Query 022840
Match_columns 291
No_of_seqs 171 out of 2156
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 6.5E-45 1.4E-49 309.0 33.7 284 2-289 3-286 (286)
2 TIGR03211 catechol_2_3 catecho 100.0 1.3E-31 2.7E-36 230.0 27.8 237 21-280 2-264 (303)
3 KOG2943 Predicted glyoxalase [ 100.0 3E-32 6.5E-37 211.3 21.3 260 11-289 5-278 (299)
4 TIGR02295 HpaD 3,4-dihydroxyph 100.0 6.9E-31 1.5E-35 224.6 28.2 237 20-282 1-257 (294)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 2.4E-30 5.2E-35 220.2 26.4 232 21-280 1-262 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 9.6E-22 2.1E-26 171.6 24.9 223 22-255 1-267 (353)
7 COG2514 Predicted ring-cleavag 99.9 1.2E-21 2.6E-26 156.9 20.2 195 20-232 7-242 (265)
8 TIGR00068 glyox_I lactoylgluta 99.9 9.7E-20 2.1E-24 140.1 18.5 139 12-150 6-144 (150)
9 PLN02875 4-hydroxyphenylpyruva 99.9 1.4E-19 3E-24 156.7 21.1 224 24-255 1-295 (398)
10 PLN03042 Lactoylglutathione ly 99.8 4.8E-19 1E-23 139.3 19.2 147 1-149 1-176 (185)
11 PLN02367 lactoylglutathione ly 99.8 7.1E-20 1.5E-24 146.7 13.4 129 152-286 74-227 (233)
12 TIGR00068 glyox_I lactoylgluta 99.8 1.3E-19 2.9E-24 139.4 14.0 137 150-290 14-150 (150)
13 PRK10291 glyoxalase I; Provisi 99.8 4.4E-19 9.6E-24 132.9 16.5 123 28-150 1-123 (129)
14 PLN02367 lactoylglutathione ly 99.8 8.1E-19 1.8E-23 140.7 17.9 128 20-149 72-224 (233)
15 PRK10291 glyoxalase I; Provisi 99.8 6.9E-19 1.5E-23 131.9 12.1 124 158-285 1-124 (129)
16 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 5.5E-18 1.2E-22 129.1 16.1 123 21-147 1-141 (142)
17 PRK11478 putative lyase; Provi 99.8 5.2E-18 1.1E-22 127.0 15.6 123 19-146 2-128 (129)
18 KOG0638 4-hydroxyphenylpyruvat 99.8 7E-19 1.5E-23 142.7 10.6 229 20-256 14-292 (381)
19 cd08342 HPPD_N_like N-terminal 99.8 1.5E-17 3.2E-22 125.8 16.3 120 24-150 1-126 (136)
20 cd07233 Glyoxalase_I Glyoxalas 99.8 1.6E-17 3.6E-22 122.8 16.2 120 24-145 1-121 (121)
21 cd08358 Glo_EDI_BRP_like_21 Th 99.8 2.1E-17 4.5E-22 122.0 16.3 115 22-146 1-126 (127)
22 PLN03042 Lactoylglutathione ly 99.8 5.6E-18 1.2E-22 133.3 13.4 127 152-284 26-177 (185)
23 PRK04101 fosfomycin resistance 99.8 4.2E-17 9.2E-22 123.8 15.7 118 20-148 1-120 (139)
24 cd07233 Glyoxalase_I Glyoxalas 99.8 2.6E-17 5.6E-22 121.7 13.8 120 154-279 1-121 (121)
25 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 3.1E-17 6.8E-22 121.9 14.2 119 23-145 1-125 (125)
26 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.9E-17 4E-22 126.2 13.2 122 152-281 2-141 (142)
27 cd08342 HPPD_N_like N-terminal 99.8 1.4E-17 3.1E-22 125.9 12.3 124 154-288 1-130 (136)
28 PLN02300 lactoylglutathione ly 99.8 1.4E-17 2.9E-22 141.7 13.5 133 150-286 21-153 (286)
29 cd07243 2_3_CTD_C C-terminal d 99.8 7.8E-17 1.7E-21 122.7 16.0 120 19-147 2-125 (143)
30 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 6.7E-17 1.4E-21 120.0 15.1 121 22-146 2-125 (125)
31 cd07257 THT_oxygenase_C The C- 99.7 3.3E-17 7.1E-22 126.3 13.7 119 23-148 1-126 (153)
32 TIGR03645 glyox_marine lactoyl 99.7 1.4E-16 3E-21 123.9 16.5 126 21-149 2-153 (162)
33 cd08358 Glo_EDI_BRP_like_21 Th 99.7 5.1E-17 1.1E-21 119.9 12.5 114 153-280 2-126 (127)
34 cd07265 2_3_CTD_N N-terminal d 99.7 1.8E-16 3.9E-21 117.5 15.4 116 21-148 2-120 (122)
35 cd08360 MhqB_like_C C-terminal 99.7 2.9E-16 6.2E-21 118.4 16.1 117 22-148 2-121 (134)
36 cd07243 2_3_CTD_C C-terminal d 99.7 1.1E-16 2.5E-21 121.8 13.6 121 151-281 4-125 (143)
37 TIGR03081 metmalonyl_epim meth 99.7 1.2E-16 2.7E-21 119.3 13.4 119 23-146 1-128 (128)
38 TIGR03645 glyox_marine lactoyl 99.7 9E-17 2E-21 125.0 13.1 127 151-284 2-154 (162)
39 cd08360 MhqB_like_C C-terminal 99.7 1.5E-16 3.3E-21 119.9 13.0 122 151-283 1-122 (134)
40 cd09014 BphC-JF8_C_like C-term 99.7 6.5E-16 1.4E-20 120.7 16.3 124 19-148 2-128 (166)
41 cd07257 THT_oxygenase_C The C- 99.7 4.5E-17 9.7E-22 125.6 9.4 120 153-283 1-127 (153)
42 PF00903 Glyoxalase: Glyoxalas 99.7 1.4E-16 3.1E-21 118.6 11.0 120 23-144 1-128 (128)
43 cd08361 PpCmtC_N N-terminal do 99.7 3.7E-16 8.1E-21 116.2 13.2 113 20-148 3-120 (124)
44 cd08364 FosX FosX, a fosfomyci 99.7 8.6E-16 1.9E-20 115.3 15.2 120 20-148 1-123 (131)
45 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 2.5E-16 5.5E-21 117.0 12.2 119 153-279 1-125 (125)
46 cd07237 BphC1-RGP6_C_like C-te 99.7 7.5E-16 1.6E-20 118.9 15.1 121 20-148 6-132 (154)
47 PRK11478 putative lyase; Provi 99.7 3.5E-16 7.6E-21 117.1 12.7 120 152-280 5-128 (129)
48 cd09013 BphC-JF8_N_like N-term 99.7 1.1E-15 2.4E-20 113.1 15.0 114 19-147 2-118 (121)
49 cd08363 FosB FosB, a fosfomyci 99.7 5.6E-16 1.2E-20 116.3 13.5 114 24-148 1-116 (131)
50 cd09011 Glo_EDI_BRP_like_23 Th 99.7 7.6E-16 1.6E-20 113.8 13.9 114 22-147 1-119 (120)
51 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1.2E-15 2.5E-20 113.2 14.7 118 21-146 1-124 (125)
52 cd07258 PpCmtC_C C-terminal do 99.7 4E-16 8.7E-21 118.3 12.3 119 155-286 1-119 (141)
53 cd07266 HPCD_N_class_II N-term 99.7 1.1E-15 2.4E-20 113.0 13.8 116 20-148 1-119 (121)
54 TIGR03081 metmalonyl_epim meth 99.7 4E-16 8.7E-21 116.5 11.5 119 153-280 1-128 (128)
55 cd07247 SgaA_N_like N-terminal 99.7 1.7E-15 3.7E-20 110.8 14.5 114 24-146 1-114 (114)
56 cd08351 ChaP_like ChaP, an enz 99.7 2.1E-15 4.5E-20 112.0 15.0 113 20-148 1-122 (123)
57 cd07256 HPCD_C_class_II C-term 99.7 2.4E-15 5.2E-20 116.9 15.7 118 22-148 2-124 (161)
58 cd07237 BphC1-RGP6_C_like C-te 99.7 9E-16 1.9E-20 118.4 12.8 123 150-284 6-134 (154)
59 cd08347 PcpA_C_like C-terminal 99.7 2.7E-15 5.9E-20 115.9 15.4 117 23-148 1-121 (157)
60 cd07265 2_3_CTD_N N-terminal d 99.7 9.5E-16 2.1E-20 113.6 12.3 116 151-282 2-120 (122)
61 cd08343 ED_TypeI_classII_C C-t 99.7 3.1E-15 6.7E-20 112.3 15.2 115 25-148 1-118 (131)
62 cd07256 HPCD_C_class_II C-term 99.7 1E-15 2.2E-20 119.0 13.0 122 151-282 1-124 (161)
63 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 1.1E-15 2.5E-20 113.3 12.5 120 152-280 2-125 (125)
64 cd07239 BphC5-RK37_C_like C-te 99.7 2.7E-15 5.9E-20 114.3 14.5 113 22-148 3-118 (144)
65 cd07240 ED_TypeI_classII_N N-t 99.7 4.1E-15 9E-20 109.1 15.0 111 22-147 1-114 (117)
66 cd08346 PcpA_N_like N-terminal 99.7 2.5E-15 5.5E-20 111.6 14.0 120 23-145 1-126 (126)
67 cd07255 Glo_EDI_BRP_like_12 Th 99.7 6.9E-15 1.5E-19 109.4 16.3 117 22-149 1-121 (125)
68 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.7E-15 5.8E-20 110.3 13.9 117 26-146 1-119 (119)
69 PRK06724 hypothetical protein; 99.7 3.5E-15 7.5E-20 111.2 14.4 113 20-148 4-124 (128)
70 cd07249 MMCE Methylmalonyl-CoA 99.7 3.1E-15 6.8E-20 111.5 13.8 119 24-146 1-128 (128)
71 cd08355 Glo_EDI_BRP_like_14 Th 99.7 6.3E-15 1.4E-19 109.1 15.2 116 26-146 2-121 (122)
72 cd07252 BphC1-RGP6_N_like N-te 99.7 3.3E-15 7.1E-20 110.4 13.1 113 22-148 1-118 (120)
73 cd07264 Glo_EDI_BRP_like_15 Th 99.7 5.3E-15 1.2E-19 109.9 14.3 116 24-146 1-124 (125)
74 cd07247 SgaA_N_like N-terminal 99.7 3.3E-15 7.1E-20 109.2 12.9 114 154-280 1-114 (114)
75 cd07267 THT_Oxygenase_N N-term 99.7 9.1E-15 2E-19 106.8 15.0 110 21-147 1-110 (113)
76 PRK04101 fosfomycin resistance 99.7 3.3E-15 7.3E-20 113.3 13.0 116 152-282 3-120 (139)
77 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 2.9E-15 6.3E-20 109.0 12.1 113 24-144 1-114 (114)
78 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.7E-14 3.8E-19 106.6 16.0 116 27-147 5-122 (122)
79 cd07258 PpCmtC_C C-terminal do 99.6 7.6E-15 1.6E-19 111.3 14.1 113 25-149 1-116 (141)
80 cd08359 Glo_EDI_BRP_like_22 Th 99.6 1E-14 2.3E-19 107.4 14.2 112 26-146 4-119 (119)
81 cd08362 BphC5-RrK37_N_like N-t 99.6 1.2E-14 2.7E-19 107.2 14.5 113 21-148 1-118 (120)
82 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 2.1E-14 4.6E-19 107.2 15.9 116 23-146 1-127 (128)
83 PF00903 Glyoxalase: Glyoxalas 99.6 1.6E-15 3.4E-20 112.9 9.6 120 153-278 1-128 (128)
84 cd07263 Glo_EDI_BRP_like_16 Th 99.6 4.4E-15 9.5E-20 109.1 11.6 117 156-280 1-119 (119)
85 cd08348 BphC2-C3-RGP6_C_like T 99.6 3.3E-14 7.2E-19 107.1 16.7 120 23-150 1-123 (134)
86 COG3185 4-hydroxyphenylpyruvat 99.6 1.5E-14 3.2E-19 120.1 15.2 227 20-256 19-275 (363)
87 cd07239 BphC5-RK37_C_like C-te 99.6 8.2E-15 1.8E-19 111.7 12.8 119 151-284 2-120 (144)
88 cd07249 MMCE Methylmalonyl-CoA 99.6 8.4E-15 1.8E-19 109.2 12.6 118 154-280 1-128 (128)
89 cd08363 FosB FosB, a fosfomyci 99.6 5.5E-15 1.2E-19 110.9 11.6 114 154-282 1-116 (131)
