 6.7 68 123-194 57-124 (140)
74 3u1k_A Polyribonucleotide nucl 97.8 1.3E-05 4.3E-10 78.3 5.0 62 33-103 565-627 (630)
75 2asb_A Transcription elongatio 97.1 0.00034 1.2E-08 60.1 3.9 97 44-161 126-223 (251)
76 4aid_A Polyribonucleotide nucl 97.0 0.00024 8.3E-09 70.2 2.3 63 34-105 569-632 (726)
77 3cdi_A Polynucleotide phosphor 97.0 0.00029 9.9E-09 69.8 2.7 89 97-194 535-624 (723)
78 1k0r_A NUSA; two component arr 96.8 0.0006 2.1E-08 61.8 3.6 104 37-161 237-346 (366)
79 1e3p_A Guanosine pentaphosphat 96.7 0.00016 5.5E-09 71.9 -1.2 87 96-192 573-660 (757)
80 2cxc_A NUSA; transcription ter 96.0 0.0008 2.7E-08 53.2 -0.8 104 122-289 36-139 (144)
81 1hh2_P NUSA, N utilization sub 96.0 0.0047 1.6E-07 55.7 3.9 96 44-160 245-341 (344)
82 3cdi_A Polynucleotide phosphor 93.7 0.012 4E-07 58.3 0.0 60 34-102 559-619 (723)
83 1e3p_A Guanosine pentaphosphat 90.5 0.045 1.5E-06 54.4 -0.3 36 253-290 600-635 (757)
84 2asb_A Transcription elongatio 89.9 0.23 7.8E-06 42.6 3.6 41 35-75 184-224 (251)
85 1hh2_P NUSA, N utilization sub 87.1 0.37 1.3E-05 43.4 3.2 41 33-73 301-341 (344)
86 1k0r_A NUSA; two component arr 86.4 0.39 1.3E-05 43.5 3.0 41 34-74 306-346 (366)
87 2pt7_G HP1451, hypothetical pr 85.5 0.37 1.3E-05 38.1 2.2 67 36-109 34-100 (152)
88 2pt7_G HP1451, hypothetical pr 80.0 0.67 2.3E-05 36.6 1.6 67 122-195 33-99 (152)
89 1wh9_A 40S ribosomal protein S 78.0 0.81 2.8E-05 32.9 1.4 28 36-63 36-63 (92)
90 1wh9_A 40S ribosomal protein S 74.8 0.93 3.2E-05 32.6 1.0 29 122-150 35-63 (92)
91 3gku_A Probable RNA-binding pr 70.5 1.5 5.2E-05 36.9 1.4 67 37-108 94-160 (225)
92 3gku_A Probable RNA-binding pr 66.5 3.1 0.00011 34.9 2.6 67 123-194 93-159 (225)
93 2ba0_A Archeal exosome RNA bin 64.7 11 0.00038 31.6 5.7 56 38-102 139-194 (229)
94 4hhu_A OR280; engineered prote 63.7 43 0.0015 24.9 13.2 98 81-195 41-149 (170)
95 2xzm_C KH domain containing pr 60.0 6.6 0.00023 33.3 3.4 29 122-150 47-75 (243)
96 3iev_A GTP-binding protein ERA 55.2 11 0.00037 32.8 4.2 37 121-157 239-284 (308)
97 3iev_A GTP-binding protein ERA 54.5 5.6 0.00019 34.7 2.2 37 34-70 239-284 (308)
98 2z0s_A Probable exosome comple 52.5 42 0.0014 28.0 7.2 62 37-108 150-212 (235)
99 3u5c_D RP13, YS3, 40S ribosoma 51.1 5.7 0.00019 33.6 1.5 28 37-64 46-73 (240)
100 3j20_C 30S ribosomal protein S 49.8 5.7 0.00019 33.0 1.3 27 37-63 42-68 (210)
101 2xzm_C KH domain containing pr 48.4 7.6 0.00026 33.0 1.9 29 36-64 48-76 (243)
102 3u5c_D RP13, YS3, 40S ribosoma 47.1 6.2 0.00021 33.4 1.2 29 122-150 44-72 (240)
103 3iz6_B 40S ribosomal protein S 46.3 5.8 0.0002 33.3 0.9 29 36-64 45-73 (227)
104 3j20_C 30S ribosomal protein S 45.8 6.3 0.00021 32.7 1.0 28 122-149 40-67 (210)
105 3iz6_B 40S ribosomal protein S 42.8 6.4 0.00022 33.0 0.6 57 92-150 14-72 (227)
106 3r8n_C 30S ribosomal protein S 42.3 5.8 0.0002 32.8 0.3 34 37-70 63-100 (206)
107 2ba0_A Archeal exosome RNA bin 41.0 52 0.0018 27.3 6.0 59 124-191 138-196 (229)
108 3i1m_C 30S ribosomal protein S 39.3 6.8 0.00023 33.0 0.2 27 37-63 64-90 (233)
109 2zkq_c 40S ribosomal protein S 39.0 7 0.00024 33.1 0.3 30 36-65 45-74 (243)
110 1ytb_A Protein (tata binding p 38.9 1.5E+02 0.005 23.7 8.9 100 85-194 61-176 (180)
111 2vqe_C 30S ribosomal protein S 37.7 11 0.00037 32.0 1.2 28 37-64 64-91 (239)
112 3r8n_C 30S ribosomal protein S 37.5 6.7 0.00023 32.4 -0.1 35 123-157 62-100 (206)
113 3eik_A Tata-box-binding protei 37.3 1.7E+02 0.006 24.1 8.8 100 85-194 99-214 (218)
114 1rm1_A Tata-box binding protei 35.9 1.9E+02 0.0065 24.2 8.7 100 85-194 121-236 (240)
115 3dhx_A Methionine import ATP-b 35.6 64 0.0022 23.1 5.1 50 142-191 36-88 (106)
116 3i1m_C 30S ribosomal protein S 35.0 7.8 0.00027 32.7 -0.1 28 122-149 62-89 (233)
117 2zkq_c 40S ribosomal protein S 34.9 8.3 0.00028 32.7 0.0 29 122-150 44-72 (243)
118 3bbn_C Ribosomal protein S3; s 34.5 9.5 0.00033 31.8 0.4 29 37-65 72-100 (218)
119 1wf3_A GTP-binding protein; GT 34.1 15 0.00051 31.9 1.6 33 38-70 233-274 (301)
120 2xr1_A Cleavage and polyadenyl 33.5 53 0.0018 31.7 5.6 94 48-159 45-139 (640)
121 2vqe_C 30S ribosomal protein S 32.3 12 0.00041 31.6 0.7 28 123-150 63-90 (239)
122 2z0s_A Probable exosome comple 30.5 1.2E+02 0.0042 25.1 6.7 59 124-191 150-209 (235)
123 3n79_A PDUT; FES cluster, BMC 30.2 96 0.0033 25.0 5.8 131 58-194 21-160 (192)
124 3bbn_C Ribosomal protein S3; s 30.1 10 0.00034 31.7 -0.2 28 123-150 71-98 (218)
125 3af5_A Putative uncharacterize 29.3 38 0.0013 32.8 3.7 95 47-159 49-144 (651)
126 3dhx_A Methionine import ATP-b 28.4 81 0.0028 22.6 4.6 63 35-103 22-87 (106)
127 2ycb_A Beta-CAsp RNAse, cleava 28.1 56 0.0019 31.5 4.7 95 47-159 40-135 (636)
128 3nwg_A Microcompartments prote 27.8 2.1E+02 0.0073 22.7 7.4 129 60-194 23-160 (182)
129 2ja9_A Exosome complex exonucl 27.6 54 0.0019 26.1 3.8 57 37-102 93-151 (175)
130 1go3_E DNA-directed RNA polyme 27.5 36 0.0012 27.2 2.7 27 35-64 7-34 (187)
131 1ega_A Protein (GTP-binding pr 26.1 32 0.0011 29.7 2.3 62 94-155 195-265 (301)
132 1wf3_A GTP-binding protein; GT 24.9 14 0.00047 32.1 -0.3 35 123-157 231-274 (301)
133 1go3_E DNA-directed RNA polyme 24.3 48 0.0017 26.3 2.9 35 122-159 7-53 (187)
134 4e9j_A General secretion pathw 23.8 3E+02 0.01 22.6 10.5 86 83-191 149-240 (246)
135 4a4y_A Protein MXIG; protein b 21.2 77 0.0026 22.8 3.1 38 253-290 74-111 (146)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.98 E-value=4.5e-32 Score=226.94 Aligned_cols=165 Identities=35% Similarity=0.628 Sum_probs=140.0
Q ss_pred CCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcc
Q 022837 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHA 111 (291)
Q Consensus 32 ~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 111 (291)
+..++++|+||.+++|.||||+|++||+|+++|||+|+|++..+..|++.+|+|+|+|++++|.+|+.+|.+.+.+....
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 82 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQN 82 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCc
Confidence 46799999999999999999999999999999999999998777788899999999999999999999999877654221
Q ss_pred ccc-----------cCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHH
Q 022837 112 EDQ-----------ADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180 (291)
Q Consensus 112 ~~~-----------~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~ 180 (291)
... ........+.+|+||.+++|+||||+|++||+|+++|||+|+|.+.. ..++..++.|+|+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~-~~~~~~~~~v~I~G~~~~ 161 (178)
T 2anr_A 83 VAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP-DGINLQNRVVTVSGEPEQ 161 (178)
T ss_dssp -----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----CCEEEEEEESSHHH
T ss_pred cccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC-CCCCCCceEEEEEcCHHH
Confidence 100 00112347899999999999999999999999999999999998743 234567899999999999
Q ss_pred HHHHHHHHHHHHhcCcc
Q 022837 181 QMRALELILLKLSEDTL 197 (291)
Q Consensus 181 v~~A~~~I~~~l~e~~~ 197 (291)
|++|+.+|.++|+++|.
T Consensus 162 v~~A~~~I~~~i~e~p~ 178 (178)
T 2anr_A 162 NRKAVELIIQKIQEDPQ 178 (178)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999999763
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.97 E-value=6.4e-30 Score=210.85 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=133.6
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (291)
+-+++|+||.+.+|.||||+|++||+|+++|||+|+|++.. .+++.+|+|+|+|+++++.+|+.+|++.+.+....
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~-- 77 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFF-- 77 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS--
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc--
Confidence 35799999999999999999999999999999999998753 47889999999999999999999999888765211
Q ss_pred ccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 022837 114 QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193 (291)
Q Consensus 114 ~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~ 193 (291)
........+.+|.||.+++|+||||+|++|++|+++|||+|+|.++.. .....++.|+|+|++++|++|+.+|.++++
T Consensus 78 -~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 78 -GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-PDENDQVIVKIIGHFYASQMAQRKIRDILA 155 (163)
T ss_dssp -CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC-CCTTSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred -ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 112234568899999999999999999999999999999999976432 223345589999999999999999999998
Q ss_pred cCc
Q 022837 194 EDT 196 (291)
Q Consensus 194 e~~ 196 (291)
+..
T Consensus 156 ~~~ 158 (163)
T 3krm_A 156 QVK 158 (163)
T ss_dssp HHT
T ss_pred HHH
Confidence 743
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=212.45 Aligned_cols=157 Identities=29% Similarity=0.525 Sum_probs=136.3
Q ss_pred CCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcc
Q 022837 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHA 111 (291)
Q Consensus 32 ~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 111 (291)
+.++.++|+||.+++|.||||+|++||+|+++|||+|+|++. ++.+|.|+|+|+.+++.+|+.+|.+.+.+....
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~ 76 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISS 76 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTS
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccc
Confidence 357899999999999999999999999999999999999874 357899999999999999999999888776432
Q ss_pred cccc--CCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHH
Q 022837 112 EDQA--DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189 (291)
Q Consensus 112 ~~~~--~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~ 189 (291)
.... .......+.++.||.+++|+||||+|++|++|+++|||+|+|.++ ..++..++.|+|+|++++|++|+.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~ 154 (160)
T 2jzx_A 77 SMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD--MLPNSTERAITIAGIPQSIIECVKQIC 154 (160)
T ss_dssp CCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC--CSTTCCEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC--CCCCCCceEEEEEcCHHHHHHHHHHHH
Confidence 2111 112345899999999999999999999999999999999999863 345678999999999999999999999
Q ss_pred HHHhcC
Q 022837 190 LKLSED 195 (291)
Q Consensus 190 ~~l~e~ 195 (291)
+++.|+
T Consensus 155 ~~i~e~ 160 (160)
T 2jzx_A 155 VVMLET 160 (160)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998873
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.96 E-value=2.1e-29 Score=209.97 Aligned_cols=156 Identities=31% Similarity=0.404 Sum_probs=129.5
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (291)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.+.. +++.+|+|+|+|++++|.+|+.+|.+.+.+......
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---GTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---TSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCC
Confidence 46799999999999999999999999999999999998643 457899999999999999999999987765421100
Q ss_pred ---------------cc--CCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEc
Q 022837 114 ---------------QA--DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176 (291)
Q Consensus 114 ---------------~~--~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G 176 (291)
.. .......+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+...+..++.|+|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G 158 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG 158 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC
Confidence 00 0011246889999999999999999999999999999999998754444456789999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 022837 177 TLDEQMRALELILLKL 192 (291)
Q Consensus 177 ~~~~v~~A~~~I~~~l 192 (291)
++++|++|+.+|.++|
T Consensus 159 ~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 159 TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=206.30 Aligned_cols=156 Identities=24% Similarity=0.340 Sum_probs=131.1
Q ss_pred EEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhccc-c
Q 022837 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE-D 113 (291)
Q Consensus 35 ~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~-~ 113 (291)
++++|+||.+++|+||||+|++||+|+++|||+|++.++. ..++..+|.|+|+|++++|.+|+.+|.+.+.+..... .
