BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022840
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 91/124 (73%)
Query: 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
R LH + RVGDL R+I +YT+ GM+LLR + PE KYS AF+G+GPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIF 142
GV Y++GT +GH+A++ ++ + E IR GGNVTRE GP+KG TT AFV+DPDGY
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 143 ELIQ 146
ELI+
Sbjct: 122 ELIE 125
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG 213
L MLRVGDL RSI FY K LGMKLLRT ++PE K +LA +GY E + V+EL Y++G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 214 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDG 273
V +Y G AY +A+S D+ ++ E + ++ GG +TR+ GP+ G T I DPDG
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDG 118
Query: 274 WKTVLVDNED 283
+K L++ +D
Sbjct: 119 YKIELIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 5/125 (4%)
Query: 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81
RR LH + RVGDLDR+IK+YTE GM++LRK DVPE+KY+ FLG+GPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYI 141
YGVTSY +GH+AI EDV ++V ++R + E + AFV DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDE-----SGFMAFVVDPDGYY 121
Query: 142 FELIQ 146
EL+
Sbjct: 122 IELLN 126
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 13/140 (9%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG 213
+ M+RVGDL RSIKFY + LGMK+LR D PE K L LGY E +TVLEL Y+YG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 214 VTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTK--ITSFVDP 271
VT Y AY +AI +DV +EL + + PI + + VDP
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV-----------KELVADMRKHDVPIDYEDESGFMAFVVDP 117
Query: 272 DGWKTVLVDNEDFLKELQSE 291
DG+ L++ + +++ +++
Sbjct: 118 DGYYIELLNEKTMMEKAEAD 137
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 131/286 (45%), Gaps = 51/286 (17%)
Query: 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-----------KYSNAFLGFGPE 70
RR LH V++VG+ +T ++Y + GM++LR + E K+S +GFGPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 QSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTH 130
+FV ELTYNYGV Y +G F + +A+ + V N R + PL +
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASS---QAVSNAR-------KLEWPLTEVAEG 135
Query: 131 FAFVKDPDGYIFELIQRG-PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK 189
+ P GY F L R P +P+ +V L V DL +S+ ++ LGMK+ + +
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQ-- 193
Query: 190 CALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST--------DDVYKSAE--- 238
A+LGYA D LEL G ++ A+ ++A S +D+ K
Sbjct: 194 --RALLGYA--DNQCKLELQGVKGGVDHAA--AFGRIAFSCPQKELPDLEDLMKRENQKI 247
Query: 239 VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284
+ LV+ + GK T Q + DPDG + V +E F
Sbjct: 248 LTPLVSLDTPGKATVQ----------VVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 32/158 (20%)
Query: 17 PKKDKRRFL--HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF------- 67
P + FL + R+ D +++ +YT G+ LL+K D P K+S FL +
Sbjct: 23 PDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIP 82
Query: 68 --GPEQSYF------VVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENI 110
E++ + +ELT+N+G SY G GFGH+ IA DVY +
Sbjct: 83 KDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 111 RAKGGNVTREP--GPLKGMTTHFAFVKDPDGYIFELIQ 146
G ++P G +KG+ AF++DPDGY E++
Sbjct: 143 EELGVKFVKKPDDGKMKGL----AFIQDPDGYWIEILN 176
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 48/194 (24%)
Query: 120 EPGPLK-GMT--THFAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P G+T T F+ DPD + + L Q MLR+ D +S+ FY + LG
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 177 MKLLRTIDSPELKCALAMLGYAEED---------------QTTVLELAYSYGVTE----- 216
+ LL+ +D P +K +L L Y +++ + LEL +++G +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQS 114
Query: 217 YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGGKITRQP--GPIPGLNTKITSFV- 269
Y GN+ + + I+ DVY + + +ELG K ++P G + GL +F+
Sbjct: 115 YHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGVKFVKKPDDGKMKGL-----AFIQ 165
Query: 270 DPDG-WKTVLVDNE 282
DPDG W +L N+
Sbjct: 166 DPDGYWIEILNPNK 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY------------ 73
+ RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 33 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 92
Query: 74 ---FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH+ IA DVY + G ++P
Sbjct: 93 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 122 --GPLKGMTTHFAFVKDPDGYIFELIQ 146
G +KG+ AF++DPDGY E++
Sbjct: 153 DDGKMKGL----AFIQDPDGYWIEILN 175
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 201
L Q MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 202 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 249