90 cd09014 BphC-JF8_C_like C-term 99.6 8.9E-15 1.9E-19 114.3 12.9 120 152-281 5-127 (166)
91 cd08347 PcpA_C_like C-terminal 99.6 1E-14 2.2E-19 112.7 12.5 116 154-282 2-121 (157)
92 PF12681 Glyoxalase_2: Glyoxal 99.6 1.5E-14 3.3E-19 104.6 12.8 108 29-145 1-108 (108)
93 cd09013 BphC-JF8_N_like N-term 99.6 1.3E-14 2.9E-19 107.2 12.5 111 152-281 5-118 (121)
94 TIGR03211 catechol_2_3 catecho 99.6 2.5E-14 5.5E-19 122.8 15.9 121 17-146 139-264 (303)
95 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 3.9E-14 8.5E-19 103.2 14.7 109 26-147 3-111 (112)
96 cd08345 Fosfomycin_RP Fosfomyc 99.6 2E-14 4.4E-19 104.8 13.0 109 26-147 1-111 (113)
97 cd08343 ED_TypeI_classII_C C-t 99.6 1.7E-14 3.8E-19 108.2 12.7 117 155-284 1-120 (131)
98 cd08355 Glo_EDI_BRP_like_14 Th 99.6 3.1E-14 6.7E-19 105.4 13.6 115 157-280 3-121 (122)
99 cd07244 FosA FosA, a Fosfomyci 99.6 2.7E-14 5.8E-19 105.7 13.0 109 23-148 1-111 (121)
100 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 2.2E-14 4.7E-19 106.4 12.6 117 152-280 2-124 (125)
101 cd09011 Glo_EDI_BRP_like_23 Th 99.6 1.4E-14 3E-19 107.0 11.4 113 153-281 2-119 (120)
102 cd08346 PcpA_N_like N-terminal 99.6 2E-14 4.2E-19 106.8 11.9 119 154-279 2-126 (126)
103 TIGR02295 HpaD 3,4-dihydroxyph 99.6 5.2E-14 1.1E-18 120.4 16.2 122 18-148 131-257 (294)
104 cd07252 BphC1-RGP6_N_like N-te 99.6 2.5E-14 5.4E-19 105.7 12.3 111 153-281 2-117 (120)
105 cd07264 Glo_EDI_BRP_like_15 Th 99.6 1.9E-14 4.2E-19 106.9 11.7 115 154-281 1-125 (125)
106 cd08364 FosX FosX, a fosfomyci 99.6 4.1E-14 8.9E-19 106.2 13.4 117 152-281 3-122 (131)
107 cd07266 HPCD_N_class_II N-term 99.6 2E-14 4.3E-19 106.3 11.5 114 152-282 3-119 (121)
108 cd08349 BLMA_like Bleomycin bi 99.6 8.9E-14 1.9E-18 101.1 14.6 110 27-146 2-112 (112)
109 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 4.9E-14 1.1E-18 105.2 13.3 117 153-281 1-128 (128)
110 cd07255 Glo_EDI_BRP_like_12 Th 99.6 5.2E-14 1.1E-18 104.6 13.4 116 153-283 2-121 (125)
111 cd08361 PpCmtC_N N-terminal do 99.6 2.5E-14 5.4E-19 106.3 11.6 112 152-283 5-121 (124)
112 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 5.1E-14 1.1E-18 104.1 13.2 115 157-280 5-121 (122)
113 cd07235 MRD Mitomycin C resist 99.6 5.2E-14 1.1E-18 104.2 13.2 113 24-145 1-121 (122)
114 cd08354 Glo_EDI_BRP_like_13 Th 99.6 8.1E-14 1.8E-18 103.0 14.0 113 24-146 1-121 (122)
115 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 2.2E-14 4.9E-19 104.3 10.6 113 154-278 1-114 (114)
116 cd08351 ChaP_like ChaP, an enz 99.6 4.2E-14 9.1E-19 104.9 11.9 111 152-281 3-121 (123)
117 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1.2E-13 2.6E-18 102.4 14.2 114 24-145 1-122 (123)
118 cd08344 MhqB_like_N N-terminal 99.6 1.4E-13 3E-18 100.4 13.8 108 22-148 1-110 (112)
119 PRK06724 hypothetical protein; 99.6 4.7E-14 1E-18 105.1 11.3 110 152-281 6-123 (128)
120 COG3324 Predicted enzyme relat 99.6 6.6E-14 1.4E-18 101.6 11.6 120 151-282 7-126 (127)
121 cd08348 BphC2-C3-RGP6_C_like T 99.6 9.6E-14 2.1E-18 104.5 13.1 124 153-285 1-124 (134)
122 cd06587 Glo_EDI_BRP_like This 99.6 1.5E-13 3.3E-18 99.1 13.7 112 26-144 1-112 (112)
123 cd09012 Glo_EDI_BRP_like_24 Th 99.6 8.6E-14 1.9E-18 103.4 12.5 113 24-146 1-123 (124)
124 cd08357 Glo_EDI_BRP_like_18 Th 99.6 1E-13 2.2E-18 103.0 12.8 113 26-146 2-124 (125)
125 cd08350 BLMT_like BLMT, a bleo 99.6 1.8E-13 3.9E-18 101.0 13.9 108 26-147 5-119 (120)
126 cd07254 Glo_EDI_BRP_like_20 Th 99.6 2.1E-13 4.6E-18 100.6 14.1 112 25-148 3-118 (120)
127 cd07240 ED_TypeI_classII_N N-t 99.6 1.1E-13 2.4E-18 101.5 12.3 111 152-281 1-114 (117)
128 cd08359 Glo_EDI_BRP_like_22 Th 99.5 1.1E-13 2.5E-18 101.8 12.0 112 155-280 3-119 (119)
129 cd07261 Glo_EDI_BRP_like_11 Th 99.5 2.4E-13 5.2E-18 99.3 13.5 108 27-145 2-113 (114)
130 cd07238 Glo_EDI_BRP_like_5 Thi 99.5 1.6E-13 3.4E-18 100.0 12.2 108 157-281 4-111 (112)
131 cd07267 THT_Oxygenase_N N-term 99.5 1.7E-13 3.6E-18 100.1 12.2 108 152-280 2-109 (113)
132 PF12681 Glyoxalase_2: Glyoxal 99.5 1.4E-13 3.1E-18 99.4 11.5 108 159-279 1-108 (108)
133 cd08362 BphC5-RrK37_N_like N-t 99.5 1.5E-13 3.3E-18 101.3 11.8 113 152-282 2-118 (120)
134 TIGR03213 23dbph12diox 2,3-dih 99.5 3.1E-13 6.7E-18 115.1 14.9 119 20-147 139-263 (286)
135 cd08345 Fosfomycin_RP Fosfomyc 99.5 1.2E-13 2.6E-18 100.7 10.7 108 156-280 1-110 (113)
136 cd08349 BLMA_like Bleomycin bi 99.5 2.7E-13 5.9E-18 98.6 12.1 109 158-280 3-112 (112)
137 PF13669 Glyoxalase_4: Glyoxal 99.5 2.2E-13 4.8E-18 98.7 11.3 95 25-121 1-97 (109)
138 cd08354 Glo_EDI_BRP_like_13 Th 99.5 2.8E-13 6.2E-18 100.1 12.1 114 154-281 1-122 (122)
139 COG3324 Predicted enzyme relat 99.5 1.3E-12 2.7E-17 94.9 14.8 120 19-147 5-125 (127)
140 KOG2944 Glyoxalase [Carbohydra 99.5 6.4E-14 1.4E-18 102.9 8.2 74 203-282 87-169 (170)
141 cd07262 Glo_EDI_BRP_like_19 Th 99.5 3.5E-13 7.6E-18 99.9 12.2 117 154-279 1-122 (123)
142 cd07244 FosA FosA, a Fosfomyci 99.5 3.3E-13 7.1E-18 99.8 11.6 108 153-281 1-110 (121)
143 cd08356 Glo_EDI_BRP_like_17 Th 99.5 6.3E-13 1.4E-17 97.0 12.8 105 26-146 4-113 (113)
144 cd07261 Glo_EDI_BRP_like_11 Th 99.5 4.7E-13 1E-17 97.8 11.9 108 157-279 2-113 (114)
145 cd07254 Glo_EDI_BRP_like_20 Th 99.5 8.2E-13 1.8E-17 97.4 13.1 111 155-281 3-117 (120)
146 cd09012 Glo_EDI_BRP_like_24 Th 99.5 4.4E-13 9.5E-18 99.6 11.2 112 154-279 1-122 (124)
147 cd08350 BLMT_like BLMT, a bleo 99.5 6.1E-13 1.3E-17 98.2 11.7 108 156-281 5-119 (120)
148 KOG2943 Predicted glyoxalase [ 99.5 1.6E-13 3.4E-18 107.6 8.7 127 151-290 15-152 (299)
149 cd07235 MRD Mitomycin C resist 99.5 1.1E-12 2.3E-17 97.1 11.9 113 154-279 1-121 (122)
150 cd08357 Glo_EDI_BRP_like_18 Th 99.5 6.8E-13 1.5E-17 98.5 10.7 113 156-280 2-124 (125)
151 cd08344 MhqB_like_N N-terminal 99.5 1.4E-12 3E-17 95.1 11.9 105 153-280 2-108 (112)
152 cd06587 Glo_EDI_BRP_like This 99.5 9.8E-13 2.1E-17 94.8 10.8 112 156-278 1-112 (112)
153 PF13669 Glyoxalase_4: Glyoxal 99.4 5.1E-13 1.1E-17 96.8 8.8 95 155-255 1-97 (109)
154 cd07251 Glo_EDI_BRP_like_10 Th 99.4 3.7E-12 8.1E-17 93.9 13.6 110 27-146 2-120 (121)
155 cd08356 Glo_EDI_BRP_like_17 Th 99.4 2.3E-12 5E-17 94.0 10.9 104 157-280 5-113 (113)
156 KOG2944 Glyoxalase [Carbohydra 99.4 1.3E-12 2.8E-17 96.1 9.0 124 21-147 20-168 (170)
157 cd07251 Glo_EDI_BRP_like_10 Th 99.4 7.6E-12 1.6E-16 92.2 10.0 110 157-280 2-120 (121)
158 cd07250 HPPD_C_like C-terminal 99.3 2.9E-11 6.3E-16 96.4 11.4 100 21-122 1-113 (191)
159 COG3565 Predicted dioxygenase 99.2 1.4E-10 3.1E-15 80.5 9.8 118 22-147 3-129 (138)
160 COG2514 Predicted ring-cleavag 99.2 3.1E-10 6.6E-15 91.8 12.0 122 149-283 6-128 (265)
161 cd07250 HPPD_C_like C-terminal 99.2 1.3E-10 2.9E-15 92.6 9.2 99 152-256 2-113 (191)
162 TIGR01263 4HPPD 4-hydroxypheny 99.2 3.2E-10 6.9E-15 99.3 11.1 104 17-122 152-268 (353)
163 PF14506 CppA_N: CppA N-termin 99.1 2.9E-09 6.3E-14 75.1 13.2 113 25-148 2-115 (125)
164 cd06588 PhnB_like Escherichia 99.1 8.3E-09 1.8E-13 76.9 15.0 111 27-144 3-127 (128)
165 COG2764 PhnB Uncharacterized p 99.0 3.5E-08 7.6E-13 73.0 15.7 117 27-148 4-132 (136)
166 COG0346 GloA Lactoylglutathion 99.0 1.7E-09 3.8E-14 80.3 8.4 122 22-146 1-138 (138)
167 COG3607 Predicted lactoylgluta 99.0 5E-09 1.1E-13 74.3 9.9 117 22-148 2-128 (133)
168 PF13468 Glyoxalase_3: Glyoxal 99.0 7.1E-09 1.5E-13 81.7 11.7 147 24-175 1-175 (175)
169 COG3607 Predicted lactoylgluta 99.0 8E-09 1.7E-13 73.3 9.9 118 153-280 3-126 (133)
170 COG2764 PhnB Uncharacterized p 99.0 1.7E-08 3.7E-13 74.7 11.9 116 158-282 5-132 (136)
171 cd06588 PhnB_like Escherichia 98.9 1.7E-08 3.6E-13 75.3 11.5 114 158-279 4-128 (128)
172 COG3565 Predicted dioxygenase 98.9 1.8E-08 3.8E-13 70.2 9.0 117 153-281 4-129 (138)
173 PLN02875 4-hydroxyphenylpyruva 98.9 1.8E-08 3.9E-13 88.0 10.8 100 20-121 177-295 (398)
174 COG0346 GloA Lactoylglutathion 98.8 1.5E-08 3.2E-13 75.2 8.3 121 153-280 2-138 (138)
175 PF14696 Glyoxalase_5: Hydroxy 98.7 8.5E-08 1.8E-12 71.4 9.1 123 19-150 5-129 (139)
176 PRK01037 trmD tRNA (guanine-N( 98.7 1.7E-07 3.6E-12 79.3 10.7 107 21-147 245-354 (357)
177 PRK01037 trmD tRNA (guanine-N( 98.5 1.2E-06 2.6E-11 74.2 10.4 107 152-279 246-352 (357)
178 PRK10148 hypothetical protein; 98.4 6.4E-05 1.4E-09 57.2 16.3 117 27-151 5-145 (147)
179 COG3185 4-hydroxyphenylpyruvat 98.3 1.5E-06 3.3E-11 73.0 7.0 101 20-122 164-275 (363)