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 6889999999999999999999999999999999998643 2356789999999999999999999998776542110 0
Q ss_pred cc--CCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 022837 114 QA--DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLK 191 (291)
Q Consensus 114 ~~--~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~ 191 (291)
.. .......+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.+ +...++.|+|+|++++|++|+.+|.++
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~ 157 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDL 157 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---TTSSEEEEEEESCHHHHHHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---CCCCcEEEEEEcCHHHHHHHHHHHHHH
Confidence 00 0011135688999999999999999999999999999999998743 244689999999999999999999999
Q ss_pred Hhc
Q 022837 192 LSE 194 (291)
Q Consensus 192 l~e 194 (291)
+++
T Consensus 158 i~~ 160 (164)
T 2jvz_A 158 LQS 160 (164)
T ss_dssp HHH
T ss_pred Hhh
Confidence 876
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.88 E-value=1.5e-23 Score=175.17 Aligned_cols=138 Identities=22% Similarity=0.312 Sum_probs=108.1
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccC
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS 199 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~ 199 (291)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+..+..++..+|.|+|+|++++|.+|+.+|.+++.+.+...
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCcc
Confidence 45899999999999999999999999999999999999875545567789999999999999999999999998865422
Q ss_pred CCCCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcceeEEeecCccceehcc
Q 022837 200 QTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVGMLLIILIAQPIICHFS 279 (291)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~ 279 (291)
... .+.. . .+ +.+ ........+.+|.||.+++|+|||| ||.+||+|+
T Consensus 84 ~~~-~~~~---------------~-~~-----~~~---------~~~~~~~~~~~i~Vp~~~vg~iIGk--gG~~Ik~i~ 130 (178)
T 2anr_A 84 AKT-EPVS---------------I-LQ-----PQT---------TVNPDRANQVKIIVPNSTAGLIIGK--GGATVKAIM 130 (178)
T ss_dssp -----------------------------------------------CGGGGEEEEEEEHHHHHHHHCG--GGHHHHHHH
T ss_pred ccC-Cccc---------------c-cC-----Ccc---------CCCCCCceEEEEEEchhheeeeECC--CcHHHHHHH
Confidence 100 0000 0 00 000 0011223568999999999999999 999999999
Q ss_pred ccccceEEeec
Q 022837 280 LSIYEEIRLNE 290 (291)
Q Consensus 280 ~~tga~i~~~~ 290 (291)
++|||+|+|.+
T Consensus 131 ~~tga~I~i~~ 141 (178)
T 2anr_A 131 EQSGAWVQLSQ 141 (178)
T ss_dssp HHSSCEEEECC
T ss_pred HHHCCEEEEeC
Confidence 99999999975
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.88 E-value=4.7e-23 Score=169.63 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=103.2
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccCCC
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~~~ 201 (291)
.+++|+||.+++|.||||+|++||+|+++|||+|+|.+.. .++..+|.|+|+|+++++.+|+.+|.+++.+...+.+
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~- 79 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGP- 79 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCS-
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccccc-
Confidence 5899999999999999999999999999999999998742 3567899999999999999999999999987532110
Q ss_pred CCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcceeEEeecCccceehcccc
Q 022837 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVGMLLIILIAQPIICHFSLS 281 (291)
Q Consensus 202 ~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~~~ 281 (291)
. .....+.+|.||.+++|+|||| ||.+|++|+++
T Consensus 80 -------------------~-------------------------~~~~~~~~i~vp~~~~g~iIGk--gG~~I~~i~~~ 113 (163)
T 3krm_A 80 -------------------K-------------------------EEVKLETHIRVPASAAGRVIGK--GGKTVNELQNL 113 (163)
T ss_dssp -------------------S-------------------------CCCCEEEEEEEETTTHHHHHCG--GGHHHHHHHHH
T ss_pred -------------------c-------------------------cCCceEEEEEcChhheeeEEcC--CChHHHHHHHH
Confidence 0 0001347899999999999999 99999999999
Q ss_pred ccceEEeec
Q 022837 282 IYEEIRLNE 290 (291)
Q Consensus 282 tga~i~~~~ 290 (291)
|||+|+|++
T Consensus 114 tga~I~i~~ 122 (163)
T 3krm_A 114 TAAEVVVPR 122 (163)
T ss_dssp HCCEEECCT
T ss_pred hCCeEEECC
Confidence 999999975
No 8
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.87 E-value=2.6e-22 Score=161.65 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=109.5
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (291)
.++.+|+||.+.+|++||++|++|++|++++| |++....+ ..++.+...++++.|.+|+.++. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~----~~~~~i~~~~~p~~v~~~~~~l~-----~----- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE----DTCTFHIYGEDQDAVKKARSFLE-----F----- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET----TTTEEEEEESSHHHHHHHHHHHC-----E-----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC----CchheeeccCCHHHHHHHHHhhh-----c-----
Confidence 46889999999999999999999999999999 44432221 24566666678999988866431 1
Q ss_pred ccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccc-eEEEecCCCCCCCCCc--eEEEEEcCHHHHHHHHHHHHH
Q 022837 114 QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA-VIKISRLDHSYYGLND--RLVTLTGTLDEQMRALELILL 190 (291)
Q Consensus 114 ~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa-~I~i~~~~~~~~~~~e--r~V~I~G~~~~v~~A~~~I~~ 190 (291)
...++.||.+++|++|||+|++||.|++.||| +|+|.+.++......+ +.|+|+|++++|++|+.+|.+
T Consensus 67 --------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~ 138 (144)
T 2qnd_A 67 --------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDY 138 (144)
T ss_dssp --------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred --------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHH
Confidence 13789999999999999999999999999997 8999985443211223 458999999999999999999
Q ss_pred HHhc
Q 022837 191 KLSE 194 (291)
Q Consensus 191 ~l~e 194 (291)
+|.+
T Consensus 139 ~l~~ 142 (144)
T 2qnd_A 139 HLNY 142 (144)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 9
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=165.97 Aligned_cols=127 Identities=19% Similarity=0.271 Sum_probs=103.2
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccCCC
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~~~ 201 (291)
++.+|+||.+++|+||||+|++||+|+++|||+|++.++. ..++..+|.|+|+|++++|.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~-- 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG-- 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCC--
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCC--
Confidence 5789999999999999999999999999999999998643 2345678999999999999999999999998753210
Q ss_pred CCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcceeEEeecCccceehcccc
Q 022837 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVGMLLIILIAQPIICHFSLS 281 (291)
Q Consensus 202 ~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~~~ 281 (291)
|. |. ..| ++. ...+.+|.||.+++|+|||| ||.+|++|+++
T Consensus 79 ------~~----------~~----------~~~-----~~~------~~~~~~i~vp~~~~g~iIGk--~G~~I~~i~~~ 119 (164)
T 2jvz_A 79 ------FG----------DR----------NEY-----GSR------IGGGIDVPVPRHSVGVVIGR--SGEMIKKIQND 119 (164)
T ss_dssp ------CS----------SC----------SSC-----TTS------CSSSBCCEEETTTHHHHHCS--SSHHHHHHHHH
T ss_pred ------CC----------Cc----------ccc-----CCC------CCceEEEEEChhhccccCCC--CcHhHHHHHHH
Confidence 00 00 011 110 01348899999999999999 99999999999
Q ss_pred ccceEEeec
Q 022837 282 IYEEIRLNE 290 (291)
Q Consensus 282 tga~i~~~~ 290 (291)
|||+|+|++
T Consensus 120 tg~~I~i~~ 128 (164)
T 2jvz_A 120 AGVRIQFKQ 128 (164)
T ss_dssp TCCEEEECC
T ss_pred HCCeEEEeC
Confidence 999999975
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.86 E-value=1.5e-22 Score=168.43 Aligned_cols=138 Identities=21% Similarity=0.215 Sum_probs=101.4
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccCCC
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~~~ 201 (291)
.+.+|+||.+++|+||||+|++||+|+++|||+|+|.+.+ ++..+|.|+|+|++++|.+|+.+|.+++.+.....
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~-- 77 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---GTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGN-- 77 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---TSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCC--
Confidence 5789999999999999999999999999999999998633 34578999999999999999999999998743110
Q ss_pred CCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCeEEEeecCCCcceeEEeecCccceehccc
Q 022837 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGR-KFQNNKVLLPWPLNPVGMLLIILIAQPIICHFSL 280 (291)
Q Consensus 202 ~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~~ 280 (291)
+++. + |.. ..++ +.. .+...+ .......+|.||.+++|+|||| ||.+||+|++
T Consensus 78 ------~~~~------~-p~~---------~~~~-~~~-~~~~~~~~~~~~~~~i~vp~~~~g~iIGk--gG~~Ik~I~~ 131 (174)
T 1j4w_A 78 ------PGGP------G-PGG---------RGRG-RGQ-GNWNMGPPGGLQEFNFIVPTGKTGLIIGK--GGETIKSISQ 131 (174)
T ss_dssp --------------------------------------------------CEEEEEEETTTHHHHHCG--GGHHHHHHHH
T ss_pred ------CCCC------C-CCC---------CCCC-CCC-CccccCCCCCcEEEEEEEChHHcCeeECC--CchHHHHHHH
Confidence 0000 0 000 0000 000 000001 1123468999999999999999 9999999999
Q ss_pred cccceEEeec
Q 022837 281 SIYEEIRLNE 290 (291)
Q Consensus 281 ~tga~i~~~~ 290 (291)
+|||+|+|++
T Consensus 132 ~tga~I~i~~ 141 (174)
T 1j4w_A 132 QSGARIELQR 141 (174)
T ss_dssp HHCCEEEEEC
T ss_pred HHCCEEEECC
Confidence 9999999975
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.85 E-value=1.4e-21 Score=178.46 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=139.6
Q ss_pred CCCCCCcEEEEEEecccccceeeccCC--hhHHHHHHHhCCcEEEcCCC--CCCCCCCceEEEEecCHHHHHHHHHHHHH
Q 022837 28 SDPTEKPTYIRFLVSNPLAGAVIGKGG--STINDFQSQSGARIQLSRSH--EFFPGTTDRIIMISGTIDEILRAVDLVID 103 (291)
Q Consensus 28 ~~~~~~~~~~rilvp~~~vG~IIGk~G--~~Ik~I~~~tga~I~v~~~~--~~~p~~~er~v~I~G~~~~v~~A~~~I~~ 103 (291)
-+.....+++++.||..+++.||||+| ++|++|+++|||+|+|++.+ ...+......|+|+|.+++|++|+.+|.+
T Consensus 23 le~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~ 102 (376)
T 3n89_A 23 IEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRR 102 (376)
T ss_dssp CCCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred EEecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHh
Confidence 355677899999999999999999999 99999999999999998754 21122345789999999999999999985
Q ss_pred HHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHH
Q 022837 104 KLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183 (291)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~ 183 (291)
.+ ..+..+.+|...++. ..-+..|.+ ++..+++|.|+..... .+.....|+|+|...++..
T Consensus 103 l~---------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~-~~~~sd~V~IrG~~~nv~~ 163 (376)
T 3n89_A 103 NC---------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK-NGIVTTYLRITAREKNQHE 163 (376)
T ss_dssp SC---------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC------CEEEEEEEEEGGGHHH
T ss_pred cC---------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc-cCCCCCEEEEEcChhhHHH
Confidence 21 235666666554332 122334554 5678999999764221 1113567999999876666
Q ss_pred HHHHHHHHHhcCcccCCCCCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcc
Q 022837 184 ALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVG 263 (291)
Q Consensus 184 A~~~I~~~l~e~~~~~~~~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG 263 (291)
|++.+..+++.-.... . ......+.+|.|+.+++.
T Consensus 164 akeA~~~Ll~~l~~~e--~-------------------------------------------~~~~~~s~~v~V~~~~H~ 198 (376)
T 3n89_A 164 LIEAAKRLNEILFRES--P-------------------------------------------APENNFTLHFTLSTYYVD 198 (376)
T ss_dssp HHHHHHHHHHHHCC----C-------------------------------------------CCSSCEEEEEEEEGGGHH
T ss_pred HHHHHHHHHHHHHhhh--c-------------------------------------------ccccceEEEEEeCHHHHH
Confidence 5555444443311010 0 000114589999999999
Q ss_pred eeEEeecCccc--eehccccccceEEeec
Q 022837 264 MLLIILIAQPI--ICHFSLSIYEEIRLNE 290 (291)
Q Consensus 264 ~iIG~~~gg~~--ik~~~~~tga~i~~~~ 290 (291)
.|||| ||.+ |++|+++||++|+|++
T Consensus 199 ~IIGk--~G~n~~IkkIr~eTGv~I~FP~ 225 (376)
T 3n89_A 199 QVLGS--SSTAQLMPVIERETTTIISYPC 225 (376)
T ss_dssp HHTCC--TTSCCHHHHHHHHHTCEEECC-
T ss_pred HhhcC--CCcchHHHHHHHhhCCEEECCC
Confidence 99999 9855 5999999999999985
No 12
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-22 Score=164.39 Aligned_cols=124 Identities=26% Similarity=0.336 Sum_probs=102.5
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccC
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS 199 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~ 199 (291)
..++++|+||.+++|.||||+|++||+|+++|||+|+|++. +..+|.|+|+|+.++|.+|+.+|.+++.++....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhcccc
Confidence 45789999999999999999999999999999999999873 3468999999999999999999999998742210
Q ss_pred CCCCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcceeEEeecCccceehcc
Q 022837 200 QTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVGMLLIILIAQPIICHFS 279 (291)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~ 279 (291)
++ .. + .......+.+|.||.+++|+|||| ||.+|++|+
T Consensus 78 --------~~-----------~~-----------~----------~~~~~~~~~~i~vp~~~~g~iIGk--gG~~Ik~i~ 115 (160)
T 2jzx_A 78 --------MT-----------NS-----------T----------AASRPPVTLRLVVPASQCGSLIGK--GGCKIKEIR 115 (160)
T ss_dssp --------CC-----------SS-----------S----------CCCCCSEEEEEEEEHHHHHHHHCG--GGHHHHHHH
T ss_pred --------CC-----------CC-----------c----------cCCCCCEEEEEEEChhheeeEECC--CCHHHHHHH
Confidence 00 00 0 000012468999999999999999 999999999
Q ss_pred ccccceEEeec
Q 022837 280 LSIYEEIRLNE 290 (291)
Q Consensus 280 ~~tga~i~~~~ 290 (291)
++|||+|+|++
T Consensus 116 ~~tga~I~i~~ 126 (160)
T 2jzx_A 116 ESTGAQVQVAG 126 (160)
T ss_dssp HHHSSEECCCC
T ss_pred HHhCCeEEECC
Confidence 99999999974
No 13
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.80 E-value=1.1e-19 Score=155.38 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=111.6
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecC-----HHHHHHHHHHHHHHHhhh
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT-----IDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~-----~~~v~~A~~~I~~~i~~~ 108 (291)
+-..++.||.+.+|.|||++|.+|+.|+++|||+|++.. .++.|.|.++ ++++.+|+++|.+.+...