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 146
Query: 250 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 282
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 147 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 178
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY------------ 73
+ RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 37 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 96
Query: 74 ---FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH+ IA DVY + G ++P
Sbjct: 97 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 156
Query: 122 --GPLKGMTTHFAFVKDPDGYIFELIQ 146
G +KG+ AF++DPDGY E++
Sbjct: 157 DDGKMKGL----AFIQDPDGYWIEILN 179
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 201
L Q MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 202 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 249
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 150
Query: 250 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 282
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 151 KFVKKPDDGKMKGL-----AFIQDPDGYWIEILNPNK 182
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY-------------- 73
+ RV D +++ +YT GM L++K D P K+S FL + +
Sbjct: 35 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 94
Query: 74 -FVVELTYNYG-----VTSYDIGT----GFGHLAIATEDVYKMVENIRAKGGNVTREP-- 121
+ELT+N+G SY G GFGH+ IA DVY + G ++P
Sbjct: 95 KATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDD 154
Query: 122 GPLKGMTTHFAFVKDPDGYIFELIQ 146
G +KG+ AF++DPDGY +++
Sbjct: 155 GKMKGL----AFIQDPDGYWIQILN 175
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 37/157 (23%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED------------ 201
L + MLRV D +S+ FY + LGM L++ D P +K +L L Y +++
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 202 ---QTTVLELAYSYGVTE-----YTKGNA----YAQVAISTDDVYKSAEVVNLVTQELGG 249
+ LEL +++G + Y GN+ + + I+ DVY + + +ELG
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF----EELGV 146
Query: 250 KITRQP--GPIPGLNTKITSFV-DPDG-WKTVLVDNE 282
K ++P G + GL +F+ DPDG W +L N+
Sbjct: 147 KFVKKPDDGKMKGL-----AFIQDPDGYWIQILNPNK 178
>pdb|3BQX|A Chain A, High Resolution Crystal Structure Of A Glyoxalase-Related
Enzyme From Fulvimarina Pelagi
Length = 150
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 31 VGDLDRTIKYYTECFGMELLRKRDVPEEKY--SNAFLGFGPEQSYFVVELTYNYGV--TS 86
+GDL+ + ++Y E FG + + PE + N F+ ++ V L + GV TS
Sbjct: 13 IGDLEASARFYGEGFGWAPVFRN--PEIIFYQXNGFV----LATWLVQNLQEDVGVAVTS 66
Query: 87 YDIGTGFGHLAIATEDVYKMVENIRAKGGNVTR--EPGPLKGMTTHFAFVKDPDGYIFEL 144
H A +V + E + A GG + R + P G+ +V DPDG+I+E+
Sbjct: 67 RPGSXALAHNVRAETEVAPLXERLVAAGGQLLRPADAPPHGGLR---GYVADPDGHIWEI 123
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT 85
H V + + +Y ++LL D+P + AFL G + + L+ +
Sbjct: 11 HIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIA 70
Query: 86 SY--DIGTGFGHLAIATEDVYKMVENIRAKGGN-VTREPGP-LKGMTTHFAFVKDPDGYI 141
+ G G H+AI + + + ++ ++ G + EP P +G F + G +
Sbjct: 71 KFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVL 130
Query: 142 FELIQRGPTPEPL 154
+E ++ E L
Sbjct: 131 YEFCEKKEQAENL 143
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 25/116 (21%)
Query: 90 GTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149
G G +A+AT DV E G R PG A + + LIQR
Sbjct: 72 GDGVADIAMATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDG 131
Query: 150 TPEPL-------------------------CQVMLRVGDLGRSIKFYEKALGMKLL 180
T L + L GDLG ++++YE+ALG + +
Sbjct: 132 TSAELPPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQI 187
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT 85
H + T +Y E G E+LR+ PE+ L G ++ + +
Sbjct: 8 HVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARP 66
Query: 86 SYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMT-THFAFVKDPDGYIFEL 144
SY G HLA E + +++ + +G + EP + T F DPDG EL
Sbjct: 67 SYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGLPLEL 124
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVEL------- 78
H Y D D KYY E FG L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAF 133
T + ++ G H+A +D+ + +R +G + + L G +F
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFMH 131
Query: 134 VKDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 17 PKKDKRRFLH---AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSY 73
PK ++ RFLH + VG+ + +Y G E L + + E S + +Q
Sbjct: 9 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGL--ETGSREVVSHVIKQGK 66
Query: 74 FVVELT-----YNYGVTSYDI--GTGFGHLAIATEDVYKMVENIRAKGGNVTREP 121
V L +N + + + G G +A ED +V+ R +G + REP
Sbjct: 67 IVFVLCSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCEHIVQKARERGAKIVREP 121
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 87 YDIGTGFGHLAIATEDVYKMVENIRAKG 114
Y+ G G H+A+ TED+ + ++R +G