180 KOG0638 4-hydroxyphenylpyruvat 98.2 2.9E-06 6.3E-11 70.0 5.9 129 152-286 16-153 (381)
181 PRK10148 hypothetical protein; 98.2 5.9E-05 1.3E-09 57.4 12.7 116 157-281 5-141 (147)
182 PF14506 CppA_N: CppA N-termin 98.2 5.4E-05 1.2E-09 53.8 11.2 114 155-284 2-117 (125)
183 PF14696 Glyoxalase_5: Hydroxy 98.0 9.9E-05 2.1E-09 55.1 10.8 117 153-284 9-129 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.7 0.00016 3.5E-09 56.9 7.0 87 154-250 1-101 (175)
185 PF06983 3-dmu-9_3-mt: 3-demet 96.9 0.026 5.7E-07 41.0 11.1 99 162-279 11-116 (116)
186 PF14507 CppA_C: CppA C-termin 96.9 0.0023 5E-08 44.6 4.7 93 154-279 6-101 (101)
187 PF15067 FAM124: FAM124 family 96.6 0.021 4.5E-07 45.9 9.2 104 23-144 128-235 (236)
188 PF06983 3-dmu-9_3-mt: 3-demet 96.5 0.19 4.1E-06 36.5 13.6 96 32-145 11-116 (116)
189 PF14507 CppA_C: CppA C-termin 94.9 0.15 3.2E-06 35.6 6.5 90 22-143 4-99 (101)
190 PF15067 FAM124: FAM124 family 94.1 0.49 1.1E-05 38.2 8.6 105 152-277 127-234 (236)
191 COG3865 Uncharacterized protei 88.1 9.2 0.0002 28.6 9.6 43 226-280 81-123 (151)
192 PF06185 YecM: YecM protein; 81.3 23 0.0005 27.9 9.2 86 21-109 32-123 (185)
193 PRK11700 hypothetical protein; 73.1 44 0.00095 26.3 9.1 79 21-102 37-120 (187)
194 cd07268 Glo_EDI_BRP_like_4 Thi 68.4 48 0.001 25.0 7.7 76 24-102 2-82 (149)
195 PF13670 PepSY_2: Peptidase pr 67.4 22 0.00047 23.8 5.4 46 102-149 30-75 (83)
196 PTZ00039 40S ribosomal protein 66.9 29 0.00064 25.0 6.1 46 228-274 26-71 (115)
197 COG0051 RpsJ Ribosomal protein 65.4 15 0.00032 25.9 4.3 48 226-274 11-58 (104)
198 PHA02754 hypothetical protein; 64.3 18 0.00039 22.3 3.9 50 231-282 14-63 (67)
199 COG4747 ACT domain-containing 62.8 38 0.00082 24.5 5.9 84 22-119 40-135 (142)
200 PF13670 PepSY_2: Peptidase pr 61.9 18 0.00038 24.2 4.1 47 232-284 30-76 (83)
201 cd04882 ACT_Bt0572_2 C-termina 56.1 28 0.00061 21.4 4.2 26 92-117 39-64 (65)
202 cd04895 ACT_ACR_1 ACT domain-c 51.7 57 0.0012 21.3 5.0 51 227-277 5-56 (72)
203 PF07063 DUF1338: Domain of un 48.9 42 0.0009 28.9 5.2 42 25-67 36-82 (302)
204 TIGR01046 S10_Arc_S20_Euk ribo 47.3 44 0.00095 23.4 4.2 46 228-274 10-55 (99)
205 cd04883 ACT_AcuB C-terminal AC 46.2 48 0.001 21.0 4.2 29 222-254 41-71 (72)
206 COG3865 Uncharacterized protei 44.3 1.4E+02 0.003 22.6 11.5 34 103-147 91-124 (151)
207 COG4747 ACT domain-containing 42.6 34 0.00074 24.7 3.0 81 95-180 44-134 (142)
208 cd04897 ACT_ACR_3 ACT domain-c 41.8 1E+02 0.0022 20.3 5.1 52 226-277 4-56 (75)
209 PRK12271 rps10p 30S ribosomal 40.0 67 0.0015 22.6 4.3 45 229-274 12-56 (102)
210 CHL00135 rps10 ribosomal prote 38.5 62 0.0013 22.8 3.9 47 227-274 15-61 (101)
211 PF02208 Sorb: Sorbin homologo 37.1 18 0.00039 21.1 0.8 25 152-176 10-34 (47)
212 cd04906 ACT_ThrD-I_1 First of 34.1 84 0.0018 21.0 4.0 26 93-118 41-70 (85)
213 PF09066 B2-adapt-app_C: Beta2 33.7 1.7E+02 0.0037 20.6 7.1 69 100-172 35-107 (114)
214 PF08445 FR47: FR47-like prote 33.6 1.1E+02 0.0023 20.5 4.4 24 28-52 59-82 (86)
215 KOG4657 Uncharacterized conser 32.7 1.1E+02 0.0023 25.0 4.7 36 32-70 145-180 (246)
216 COG1791 Uncharacterized conser 32.1 99 0.0021 24.0 4.3 81 101-182 78-163 (181)
217 PRK00596 rpsJ 30S ribosomal pr 31.6 93 0.002 21.9 3.9 45 229-274 14-58 (102)
218 cd04900 ACT_UUR-like_1 ACT dom 30.2 1.5E+02 0.0033 18.9 5.3 51 226-277 4-57 (73)
219 PF06185 YecM: YecM protein; 29.5 2.9E+02 0.0062 21.9 7.6 78 153-232 34-115 (185)
220 TIGR01049 rpsJ_bact ribosomal 29.0 94 0.002 21.7 3.6 46 228-274 10-55 (99)
221 cd04908 ACT_Bt0572_1 N-termina 28.2 1.2E+02 0.0026 18.8 3.8 23 95-117 42-64 (66)
222 cd07268 Glo_EDI_BRP_like_4 Thi 27.3 2.8E+02 0.0061 21.1 7.9 78 154-232 2-82 (149)
223 PRK11700 hypothetical protein; 26.9 3.2E+02 0.007 21.6 9.7 77 152-232 38-120 (187)
224 cd04927 ACT_ACR-like_2 Second 26.0 1.9E+02 0.0042 18.8 6.1 48 226-274 3-53 (76)
225 PF11080 DUF2622: Protein of u 24.7 1.2E+02 0.0026 21.1 3.3 30 101-145 21-50 (96)
226 PRK14707 hypothetical protein; 23.7 2.4E+02 0.0052 31.4 6.5 51 228-278 2349-2403(2710)
227 PF07494 Reg_prop: Two compone 22.3 1.1E+02 0.0025 14.8 2.6 14 130-143 7-20 (24)
228 cd04885 ACT_ThrD-I Tandem C-te 21.9 2.1E+02 0.0046 17.9 4.1 30 222-252 38-67 (68)
229 PF07063 DUF1338: Domain of un 21.1 2.1E+02 0.0045 24.7 4.8 30 219-252 181-216 (302)
230 PTZ00330 acetyltransferase; Pr 21.0 1.4E+02 0.003 21.8 3.5 26 23-51 115-140 (147)
231 cd04925 ACT_ACR_2 ACT domain-c 20.4 2.5E+02 0.0054 18.0 5.0 47 227-275 4-54 (74)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=6.5e-45 Score=308.97 Aligned_cols=284 Identities=77% Similarity=1.268 Sum_probs=233.0
Q ss_pred CcCCCCCCchhhccCCCCCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeec
Q 022840 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYN 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 81 (291)
|+||.+++.+.+.+|++|++.++.|++|.|+|++++++||+++|||++..+...++..+...++..++....+.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 67888999999999999999999999999999999999999999999877655444455567776654445566777654
Q ss_pred CCCCcccCCCCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCCCCCceEEEeee
Q 022840 82 YGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~~~~~~~v~l~v 161 (291)
.+......+.+..|++|.|+|+++++++|+++|+++...+...+++...++||+||+|+.|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 43333345568899999999999999999999999888877776655445789999999999999999999999999999
Q ss_pred CCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHHHHHHH
Q 022840 162 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~ 241 (291)
+|++++.+||+++|||++......++..+.+.++..++......+++..+.+...+..+++++|++|.|+|+++.++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999987654444445666666543332344566655444333445688999999999999999999
Q ss_pred HHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhhhhh
Q 022840 242 LVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~~ 289 (291)
+++|+++..+|...|+.+++.++|+||+|+.++|++.+++.|+|+
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 999999999988887755688999999999999999999999885
No 2
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=1.3e-31 Score=230.00 Aligned_cols=237 Identities=21% Similarity=0.217 Sum_probs=162.8
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++||+|.|+|++++++||+++|||++..+... ..++..........+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 68999999999999999999999999998754321 23333211111223333221 124789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC---------------------CCCceE
Q 022840 101 E---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~---------------------~~~~~~ 156 (291)
+ |+++++++|+++|+++...+.....+....+||+||+|+.|||+..... +.+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7899999999999997655432211222347899999999999975421 234899
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccce-eeeeeccccCCceeEEEEeeecCceeeccCcc-eeEEEEEecchH
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKC-ALAMLGYAEEDQTTVLELAYSYGVTEYTKGNA-YAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g-~~hi~~~v~d~~ 234 (291)
+.|.|+|++++.+||+++|||++..+...+.+.. ...|+..+.. ...+.+.. ..+.| ++|++|.|+|++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVG-------DPEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--Ccccceec-------CCCCCceEEEEEEcCCHH
Confidence 9999999999999999999999876543333221 2334443221 22222211 01234 899999999755
Q ss_pred HHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
++.+.+ ++|+++|+++..+|..+....++++||+||+|+.|||+.
T Consensus 220 ~v~~~~-~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 220 DVLKAA-DVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHHHH-HHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 433322 444999999988887655434679999999999999973
No 3
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-32 Score=211.31 Aligned_cols=260 Identities=46% Similarity=0.799 Sum_probs=218.0
Q ss_pred hhhccCCCCCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCC-----------CCeeEEEeccCCCCcceEEEEe
Q 022840 11 AELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELT 79 (291)
Q Consensus 11 ~~~~~~~~~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~~~ 79 (291)
..+..|.+.+..+.-|+++.|.|..+++.||+++|||+++..+++++ +.|.-.++++|++..+|++++.