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~ 104 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--------ETGEVWITSTKETEDPLAVWKARDIVLAIGRGF 104 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccC
Confidence 346799999999999999999999999999999999963 2466888875 699999999998765211
Q ss_pred hccccccCCCCCceEEEEEecC-----------CccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcC
Q 022837 109 LHAEDQADDVGTKTKLRLIVPN-----------SSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT 177 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~VP~-----------~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~ 177 (291)
..........++.....+.++. ..+|+||||+|++|+.|++.|||+|.|.. +.|+|.|+
T Consensus 105 ~~e~g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~----------~~v~i~G~ 174 (219)
T 2e3u_A 105 SPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG----------KTVAIIGN 174 (219)
T ss_dssp CHHHHGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET----------TEEEEEEC
T ss_pred CccccceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC----------eEEEEEeC
Confidence 0000000000111122233332 26899999999999999999999999963 57999999
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q 022837 178 LDEQMRALELILLKLSEDTL 197 (291)
Q Consensus 178 ~~~v~~A~~~I~~~l~e~~~ 197 (291)
+++++.|+.+|.+++.+.++
T Consensus 175 ~~~i~~A~~~i~~li~g~~~ 194 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARGSPH 194 (219)
T ss_dssp HHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999987653
No 14
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.72 E-value=1.3e-17 Score=139.28 Aligned_cols=143 Identities=17% Similarity=0.239 Sum_probs=112.2
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEe-----cCHHHHHHHHHHHHHHHhhhhc
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMIS-----GTIDEILRAVDLVIDKLLTELH 110 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~-----G~~~~v~~A~~~I~~~i~~~~~ 110 (291)
.++++||.+.+|.|||++|++++.|++++|++|++.. .++.|+|. |++..+.+|.++|...... +.
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg-f~ 75 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG-FP 75 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT-CC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC-CC
Confidence 3699999999999999999999999999999999964 35777887 9999999999999754432 22
Q ss_pred cccccC-CCCCceEEEEEec----------CCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHH
Q 022837 111 AEDQAD-DVGTKTKLRLIVP----------NSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLD 179 (291)
Q Consensus 111 ~~~~~~-~~~~~~~~~i~VP----------~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~ 179 (291)
.++... ..++.....+.++ ....|+||||+|.+|+.|++.|||+|.|.. +.|.|.|+++
T Consensus 76 ~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----------~~v~i~G~~~ 145 (191)
T 1tua_A 76 PEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE----------YEVAIIGDYE 145 (191)
T ss_dssp HHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS----------SEEEEEEEHH
T ss_pred HHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC----------CEEEEEeChH
Confidence 111110 0111222233344 235899999999999999999999999964 4899999999
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 022837 180 EQMRALELILLKLSEDTL 197 (291)
Q Consensus 180 ~v~~A~~~I~~~l~e~~~ 197 (291)
+++.|+..|.+++...++
T Consensus 146 ~i~~Ar~~i~~li~g~~h 163 (191)
T 1tua_A 146 RAMAAKQAIEMLAEGRMH 163 (191)
T ss_dssp HHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 999999999999976543
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.69 E-value=5e-17 Score=116.52 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.1
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.++..++..++.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999999999865556677899999999999999999999999875
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.68 E-value=8.8e-17 Score=115.21 Aligned_cols=74 Identities=35% Similarity=0.627 Sum_probs=67.9
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
.++++|+||.+.+|.||||+|++|++|+++|||+|+|.++.+..|++.+|.|+|+|+++++.+|+.+|.+.+.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999876677888999999999999999999999977654
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.66 E-value=1.3e-16 Score=113.42 Aligned_cols=71 Identities=34% Similarity=0.628 Sum_probs=65.5
Q ss_pred CCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 32 ~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
+..+.++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++.+|+|+|+|+++++.+|+.+|.++|.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999874 36799999999999999999999988765
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.66 E-value=7.9e-17 Score=114.50 Aligned_cols=71 Identities=35% Similarity=0.579 Sum_probs=65.1
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+. +..+|.|+|+|+++++.+|+.+|.++|+|+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999874 347899999999999999999999999874
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.64 E-value=5.2e-16 Score=112.80 Aligned_cols=72 Identities=35% Similarity=0.491 Sum_probs=66.1
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|.+. .++..+|.|+|+|++++|++|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999999863 3456789999999999999999999999987
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=113.28 Aligned_cols=73 Identities=38% Similarity=0.467 Sum_probs=66.8
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .++..+|.|+|+|++++|++|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 34789999999999999999999999999999999999872 45668999999999999999999999999864
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.64 E-value=3e-16 Score=114.11 Aligned_cols=73 Identities=37% Similarity=0.451 Sum_probs=65.8
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|.+. .++..+|.|+|+|++++|++|+.+|.+++.++
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999873 34567999999999999999999999999886
No 22
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=119.18 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=66.6
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDT 196 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~ 196 (291)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+...+..++.|+|+|++++|++|+.+|.+++.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999875433334578999999999999999999999998854
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.64 E-value=3.2e-16 Score=115.21 Aligned_cols=75 Identities=36% Similarity=0.632 Sum_probs=69.2
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
.++++|+||.+.+|.||||+|++|++|+++|||+|+|.++.++.|++.+|.|+|+|+++++..|+.+|.+.+.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999999999999998767778889999999999999999999999887654
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.64 E-value=1.8e-16 Score=116.53 Aligned_cols=76 Identities=28% Similarity=0.385 Sum_probs=69.3
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcc
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTL 197 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~ 197 (291)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+.++..++..++.|+|+|+++++.+|+.+|.+++.+...
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999999999865555677899999999999999999999999987543
No 25
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.62 E-value=5.9e-16 Score=110.89 Aligned_cols=73 Identities=33% Similarity=0.540 Sum_probs=66.8
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+++++.+|+.+|.+.+.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 56899999999999999999999999999999999999863 46788999999999999999999999877654
No 26
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.62 E-value=1.9e-15 Score=109.78 Aligned_cols=73 Identities=34% Similarity=0.555 Sum_probs=66.3
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|+++++.+|+.+|.+.+.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999863 35678999999999999999999999877654
No 27
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.60 E-value=1.8e-15 Score=109.97 Aligned_cols=73 Identities=30% Similarity=0.519 Sum_probs=65.5
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+++++.+|+.+|.+.+.++
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999999999999999864 35678999999999999999999999877654
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=109.00 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=66.3
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
......+|.||.+++|+||||+|++||+|+++|||+|+|.++. ..+...+|.|+|+|+++++++|+.+|.+++.|
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSS-CSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCC-CCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3457889999999999999999999999999999999998743 22456789999999999999999999999865
No 29
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.60 E-value=8e-16 Score=113.55 Aligned_cols=73 Identities=36% Similarity=0.515 Sum_probs=66.9
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+. .++..+|.|+|+|++++|++|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999863 3456789999999999999999999999987
No 30
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.60 E-value=1.8e-15 Score=112.39 Aligned_cols=75 Identities=27% Similarity=0.333 Sum_probs=67.7
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDT 196 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~ 196 (291)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. ++..+|.|+|+|++++|++|+.+|.+++.+..
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 3457899999999999999999999999999999999998743 34578999999999999999999999998854
No 31
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.59 E-value=1.8e-15 Score=111.61 Aligned_cols=76 Identities=33% Similarity=0.515 Sum_probs=67.8
Q ss_pred CCCCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 30 ~~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
.....++++|+||.+.+|.||||+|++||+|+++|||+|+|++. .+++.+|.|+|+|+++++.+|+.+|.+.+.+.
T Consensus 9 ~~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 9 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp -CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 34567999999999999999999999999999999999999763 35678999999999999999999999877654
No 32
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.59 E-value=5.6e-15 Score=109.66 Aligned_cols=73 Identities=26% Similarity=0.445 Sum_probs=66.4
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
..++++|+||.+++|+||||+|++|++|+++|||+|+|.+.. ++..+|.|+|+|++++|.+|+.+|.+.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999998754 4668999999999999999999999877654
No 33
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=106.39 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHh
Q 022837 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106 (291)
Q Consensus 30 ~~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~ 106 (291)
........+|.||.+.+|+||||+|++||+|+++|||+|+|.++.. .+...+|.|+|+|+++++.+|+.+|.+.+.
T Consensus 9 ~g~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 9 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp CSCSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 3445688999999999999999999999999999999999987532 345679999999999999999999987653
No 34
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.57 E-value=2.7e-15 Score=111.85 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=68.6
Q ss_pred CCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCc
Q 022837 118 VGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDT 196 (291)
Q Consensus 118 ~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~ 196 (291)
....++.+|.||.+++|+||||+|++||+|+++|||+|+|.++... ....+|.|+|+|++++|++|+.+|.+++.+..
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ-NTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC-SSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC-CCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 3456899999999999999999999999999999999999874322 23478999999999999999999999998754
No 35
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=113.38 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=65.0
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
+++|+||.+++|+||||+|++||+|+++|||+|+|.++.+...+..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999987644334457899999999999999999999877654
No 36
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.57 E-value=3.3e-15 Score=113.43 Aligned_cols=82 Identities=37% Similarity=0.434 Sum_probs=70.9
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCccc
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLY 198 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~ 198 (291)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+.. ...++.|+|+|+.++|++|+.+|.+++.+++.+
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~~~ 90 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-LLLSRLIKISGTQKEVAAAKHLILEKVSEDEEL 90 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhChHH
Confidence 4567899999999999999999999999999999999998744321 236899999999999999999999999987765
Q ss_pred CCC
Q 022837 199 SQT 201 (291)
Q Consensus 199 ~~~ 201 (291)
...
T Consensus 91 ~~~ 93 (104)
T 1we8_A 91 RKR 93 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 37
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=110.60 Aligned_cols=70 Identities=27% Similarity=0.396 Sum_probs=63.6
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|++++|++|+++|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999999998633 368999999999999999999998765
No 38
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=6e-15 Score=112.11 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=64.3
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
.+++|.||.+++++||||+|++||+|+++|||+|+|.+++ ....+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999998643 2456899999999999999999999999874
No 39
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.56 E-value=8.6e-15 Score=109.09 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=66.9
Q ss_pred CCCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 31 ~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
....++++|+||.+++|+||||+|++||+|+++|||+|+|.++.... ...+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45779999999999999999999999999999999999998754322 34789999999999999999999977654
No 40
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.54 E-value=2.3e-14 Score=108.81 Aligned_cols=77 Identities=31% Similarity=0.490 Sum_probs=66.7
Q ss_pred CCCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 31 ~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
...+++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+.. ...++.|+|+|+.+++.+|+.+|.+++.++
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 34568899999999999999999999999999999999998754311 235899999999999999999999887655
No 41
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=107.61 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=62.9
Q ss_pred CCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 32 ~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
...++++|.||.+++|+||||+|++||+|+++|||+|+|++.+ ++++++|+|+++++++|+.+|.+.+..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999998633 368999999999999999999986543
No 42
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=109.75 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=63.4
Q ss_pred EEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 35 ~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
-+++|+||.+++|+||||+|++||+|+++|+|+|+|.++. +...+|.|+|+|+++++.+|+++|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3689999999999999999999999999999999998654 3567899999999999999999999777654
No 43
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=3e-14 Score=106.61 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=66.4
Q ss_pred CCCCCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHh
Q 022837 29 DPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106 (291)
Q Consensus 29 ~~~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~ 106 (291)
|.....++++|.||.+++|.||||+|.+|++|+++|||+|+|+++.+ ++..+|.|+|+|+.+++.+|+.+|.+.+.