Sbjct: 258 YNGGAGVQHIALRTEDIITTIRHLRERG 285
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNY 82
R H V DL++ +Y G ++ +PE S F+ G + + L +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDS 64
Query: 83 GVTSY---DIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDP 137
+ + + G H+ I +++ V +++ K E + G F KD
Sbjct: 65 PIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDC 124
Query: 138 DGYIFELIQ 146
G + EL Q
Sbjct: 125 GGVLVELEQ 133
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVEL------- 78
H Y D D KYY E FG L + + PE+ + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPL--KGMTTHFAF 133
T + ++ G H A +D+ + +R +G + + L G +F
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFXH 131
Query: 134 VKDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 18 KKDKRRFLH---AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYF 74
K ++ RFLH + VG+ + +Y G E L R + E S + +Q
Sbjct: 3 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGL--ETGSREVVSHVIKQGKI 60
Query: 75 VVELT-----YNYGVTSYDI--GTGFGHLAIATEDVYKMVENIRAKGGNVTREP 121
V L+ +N + + + G G +A ED +V+ R +G + REP
Sbjct: 61 VFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREP 114
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 87 YDIGTGFGHLAIATEDVYKMVENIRAKG 114
Y+ G G H+A+ TED+ + ++R +G
Sbjct: 251 YNGGAGVQHIALKTEDIITAIRHLRERG 278
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 60 YSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTG---------FGHLAIATEDVYKMVENI 110
+S A GFG E + +V+L V SY+ TG GHLA D Y
Sbjct: 70 HSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKY------ 123
Query: 111 RAKGGNVTREPGPLKGMTTHFA 132
G ++ P G++ HFA
Sbjct: 124 ---GRAISHGTCPGVGISGHFA 142
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGP-EQSYFVVELT-YNYG 83
H V D D++ ++Y G E++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 84 VTSYDI-----GTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPD 138
I G HLA EDV + + A G V E AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVE-EVRYDDYTGKKMAFFFDPD 126
Query: 139 GYIFEL 144
G EL
Sbjct: 127 GLPLEL 132
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 59 KYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVENI 110
KYS FL + + +L T Y+IGTG GHL + K V +I
Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSI 57
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 31 VGDLDRTIKYYTECFGMELLRKRDVP--EEKYSNAFLGFGPEQSYFVVELTYNYGVTSYD 88
V D + +YT G L K DVP +++ P+ + ++E + + VT +
Sbjct: 34 VDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQLLLEPSSHAAVTPFK 91
Query: 89 ---IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145
+ G + A +D+ E + A G T+EP + T A + D G + +L
Sbjct: 92 EALVADGIPAASFAVDDIAAEYERLSALGVRFTQEPTDXGPVVT--AILDDTCGNLIQLX 149
Query: 146 Q 146
Q
Sbjct: 150 Q 150
>pdb|2QNT|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Agrobacterium Tumefaciens Str. C58
Length = 141
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 161 VGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAY--------SY 212
V D+ RS FY LG+K+L S L G+A + ++ E + +Y
Sbjct: 16 VRDINRSKSFYRDRLGLKILEDFGS----FVLFETGFAIHEGRSLEETIWRTSSDAQEAY 71
Query: 213 GVTEYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD 272
G +A V + D+ E+++ + ++ G+ ++ F DPD
Sbjct: 72 GRRNXLLYFEHADVDAAFQDIAPHVELIHPLERQAWGQ-------------RVFRFYDPD 118
Query: 273 G 273
G
Sbjct: 119 G 119
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT 85
H V V D+ T K+Y + G + + L FG Q + +L + +
Sbjct: 13 HLVLTVADIPTTTKFYEKVLGXKAVSFGS------GRIALEFG-HQKINLHQLGHEFEPK 65
Query: 86 SYDIGTGFGHLAIATE-DVYKMVENIRAKGGNVTREPGPLK-----GMTTHFAFVKDPDG 139
+ ++ TG L T+ D+ E + +G V GP+K G T F F +DPDG
Sbjct: 66 AQNVRTGSADLCFITDIDLSDAXEYVENQG--VVIXEGPVKRTGAQGAITSFYF-RDPDG 122
Query: 140 YIFEL 144
+ E+
Sbjct: 123 NLIEV 127
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 162 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLG------YAEED-QTTVLEL 208
G +G + KALG KL+ T+ SPE LG Y+ ED VLEL
Sbjct: 151 GGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLEL 204
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ-SYFVVELTYN 81
R H V V D+ TI++Y E G + K + L FG ++ + E+ +
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFSAVTF------KQNRKALIFGAQKINLHQQEMEFE 76
Query: 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFA--FVKDPDG 139
+ G+ I + + +V I G ++ P G T +++DPDG
Sbjct: 77 PKASRPTPGSA-DLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDG 135
Query: 140 YIFELIQ 146
+ E+ Q
Sbjct: 136 NLIEISQ 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,824,553
Number of Sequences: 62578
Number of extensions: 380601
Number of successful extensions: 1119
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 50
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)