T Consensus 5 ~d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELT 84 (299)
T KOG2943|consen 5 LDLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELT 84 (299)
T ss_pred hhhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEE
Confidence 36778888899999999999999999999999999999998888877 6788889999999999999999
Q ss_pred ecCCCCcccCCCCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCCCCCceEEEe
Q 022840 80 YNYGVTSYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTPEPLCQVML 159 (291)
Q Consensus 80 ~~~~~~~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~~~~~~~v~l 159 (291)
++-+...+..|.+..||.+.++|+-..++.+...|.+ ..|.. .+++.||||..++|.+..+.+.++..|++
T Consensus 85 YNYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g~~-~~~v~dPdGykF~l~~~~p~s~pv~~V~l 155 (299)
T KOG2943|consen 85 YNYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK--------GSGCG-IAFVKDPDGYKFYLIDRGPQSDPVLQVML 155 (299)
T ss_pred eccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccceE-EEEEECCCCcEEEEeccCCCCCCeEEEEE
Confidence 9999999999999999999999987777776665542 12223 47799999999999998899999999999
Q ss_pred eeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHHHHH
Q 022840 160 RVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEV 239 (291)
Q Consensus 160 ~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~ 239 (291)
+|.|+++++.||.+.||+++.+. +.+++...++++++ ...|+|+.+.+...+..+.|.-.+++..+++..+.+.
T Consensus 156 ~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~ 229 (299)
T KOG2943|consen 156 NVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEA 229 (299)
T ss_pred EehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHH
Confidence 99999999999999999998764 22356667777654 5889999988887776667777777777888999888
Q ss_pred HHHHHHHhCCEeecCCcccCCCCc---eEEEEECCCCceEEEecchhhhhhhh
Q 022840 240 VNLVTQELGGKITRQPGPIPGLNT---KITSFVDPDGWKTVLVDNEDFLKELQ 289 (291)
Q Consensus 240 l~~~~~~~G~~~~~~p~~~~~~~~---~~~~~~DP~G~~iel~~~~~~~~~~~ 289 (291)
+ +..+.++..+....++.++ .++-+-||||+.|+|+..+++++.++
T Consensus 230 i----K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 230 I----KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred H----HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 8 8887777776655443332 45668999999999999999998764
No 4
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=6.9e-31 Score=224.59 Aligned_cols=237 Identities=22% Similarity=0.258 Sum_probs=164.7
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
++++++||.|.|+|++++++||+++|||++..+.. . ..++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~--~----~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK--E----YIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC--C----eEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 57899999999999999999999999999865421 1 33443211111222333221 22368899999
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC---------------CCCCceEEEeee
Q 022840 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~---------------~~~~~~~v~l~v 161 (291)
|+ |+++++++|+++|+++...+. +++. ..+||+||+||.|||+.... .+.++.|+.|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQP-EALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCCc-eEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 789999999999998765432 2222 35899999999999987331 235689999999
Q ss_pred CCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHHHHHHH
Q 022840 162 GDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~~l~ 241 (291)
+|++++.+||+++|||++..+.....+.....++..... .+.+.+.. ..+++++|++|.|+|.+++. .+.
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~-~~~ 214 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTN-------GNGPRLHHIAYWVHDPLNII-KAC 214 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeec-------CCCCceeeEEEEcCCHHHHH-HHH
Confidence 999999999999999998765433333333444443221 22333321 12468999999999954432 233
Q ss_pred HHHHHhCCE--eecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 242 LVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 242 ~~~~~~G~~--~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
++|+++|++ +...|..+...+.+++|++||+|+.|||+...
T Consensus 215 ~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 215 DILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 444999998 66666655443457899999999999998744
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=2.4e-30 Score=220.18 Aligned_cols=232 Identities=18% Similarity=0.236 Sum_probs=162.9
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
|.++.||+|.|+|++++++||+++|||++..... ++ ..|+..+.. ...+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSR--AHRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCC--ceEEEEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999998754311 11 335555332 2233333221 12577999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcc---CCCCceEEEEEECCCCcEEEEEEcCC--------C----------CCCceE
Q 022840 101 ED---VYKMVENIRAKGGNVTREPGP---LKGMTTHFAFVKDPDGYIFELIQRGP--------T----------PEPLCQ 156 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~---~~~g~~~~~~~~DP~G~~iel~~~~~--------~----------~~~~~~ 156 (291)
+| ++++.++|+++|+++...+.. ..++ ...++|.||+||.+||+.... . +.++.|
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~-~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H 145 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGV-LGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGH 145 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccc-eEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccE
Confidence 98 889999999999997765432 1222 335889999999999986331 1 236899
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccC--ccc-ceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecch
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDS--PEL-KCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~ 233 (291)
|.|.|+|++++.+||+++|||++..+... +++ .+...++...+. +..+.+... ....+++|++|.|+|+
T Consensus 146 v~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hiaf~v~d~ 217 (286)
T TIGR03213 146 IVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLMLEVDTL 217 (286)
T ss_pred EEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEEEEcCCH
Confidence 99999999999999999999998765322 111 123455554332 333433221 1246889999999986
Q ss_pred HH---HHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 234 YK---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
++ ..++| +++|+ ....|.+++..+.+++|++||+|+.|||..
T Consensus 218 ~~v~~~~~~l----~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 218 DDVGLALDRV----DADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred HHHHHHHHHH----HHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 66 45555 99999 555666665555778999999999999975
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.90 E-value=9.6e-22 Score=171.62 Aligned_cols=223 Identities=22% Similarity=0.321 Sum_probs=152.7
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc------ccCCCCceE
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS------YDIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~------~~~~~g~~~ 95 (291)
++++||.+.|+|++++.+||++.|||+.........+ .....+..+ ...+++..+..... ..+|.|++|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~-~~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHRE-KASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCc-eeEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 4789999999999999999999999998876322222 223334432 24455554332211 126789999
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC---------------------C----
Q 022840 96 LAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP---------------------T---- 150 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~---------------------~---- 150 (291)
|||.|+|++++++++.++|+++..+|.....|...+.-+..++|..+-|++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999877665431122222335666666666665321 0
Q ss_pred CCCceEEEeeeC--CccccHHHHHHhcCCeeeeeccCccc--ceeeeeeccccCCceeEEEEeeecC---ce------ee
Q 022840 151 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPEL--KCALAMLGYAEEDQTTVLELAYSYG---VT------EY 217 (291)
Q Consensus 151 ~~~~~~v~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~---~~------~~ 217 (291)
-..++|++++|+ |++++..||+++|||++..+...... ......+. ..++...|+|..+.. .. ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~--~~~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMA--SPDGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEE--CCCCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 123899999999 99999999999999998765442211 11111222 122356777766321 11 12
Q ss_pred ccCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCC
Q 022840 218 TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 218 ~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p 255 (291)
..+.|++||||.|+|+++++++| +++|++++.+|
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 24789999999999999999999 99999999877
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=156.94 Aligned_cols=195 Identities=20% Similarity=0.297 Sum_probs=142.7
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCC-CCcccCCCCceEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG-VTSYDIGTGFGHLAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~g~~~i~~ 98 (291)
.-+.+..++|.|+|++.+..||+++||+++..+... .+.++.+.. . .+.+.+.+. ........|+.|++|
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~-~--LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT-P--LLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE-E--EEEEEeCCCCCCCCccccceeeeee
Confidence 457889999999999999999999999999876432 455665432 2 344444322 223345569999999
Q ss_pred EECC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC-------------------------
Q 022840 99 ATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT------------------------- 150 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~------------------------- 150 (291)
.+++ +..++.++...|+.+.. ... ..-...+||.||+||.||++..++.
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~G-a~D--H~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~ 154 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLVG-ASD--HLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEE 154 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCcccc-cCc--chhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhh
Confidence 9985 66778888999988752 121 2223358999999999999987531
Q ss_pred -----------CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceee-c
Q 022840 151 -----------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEY-T 218 (291)
Q Consensus 151 -----------~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~ 218 (291)
...|.||.|.|.|++++.+||.++|||+++.+.+ ...|++.++.+++.....+...+.... .
T Consensus 155 ~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~ 228 (265)
T COG2514 155 ATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNA 228 (265)
T ss_pred ccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCC
Confidence 1338999999999999999999999999887622 457888888888887776665444322 2
Q ss_pred cCcceeEEEEEecc
Q 022840 219 KGNAYAQVAISTDD 232 (291)
Q Consensus 219 ~~~g~~hi~~~v~d 232 (291)
...|+..+.+.+++
T Consensus 229 ~~~GLa~~~i~~~~ 242 (265)
T COG2514 229 NASGLAWLEIHTPD 242 (265)
T ss_pred CCCCcceEEEEcCC
Confidence 33577788888876
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=9.7e-20 Score=140.12 Aligned_cols=139 Identities=61% Similarity=1.036 Sum_probs=104.9
Q ss_pred hhccCCCCCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCC
Q 022840 12 ELLEWPKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGT 91 (291)
Q Consensus 12 ~~~~~~~~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (291)
++.+.++...++++||.|.|+|++++.+||+++|||++......+......++++.+.......+++...........+.
T Consensus 6 ~~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (150)
T TIGR00068 6 DLVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGN 85 (150)
T ss_pred ccccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCC
Confidence 45566778899999999999999999999999999998765544444444566665433334455554433222333455
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC
Q 022840 92 GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 92 g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~ 150 (291)
+..|++|.|+|+++++++|.++|+++..++...+++...++||+||+|+.|||++....
T Consensus 86 g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 78999999999999999999999998777765555545457899999999999987643
No 9
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.85 E-value=1.4e-19 Score=156.75 Aligned_cols=224 Identities=17% Similarity=0.254 Sum_probs=158.1
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCC--CeeEEEeccCCCCcceEEEEeecCC--C---------------
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE--KYSNAFLGFGPEQSYFVVELTYNYG--V--------------- 84 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~--~--------------- 84 (291)
++||.++|.|..++..||+..|||+.+.......+ ......++.+ ...+++.-..... .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g--~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG--DLVFLFTAPYSPKIGAGDDDPASTAPHPSFS 78 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC--CEEEEEeCCCCCccccccccccccccccccC
Confidence 58999999999999999999999998876543222 2334445433 3333332221110 0
Q ss_pred Cc------ccCCCCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCC----CceEEEEEECCCCcEEEEEEcCC-----
Q 022840 85 TS------YDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKG----MTTHFAFVKDPDGYIFELIQRGP----- 149 (291)
Q Consensus 85 ~~------~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~----g~~~~~~~~DP~G~~iel~~~~~----- 149 (291)
.. ..+|++++.|+|+|+|++++++++.++|++...+|..... |...+.-++.++|..+-|++...