T Consensus 11 d~~~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 11 DRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp HHHHTTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhhccceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999987653 44468999999999999999999986553
No 44
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=2.7e-14 Score=106.38 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=64.9
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
...++.+|.||.+++|.|||++|++||+|+++|||+|+|++.+ ..++.|+|+|+++++++|+.+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568999999999999999999999999999999999998632 24579999999999999999999999874
No 45
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.49 E-value=2.7e-14 Score=100.74 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=60.6
Q ss_pred ceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 022837 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKL 192 (291)
Q Consensus 121 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l 192 (291)
..+..|.||.+++|.|||++|++|++|+++|||+|+|+++. ..++.|+|+|+.+++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999998732 25689999999999999999998864
No 46
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=4.7e-14 Score=105.59 Aligned_cols=72 Identities=25% Similarity=0.258 Sum_probs=64.8
Q ss_pred ceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 121 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
..+..|.||.++++.|||++|++|++|+++|||+|+|++... ++..++.|+|+|+.+++++|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999987432 334678999999999999999999999876
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.47 E-value=8.9e-15 Score=117.51 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=81.0
Q ss_pred ceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccCC
Q 022837 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200 (291)
Q Consensus 121 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~~ 200 (291)
.++.+++||.+.+|.+||++|++|++|++++|++|....+ ..+..+...++++.|.+|+.++ .-
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~------~~~~~i~~~~~p~~v~~~~~~l----~~------ 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE------DTCTFHIYGEDQDAVKKARSFL----EF------ 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET------TTTEEEEEESSHHHHHHHHHHH----CE------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC------CchheeeccCCHHHHHHHHHhh----hc------
Confidence 4688999999999999999999999999999944333321 1344555556799999887643 10
Q ss_pred CCCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcceeEEeecCccceehccc
Q 022837 201 TMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVGMLLIILIAQPIICHFSL 280 (291)
Q Consensus 201 ~~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~~ 280 (291)
...++.||++.+|.+||| ||.+|+.+++
T Consensus 67 --------------------------------------------------~e~~v~Vp~~~~g~~IGK--~G~nIr~i~~ 94 (144)
T 2qnd_A 67 --------------------------------------------------AEDVIQVPRNLVGKVIGK--NGKLIQEIVD 94 (144)
T ss_dssp --------------------------------------------------EEEEEEEEGGGHHHHHCG--GGHHHHHHHH
T ss_pred --------------------------------------------------ceEEEEECHHHcCeeECC--CCHHHHHHHH
Confidence 016789999999999999 9999999999
Q ss_pred cccc-eEEeec
Q 022837 281 SIYE-EIRLNE 290 (291)
Q Consensus 281 ~tga-~i~~~~ 290 (291)
.||+ +|+|..
T Consensus 95 ~tG~~~I~i~~ 105 (144)
T 2qnd_A 95 KSGVVRVRIEA 105 (144)
T ss_dssp HHTCSEEEEEE
T ss_pred HHCCEEEEEcC
Confidence 9997 999874
No 48
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.47 E-value=6.4e-15 Score=125.93 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=88.7
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcC-----HHHHHHHHHHHHHHHhc
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT-----LDEQMRALELILLKLSE 194 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~-----~~~v~~A~~~I~~~l~e 194 (291)
.+...++.||.+.+|.|||++|++|+.|+++|||+|++.. .++.|+|+|+ ++++++|+.+|..+.+.
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--------ETGEVWITSTKETEDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3457799999999999999999999999999999999975 3567999886 69999999999998854
Q ss_pred Cccc-CCCCCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEee-----c------CCCc
Q 022837 195 DTLY-SQTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPW-----P------LNPV 262 (291)
Q Consensus 195 ~~~~-~~~~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i-----P------~~~v 262 (291)
.+.. ...+.. ... .-..+.+ + ...+
T Consensus 104 ~~~e~g~~ll~----dd~---------------------------------------~~e~i~i~~~~v~~~~~~~~r~~ 140 (219)
T 2e3u_A 104 FSPERAFRLLN----EGE---------------------------------------YLEIINLTDIIIGNEKNALPRVR 140 (219)
T ss_dssp CCHHHHGGGGS----TTC---------------------------------------EEEEEEGGGCC------CHHHHH
T ss_pred CCccccceecc----CCc---------------------------------------cceeEEcccccccCCchhhhhhh
Confidence 2111 000000 000 0011111 2 2369
Q ss_pred ceeEEeecCccceehccccccceEEeec
Q 022837 263 GMLLIILIAQPIICHFSLSIYEEIRLNE 290 (291)
Q Consensus 263 G~iIG~~~gg~~ik~~~~~tga~i~~~~ 290 (291)
|.|||| ||.+||.|++.|||+|+|.+
T Consensus 141 GriIGk--~G~tik~ie~~Tg~~I~v~~ 166 (219)
T 2e3u_A 141 GRIIGR--KGRTRQIIEEMSGASVSVYG 166 (219)
T ss_dssp HHHHCG--GGHHHHHHHHHHCCEEEEET
T ss_pred heeECC--CchHHHHHHHHhCceEEECC
Confidence 999999 99999999999999999976
No 49
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=7.6e-14 Score=104.00 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=65.3
Q ss_pred CCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 118 VGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 118 ~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
....++..|.||.++++.|||++|++||+|+++|||+|+|+++. ...++.|+|+|++++|++|+++|..++.+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG----APDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT----CSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC----CCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999997632 12468999999999999999999999876
No 50
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.45 E-value=1.2e-13 Score=97.37 Aligned_cols=67 Identities=18% Similarity=0.373 Sum_probs=60.7
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHH
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDK 104 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~ 104 (291)
...+..|.||.+++|.|||++|.+|++|+++|||+|+|++++ ..+|.|+|+|+.+++.+|+++|.+.
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999998754 3678999999999999999999753
No 51
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=3.7e-15 Score=112.51 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=73.9
Q ss_pred EecCHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHh-ccceEEEecCCCCCC
Q 022837 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDD-SQAVIKISRLDHSYY 165 (291)
Q Consensus 87 I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~-tGa~I~i~~~~~~~~ 165 (291)
|+|++++|.+|+.+|.+.+ ...++.+|.||..+++.|||++|++||+|+++ ++++|+|++
T Consensus 5 i~G~~~~V~~A~~~i~~~~-------------~~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------ 65 (102)
T 2ctf_A 5 SSGEPEKLGQALTEVYAKA-------------NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------ 65 (102)
T ss_dssp CCCCCCCCCCSCCCCCCCC-------------CCCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------
T ss_pred cCcCHHHHHHHHHHHHHHh-------------cCeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------
Confidence 5677777777777765332 12278999999999999999999999999997 589999986
Q ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 166 GLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 166 ~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
.++.|+|+|+++.|.+|+.+|..++.+.
T Consensus 66 --~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 --GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp --SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999773
No 52
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.6e-13 Score=102.08 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=63.8
Q ss_pred CCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 32 ~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
+..++.+|.||.+.+|.|||++|.+||+|+++|||+|+|++.. ..++.|+|+|+++++.+|+.+|.+.+.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568999999999999999999999999999999999998643 24578999999999999999999766554
No 53
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=2.2e-13 Score=101.44 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=64.0
Q ss_pred CCCcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 31 ~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
.+..++..|.||.+++|.|||++|.+|++|+++|||+|+|+++.+ ..+|.|+|+|.+++|.+|+++|.+.+.+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~----~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC----CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999987542 3468999999999999999999865543
No 54
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.40 E-value=4.4e-13 Score=122.43 Aligned_cols=155 Identities=8% Similarity=0.079 Sum_probs=103.6
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (291)
++.+.+.+|...++. ...+..|.+ ++.++++|.|+...+. .+.....|+|+|...++.+|++.+...+......
T Consensus 105 Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~-~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~-- 178 (376)
T 3n89_A 105 HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK-NGIVTTYLRITAREKNQHELIEAAKRLNEILFRE-- 178 (376)
T ss_dssp EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC------CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC---
T ss_pred CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc-cCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhh--
Confidence 345677777654443 122334544 5678999999654321 1112567999999987777666655433332111
Q ss_pred ccCCCCCceEEEEEecCCccceeeccCC--hhHHHHHHhccceEEEecCCCCC-CCCCceEEEEEcCHHHHHHHHHHHHH
Q 022837 114 QADDVGTKTKLRLIVPNSSCGSIIGKAG--ATIKSFMDDSQAVIKISRLDHSY-YGLNDRLVTLTGTLDEQMRALELILL 190 (291)
Q Consensus 114 ~~~~~~~~~~~~i~VP~~~vg~IIGk~G--~~Ik~I~~~tGa~I~i~~~~~~~-~~~~er~V~I~G~~~~v~~A~~~I~~ 190 (291)
.......+++.+.|+..++..||||+| ..|++|+++|||+|+|++.++.. .......|+|+|+.++|.+|+.+|.+
T Consensus 179 -e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~ 257 (376)
T 3n89_A 179 -SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMD 257 (376)
T ss_dssp --CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHH
T ss_pred -hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHh
Confidence 112234589999999999999999999 56799999999999998643211 11245689999999999999999999
Q ss_pred HHhcC
Q 022837 191 KLSED 195 (291)
Q Consensus 191 ~l~e~ 195 (291)
+|--.
T Consensus 258 lLPv~ 262 (376)
T 3n89_A 258 LLPIS 262 (376)
T ss_dssp TSEEE
T ss_pred hCCEE
Confidence 88543
No 55
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=2.4e-13 Score=102.94 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=63.6
Q ss_pred CceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 120 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
.+.+..|.||.+++|.|||++|++||+|+++|||+|+|+++. ...+.|+|+|+.+++++|+.+|.+++.+.
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-----TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 357899999999999999999999999999999999998732 23569999999999999999999998764
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.7e-12 Score=98.32 Aligned_cols=69 Identities=25% Similarity=0.320 Sum_probs=61.5
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
++...|.||.+++|.|||++|.+|++|+++|||+|+|+++++ ..+.|+|+|+.+++.+|+.+|.+.+.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-----~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-----TCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-----CcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 488999999999999999999999999999999999987542 456899999999999999999866543
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=1.6e-12 Score=96.61 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=64.9
Q ss_pred CCCceEEEEEecCCccceeeccCChhHHHHHHhc-cceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 118 VGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS-QAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 118 ~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
..+.++..|.||.++++.|||++|++||+|+++| ||+|+|+++ +...+.|+|+|+.++|++|+.+|.+++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-----GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-----TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3556899999999999999999999999999999 999999863 23567999999999999999999999976
No 58
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=1.6e-11 Score=91.20 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=64.3
Q ss_pred CCCCcEEEEEEecccccceeeccCChhHHHHHHHh-CCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhh
Q 022837 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (291)
Q Consensus 30 ~~~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~ 107 (291)
..++.++..|.||.++++.|||++|.+|++|+++| ||+|+|++++ ...+.|+|.|..+++.+|+++|.+.+.+
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-----SGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-----TTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 45677889999999999999999999999999999 9999998743 4567899999999999999999865543
No 59
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.22 E-value=1.5e-12 Score=108.70 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=90.0
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHhcCcc
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT-----GTLDEQMRALELILLKLSEDTL 197 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~-----G~~~~v~~A~~~I~~~l~e~~~ 197 (291)
..++.||.+.+|.|||++|++++.|++.+|++|++.. .++.|+|+ |++.++.+|..+|..+.+.-+.
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999999999999975 46788998 9999999999999998876432
Q ss_pred cCCC-CCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEee----------cCCCcceeE
Q 022837 198 YSQT-MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPW----------PLNPVGMLL 266 (291)
Q Consensus 198 ~~~~-~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i----------P~~~vG~iI 266 (291)
.+.. +.. ..+ .--.+.+ +...+|.||
T Consensus 77 e~A~~Ll~----Dd~---------------------------------------~~e~i~i~~~~~~~~~~~~r~~GrII 113 (191)
T 1tua_A 77 EKAFRLLE----EDQ---------------------------------------ILVVVDLKQVVGDSQNHLKRIKGRII 113 (191)
T ss_dssp HHHGGGGS----TTE---------------------------------------EEEEEETHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhccc----Ccc---------------------------------------eeEEEEcccccccCchhHHHHhhhee
Confidence 1110 000 000 0011222 234689999
Q ss_pred EeecCccceehccccccceEEeec
Q 022837 267 IILIAQPIICHFSLSIYEEIRLNE 290 (291)
Q Consensus 267 G~~~gg~~ik~~~~~tga~i~~~~ 290 (291)
|| +|.+|+.|.+-|||+|.|.+
T Consensus 114 Gk--~G~tik~iE~~Tg~~I~v~~ 135 (191)
T 1tua_A 114 GE--GGRARRTIEEMTDTYINVGE 135 (191)
T ss_dssp CG--GGHHHHHHHHHHTCEEEECS
T ss_pred CC--CccHHHHHHHHHCceEEEcC
Confidence 99 99999999999999999976
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=1.1e-10 Score=87.97 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=58.3
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHh-CCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHh
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~ 106 (291)
.++.+|.||..+++.|||++|++|++|++++ +++|+|++ .++.|+|+|.++.|.+|+.+|.+.+.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------GEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------SSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------CCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999985 89999975 25789999999999999999975553
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=1.4e-10 Score=84.76 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCceEEEEEecCCccceeeccCChhHHHHHHhccce-EEEecCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHH
Q 022837 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV-IKISRLDHSYYGLNDRLVTLTG-TLDEQMRALELILLK 191 (291)
Q Consensus 119 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~-I~i~~~~~~~~~~~er~V~I~G-~~~~v~~A~~~I~~~ 191 (291)
...+...|.||.+++|.|||++|++||+|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|..+
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 345789999999999999999999999999999998 99974 358999999 799999999998763
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=5.1e-09 Score=82.16 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=61.9
Q ss_pred CceEEEEEecCC------ccceeeccCChhHHHHHHhccceEEEecCCCCC-------------CCCCceEEEEEcC-HH
Q 022837 120 TKTKLRLIVPNS------SCGSIIGKAGATIKSFMDDSQAVIKISRLDHSY-------------YGLNDRLVTLTGT-LD 179 (291)
Q Consensus 120 ~~~~~~i~VP~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~-------------~~~~er~V~I~G~-~~ 179 (291)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|....... ....+-.|.|+++ .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 357899999988 889999999999999999999999997632100 1123668999995 88
Q ss_pred HHHHHHHHHHHHHhc
Q 022837 180 EQMRALELILLKLSE 194 (291)
Q Consensus 180 ~v~~A~~~I~~~l~e 194 (291)
.+.+|+++|.++|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 63
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=1.2e-09 Score=79.77 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=56.0
Q ss_pred CCcEEEEEEecccccceeeccCChhHHHHHHHhCCc-EEEcCCCCCCCCCCceEEEEec-CHHHHHHHHHHHH
Q 022837 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGAR-IQLSRSHEFFPGTTDRIIMISG-TIDEILRAVDLVI 102 (291)
Q Consensus 32 ~~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~-I~v~~~~~~~p~~~er~v~I~G-~~~~v~~A~~~I~ 102 (291)
...+...|.||.+++|.|||++|.+|++|+++||++ |.+.+ ++..|+|.| +.+.+.+|+.+|.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~ 76 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLE 76 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHS
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHH
Confidence 345889999999999999999999999999999998 99963 247799999 7899999988885
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=2.2e-08 Score=77.08 Aligned_cols=78 Identities=22% Similarity=0.181 Sum_probs=57.5
Q ss_pred CCCCcEEEEEEeccc-------ccceeeccCChhHHHHHHHhCCcEEEcCCCCCC--C-----CCCceEEEEe-cCHHHH
Q 022837 30 PTEKPTYIRFLVSNP-------LAGAVIGKGGSTINDFQSQSGARIQLSRSHEFF--P-----GTTDRIIMIS-GTIDEI 94 (291)
Q Consensus 30 ~~~~~~~~rilvp~~-------~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~--p-----~~~er~v~I~-G~~~~v 94 (291)
..-..+..||.||.+ .+|.|||++|.+||+|+++|||+|.|....... + ..++-.|.|. .+.+.+
T Consensus 7 ~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i 86 (119)
T 2yqr_A 7 GGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGL 86 (119)
T ss_dssp SCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHH
T ss_pred CCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHH
Confidence 344568889999876 689999999999999999999999997431100 0 0122345555 568999
Q ss_pred HHHHHHHHHHHhh
Q 022837 95 LRAVDLVIDKLLT 107 (291)
Q Consensus 95 ~~A~~~I~~~i~~ 107 (291)
.+|+++|.+.+..
T Consensus 87 ~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 87 AAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876643
No 65
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.1e-08 Score=78.71 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=58.3
Q ss_pred ceEEEEEecCC-------ccceeeccCChhHHHHHHhccceEEEecCCCC-------CCCCCceEEEEEcC-HHHHHHHH
Q 022837 121 KTKLRLIVPNS-------SCGSIIGKAGATIKSFMDDSQAVIKISRLDHS-------YYGLNDRLVTLTGT-LDEQMRAL 185 (291)
Q Consensus 121 ~~~~~i~VP~~-------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~-------~~~~~er~V~I~G~-~~~v~~A~ 185 (291)
..+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+... ....++-.|.|++. .+++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46788888865 78999999999999999999999999743110 01123457888865 99999999
Q ss_pred HHHHHHHhc
Q 022837 186 ELILLKLSE 194 (291)
Q Consensus 186 ~~I~~~l~e 194 (291)
.+|.++|.+
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999876
No 66
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=1.1e-08 Score=80.15 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=59.5
Q ss_pred CcEEEEEEeccc------ccceeeccCChhHHHHHHHhCCcEEEcCCCCCC-------------CCCCceEEEEec-CHH
Q 022837 33 KPTYIRFLVSNP------LAGAVIGKGGSTINDFQSQSGARIQLSRSHEFF-------------PGTTDRIIMISG-TID 92 (291)
Q Consensus 33 ~~~~~rilvp~~------~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~-------------p~~~er~v~I~G-~~~ 92 (291)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|....... ....+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468899999988 889999999999999999999999997632100 011245677877 588
Q ss_pred HHHHHHHHHHHHHhh
Q 022837 93 EILRAVDLVIDKLLT 107 (291)
Q Consensus 93 ~v~~A~~~I~~~i~~ 107 (291)
.+.+|+++|.+.+..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877754
No 67
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.49 E-value=1.4e-07 Score=92.11 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEE
Q 022837 95 LRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTL 174 (291)
Q Consensus 95 ~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I 174 (291)
.+++..|++.+.+.+...........+....+.||.++++.|||+||++||+|+++|||+|.|.. +..|.|
T Consensus 540 ~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I 610 (630)
T 3u1k_A 540 SVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSV 610 (630)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEE
Confidence 33445555555555443322223344578889999999999999999999999999999999973 468999
Q ss_pred EcC-HHHHHHHHHHHHHHH
Q 022837 175 TGT-LDEQMRALELILLKL 192 (291)
Q Consensus 175 ~G~-~~~v~~A~~~I~~~l 192 (291)
.|+ .+.+++|+++|..++
T Consensus 611 ~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 611 FAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EESSHHHHHHHHHHTTC--
T ss_pred EeCCHHHHHHHHHHHHHHh
Confidence 997 688999999987664
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.46 E-value=2.4e-07 Score=73.13 Aligned_cols=74 Identities=23% Similarity=0.169 Sum_probs=56.3
Q ss_pred eEEEEEecCC------ccceeeccCChhHHHHHHhccceEEEecCCCCC---------------CCCCceEEEEEcC-H-
Q 022837 122 TKLRLIVPNS------SCGSIIGKAGATIKSFMDDSQAVIKISRLDHSY---------------YGLNDRLVTLTGT-L- 178 (291)
Q Consensus 122 ~~~~i~VP~~------~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~---------------~~~~er~V~I~G~-~- 178 (291)
.+.++.||.+ ++|+|||++|.++|+|+++|||+|.|..+.... ...++-.|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4667888854 489999999999999999999999998632110 0112337889985 3
Q ss_pred ----HHHHHHHHHHHHHHhcC
Q 022837 179 ----DEQMRALELILLKLSED 195 (291)
Q Consensus 179 ----~~v~~A~~~I~~~l~e~ 195 (291)
..+.+|+++|.++|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 37999999999999753
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.45 E-value=2.1e-07 Score=73.36 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=54.0
Q ss_pred EEEEEEecccc------cceeeccCChhHHHHHHHhCCcEEEcCCCCCCC---------------CCCceEEEEecC-H-
Q 022837 35 TYIRFLVSNPL------AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFP---------------GTTDRIIMISGT-I- 91 (291)
Q Consensus 35 ~~~rilvp~~~------vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p---------------~~~er~v~I~G~-~- 91 (291)
+.-||.||.+. +|+|||++|.++|+|+++|||+|.|........ ...+--|.|++. +
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56789999766 999999999999999999999999986442110 012236778774 3
Q ss_pred ----HHHHHHHHHHHHHHh
Q 022837 92 ----DEILRAVDLVIDKLL 106 (291)
Q Consensus 92 ----~~v~~A~~~I~~~i~ 106 (291)
..+.+|+++|.+.|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 268899999987664
No 70
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=98.17 E-value=6.9e-07 Score=70.87 Aligned_cols=105 Identities=21% Similarity=0.275 Sum_probs=75.8
Q ss_pred EEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhccccc
Q 022837 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQ 114 (291)
Q Consensus 35 ~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~ 114 (291)
-.+.|+|+...+|+.||++|++|+.|+++.|-+|.+-..++ + -..+|...|.-..-..-.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~------d--------------~~~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS------D--------------LERIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS------S--------------HHHHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC------C--------------HHHHHHHhcCCceEEEEE
Confidence 35789999999999999999999999999999999976432 1 122333222111000000
Q ss_pred cCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEec
Q 022837 115 ADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159 (291)
Q Consensus 115 ~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~ 159 (291)
...........+.||.+..+..|||+|.+++-..+-||.+|.|..
T Consensus 96 i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 96 VRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred EeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 000023467889999999999999999999999999999888753
No 71
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.06 E-value=2.1e-06 Score=84.73 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEE
Q 022837 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175 (291)
Q Consensus 96 ~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~ 175 (291)
+++..|++.+.+.+...........+....+.||.++++.|||+||.+||+|.++|||+|.|.. +..|.|.
T Consensus 544 ~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d---------dG~v~I~ 614 (726)
T 4aid_A 544 EGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND---------DGVVKVS 614 (726)
T ss_dssp HHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------CceEEEE
Confidence 3444555555555433222222334557788999999999999999999999999999999863 3567887
Q ss_pred cC-HHHHHHHHHHHHHHHhc
Q 022837 176 GT-LDEQMRALELILLKLSE 194 (291)
Q Consensus 176 G~-~~~v~~A~~~I~~~l~e 194 (291)
+. .+++++|+.+|..++.+
T Consensus 615 ~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 615 ASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp CSCHHHHHHHHHC-------
T ss_pred eCCHHHHHHHHHHHHHHhhh
Confidence 77 88899999999988764
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.00 E-value=1.6e-05 Score=61.57 Aligned_cols=66 Identities=20% Similarity=0.121 Sum_probs=57.6
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHH
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i 105 (291)
++.|.|....++.|+|++|+.|+.|+..|++.|+|..-+ .+.+-.|+|.|++..-.+|+.+|....
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~----s~g~tEVtIfG~~~~Q~rak~MI~sLA 122 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG----PERRAEIWIFGPPPFRRDVDRMLTDLA 122 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC----TTSCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC----CCCcEEEEEECCHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999998643 235677999999999999999997544
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.89 E-value=2.5e-05 Score=60.44 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=60.0
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
...+.+.+..++.|+|++|+.|+.|+..|++.|++..-+. +..-.|+|.|++..-.+|+.+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s----~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP----ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT----TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC----CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999987422 2567899999999999999999987653
No 74
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=78.31 Aligned_cols=62 Identities=16% Similarity=0.301 Sum_probs=52.8
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecC-HHHHHHHHHHHHH
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT-IDEILRAVDLVID 103 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~-~~~v~~A~~~I~~ 103 (291)
-+....|.||.+.+|.|||++|.+||.|+++|||+|.|.+ +-.|.|.+. .+.+.+|+++|.+
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I~~~~~~~~~~A~~~I~~ 627 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSVFAPTPSAMHEARDFITE 627 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEEEESSHHHHHHHHHHTTC
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEEEeCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999964 245788776 6788999888854
No 75
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.08 E-value=0.00034 Score=60.13 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=68.1
Q ss_pred cccceeeccCChhHHHH-HHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhccccccCCCCCce
Q 022837 44 PLAGAVIGKGGSTINDF-QSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122 (291)
Q Consensus 44 ~~vG~IIGk~G~~Ik~I-~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~ 122 (291)
+-+|+.||++|.+|+.| ++..|-+|.|-..++ + ...+|...|.-..-.. .........
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------------p~~fi~nalsPA~V~~-V~i~~~~~~ 184 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------------PARFVANALSPAKVVS-VSVIDQTAR 184 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------------HHHHHHHHTTTSCCSE-EEEEETTTT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC------C--------------HHHHHHhccCCcceEE-EEEEcCCCc
Confidence 45899999999999999 677789999976432 2 1223332222110000 000011225
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHhccceEEEecCC
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~ 161 (291)
...+.||.+..+.-|||+|.|++--..-||.+|.|....
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 788999999999999999999999999999999998744
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.98 E-value=0.00024 Score=70.17 Aligned_cols=63 Identities=21% Similarity=0.393 Sum_probs=11.0
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecC-HHHHHHHHHHHHHHH
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT-IDEILRAVDLVIDKL 105 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~-~~~v~~A~~~I~~~i 105 (291)
+....|.||.++++.|||++|.+||+|+++||++|.+.++ -.|.|.+. .+.+.+|+++|...+
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd---------G~v~I~~~~~~~~~~A~~~i~~i~ 632 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD---------GVVKVSASDGAKIKAAIDWIKSIT 632 (726)
T ss_dssp CC----------------------------------------------------CCSCHHHHHHHHHC-----
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC---------ceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999642 33566654 778888888887443
No 77
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.96 E-value=0.00029 Score=69.81 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEc
Q 022837 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176 (291)
Q Consensus 97 A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G 176 (291)
+...|++.+.+.+...........+....+.||.++++.+||++|.+|+.|.++||+.|.+.. +..|.|.+
T Consensus 535 ~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~~ 605 (723)
T 3cdi_A 535 ARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIAA 605 (723)
T ss_dssp HHHHHHHHHHHHCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEec
Confidence 444455555555433212222234567788899999999999999999999999999998763 35677766
Q ss_pred C-HHHHHHHHHHHHHHHhc
Q 022837 177 T-LDEQMRALELILLKLSE 194 (291)
Q Consensus 177 ~-~~~v~~A~~~I~~~l~e 194 (291)
. .+.+++|.++|..++.+
T Consensus 606 ~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 606 TDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHHHHHHHhhh
Confidence 5 66778888888776543
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.85 E-value=0.0006 Score=61.83 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=73.1
Q ss_pred EEEEecc-----cccceeeccCChhHHHHHHHh-CCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhc
Q 022837 37 IRFLVSN-----PLAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELH 110 (291)
Q Consensus 37 ~rilvp~-----~~vG~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~ 110 (291)
.++-|-+ +-+|..||++|.+|+.|.++. |-+|.|-..++ + ...+|...|.-..-
T Consensus 237 aKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------------p~~fi~nalsPA~V 296 (366)
T 1k0r_A 237 SKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------------PARFVANALSPAKV 296 (366)
T ss_dssp EEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------------HHHHHHHHTTTSCC
T ss_pred EEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcCC------C--------------HHHHHHHhcCCcce
Confidence 4555544 568999999999999999999 89999876432 1 12233322221100
Q ss_pred cccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCC
Q 022837 111 AEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~ 161 (291)
..-...+ .......+.||....+..|||+|.|++-...-||.+|.|....
T Consensus 297 ~~V~~~~-~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 297 VSVSVID-QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp SEEEEEE-TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred eEEEEEc-CCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 0000011 1245789999999999999999999999999999999998743
No 79
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.73 E-value=0.00016 Score=71.93 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEE
Q 022837 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175 (291)
Q Consensus 96 ~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~ 175 (291)
+++..|++.+.+.+... .......+....+.||.++++.+||++|.+||+|.+++|+.|.|.. +..|.|+
T Consensus 573 ~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is 642 (757)
T 1e3p_A 573 DARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIG 642 (757)
T ss_dssp HHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-----------------CCC
T ss_pred HHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEe
Confidence 34445565665554433 2222233455678899999999999999999999999999998863 3567776
Q ss_pred cC-HHHHHHHHHHHHHHH
Q 022837 176 GT-LDEQMRALELILLKL 192 (291)
Q Consensus 176 G~-~~~v~~A~~~I~~~l 192 (291)
.. ....++|+.+|..+.