T Consensus 79 ~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~~~ 158 (398)
T PLN02875 79 SDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGAK 158 (398)
T ss_pred cHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCCCc
Confidence 00 1377899999999999999999999999997777665432 22333447888888888887421
Q ss_pred ----------C--------CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCccc-----ceeeeeeccccCCceeEE
Q 022840 150 ----------T--------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL-----KCALAMLGYAEEDQTTVL 206 (291)
Q Consensus 150 ----------~--------~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l 206 (291)
. -.+|+|+++.|.+++.+..||+++|||+.....+..+. +.....+. .++....+
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~--sp~g~v~i 236 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLA--SNNEMVLL 236 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEE--cCCCcEEE
Confidence 0 12589999999999999999999999998765443221 12344444 33345778
Q ss_pred EEeeecCc----e------eeccCcceeEEEEEecchHHHHHHHHHHHHHh----CCEeecCC
Q 022840 207 ELAYSYGV----T------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 255 (291)
Q Consensus 207 ~l~~~~~~----~------~~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~----G~~~~~~p 255 (291)
+|.++... . ....|+|++||||.|+||.+++++| +++ |++++..|
T Consensus 237 pLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 237 PLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 88775321 1 1335789999999999999999999 998 99999865
No 10
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=4.8e-19 Score=139.32 Aligned_cols=147 Identities=34% Similarity=0.579 Sum_probs=108.6
Q ss_pred CCcCCCCCCchhhc--cCC--CCCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCC-----
Q 022840 1 MAEASPAAANAELL--EWP--KKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ----- 71 (291)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~--~~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~----- 71 (291)
||.||+-++++.+- .++ ...-.++.|++|.|.|++++++||+++|||++..+...++.+++.++++.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~ 80 (185)
T PLN03042 1 MASASKESAANNPGLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTD 80 (185)
T ss_pred CCCCCcCCcccCcccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcc
Confidence 77788777666432 222 334689999999999999999999999999998887766666778887643211
Q ss_pred ----------cceEEEEeecCCCCc------cc----CCCCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEE
Q 022840 72 ----------SYFVVELTYNYGVTS------YD----IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHF 131 (291)
Q Consensus 72 ----------~~~~l~~~~~~~~~~------~~----~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~ 131 (291)
....|+|.++.+... +. .+.|+.||+|.|+|+++++++|+++|+.+...|....+ ..+
T Consensus 81 ~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~ 158 (185)
T PLN03042 81 PPERTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGL 158 (185)
T ss_pred hhhcccccccCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeE
Confidence 134677876443221 22 22489999999999999999999999998766543222 234
Q ss_pred EEEECCCCcEEEEEEcCC
Q 022840 132 AFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 132 ~~~~DP~G~~iel~~~~~ 149 (291)
+||+||+|+.|||++...
T Consensus 159 ~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 159 AFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred EEEECCCCCEEEEEECCC
Confidence 778999999999998763
No 11
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=7.1e-20 Score=146.74 Aligned_cols=129 Identities=33% Similarity=0.590 Sum_probs=105.3
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCC---------------ceeEEEEeeecCcee
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED---------------QTTVLELAYSYGVTE 216 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~~ 216 (291)
..+.|++|+|.|++++++||+++|||++..+...+++++.++|+++++.. ....|||+++++...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 35899999999999999999999999998888777777899998753311 135899988776431
Q ss_pred ------eccC----cceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhh
Q 022840 217 ------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 217 ------~~~~----~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~ 286 (291)
|..+ .|++||+|.|+|+++++++| +++|+++...|....+ .+++|++||||++|||+|.....+
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~~ 227 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIGT 227 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccccc
Confidence 3333 48999999999999999999 9999999987765333 568899999999999999877654
No 12
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=1.3e-19 Score=139.38 Aligned_cols=137 Identities=45% Similarity=0.789 Sum_probs=104.9
Q ss_pred CCCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEE
Q 022840 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 150 ~~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 229 (291)
...++.|+.+.|+|++++.+||+++|||++..+...+..++...+++.+.......+++....+..+...+.++.|++|.
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~ 93 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIG 93 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEe
Confidence 45679999999999999999999999999876544344344556666543333455665443332222334588999999
Q ss_pred ecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhhhhhc
Q 022840 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~~~ 290 (291)
|+|++++.+++ .++|+++..+|...+....+.+||+||+|+.|||++..+..+.||.
T Consensus 94 v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~ 150 (150)
T TIGR00068 94 VDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLGN 150 (150)
T ss_pred cCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhccC
Confidence 99999999999 9999999887765555445788999999999999999999999883
No 13
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=4.4e-19 Score=132.94 Aligned_cols=123 Identities=54% Similarity=0.971 Sum_probs=94.0
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHHHH
Q 022840 28 VYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMV 107 (291)
Q Consensus 28 ~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~ 107 (291)
.|.|+|++++++||+++|||++......+...+..+++..++......+++....+..+...+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987765555555667777665433344556654333333345567899999999999999
Q ss_pred HHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC
Q 022840 108 ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~ 150 (291)
++|+++|+++..++...+++...++||+||||+.|||++....
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 9999999998776666666555557889999999999997753
No 14
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=8.1e-19 Score=140.68 Aligned_cols=128 Identities=34% Similarity=0.657 Sum_probs=102.6
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCC---------------cceEEEEeecCCC
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ---------------SYFVVELTYNYGV 84 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~~~~~~~~ 84 (291)
.-..+.|+.|.|+|++++++||+++|||++..+.+.++.++..+|+++++.. ....|||.++.+.
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 4578999999999999999999999999999988888888888888653311 1346888876543
Q ss_pred C------cccCC----CCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC
Q 022840 85 T------SYDIG----TGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 85 ~------~~~~~----~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~ 149 (291)
. .+..+ .|+.||||.|+|+++++++|+++|+++...|....+ ..++|++||||+.|||++...
T Consensus 152 e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 152 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 3 13333 489999999999999999999999998877665433 234789999999999998764
No 15
>PRK10291 glyoxalase I; Provisional
Probab=99.80 E-value=6.9e-19 Score=131.88 Aligned_cols=124 Identities=47% Similarity=0.830 Sum_probs=93.5
Q ss_pred EeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHHH
Q 022840 158 MLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~ 237 (291)
+|.|.|++++.+||+++|||++......+...+.+.++..++......+++..+.+..++..+.+++|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987655444445667777654433345566655443333334568899999999999999
Q ss_pred HHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhh
Q 022840 238 EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 238 ~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~ 285 (291)
++| +++|+++...+...++...+.+||+||||+.|||++..+..
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 999 99999998776555553345688999999999999976543
No 16
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=5.5e-18 Score=129.13 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=88.4
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCC-----------CCeeEEEeccCCCCcceEEEEeecCCCC----
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTYNYGVT---- 85 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~~~~~~~~~---- 85 (291)
+++++||+|.|+|++++.+||++ |||++..+....+ ......++... .....+++.....+.
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCc
Confidence 57899999999999999999998 9998765433211 12334444432 223456665422111
Q ss_pred ---cccCCCCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 86 ---SYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ---~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
....+.|+.||||.|+|+++++++|+++|+++..++....++.+ .+||+||+|+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r-~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYR-LCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeE-EEEEECCCCCEEEeeec
Confidence 11234578899999999999999999999998876655555544 48899999999999984
No 17
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=5.2e-18 Score=127.03 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=84.3
Q ss_pred CCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCC-CCeeEEEeccCCCCcceEEEEeecCC---CCcccCCCCce
Q 022840 19 KDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-EKYSNAFLGFGPEQSYFVVELTYNYG---VTSYDIGTGFG 94 (291)
Q Consensus 19 ~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~---~~~~~~~~g~~ 94 (291)
+.+.+++||+|.|+|++++.+||+++|||++......+. ..+.. .+..+. ...+++..... ........|+.
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~ 77 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLR 77 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCcee
Confidence 467889999999999999999999999999864322111 11111 122221 23445443211 11112335788
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 95 HLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
|++|.|+|+++++++|+++|+++...+....+|.. ++||+||+|+.|||++
T Consensus 78 hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 78 HLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKR-FTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCE-EEEEECCCCCEEEEEe
Confidence 99999999999999999999997644333334444 5889999999999987
No 18
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.79 E-value=7e-19 Score=142.67 Aligned_cols=229 Identities=21% Similarity=0.374 Sum_probs=161.2
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCC--CeeEEEeccCCCCcceEEEEeecCCCC-----cccCCCC
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE--KYSNAFLGFGPEQSYFVVELTYNYGVT-----SYDIGTG 92 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~~~-----~~~~~~g 92 (291)
.+.+++||.+.|.|...+..||+..|||++....+.+.+ .+....++ .+...+++.....+... -..+|.|
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr--~g~~vFv~~s~~~p~~~~~G~~l~~Hgdg 91 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALR--QGKIVFVFNSAYNPDNSEYGDHLVKHGDG 91 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhh--cCCEEEEEecCCCCCchhhhhhhhhcccc
Confidence 479999999999999999999999999998875533332 12222333 22333333322222211 1246778
Q ss_pred ceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCC--ceEEEEEECCCCcEEEEEEcCCC-----------------C--
Q 022840 93 FGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGM--TTHFAFVKDPDGYIFELIQRGPT-----------------P-- 151 (291)
Q Consensus 93 ~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~~DP~G~~iel~~~~~~-----------------~-- 151 (291)
+..+||+|+|++++.+.++++|+.+..+|....+. ...++.++.+......+++.... |
T Consensus 92 vkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l 171 (381)
T KOG0638|consen 92 VKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKL 171 (381)
T ss_pred hhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCC
Confidence 88999999999999999999999999888776543 33456678888777777775421 1
Q ss_pred -----CCceEEEeeeC--CccccHHHHHHhcCCeeeeeccCccc-----ceeeeeeccccCCceeEEEEeeecCce----
Q 022840 152 -----EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPEL-----KCALAMLGYAEEDQTTVLELAYSYGVT---- 215 (291)
Q Consensus 152 -----~~~~~v~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~l~~~~~~~---- 215 (291)
.+++|++.+++ .++.+.+||.+.|||...+..+...- ..+.+.+. ...+...+.+.++-...
T Consensus 172 ~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~ks 249 (381)
T KOG0638|consen 172 PKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKKS 249 (381)
T ss_pred CccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccHH
Confidence 34899999999 68999999999999998777654321 11222233 22233444443322111
Q ss_pred ------eeccCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCc
Q 022840 216 ------EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 216 ------~~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.+..|+|++|+++.++||-.+++.+ +++|++++.+|.
T Consensus 250 QIqeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps 292 (381)
T KOG0638|consen 250 QIQEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPS 292 (381)
T ss_pred HHHHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCH
Confidence 2557889999999999999999999 999999999885
No 19
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.78 E-value=1.5e-17 Score=125.82 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=90.1
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc------ccCCCCceEEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS------YDIGTGFGHLA 97 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~------~~~~~g~~~i~ 97 (291)
++|++|.|+|++++++||+++|||++......+ .....++..+ ...+++........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999987654322 1223444322 23454543222111 12456889999
Q ss_pred EEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC
Q 022840 98 IATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~ 150 (291)
|.|+|+++++++|+++|+++..+|...+++.+ .++++||+|+.|+|++....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~-~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGELK-IAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeEE-EEEEeccCCcEEEEEecCCC
Confidence 99999999999999999999988887666555 48899999999999998754
No 20
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=1.6e-17 Score=122.78 Aligned_cols=120 Identities=52% Similarity=0.945 Sum_probs=89.2
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCC-CcccCCCCceEEEEEECC
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TSYDIGTGFGHLAIATED 102 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~g~~~i~~~v~d 102 (291)
+.||+|.|+|++++.+||+++|||++......++.....+++..........+++...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999877654444445566776543102334555443222 223344578899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
+++++++|+++|+++..++... ++. .++||+||+|+.+||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~~~-~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-GMK-GIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-CCc-eEEEEECCCCCEEEeC
Confidence 9999999999999988877655 333 3578999999999985
No 21
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2.1e-17 Score=121.96 Aligned_cols=115 Identities=43% Similarity=0.759 Sum_probs=86.4
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCC-----------CCeeEEEeccCCCCcceEEEEeecCCCCcccCC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIG 90 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (291)
.++.|++|.|+|+++|++||+++|||++..+...++ +.+..+++.+++......+++.++.+..++..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999877665554 333445565544455678888886665555555
Q ss_pred CCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 91 TGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 91 ~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
.+ |++|.|++. ++.++|+++|+++...+. + ++|++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 54 677777766 456999999998875443 2 5789999999999974
No 22
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.78 E-value=5.6e-18 Score=133.28 Aligned_cols=127 Identities=31% Similarity=0.594 Sum_probs=97.8
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCC---------------ceeEEEEeeecCcee
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEED---------------QTTVLELAYSYGVTE 216 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~~~ 216 (291)
.++.|++|+|.|++++++||+++|||++..+...+...+.+++++++... ....|+|..+.+...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 45999999999999999999999999998776655556778887643211 235788887543221
Q ss_pred ------ec----cCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 217 ------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 217 ------~~----~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
+. .+.|+.|++|.|+|+++++++| ++.|+++...|.... +.+++|++||+|+.|||++....