T Consensus 643 ~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 643 AADGPAAEAARATINGIA 660 (757)
T ss_dssp BSSHHHHCC---------
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 65 667777877776654
No 80
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.02 E-value=0.0008 Score=53.19 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=73.9
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCcccCCC
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~~~~~~~ 201 (291)
....++|+...+|..||++|++|+.|+++.|-+|.+-.-++ + -..+|...|.-..-. .
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~------d--------------~~~fI~naLsPA~V~--~ 93 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS------D--------------LERIVKNLFPGVKIE--S 93 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS------S--------------HHHHHHHHSTTSCEE--E
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC------C--------------HHHHHHHhcCCceEE--E
Confidence 58899999999999999999999999999999999986321 1 123333333211100 0
Q ss_pred CCCCccCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeecCCCcceeEEeecCccceehcccc
Q 022837 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKVLLPWPLNPVGMLLIILIAQPIICHFSLS 281 (291)
Q Consensus 202 ~~~~~~~~g~~~~~~~g~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iP~~~vG~iIG~~~gg~~ik~~~~~ 281 (291)
.. .. .........+.||++..+..||| +|.|++-.++=
T Consensus 94 V~--i~--------------------------------------~~~~~~~~~V~V~~~q~slAIGk--~G~NvrLa~~L 131 (144)
T 2cxc_A 94 IN--VR--------------------------------------ERNGVKQVVIKVSEDDKGAAIGK--GGKNVKRARLV 131 (144)
T ss_dssp EE--EE--------------------------------------EETTEEEEEEEECTTTHHHHHCG--GGHHHHHHHHH
T ss_pred EE--Ee--------------------------------------ecCCcEEEEEEEChHHhhhccCC--CCHHHHHHHHH
Confidence 00 00 00011347889999999999999 99999999998
Q ss_pred ccceEEee
Q 022837 282 IYEEIRLN 289 (291)
Q Consensus 282 tga~i~~~ 289 (291)
||..|.|.
T Consensus 132 tg~~idI~ 139 (144)
T 2cxc_A 132 LSKLFGVE 139 (144)
T ss_dssp HHHHHCEE
T ss_pred hCCeeCce
Confidence 88877654
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.97 E-value=0.0047 Score=55.73 Aligned_cols=96 Identities=23% Similarity=0.304 Sum_probs=67.2
Q ss_pred cccceeeccCChhHHHHHHHh-CCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhccccccCCCCCce
Q 022837 44 PLAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122 (291)
Q Consensus 44 ~~vG~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~ 122 (291)
+-+|+.||.+|.+|+.+.++. |-+|.+-..++ + -..+|...|.-..-.. -........
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~------d--------------~~~fi~nal~Pa~v~~-v~~~d~~~~ 303 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSD------D--------------PKQLIANALAPATVIE-VEILDKENK 303 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS------S--------------HHHHHHHHTCSSCCSE-EEEEETTTT
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCC------C--------------HHHHHHHhcCccEEEE-EEEEcCCCC
Confidence 358999999999999999998 78888865332 1 1123332221110000 000012235
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHhccceEEEecC
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRL 160 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~ 160 (291)
...+.||.++.+.-|||+|.|++--..-||.+|.|...
T Consensus 304 ~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 78999999999999999999999999999999999763
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.70 E-value=0.012 Score=58.35 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=0.0
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecC-HHHHHHHHHHHH
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT-IDEILRAVDLVI 102 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~-~~~v~~A~~~I~ 102 (291)
+....+.||.+.++.|||++|.+|+.|.++||+.|.+.. +..+.|.+. .+.+.+|.++|.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~~~~~~~~~~a~~~i~ 619 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIAATDGEKAKHAIRRIE 619 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEecCCHHHHHHHHHHHH
Confidence 455778899999999999999999999999999999853 344666554 455666766654
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.51 E-value=0.045 Score=54.45 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=12.8
Q ss_pred EEEeecCCCcceeEEeecCccceehccccccceEEeec
Q 022837 253 VLLPWPLNPVGMLLIILIAQPIICHFSLSIYEEIRLNE 290 (291)
Q Consensus 253 ~~i~iP~~~vG~iIG~~~gg~~ik~~~~~tga~i~~~~ 290 (291)
.++.||.+++|.+||. ||.+||+|.+++|+.|.|.+
T Consensus 600 ~~~~I~~~ki~~vIG~--gGk~Ik~I~~~~G~~IdI~~ 635 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGP--KRQMINQIQEDTGAEITIED 635 (757)
T ss_dssp CCC--------------------CTTCCCCCSCC----
T ss_pred EEEEEChHHeehcccc--cceeeehhhHhhCCEEEecC
Confidence 5678999999999999 99999999999999998864
No 84
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=89.88 E-value=0.23 Score=42.56 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=37.4
Q ss_pred EEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCC
Q 022837 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHE 75 (291)
Q Consensus 35 ~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~ 75 (291)
-.+.+.||.++.++.|||+|.|++.-.+-||.+|.|....+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 46889999999999999999999999999999999976543
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=87.07 E-value=0.37 Score=43.36 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=36.9
Q ss_pred CcEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCC
Q 022837 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73 (291)
Q Consensus 33 ~~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~ 73 (291)
+.-.+.+.||.++.++.|||+|.|++.-.+-||.+|.|...
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 34578899999999999999999999999999999999653
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=86.43 E-value=0.39 Score=43.45 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=37.6
Q ss_pred cEEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCC
Q 022837 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74 (291)
Q Consensus 34 ~~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~ 74 (291)
.-.+.+.||.++.++.|||+|.|++-..+-||.+|.|....
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 45789999999999999999999999999999999997654
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=85.52 E-value=0.37 Score=38.12 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=46.5
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhh
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~ 109 (291)
++.+.+..+..|.+|||.|.|++.||--+...++-.. ...-.+-+.+-.+.-.+.+..+...+.+..
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~-------~~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY-------GYSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH-------SCEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC-------CceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566677889999999999999999998743333211 112335566767777777777777776653
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=80.00 E-value=0.67 Score=36.65 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=44.7
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
.++.+.+-.+..|.||||.|.+++.||--+... +.+.. . -.-.+-+.|-.+.-+..+..+...+.+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~--vn~~~----~-~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLFNW--IHPTY----G-YSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH--HHHHH----S-CEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHHHH--hhhcC----C-ceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 357777888999999999999999999776332 22211 0 1123455566677777777776666654
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=78.01 E-value=0.81 Score=32.93 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=23.2
Q ss_pred EEEEEecccccceeeccCChhHHHHHHH
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~ 63 (291)
.+++.|....-|.|||++|..|++|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 3677788888899999999999887664
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=74.82 E-value=0.93 Score=32.62 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=24.6
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHh
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
..+++.|....-|.|||++|..|++|+.+
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 46788889999999999999999887654
No 91
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=70.49 E-value=1.5 Score=36.90 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=43.7
Q ss_pred EEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhh
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~ 108 (291)
+.+.+..+..|.+|||.|.+++.||.-+..-++-... .-..-.+-|.|-.+.-.+.+..+...+.+.
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~-----~~~rv~LDi~~YR~rR~e~L~~lA~~~A~k 160 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS-----DYIRVKLDTENYRERRKETLETLAKNIAYK 160 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS-----SCCEEEEESTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC-----CceEEEEecchHHHHHHHHHHHHHHHHHHH
Confidence 4555667789999999999999999998755544211 111233555676666666666655555444
No 92
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=66.46 E-value=3.1 Score=34.94 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=41.1
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
++.+.+..+..|.||||.|.+++.||.-+...++-... .-..-.+-|-|-.+.-+..+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~-----~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS-----DYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS-----SCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC-----CceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 56666777889999999999999999887643332110 00112344556555555555555544433
No 93
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=64.69 E-value=11 Score=31.57 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=43.3
Q ss_pred EEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHH
Q 022837 38 RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVI 102 (291)
Q Consensus 38 rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~ 102 (291)
-+.++...+.+++|+++..++.|.+.+++.|-+-.+ =.|.|.+.......+...|.
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN---------GLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT---------SEEEEESCHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC---------cEEEEeCCchhHHHHHHHHH
Confidence 346778888899999999999999999999999542 23678888765555555554
No 94
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=63.71 E-value=43 Score=24.92 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=57.6
Q ss_pred CceEEEEecCHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCCh-----------hHHHHHH
Q 022837 81 TDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGA-----------TIKSFMD 149 (291)
Q Consensus 81 ~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~-----------~Ik~I~~ 149 (291)
.+-++.|+|-|++|.+-+..-.+++..++.-. ++..+.=..+-+ .+|--.|. .|++-+.
T Consensus 41 n~l~i~itgvpeqvrkelakeaerl~~efni~---------v~y~imgsgsgv-m~i~f~gddlea~ekalkemirqark 110 (170)
T 4hhu_A 41 NRLVIVITGVPEQVRKELAKEAERLKAEFNIN---------VQYQIMGSGSGV-MVIVFEGDDLEALEKALKEMIRQARK 110 (170)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHHHHHHHHTCE---------EEEEEECTTCCE-EEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHHhcceE---------EEEEEEeCCceE-EEEEEecCcHHHHHHHHHHHHHHHHh
Confidence 35679999999999887766667777664321 233333222222 22333333 3444444
Q ss_pred hccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 022837 150 DSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (291)
Q Consensus 150 ~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e~ 195 (291)
-.|+--.-.. .++-.+.|+|-|++|.+-+..=.++|...
T Consensus 111 fagtvtytl~-------gn~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 111 FAGTVTYTLS-------GNRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp TTCEEEEEEC-------SSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred hcceEEEEEe-------CCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 4453322221 14557899999999998777767777653
No 95
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=59.97 E-value=6.6 Score=33.31 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.2
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHh
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
..+++.|....-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 46788889999999999999999988764
No 96
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=55.16 E-value=11 Score=32.81 Aligned_cols=37 Identities=24% Similarity=0.150 Sum_probs=27.4
Q ss_pred ceEEEEEecCC-ccceeeccCChhHHHHH--------HhccceEEE
Q 022837 121 KTKLRLIVPNS-SCGSIIGKAGATIKSFM--------DDSQAVIKI 157 (291)
Q Consensus 121 ~~~~~i~VP~~-~vg~IIGk~G~~Ik~I~--------~~tGa~I~i 157 (291)
.+...++|..+ +-+.||||+|+.||+|. +..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 46677788865 55899999999998875 345666555
No 97
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=54.52 E-value=5.6 Score=34.70 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.1
Q ss_pred cEEEEEEeccc-ccceeeccCChhHHHHHH--------HhCCcEEE
Q 022837 34 PTYIRFLVSNP-LAGAVIGKGGSTINDFQS--------QSGARIQL 70 (291)
Q Consensus 34 ~~~~rilvp~~-~vG~IIGk~G~~Ik~I~~--------~tga~I~v 70 (291)
.+...++|..+ +.+.||||+|+.||+|.. -.|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 36666777776 889999999999987654 45666665
No 98
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=52.46 E-value=42 Score=28.04 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=45.2
Q ss_pred EEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEec-CHHHHHHHHHHHHHHHhhh
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISG-TIDEILRAVDLVIDKLLTE 108 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G-~~~~v~~A~~~I~~~i~~~ 108 (291)
+-+.++...+.+++|+++..++.|.+++++.|-+-. +-.|.|.+ +......+...|. .+.++
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~---------NG~IWi~~~~~~~~~~~~~ai~-~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR---------NGRIHLECPNEDLEAIAVMAIK-IIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET---------TTEEEEECSCHHHHHHHHHHHH-HHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC---------CCEEEEecCCHHHHHHHHHHHH-HHHhh
Confidence 445788889999999999999999999999999954 23366765 5556665555554 34443
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=51.13 E-value=5.7 Score=33.62 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEEecccccceeeccCChhHHHHHHHh
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~t 64 (291)
+++.|....-|.|||++|..|++|++..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 6777778888999999999998877654
No 100
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.80 E-value=5.7 Score=32.97 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=22.3
Q ss_pred EEEEecccccceeeccCChhHHHHHHH
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~ 63 (291)
+++.|....-|.|||++|..|++|++.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 566777778899999999999887654
No 101
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=48.40 E-value=7.6 Score=32.95 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHh
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~t 64 (291)
.+++.|....-|.|||++|..|++|++..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 46777788889999999999999887754
No 102
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=47.11 E-value=6.2 Score=33.39 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHh
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
..+++.|....-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 35788888899999999999999888654
No 103
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.28 E-value=5.8 Score=33.30 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=24.3
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHh
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~t 64 (291)
.+++.|....-|.|||++|..|++|++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46778888889999999999998877653
No 104
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.83 E-value=6.3 Score=32.72 Aligned_cols=28 Identities=21% Similarity=0.454 Sum_probs=23.4
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHH
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMD 149 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~ 149 (291)
..+++.|....-|.|||++|+.|++|+.
T Consensus 40 ~~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 40 LGTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp SCCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3567788888889999999999988754
No 105
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=42.82 E-value=6.4 Score=33.04 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccccc--CCCCCceEEEEEecCCccceeeccCChhHHHHHHh
Q 022837 92 DEILRAVDLVIDKLLTELHAEDQA--DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 92 ~~v~~A~~~I~~~i~~~~~~~~~~--~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
+.+..| +|.+.|.+++....-. .-......+++.|....-|.|||++|+.|++|+..