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCCc
Confidence 21 1248999999999999999999 999999987664322 24678899999999999997654
No 23
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.76 E-value=4.2e-17 Score=123.76 Aligned_cols=118 Identities=19% Similarity=0.368 Sum_probs=87.0
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
|+.++.||.|.|+|++++++||+++|||++..+.. ...++..+ . ..+.+...........+.+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~--g--~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN--G--LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC--C--eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 68899999999999999999999999999875321 14455543 2 23434332222222233467899999
Q ss_pred EC--CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 100 TE--DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
++ |+++++++|+++|+++...+...+++.. .+||+||+||.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~-~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKK-SIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCce-EEEEECCCCCEEEEEeCC
Confidence 97 9999999999999998766655555444 478999999999999765
No 24
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.76 E-value=2.6e-17 Score=121.70 Aligned_cols=120 Identities=43% Similarity=0.742 Sum_probs=91.0
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCc-eeeccCcceeEEEEEecc
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-TEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hi~~~v~d 232 (291)
+.|+.+.|+|++++.+||+++|||++.......++...+.++..++...+..+++....+. .+...+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876544333334556666543113456666554332 223334578999999999
Q ss_pred hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
++++++++ +++|+++..+|... .+++++||+||+|+.|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 99999999 99999999887654 3468899999999999985
No 25
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=3.1e-17 Score=121.88 Aligned_cols=119 Identities=25% Similarity=0.379 Sum_probs=84.8
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc---ccCCCCceEEEEE
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS---YDIGTGFGHLAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~---~~~~~g~~~i~~~ 99 (291)
+++||+|.|+|++++.+||+++|||++......+..++...|+..++ ...+++........ .....|..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999765433333334456666532 23455554222111 1233478999999
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
|+ ++++++++|+++|+++..+|...++|... ++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEeC
Confidence 95 48999999999999988766555555443 57999999999983
No 26
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=1.9e-17 Score=126.20 Aligned_cols=122 Identities=19% Similarity=0.259 Sum_probs=89.8
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcc-----------cceeeeeeccccCCceeEEEEeeecCcee----
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTE---- 216 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 216 (291)
.+++|+++.|+|++++.+||++ |||++..+....+ ....+.++..+ .....++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 3689999999999999999998 9998765432211 12344455422 2356778776432211
Q ss_pred ---eccCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 217 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ---~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
...+.|+.|++|.|+|+++++++| +++|+++..++...++ +.+++|++||+|+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 112458899999999999999999 9999999886654433 46889999999999999984
No 27
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.76 E-value=1.4e-17 Score=125.88 Aligned_cols=124 Identities=20% Similarity=0.236 Sum_probs=93.3
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee------eccCcceeEEE
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE------YTKGNAYAQVA 227 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~g~~hi~ 227 (291)
++|+.|.|+|++++.+||+++|||++..+....+ ....++.. ....+.+........ ...+.+++|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5799999999999999999999999876654321 12333332 145565544222111 12346889999
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhhhh
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKEL 288 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~ 288 (291)
|.|+|+++.+++| +++|+++..+|...++ +.+.++++||+|+.|||++++.+...+
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~~~ 130 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKGPF 130 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCCcc
Confidence 9999999999999 9999999998876444 568999999999999999988775543
No 28
>PLN02300 lactoylglutathione lyase
Probab=99.76 E-value=1.4e-17 Score=141.65 Aligned_cols=133 Identities=44% Similarity=0.761 Sum_probs=102.4
Q ss_pred CCCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEE
Q 022840 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 150 ~~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 229 (291)
...++.|+.|.|+|++++.+||+++|||++..+...++..+...++..+....+..+++....+......+.|+.|++|.
T Consensus 21 ~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~ 100 (286)
T PLN02300 21 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIA 100 (286)
T ss_pred ccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEE
Confidence 34679999999999999999999999999876544333334556665544444667777654333333345688999999
Q ss_pred ecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhh
Q 022840 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~ 286 (291)
|+|++++.+++ +++|+++...|...++.+.+++||+||+|+.|||++++....
T Consensus 101 v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~ 153 (286)
T PLN02300 101 VEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPE 153 (286)
T ss_pred eCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCC
Confidence 99999999999 999999998887666544577899999999999999876544
No 29
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=7.8e-17 Score=122.74 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=84.3
Q ss_pred CCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCC-eeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEE
Q 022840 19 KDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEK-YSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 19 ~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~ 97 (291)
+.+++|+||+|.|+|++++.+||+++|||++..+...+++. ....|+..+... + .+.+... ++.++.|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~-h-~~~~~~~-------~~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKP-H-DIAFVGG-------PDGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCc-c-eEEEecC-------CCCCceEEE
Confidence 45789999999999999999999999999986654322222 234455543322 1 2323211 124789999
Q ss_pred EEECCHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 98 IATEDVYK---MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
|+|+|+++ +.++|+++|+++...|.....+...++||+||+||.|||+..
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99999877 568999999998755543332223358999999999999864
No 30
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=6.7e-17 Score=119.99 Aligned_cols=121 Identities=26% Similarity=0.350 Sum_probs=83.5
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCC--CCc-ccCCCCceEEEE
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG--VTS-YDIGTGFGHLAI 98 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~--~~~-~~~~~g~~~i~~ 98 (291)
++++||+|.|.|++++.+||+++|||++.......+.......+... .. ..+++..... ... ...+.|+.|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GG--YQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CC--cEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 68999999999999999999999999987543222211111222221 12 2344432211 111 123457889999
Q ss_pred EECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 99 ATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
.|+|+++++++|+++|+++...+....++.. ++|++||+|+.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFTGKR-FTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCCceE-EEEEECCCCCEEEecC
Confidence 9999999999999999997765544444444 4889999999999975
No 31
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=3.3e-17 Score=126.31 Aligned_cols=119 Identities=26% Similarity=0.354 Sum_probs=85.5
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecC-CCCeeEEEeccCCCCcce---EEEEeecCCCCcccCCCCceEEEE
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP-EEKYSNAFLGFGPEQSYF---VVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+|+||+|.|+|++++++||+++|||++......+ .+.....|+..++..... .+.+.. ..+.++.||||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987554332 222346666653221100 011111 11458999999
Q ss_pred EECCHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 99 ATEDVYKMV---ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
.|+|++++. ++|+++|+++...+.....+...++|++||+||.|||+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999986 99999999987666554444455689999999999999664
No 32
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.74 E-value=1.4e-16 Score=123.95 Aligned_cols=126 Identities=29% Similarity=0.333 Sum_probs=85.4
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEee--cC----------------CCCeeEEEeccCCCCcceEEEEeecC
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRD--VP----------------EEKYSNAFLGFGPEQSYFVVELTYNY 82 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~--~~----------------~~~~~~~~l~~~~~~~~~~l~~~~~~ 82 (291)
.++++||+|.|+|++++++||+++|||++..+.. .. .......++..++ ...|++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 3679999999999999999999999998753210 00 0124455565432 2235665543
Q ss_pred CCCcc-----cCCCCceEEEEEECCHHHHHHHHHHcCCeeecCC-ccC-CCC-ceEEEEEECCCCcEEEEEEcCC
Q 022840 83 GVTSY-----DIGTGFGHLAIATEDVYKMVENIRAKGGNVTREP-GPL-KGM-TTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 83 ~~~~~-----~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~-~~~-~~g-~~~~~~~~DP~G~~iel~~~~~ 149 (291)
..... ..+.|+.|+||.|+|+++++++|+++|+++...+ ... +++ ...++||+||||+.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 22111 1246899999999999999999999998754322 211 111 1235889999999999998763
No 33
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=5.1e-17 Score=119.89 Aligned_cols=114 Identities=31% Similarity=0.548 Sum_probs=84.8
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcc-----------cceeeeeeccccCCceeEEEEeeecCceeeccCc
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGN 221 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (291)
++.|++++|+|++++++||+++|||++..+...++ +++.+.++.+.+...+..++|..+++..++..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999877654443 3444455654333456789999877765555555
Q ss_pred ceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 222 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+ |++|.|++. ++.++| +++|+.+...|. + ++++.||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~------~-~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED------G-VYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC------C-EEEEECCCCCEEEEec
Confidence 5 555556654 445788 999998876443 2 7899999999999985
No 34
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.74 E-value=1.8e-16 Score=117.48 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=82.0
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++|++|.|+|++++++||+++|||++..... ++ ..++..........+.+... ...+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6899999999999999999999999999865421 11 23444321122223333211 123678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 101 E---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
. |+++++++|+++|+++...|.....+....+||+||+||.||+....
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999987654333322223488999999999998754
No 35
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=2.9e-16 Score=118.42 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=84.8
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEEC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+++||+|.|+|++++++||+++|||++..... . ...|+..+.......+.+..... ...++.||+|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 589999999999999999999999999865432 1 24566543222233444443221 1358899999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 102 DVYKMV---ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
|++++. ++|+++|+++...+...+.+...++||+||+|+.|||....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 988776 59999999876655554444444579999999999999654
No 36
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.73 E-value=1.1e-16 Score=121.84 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=85.3
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccc-eeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEE
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~ 229 (291)
+.++.|+++.|+|++++.+||+++|||++..+...+.+. ....|+..... ...+.+.. ..+.+++|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec-------CCCCCceEEEEE
Confidence 467999999999999999999999999987664322221 12334443322 23333321 113578999999
Q ss_pred ecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
|+|++++.+.. ++|+++|+++...|.++...+++++||+||+|+.|||.+.
T Consensus 75 v~d~~~l~~~~-~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAG-DIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHH-HHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99977754333 4459999998877765543346889999999999999763
No 37
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.73 E-value=1.2e-16 Score=119.26 Aligned_cols=119 Identities=29% Similarity=0.478 Sum_probs=84.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCC-CCc---c--cCCCCceEE
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG-VTS---Y--DIGTGFGHL 96 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~---~--~~~~g~~~i 96 (291)
+++|++|.|+|++++++||+++|||+..............+++..++ ..+++..... ... . ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999865433333344556665432 2344443211 111 1 124578899
Q ss_pred EEEECCHHHHHHHHHHcCCeeecC-CccCCCCceEEEEE--ECCCCcEEEEEE
Q 022840 97 AIATEDVYKMVENIRAKGGNVTRE-PGPLKGMTTHFAFV--KDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~DP~G~~iel~~ 146 (291)
||.|+|+++++++|+++|+++..+ |...++|.. ..|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKP-VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCE-EEEecccccCcEEEEecC
Confidence 999999999999999999998754 555555544 3556 799999999975
No 38
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.73 E-value=9e-17 Score=124.98 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=88.9
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeec----cC--------------cccceeeeeeccccCCceeEEEEeeec
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTI----DS--------------PELKCALAMLGYAEEDQTTVLELAYSY 212 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~ 212 (291)
+.++.||+|.|+|++++.+||+++|||++..+. .. ....+.+.++..++ +..|+|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 356899999999999999999999999764211 00 11124455665432 4457777654
Q ss_pred Ccee-ec----cCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCccc--CCC-CceEEEEECCCCceEEEecchhh
Q 022840 213 GVTE-YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPI--PGL-NTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 213 ~~~~-~~----~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~--~~~-~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
+... .. .+.|+.|++|.|+|++++++++ +++|+++..++... ++. ..+++|++||||+.|||+++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 3221 11 2368999999999999999999 99998765433221 111 23789999999999999997654
No 39
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=1.5e-16 Score=119.92 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=88.7
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
|.++.|+.|.|+|++++.+||+++||+++..+... ...++..++...+..+.+..... ...|++|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 56899999999999999999999999998755321 23455543222345565543211 136899999999
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchh
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~ 283 (291)
+|++++.+ +.++|+++|+++...|...+..+.+++||+||+|+.|||.....
T Consensus 71 ~d~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 71 GDIDEVML-GGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CCHHHHHH-HHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 99777764 22344999999887776666555677999999999999987543
No 40
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.71 E-value=6.5e-16 Score=120.67 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=86.7
Q ss_pred CCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEE
Q 022840 19 KDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
|.+.+|+|++|.|+|++++++||+++|||++........+.....|+...... ..+.+..... ....++.||||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKV--HDVAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCc--eeEEEecCCC----CCCCCceEEEE
Confidence 67899999999999999999999999999987554333222234566543222 2233322111 12236789999
Q ss_pred EECC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 99 ATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|+++...|.....+...++|++||+|+.|||+...
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9986 5578899999999976565544333333478999999999999873
No 41
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.71 E-value=4.5e-17 Score=125.55 Aligned_cols=120 Identities=21% Similarity=0.228 Sum_probs=86.4
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCc-ccceeeeeeccccCC---ceeEEEEeeecCceeeccCcceeEEEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP-ELKCALAMLGYAEED---QTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~g~~hi~~ 228 (291)
++.||+|.|+|++++.+||+++||+++..+...+ .+.....|+..+... ....+.+.. ..+.|++|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999987554332 122345556543210 011111111 11468999999
Q ss_pred EecchHHHH---HHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchh
Q 022840 229 STDDVYKSA---EVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 229 ~v~d~~~~~---~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~ 283 (291)
.|+|++++. ++| +++|+++..+|+++......++|++||+|+.|||.....
T Consensus 74 ~v~die~~~~~~~~L----~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 74 EVHDFDAQGLGHDYL----REKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred EcCCHHHHHHHHHHH----HHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 999999886 556 999999998887766545567899999999999987554
No 42
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.70 E-value=1.4e-16 Score=118.62 Aligned_cols=120 Identities=25% Similarity=0.388 Sum_probs=84.5
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeec--CCCCeeEEEeccCCCCcceEEEEeecCCCCcccC---CCCceEEE
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDV--PEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDI---GTGFGHLA 97 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~---~~g~~~i~ 97 (291)
+|+||+|.|+|++++.+||+++|||++...... ........++..+ ...+.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG--EGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST--SSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc--ccceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999887662 2223344555544 3334443333332222111 01445666
Q ss_pred EEE---CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEE
Q 022840 98 IAT---EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel 144 (291)
+.+ +|+++++++|+++|+++..++....++...+.|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 666 56888999999999998888777776666556799999999997
No 43
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=3.7e-16 Score=116.16 Aligned_cols=113 Identities=13% Similarity=0.191 Sum_probs=82.1
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
++.+|.||+|.|+|++++.+||+++|||++..+. . ...|+..++. ...+.+.... .+..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~---~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERT---A---KATYFRSDAR--DHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCC---C---CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEE
Confidence 5789999999999999999999999999986432 1 1456665432 2233333211 256789999
Q ss_pred ECC---HHHHHHHHHHcCCeeecCCccCC--CCceEEEEEECCCCcEEEEEEcC
Q 022840 100 TED---VYKMVENIRAKGGNVTREPGPLK--GMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d---~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
|+| +++++++|+++|+++...+.... .+...++||+|||||.||++..+
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 99999999999998765443211 22234578999999999998665
No 44
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=8.6e-16 Score=115.31 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=81.6
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCe-eEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY-SNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
|+.+++||+|.|+|++++++||+++|||++..+........ ...++..+ . ..+.+...... ...++.|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~--~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG--G--LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC--C--eEEEEecCCCC----CCCCceEEEE
Confidence 67899999999999999999999999998765432211000 01122222 1 23444422211 1236789999
Q ss_pred EEC--CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 99 ATE--DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
.|+ +++++.++|+++|+++..+ ....++.+..+||+||+||.|||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 998 7999999999999987543 222333333589999999999998653
No 45
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=2.5e-16 Score=116.97 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=82.8
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee---eccCcceeEEEEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi~~~ 229 (291)
++.|+.|.|+|++++.+||+++|||++..+...+...+...|+..++ +..+++.......+ .....|+.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999765433222223445555432 35567664322111 1233588999999
Q ss_pred ecc---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 230 TDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
|+| +++.+++| +++|+++..+|...+. +.+.++++||+|+.|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 965 66667777 9999999876654333 345578999999999983
No 46
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.70 E-value=7.5e-16 Score=118.87 Aligned_cols=121 Identities=19% Similarity=0.299 Sum_probs=85.9
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecC---CCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP---EEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i 96 (291)
.-++|+||+|.|+|++++++||+++|||++....... .......++..+.... .+.+... ..+.++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcC------CCCceeEEE
Confidence 3578999999999999999999999999986543221 1123455665533222 2333222 113478999
Q ss_pred EEEECCHH---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 97 AIATEDVY---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 ~~~v~d~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
+|.|+|++ +++++|+++|+++..++...+.+....+|++||+|+.|||+...
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 99998755 68999999999987666554443444588999999999998664
No 47
>PRK11478 putative lyase; Provisional
Probab=99.70 E-value=3.5e-16 Score=117.05 Aligned_cols=120 Identities=21% Similarity=0.179 Sum_probs=83.2
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcc-cceeeeeeccccCCceeEEEEeeecCcee---eccCcceeEEE
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-LKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi~ 227 (291)
.++.|+.+.|+|++++.+||+++|||++..+..... ..+.. .+...+ ...+++.....+.. .....|+.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999764321111 11111 122211 35666654322111 11235789999
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
|.|+|+++++++| +++|+++...+. .+..+.+++||+||+|+.|||+|
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRV-DPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeecccc-CCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999 999999864332 23334688999999999999987
No 48
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.70 E-value=1.1e-15 Score=113.10 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=81.2
Q ss_pred CCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEE
Q 022840 19 KDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
|.+++|+|++|.|+|++++.+||+++|||++..+.. ...++...+......+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 568899999999999999999999999999875422 144554322112233433321 1247899999
Q ss_pred EEC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 99 ATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
.|+ ++++++++|+++|+++...+....++ . .+||+||+||.+|++..
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~-~-~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGHG-K-AYRFRSPDGHPMELYWE 118 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCCc-c-eEEEECCCCCEEEEEEe
Confidence 997 58899999999999864322222222 2 47899999999999864
No 49
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.70 E-value=5.6e-16 Score=116.33 Aligned_cols=114 Identities=21% Similarity=0.348 Sum_probs=80.5
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECC-
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED- 102 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d- 102 (291)
|+||.|.|+|++++++||+++|||++..... ...++..+ . ..+.+.............+..||+|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~--~--~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIG--G--TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeC--c--eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 13344443 2 23444332221111223467899999974
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 103 -VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
+++++++|+++|+++..++....++.. .+||+||+||.|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 999999999999997655444434444 378999999999998764
No 50
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=7.6e-16 Score=113.82 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=80.5
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEee----cCCCCcccCCCCceEEE
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTY----NYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~----~~~~~~~~~~~g~~~i~ 97 (291)
+++.|+.|.|+|++++.+||+++|||++.... +. ...+. + . +.+.... .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~----~~--~~~~~-~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF----GE--NVTFE-G--G--FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeecc----Cc--eEEEe-c--c--ceeccchhhhccCCcccccccCCceEEE
Confidence 47899999999999999999999999985321 11 11111 1 1 1111110 00111112233557999
Q ss_pred EEECCHHHHHHHHHHcCC-eeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 98 IATEDVYKMVENIRAKGG-NVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
|.|+|+++++++|+++|+ ++..+|...++|.+. ++|+|||||.|||.+.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 999999999999999986 677788888887664 8899999999999864
No 51
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1.2e-15 Score=113.25 Aligned_cols=118 Identities=29% Similarity=0.472 Sum_probs=83.6
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCC---CcccCCCCceEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV---TSYDIGTGFGHLA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~---~~~~~~~g~~~i~ 97 (291)
+++++|+.|.|+|++++++||+++|||+........ . ..++..++ ..+++...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 578999999999999999999999999987543211 1 33344332 23444432221 1223456789999
Q ss_pred EEECC-HHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCcEEEEEE
Q 022840 98 IATED-VYKMVENIRAKGGNVTREPGPLKG--MTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d-~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DP~G~~iel~~ 146 (291)
|.+++ +++++++|+++|+++...+....+ +....+||+||+|+.+|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998766654322 12234789999999999976
No 52
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=4e-16 Score=118.34 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=85.6
Q ss_pred eEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchH
Q 022840 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 234 (291)
.||.|.|+|++++.+||+++|||++..+... ...++...+...+..+.+.. ....+++|++|.|+|.+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998766321 23455533222234443321 12468999999998854
Q ss_pred HHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhh
Q 022840 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~ 286 (291)
++ .++.++++++|+++..+|..++..+.+.+||+||+|+.|||.-..+..+
T Consensus 69 ~v-~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~ 119 (141)
T cd07258 69 DI-GKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFA 119 (141)
T ss_pred HH-HHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceec
Confidence 33 3344555999999988888766556788999999999999987655443
No 53
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.69 E-value=1.1e-15 Score=113.00 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=81.1
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
+++++.|+.|.|+|++++++||+++|||++.... + . ..++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEED---D-D--RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccC---C-C--eEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 4789999999999999999999999999986432 1 1 33443211112222333221 12368899999
Q ss_pred E---CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 100 T---EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
| +|+++++++|+++|+++...|.....+....+|+.||+||.||++...
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 9 479999999999999876553333333223588999999999998653
No 54
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.69 E-value=4e-16 Score=116.48 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=84.5
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce-e---e--ccCcceeEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-E---Y--TKGNAYAQV 226 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~--~~~~g~~hi 226 (291)
++.|+.+.|+|++++.+||+++|||++.......+......++..+ ...++|....+.. + + ..+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999986543222223455555533 3456665432211 1 0 124578899
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecC-CcccCCCCceEEEE--ECCCCceEEEec
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGPIPGLNTKITSF--VDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~-p~~~~~~~~~~~~~--~DP~G~~iel~~ 280 (291)
+|.|+|++++.++| +++|+++..+ |...++ +.+..|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999 9999999875 433333 3455666 799999999986
No 55
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.68 E-value=1.7e-15 Score=110.75 Aligned_cols=114 Identities=24% Similarity=0.265 Sum_probs=81.7
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCH
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDV 103 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~ 103 (291)
+.|++|.|+|++++++||+++||+++..... ... ...++..++ . ..+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~-~--~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGG-G--AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCC-c--cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865432 112 234444332 1 122222221111 1233567899999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 104 YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
++++++|+++|+++..+|...+++.. .++|+||+||.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGR-FAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEE-EEEEECCCCCEEEeEC
Confidence 99999999999998888877665544 5889999999999975
No 56
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=2.1e-15 Score=112.00 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=81.2
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
|.++++|+.|.|+|++++++||+++|||+..... +. ..++..++ ...+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GP--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CC--EEEEEcCC---CcEEEEecCC------CCCCcceEEEE
Confidence 4688999999999999999999999999886521 11 22333222 2334443321 11246799998
Q ss_pred EC--CHHHHHHHHHHcCCeeecCCccC-------CCCceEEEEEECCCCcEEEEEEcC
Q 022840 100 TE--DVYKMVENIRAKGGNVTREPGPL-------KGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
++ |+++++++|.++|+++...|... .+|.+ .+||+||+||.|||++.+
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGR-GVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCee-EEEEECCCCCEEEEEecc
Confidence 86 69999999999999986655443 24444 488999999999999863
No 57
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.68 E-value=2.4e-15 Score=116.93 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=79.3
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEEC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++|+||+|.|+|++++++||+++|||++......+.+.....++..+... ..+.+... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~--~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGV--HDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCc--ceEEEecC-------CCCceeEEEEEcC
Confidence 68999999999999999999999999986543322222233445432222 12322221 2347889999998
Q ss_pred C---HHHHHHHHHHcCCee--ecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 102 D---VYKMVENIRAKGGNV--TREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
| +++++++|+++|+.. ...|.....+...++||+||+||.|||+...
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 778889999999863 2233222212223588999999999998654
No 58
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.68 E-value=9e-16 Score=118.43 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCc---ccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEE
Q 022840 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP---ELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 226 (291)
.+.++.|+.|.|+|++++.+||+++|||++..+.... .....+.++..++. +..+.+... ....++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcC------CCCceeEEE
Confidence 3578999999999999999999999999976543221 11234555654322 333444321 123688999
Q ss_pred EEEecchHH---HHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 227 AISTDDVYK---SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 227 ~~~v~d~~~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
+|.|+|.++ +.++| +++|+++..+|..++..+.+++|++||+|+.|||......