T Consensus 14 dg~~~a--~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 14 DGVFYA--ELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp HHHHHH--HHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cCeehH--HHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 345555 3555565554332100 00112346788899999999999999999887653
No 106
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=42.33 E-value=5.8 Score=32.82 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred EEEEecccccceeeccCChhHHHHHH----HhCCcEEE
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQS----QSGARIQL 70 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~----~tga~I~v 70 (291)
+++.|....-|.|||++|..|++|++ .++..+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 45566667789999999999987765 45554444
No 107
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=41.02 E-value=52 Score=27.34 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=45.0
Q ss_pred EEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 022837 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLK 191 (291)
Q Consensus 124 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~ 191 (291)
.-+.++...+.+++|+++..++.|.+.+++.|.+-. ...|=|.+.......+...|...
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~---------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ---------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT---------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC---------CcEEEEeCCchhHHHHHHHHHHH
Confidence 445688888899999999999999999999998854 24567888877555555555443
No 108
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=39.26 E-value=6.8 Score=33.02 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEecccccceeeccCChhHHHHHHH
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~ 63 (291)
+++.|....-|.|||++|..|++|+++
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 556666677899999999999877654
No 109
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=39.01 E-value=7 Score=33.14 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=24.8
Q ss_pred EEEEEecccccceeeccCChhHHHHHHHhC
Q 022837 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65 (291)
Q Consensus 36 ~~rilvp~~~vG~IIGk~G~~Ik~I~~~tg 65 (291)
.+++.|....-|.|||++|..|++|++...
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 466777778889999999999999887643
No 110
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=38.94 E-value=1.5e+02 Score=23.66 Aligned_cols=100 Identities=18% Similarity=0.070 Sum_probs=57.6
Q ss_pred EEEec--CHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCC
Q 022837 85 IMISG--TIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDH 162 (291)
Q Consensus 85 v~I~G--~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~ 162 (291)
+.++| +.+++..|.+.+...|.+-. . ......++++=.|-.-.++.=| ++..|....+..+...++..
T Consensus 61 iv~TGaks~e~~~~a~~~i~~~L~~lg--~---~~~~~~~~i~NIvas~dl~~~I-----~Le~la~~~~~~~~YEPE~f 130 (180)
T 1ytb_A 61 MVVTGAKSEDDSKLASRKYARIIQKIG--F---AAKFTDFKIQNIVGSCDVKFPI-----RLEGLAFSHGTFSSYEPELF 130 (180)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHT--C---CCCCEEEEEEEEEEEEECSSCB-----CHHHHHHHTTTTEECCTTTC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcC--C---CcccccceEEEEEEEEECCCcc-----CHHHHHHhcccceEECCccC
Confidence 67787 78899999999987765541 1 0111223333333222223322 56677665554444444221
Q ss_pred CC-------CC-----CCceEEEEEcC--HHHHHHHHHHHHHHHhc
Q 022837 163 SY-------YG-----LNDRLVTLTGT--LDEQMRALELILLKLSE 194 (291)
Q Consensus 163 ~~-------~~-----~~er~V~I~G~--~~~v~~A~~~I~~~l~e 194 (291)
+. +. -....|+|+|. .+.+.+|.+.|..+|.+
T Consensus 131 PGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~ 176 (180)
T 1ytb_A 131 PGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSE 176 (180)
T ss_dssp SSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 00 00 12245778886 78999999999999876
No 111
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=37.73 E-value=11 Score=31.96 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEecccccceeeccCChhHHHHHHHh
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~t 64 (291)
+++.|....-|.|||++|..|++|++..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHHH
Confidence 4455566778999999999998887653
No 112
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=37.48 E-value=6.7 Score=32.43 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=26.0
Q ss_pred EEEEEecCCccceeeccCChhHHHHHH----hccceEEE
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMD----DSQAVIKI 157 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~----~tGa~I~i 157 (291)
.+++.|....-|.|||++|+.|++|+. .++..+++
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 456777778889999999999988764 45544333
No 113
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=37.34 E-value=1.7e+02 Score=24.07 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=58.4
Q ss_pred EEEec--CHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCC
Q 022837 85 IMISG--TIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDH 162 (291)
Q Consensus 85 v~I~G--~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~ 162 (291)
+.++| +.+++..|.+.+.+.|.+..- ......++++-+|-.-.++.=| ++..|....+..+...++.-
T Consensus 99 iV~TGAkS~e~a~~A~~ki~~~L~~lG~-----~v~~~~fkIqNIvas~dl~f~I-----~Le~la~~~~~~~~YEPE~f 168 (218)
T 3eik_A 99 MVITGAKSEKSSRMAAQRYAKIIHKLGF-----NATFDDFKIQNIVSSCDIKFSI-----RLEGLAYAHSNYCSYEPELF 168 (218)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTTC-----CCCCEEEEEEEEEEEEECSSCB-----CHHHHHHHSTTTEECCTTTS
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCC-----CcccccceEEEEEEEEECCCcC-----cHHHHHHhccCCcEECCccC
Confidence 56666 588999999999877765411 1111234444445444444433 45666554444344333210
Q ss_pred C-------CC-----CCCceEEEEEcC--HHHHHHHHHHHHHHHhc
Q 022837 163 S-------YY-----GLNDRLVTLTGT--LDEQMRALELILLKLSE 194 (291)
Q Consensus 163 ~-------~~-----~~~er~V~I~G~--~~~v~~A~~~I~~~l~e 194 (291)
+ .+ --....|+|+|. .+.+..|.+.|..+|.+
T Consensus 169 PGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~ 214 (218)
T 3eik_A 169 PGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 214 (218)
T ss_dssp SSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 0 00 012346888887 78999999999999987
No 114
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=35.87 E-value=1.9e+02 Score=24.20 Aligned_cols=100 Identities=18% Similarity=0.079 Sum_probs=56.7
Q ss_pred EEEec--CHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhccceEEEecCCC
Q 022837 85 IMISG--TIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDH 162 (291)
Q Consensus 85 v~I~G--~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~ 162 (291)
+.++| +.+++..|.+.|...|.+..- . .....+.++=+|-.-.++.=| ++..|....+-.+...++..
T Consensus 121 iV~TGaks~e~a~~A~~~i~~~L~~lg~-~----~~~~~f~IqNIVas~dl~f~I-----~Le~la~~~~~~~~YEPE~f 190 (240)
T 1rm1_A 121 MVVTGAKSEDDSKLASRKYARIIQKIGF-A----AKFTDFKIQNIVGSCDVKFPI-----RLEGLAFSHGTFSSYEPELF 190 (240)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTC-C----CCCEEEEEEEEEEEEECSSCB-----CHHHHHHHTTTTEEEETTTE
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCC-C----cccCcceEEEEEEEEeCCCcc-----CHHHHHHhchhccEECCccC
Confidence 66777 788999999999877755411 1 011223332222222223222 56666655544444443210
Q ss_pred C-------CC-----CCCceEEEEEcC--HHHHHHHHHHHHHHHhc
Q 022837 163 S-------YY-----GLNDRLVTLTGT--LDEQMRALELILLKLSE 194 (291)
Q Consensus 163 ~-------~~-----~~~er~V~I~G~--~~~v~~A~~~I~~~l~e 194 (291)
+ .+ --....|+|+|. .+.+.+|...|..+|.+
T Consensus 191 PGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~~~Ai~~i~p~L~~ 236 (240)
T 1rm1_A 191 PGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSE 236 (240)
T ss_dssp EEEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 0 00 012346788887 78999999999999876
No 115
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=35.62 E-value=64 Score=23.13 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=35.9
Q ss_pred hhHHHHHHhccceEEEecCCCC-CC--CCCceEEEEEcCHHHHHHHHHHHHHH
Q 022837 142 ATIKSFMDDSQAVIKISRLDHS-YY--GLNDRLVTLTGTLDEQMRALELILLK 191 (291)
Q Consensus 142 ~~Ik~I~~~tGa~I~i~~~~~~-~~--~~~er~V~I~G~~~~v~~A~~~I~~~ 191 (291)
..|.++.+++|+.+.|....-. .. ....-+|.+.|+.+++++|+..+.+.
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3689999999999998762110 00 11234689999999999999988764
No 116
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=35.00 E-value=7.8 Score=32.66 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=22.9
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHH
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMD 149 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~ 149 (291)
..+++.|....-|.|||++|+.|++|+.
T Consensus 62 ~~i~I~I~t~rPg~vIGkkG~~I~~L~~ 89 (233)
T 3i1m_C 62 KSIRVTIHTARPGIVIGKKGEDVEKLRK 89 (233)
T ss_dssp SCBCCEEEESCHHHHHCSTTHHHHHHHH
T ss_pred CeEEEEEEECCCCccccCcchHHHHHHH
Confidence 3466777788889999999999988764
No 117
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=34.91 E-value=8.3 Score=32.70 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=25.0
Q ss_pred eEEEEEecCCccceeeccCChhHHHHHHh
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
..+++.|....-|.|||++|+.|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 46778888899999999999999998764
No 118
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.51 E-value=9.5 Score=31.80 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=22.3
Q ss_pred EEEEecccccceeeccCChhHHHHHHHhC
Q 022837 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSG 65 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~~Ik~I~~~tg 65 (291)
+++.|....-|.|||++|..|++|+++..
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l~ 100 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINVQ 100 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHHH
Confidence 44555667779999999999988877543
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=34.15 E-value=15 Score=31.89 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=23.2
Q ss_pred EEEecc-cccceeeccCChhHHHHHH--------HhCCcEEE
Q 022837 38 RFLVSN-PLAGAVIGKGGSTINDFQS--------QSGARIQL 70 (291)
Q Consensus 38 rilvp~-~~vG~IIGk~G~~Ik~I~~--------~tga~I~v 70 (291)
.+.|.. ++.+.||||+|+.||+|.. -.+++|.+
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 344543 4778999999999987654 45666555
No 120
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=33.50 E-value=53 Score=31.68 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=60.8
Q ss_pred eeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc-ccCCCCCceEEEE
Q 022837 48 AVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTKTKLRL 126 (291)
Q Consensus 48 ~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~-~~~~~~~~~~~~i 126 (291)
..+=.+|..||+|-++..-+|.|..+... .-. -++|.+.|.+.+-++..-.+ ...+. +-++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v 106 (640)
T 2xr1_A 45 RKFADDGNIIRNLAKELRTRIAMRPDPRV-----------LAT---PEDSISIIEEVVPKESVISSYYFDPD----SGEV 106 (640)
T ss_dssp HHHHHCTHHHHHHHHHHTSCEEEEECGGG-----------CCC---HHHHHHHHHHHSCGGGCEEEEEECTT----TSEE
T ss_pred HHhccccHHHHHHHHHhhceEEEeCChhh-----------cCC---HHHHHHHHHHhCCCccCccceeecCC----CceE
Confidence 34457889999999999999999765321 111 25677788766533311000 01111 3334
Q ss_pred EecCCccceeeccCChhHHHHHHhccceEEEec
Q 022837 127 IVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159 (291)
Q Consensus 127 ~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~ 159 (291)
++=...-|.++||.|.+.++|..++|-.-.+..
T Consensus 107 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 139 (640)
T 2xr1_A 107 IIEAEKPGLVIGKHGATLREITKQIGWIPKVVR 139 (640)
T ss_dssp EEEESSHHHHHCSSSHHHHHHHHHHCSEEEEEE
T ss_pred EEEeCCCCcccccchhhHHHHHhccCccccccc
Confidence 444444589999999999999999998766655
No 121
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=32.31 E-value=12 Score=31.62 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=22.6
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHh
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
.+++.|....-|.|||++|+.|++|+..
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 4556677788899999999999888654
No 122
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=30.54 E-value=1.2e+02 Score=25.10 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=44.5
Q ss_pred EEEEecCCccceeeccCChhHHHHHHhccceEEEecCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHH
Q 022837 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT-LDEQMRALELILLK 191 (291)
Q Consensus 124 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~-~~~v~~A~~~I~~~ 191 (291)
+-+.++...+.+++|+++..++.|.+.+++.|-+-. ...|-|.+. +..+..+...|...
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~---------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR---------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET---------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC---------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 456788899999999999999999989999998864 346778864 55555555555443
No 123
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=30.22 E-value=96 Score=25.04 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=69.9
Q ss_pred HHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhccccccCCCCCceEE-----EEEecCCc
Q 022837 58 NDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKL-----RLIVPNSS 132 (291)
Q Consensus 58 k~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~-----~i~VP~~~ 132 (291)
-.+-+.+++.+...+ ...+ ..-.+.|+|...+|..|++...+...+.+............... ...-+...
T Consensus 21 D~a~Kaa~V~l~~~~--~~~~--G~~~~ii~Gdv~aV~~Av~a~~~~~~~~vv~s~VI~rph~el~~aL~~~~~~~~~~A 96 (192)
T 3n79_A 21 DAMLKSANVDLLVSK--TISP--GKFLLMLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQA 96 (192)
T ss_dssp HHHHHHSSCEEEEEE--EETT--TEEEEEEEECHHHHHHHHHHHHHHHGGGEEEEEEEEEECTTHHHHHHSCCCCSCCSE
T ss_pred HHHhccCCcEEEEEE--eecC--ceEEEEEEccHHHHHHHHHHHHHHhhceEEEEEEeCCCCHHHHHHHhccccCCCCce
Confidence 344555666665543 2222 34578999999999999999887665532111000000000000 00112344
Q ss_pred cceeeccCC-hhH---HHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 133 CGSIIGKAG-ATI---KSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 133 vg~IIGk~G-~~I---k~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
+|.|--++- ..| ...-...++.+-.... .......-.+.|+|+..+|+.|++...+.+.+
T Consensus 97 lGiie~~~~~~ai~AaD~a~KAA~V~lv~~~~--~~g~~g~~~~~i~GdvsaV~~Av~a~~~~~~~ 160 (192)
T 3n79_A 97 VGIVETWSVAACISAADRAVKGSNVTLVRVHM--AFGIGGKCYMVVAGDVSDVNNAVTVASESAGE 160 (192)
T ss_dssp EEEEEEESHHHHHHHHHHHHHTSSCEEEEEEE--SSSTTSEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCHHHHHHHHHHHHhHCCcEEEEEEe--ccccCCEEEEEEEECHHHHHHHHHHHHHHHHh
Confidence 455554431 122 2223334444333221 11113457899999999999999999988766
No 124
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.10 E-value=10 Score=31.66 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=22.3
Q ss_pred EEEEEecCCccceeeccCChhHHHHHHh
Q 022837 123 KLRLIVPNSSCGSIIGKAGATIKSFMDD 150 (291)
Q Consensus 123 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~ 150 (291)
.+++.|....-|.|||++|+.|++|+..
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 4556677777899999999999888654
No 125
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=29.25 E-value=38 Score=32.80 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=58.2
Q ss_pred ceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc-ccCCCCCceEEE
Q 022837 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTKTKLR 125 (291)
Q Consensus 47 G~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~-~~~~~~~~~~~~ 125 (291)
...+=.+|..||+|-++..-+|.|..+.... -. -++|.+.|.+.+-++..-.+ ...+. +-+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 110 (651)
T 3af5_A 49 PEAIMKDGELIKDLAKVLKKRISVRPDPEVL-----------LP---PEEAEKLIFEIVPKEAEITNIAFDPS----VGE 110 (651)
T ss_dssp CC-----CCSHHHHHHHHTSCEEEECCGGGS-----------CC---HHHHHHHHHHHSCGGGCCCEEEEETT----TTE
T ss_pred HHHhhcccHHHHHHHHHhhceEEEeCChhhc-----------CC---HHHHHHHHHHhCCCccCccceeecCC----Cce
Confidence 3455578899999999999999997653211 11 25677788765533311000 00111 333
Q ss_pred EEecCCccceeeccCChhHHHHHHhccceEEEec
Q 022837 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159 (291)
Q Consensus 126 i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~ 159 (291)
+++=...-|.++||.|.+.++|..++|-.-.+..
T Consensus 111 v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 144 (651)
T 3af5_A 111 VLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVR 144 (651)
T ss_dssp EEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEEE
T ss_pred EEEEECCCCccccccchhHHHHhhccCccccccc
Confidence 4444445589999999999999999998766655
No 126
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=28.37 E-value=81 Score=22.57 Aligned_cols=63 Identities=8% Similarity=0.146 Sum_probs=41.4
Q ss_pred EEEEEEecccccceeeccCChhHHHHHHHhCCcEEEcCCCC-CCCCC--CceEEEEecCHHHHHHHHHHHHH
Q 022837 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHE-FFPGT--TDRIIMISGTIDEILRAVDLVID 103 (291)
Q Consensus 35 ~~~rilvp~~~vG~IIGk~G~~Ik~I~~~tga~I~v~~~~~-~~p~~--~er~v~I~G~~~~v~~A~~~I~~ 103 (291)
..+|+..+.+.+ ..-.|.+|-+++++.++|-..+- .+.+. ..=++.+.|..+++.+|+..+.+
T Consensus 22 ~lvrL~f~g~~~------~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 22 PMLRLEFTGQSV------DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp EEEEEEEEEECT------TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcc------ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 445665544432 23478999999999999976321 00000 12368889999999999888763
No 127
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.10 E-value=56 Score=31.48 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=60.2
Q ss_pred ceeeccCChhHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhcccc-ccCCCCCceEEE
Q 022837 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTKTKLR 125 (291)
Q Consensus 47 G~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~-~~~~~~~~~~~~ 125 (291)
...+=.+|..||+|-++..-+|.|..+.... -. -++|.+.|.+.+-++..-.+ ...+. +-+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 101 (636)
T 2ycb_A 40 PEIITENGNLIRDIAKDIRKRIIIRSDRSVL-----------MD---PEKAIRKIHEIVPEEAKITNISFDDV----TCE 101 (636)
T ss_dssp THHHHSCTHHHHHHHHHHTSCEEEEECGGGC-----------CC---HHHHHHHHHHTSCSTTCEEEEEEETT----TTE
T ss_pred HHHhhcccHHHHHHHHHhhceEEEeCChhhc-----------CC---HHHHHHHHHHhCCCccCccceEecCC----Cce
Confidence 3445578999999999999999997653211 11 25677777755433210000 01111 223
Q ss_pred EEecCCccceeeccCChhHHHHHHhccceEEEec
Q 022837 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159 (291)
Q Consensus 126 i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~ 159 (291)
+++=...-|.+||+.|.+.++|.+++|-+-.+..
T Consensus 102 v~~~~~~p~~~~g~~~~~~~~i~~~~~~~~~~~~ 135 (636)
T 2ycb_A 102 VIIEARKPGLVIGKYGSTSREIVKNTGWAPKILR 135 (636)
T ss_dssp EEEEESCTHHHHCTTSHHHHHHHHHHCCEEEEEE
T ss_pred EEEEECCCCccccccchhHHHHhhccCCccceee
Confidence 3334444489999999999999999998766654
No 128
>3nwg_A Microcompartments protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.70A {Desulfitobacterium hafniense}
Probab=27.75 E-value=2.1e+02 Score=22.71 Aligned_cols=129 Identities=14% Similarity=0.095 Sum_probs=67.9
Q ss_pred HHHHhCCcEEEcCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEE-----EEecCCccc
Q 022837 60 FQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR-----LIVPNSSCG 134 (291)
Q Consensus 60 I~~~tga~I~v~~~~~~~p~~~er~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~-----i~VP~~~vg 134 (291)
+-+..++.+...+ ...+ ..-.+.|+|...+|..|++...+.....+-....-.......... ..-+.+.+|
T Consensus 23 a~Kaa~V~l~~~~--~~~~--G~~~vii~Gdv~aV~~Av~a~~~~~~~~vv~s~VIprP~~~v~~~L~~~~~~~~~~AlG 98 (182)
T 3nwg_A 23 MLKAAQVDLLEAK--PVCP--GKYIVLICGDVAAVQSSVTAGKTMAAHSVLDDFILPNVHPQVLTAISAATPLTLIKALG 98 (182)
T ss_dssp HHHHSSEEEEEEE--ECST--TCEEEEEEECHHHHHHHHHHHHHHHGGGEEEEEEESSCCHHHHHHHTTCCCCCCCCEEE
T ss_pred HhccCCeEEEEEE--eccC--cEEEEEEEecHHHHHHHHHHHHHhccCeEEEEEEeCCCCHHHHHHhcccccccccCceE
Confidence 3445555554432 2222 345889999999999999998876644321110000000000000 011334556
Q ss_pred eeeccCChhH----HHHHHhccceEEEecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 022837 135 SIIGKAGATI----KSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (291)
Q Consensus 135 ~IIGk~G~~I----k~I~~~tGa~I~i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~l~e 194 (291)
.|-.++-... ...-...++++-.... .......-.+.|+|+..+|+.|++...+..++
T Consensus 99 iie~~~~~~~i~AaD~a~KaA~V~l~~~~~--~~g~~g~~~v~i~GdvsaV~~Av~a~~~~~~~ 160 (182)
T 3nwg_A 99 IIETFSIASLIVAADTAAKTGQVDLVEIRI--GMGIGGKSFVTLTGDVASVESSVAAGVMLASE 160 (182)
T ss_dssp EEEESSHHHHHHHHHHHHHSSSCEEEEEEC--CTTTTTCEEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhhCCeEEEEEEe--ccCcCcEEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 6655533321 2222333444333321 11112456899999999999999999988765
No 129
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=27.56 E-value=54 Score=26.10 Aligned_cols=57 Identities=7% Similarity=0.135 Sum_probs=40.3
Q ss_pred EEEEecccccceeeccCCh-hHHHHHHHhCCcEEEcCCCCCCCCCCceEEEEec-CHHHHHHHHHHHH
Q 022837 37 IRFLVSNPLAGAVIGKGGS-TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISG-TIDEILRAVDLVI 102 (291)
Q Consensus 37 ~rilvp~~~vG~IIGk~G~-~Ik~I~~~tga~I~v~~~~~~~p~~~er~v~I~G-~~~~v~~A~~~I~ 102 (291)
+-+.|+...+.+++|+.|. .++.|.+.+++.|-+-.+ -| |.|.+ +......+...|.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N--------G~-IWi~~~~~~~~~~v~~aI~ 151 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLN--------GK-IWVKCEELSNTLACYRTIM 151 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETT--------TE-EEEECSSHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECC--------cE-EEEecCCHHHHHHHHHHHH
Confidence 3467888899999998888 889999999999999543 24 55665 4444443334444
No 130
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=27.51 E-value=36 Score=27.15 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=23.8
Q ss_pred EEEEEEecccccceeeccCChhHHHH-HHHh
Q 022837 35 TYIRFLVSNPLAGAVIGKGGSTINDF-QSQS 64 (291)
Q Consensus 35 ~~~rilvp~~~vG~IIGk~G~~Ik~I-~~~t 64 (291)
+...+.||.++.|.+|| .+|+++ ++++
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 55678999999999999 699995 9999
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=26.13 E-value=32 Score=29.65 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhccc--------cccCCCCCceEEEEEecCCcc-ceeeccCChhHHHHHHhccceE
Q 022837 94 ILRAVDLVIDKLLTELHAE--------DQADDVGTKTKLRLIVPNSSC-GSIIGKAGATIKSFMDDSQAVI 155 (291)
Q Consensus 94 v~~A~~~I~~~i~~~~~~~--------~~~~~~~~~~~~~i~VP~~~v-g~IIGk~G~~Ik~I~~~tGa~I 155 (291)
.+...+.+++.+.++.+.. .......-.+...++|..+.. +.|||++|+.||+|-......|
T Consensus 195 ~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i 265 (301)
T 1ega_A 195 SEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDM 265 (301)
T ss_dssp HHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHH
No 132
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=24.87 E-value=14 Score=32.09 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=24.2
Q ss_pred EEEEEec-CCccceeeccCChhHHHHH--------HhccceEEE
Q 022837 123 KLRLIVP-NSSCGSIIGKAGATIKSFM--------DDSQAVIKI 157 (291)
Q Consensus 123 ~~~i~VP-~~~vg~IIGk~G~~Ik~I~--------~~tGa~I~i 157 (291)
...+.|. .++.+.|||++|+.||+|. +-.|++|.+
T Consensus 231 ~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 231 KAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 3445555 4566899999999998775 445555554
No 133
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=24.32 E-value=48 Score=26.34 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.5
Q ss_pred eEEEEEecCCccceeeccCChhHHHH-HHhc--------cc---eEEEec
Q 022837 122 TKLRLIVPNSSCGSIIGKAGATIKSF-MDDS--------QA---VIKISR 159 (291)
Q Consensus 122 ~~~~i~VP~~~vg~IIGk~G~~Ik~I-~~~t--------Ga---~I~i~~ 159 (291)
....+.||.++.|.+|| .+|+++ .+++ |+ .+.+..
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 45678899999999999 699995 9989 98 455554
No 134
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=23.75 E-value=3e+02 Score=22.56 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=47.7
Q ss_pred eEEEEecCHHHHHHHHHHHHHHHhhhhccccccCCCCCceEEEEEecCCccceeeccCChhHHHHHHhc------cceEE
Q 022837 83 RIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS------QAVIK 156 (291)
Q Consensus 83 r~v~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~t------Ga~I~ 156 (291)
..+.|+|+++++.++.++|. .+..... .....+.+-...+.-+. ..++.+.... +.+|.
T Consensus 149 N~Liv~g~~~~i~~i~~li~-~lD~p~~----------~~~~vi~l~~a~A~dl~----~~L~~~~~~~~~~~~~~~~v~ 213 (246)
T 4e9j_A 149 NALIISDRSANIARIEDVIR-QLDQKGS----------HDYSVINLRYGWVMDAA----EVLNNAMSRGQAKGAAGAQVI 213 (246)
T ss_dssp TEEEEEECHHHHHHHHHHHH-HHHTCSC----------CCEEEEECSSSCHHHHH----HHHHHHHHHTCSTTCTTCEEE
T ss_pred CEEEEEcCHHHHHHHHHHHH-Hhccccc----------cceEEEEecCCCHHHHH----HHHHHHhccCCCCCCCceEEE
Confidence 56889999999999988886 4543311 11222223333322221 1222222211 12333
Q ss_pred EecCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 022837 157 ISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLK 191 (291)
Q Consensus 157 i~~~~~~~~~~~er~V~I~G~~~~v~~A~~~I~~~ 191 (291)
..+ ....+.|+|+++.+...+.+|.++
T Consensus 214 ad~--------rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 214 ADA--------RTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp EEG--------GGTEEEEESSHHHHHHHHHHHHHH
T ss_pred EeC--------CCCeEEEECCHHHHHHHHHHHHHh
Confidence 332 234577899999998888887763
No 135
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=21.16 E-value=77 Score=22.83 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=27.7
Q ss_pred EEEeecCCCcceeEEeecCccceehccccccceEEeec
Q 022837 253 VLLPWPLNPVGMLLIILIAQPIICHFSLSIYEEIRLNE 290 (291)
Q Consensus 253 ~~i~iP~~~vG~iIG~~~gg~~ik~~~~~tga~i~~~~ 290 (291)
--+.|.+..--.||=--+.-.+|||++.+-|.+|-|+.
T Consensus 74 niipvtdsksdgiiyltiskdnicqfsdekgeqidins 111 (146)
T 4a4y_A 74 NIIPVTDSKSDGIIYLTISKDNICQFSDEKGEQIDINS 111 (146)
T ss_dssp EEEEETTCSSCEEEEEEECTTCCEEEECTTSCEECCCS
T ss_pred ceeecccCCCCcEEEEEEecCcceecccccCcEeeccc
Confidence 34456666666665544466899999999999998763
Done!