T Consensus 78 af~V~d~~~l~~~~~~L----~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~ 134 (154)
T cd07237 78 MLEVTSLDDVGRAYDRV----RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRT 134 (154)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceE
Confidence 999987554 55555 9999999888876665567889999999999999875443
No 59
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.68 E-value=2.7e-15 Score=115.90 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=81.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc-ccCCCCceEEEEEEC
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATE 101 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~g~~~i~~~v~ 101 (291)
+++||+|.|+|++++.+||+++|||++..+.. + ...++..+. ..+..+.+........ .....++.||+|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57999999999999999999999999875432 1 233333221 1234566655322221 122346889999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 102 D---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
| +++++++|+++|+.+.. +.... ....+||+||+|+.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-ccccc--cEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999997542 22222 233589999999999999875
No 60
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.68 E-value=9.5e-16 Score=113.61 Aligned_cols=116 Identities=22% Similarity=0.180 Sum_probs=81.1
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
..++.|+.|.|+|++++.+||+++|||++..... ++ .. ++...+...+..+.+.. ...+++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~-~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RV-YLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eE-EEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3578999999999999999999999999865532 11 12 22221111233444421 1235789999999
Q ss_pred c---chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 231 D---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
. |++++.+++ +++|+++...|.......++.+||+||+|+.|||.+..
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 566666666 99999988765433332357899999999999998754
No 61
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=3.1e-15 Score=112.32 Aligned_cols=115 Identities=25% Similarity=0.357 Sum_probs=84.4
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHH
Q 022840 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~ 104 (291)
+||.|.|+|++++++||+++||+++......+ +.....|+..++. ...+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987654432 2234667765432 2234443321 1447899999999875
Q ss_pred ---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 105 ---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
+++++|.++|+++..++...+.+...+++|+||+|+.|||.+..
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 78899999999987766554544344578999999999999765
No 62
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.67 E-value=1e-15 Score=118.98 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=80.4
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
|.++.|+.|.|+|++++.+||+++|||++.......++.....++...+. ...+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEec-------CCCCceeEEEEEc
Confidence 57899999999999999999999999998654332222223344442221 23343322 1245789999999
Q ss_pred cchHHHHHHHHHHHHHhCCE--eecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 231 DDVYKSAEVVNLVTQELGGK--ITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~--~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
+|.+++ ..+.++|+++|+. +..+|..+...+.+++||+||+|+.|||+...
T Consensus 72 ~~~~~v-~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHNI-IRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHHH-HHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 873332 2233444999986 33445443333457899999999999998643
No 63
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=1.1e-15 Score=113.33 Aligned_cols=120 Identities=23% Similarity=0.274 Sum_probs=84.1
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcc-cceeeeeeccccCCceeEEEEeeecCc--e-eeccCcceeEEE
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-LKCALAMLGYAEEDQTTVLELAYSYGV--T-EYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-~~~~~~g~~hi~ 227 (291)
.++.|+++.|.|++++.+||+++|||++.......+ ..+.+ .+...+ +..+++...... . ....+.|+.|++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~ 77 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLA 77 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEE
Confidence 368999999999999999999999999875432222 11222 222111 344555432221 1 112345889999
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
|.|+|++++.+++ +++|+++...+... ..+.+++|++||+|+.|||+|
T Consensus 78 ~~v~d~~~~~~~l----~~~G~~~~~~~~~~-~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHL----KAKGVEVEPIRVDE-FTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHH----HHcCCccccccccC-CCceEEEEEECCCCCEEEecC
Confidence 9999999999999 99999987765432 334678999999999999986
No 64
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.67 E-value=2.7e-15 Score=114.32 Aligned_cols=113 Identities=19% Similarity=0.392 Sum_probs=82.3
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEEC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+++||.|.|+|++++++||+++|||++..... . ...|+..+.... .+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 489999999999999999999999999864321 1 245666543322 2333221 1247889999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 102 DVYKMV---ENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
|++++. ++|+++|+++...+.....+...++||+||+||.|||++..
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 887775 89999999987655443333334578999999999999875
No 65
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.67 E-value=4.1e-15 Score=109.14 Aligned_cols=111 Identities=24% Similarity=0.415 Sum_probs=84.0
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEEC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++++|+.|.|+|++++++||+++|||++..... ...++..+. .....+.+.... ..+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeCC-------CCCceeEEEEcC
Confidence 589999999999999999999999999876532 145665542 223334443321 236789999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 102 ---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
++++++++|+++|+++...+...+++.. .++|.||+||.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEc
Confidence 6889999999999998777654555444 47899999999999865
No 66
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=2.5e-15 Score=111.64 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=81.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCC-CeeEEEeccCCCCcceEEEEeecCCCCc--ccCCCCceEEEEE
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-KYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHLAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~g~~~i~~~ 99 (291)
+|+||+|.|+|++++++||+++|||++.......+. .....++..........+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766543221 1223344322111223455554322211 1223367899999
Q ss_pred EC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 100 TE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
|+ ++++++++++++|+++..++.. ++.. .+||+||+|+.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FGER-SIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cceE-EEEEECCCCCEEEeC
Confidence 98 5799999999999987654332 3333 478999999999984
No 67
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=6.9e-15 Score=109.35 Aligned_cols=117 Identities=24% Similarity=0.365 Sum_probs=83.9
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCC-CcccCCCCceEEEEEE
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV-TSYDIGTGFGHLAIAT 100 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~g~~~i~~~v 100 (291)
++|+||+|.|+|++++.+||+++|||++.... + ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 68999999999999999999999999997652 1 145555432 2334555443322 1223445788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC
Q 022840 101 E---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~ 149 (291)
+ ++++++++|.++|+++..+ .....+ ..+||+||+||++||....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~~--~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLVS--EALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccce--eEEEEECCCCCEEEEEEecC
Confidence 7 4899999999999987543 222222 34789999999999987654
No 68
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2.7e-15 Score=110.25 Aligned_cols=117 Identities=24% Similarity=0.298 Sum_probs=82.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCC--cccCCCCceEEEEEECCH
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT--SYDIGTGFGHLAIATEDV 103 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~--~~~~~~g~~~i~~~v~d~ 103 (291)
||+|.|+|++++.+||+++|||++.......+ ....+.+.... .....+.+....... ....+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPG-SPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCC-CCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999976643222 22233333221 113445554333221 112344678999999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 104 YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
++++++|+++|+++..++....++ ..++++||+|+.|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999988777444443 34789999999999974
No 69
>PRK06724 hypothetical protein; Provisional
Probab=99.67 E-value=3.5e-15 Score=111.21 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=77.1
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhc---CCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECF---GMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i 96 (291)
|+.+++||+|.|+|++++++||+++| |++...... + . .+. ..+.+...... .....|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g~--~~l~l~~~~~~--~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TGE--SEIYFKEVDEE--IVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CCC--eeEEEecCCcc--ccCCCCceeE
Confidence 67889999999999999999999966 666532111 1 1 111 11212111110 0123467899
Q ss_pred EEEE---CCHHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCcEEEEEEcC
Q 022840 97 AIAT---EDVYKMVENIRAKGGNVTREPGPLKG--MTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 ~~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DP~G~~iel~~~~ 148 (291)
||.| +++++++++|+++|+++..+|...+. .+...++|+|||||.|||...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 78999999999999998777655431 2223478999999999998764
No 70
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=3.1e-15 Score=111.51 Aligned_cols=119 Identities=27% Similarity=0.470 Sum_probs=84.0
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecC-CCCeeEEEeccCCCCcceEEEEeecCCC-Cc-----ccCCCCceEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVP-EEKYSNAFLGFGPEQSYFVVELTYNYGV-TS-----YDIGTGFGHL 96 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~-----~~~~~g~~~i 96 (291)
|+||+|.|+|++++.+||+++|||++....... ......+++..+ ...+++...... .. ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987654332 233445666542 334555443221 11 1346788999
Q ss_pred EEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCC--CcEEEEEE
Q 022840 97 AIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPD--GYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~--G~~iel~~ 146 (291)
+|.|+|+++++++|+++|+++..++.....++..+.++.+|+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999998877753333334434444455 99999975
No 71
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=6.3e-15 Score=109.14 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=83.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc----ccCCCCceEEEEEEC
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS----YDIGTGFGHLAIATE 101 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~----~~~~~g~~~i~~~v~ 101 (291)
+..|.|+|++++++||+++|||++......+++......+..+ ...+ .+........ .....+..+++|.|+
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~--~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 77 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG--DGGV--MVGSVRDDYRASSARAGGAGTQGVYVVVD 77 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC--CEEE--EEecCCCcccccccccCCCceEEEEEEEC
Confidence 3568999999999999999999997654333333334445543 2222 2322111111 123345678999999
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 102 DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
|+++++++|+++|+++..++...++|... ++++||+||.|+|.+
T Consensus 78 d~d~~~~~l~~~G~~v~~~~~~~~~g~~~-~~~~DPdG~~~~l~~ 121 (122)
T cd08355 78 DVDAHYERARAAGAEILREPTDTPYGSRE-FTARDPEGNLWTFGT 121 (122)
T ss_pred CHHHHHHHHHHCCCEEeeCccccCCCcEE-EEEECCCCCEEEEec
Confidence 99999999999999999888888877654 789999999999864
No 72
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.66 E-value=3.3e-15 Score=110.41 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=80.5
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEEC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+|.||+|.|+|++++.+||+++|||++..+. .. ...++..++. .+.+.+.... ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRP---ED--GALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCC---CC--CeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEEC
Confidence 37899999999999999999999999875431 11 1445554322 3444444321 236789999996
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccC--CCCceEEEEEECCCCcEEEEEEcC
Q 022840 102 ---DVYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
|+++++++|+++|+++...+... ..+...++||+|||||.||++...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 48899999999999987544211 222223589999999999998754
No 73
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=5.3e-15 Score=109.92 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=79.5
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEee---cC---C--CCcccCCCCceE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTY---NY---G--VTSYDIGTGFGH 95 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~~---~--~~~~~~~~g~~~ 95 (291)
+.|+.|.|+|++++.+||+++|||++..... .+.+ ..+..+ ...+.+.... .. . ........+..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999864322 1111 112211 1111121111 00 0 011111224468
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 96 LAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
++|.|+|+++++++++++|+++..++...++|... ++++||+||.|+|.+
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~~~~~~ 124 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTV-AYVRDINGFLIELCS 124 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEE-EEEECCCCCEEEEec
Confidence 99999999999999999999988888878887654 789999999999986
No 74
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.65 E-value=3.3e-15 Score=109.25 Aligned_cols=114 Identities=25% Similarity=0.238 Sum_probs=83.2
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecch
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~ 233 (291)
+.|+.|.|+|++++.+||+++||+++..... ....+ .++..++ ...+.+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865442 12223 3333322 1223333322111 1234568999999999
Q ss_pred HHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
++..+++ .++|+++..+|...++ +++.++++||+|+.|+|+|
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999 9999999998877664 4689999999999999975
No 75
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.65 E-value=9.1e-15 Score=106.82 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=79.1
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++|+.|.|+|++++++||++ |||++..+. ++ ..|+..+. .....+..... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~---~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD---ELYYRGYG-TDPFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC---eEEEecCC-CccEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 999886542 11 34554322 22222221111 124678999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
+|.+++.+.+++.|......+. .+++.. +++|+||+||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEec
Confidence 9999999999999998665432 344444 58999999999999865
No 76
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.65 E-value=3.3e-15 Score=113.30 Aligned_cols=116 Identities=24% Similarity=0.297 Sum_probs=84.1
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++||+++..+.. ...++..+ +..+.+.............++.|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999865421 22334432 34454433222111112346789999997
Q ss_pred --chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 232 --DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 --d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
|++++++++ +++|+++...|...+. +++.+||+||+|+.|||.+..
T Consensus 73 ~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 788888888 9999998877765544 468999999999999998743
No 77
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=2.9e-15 Score=108.98 Aligned_cols=113 Identities=25% Similarity=0.312 Sum_probs=80.2
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc-ccCCCCceEEEEEECC
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATED 102 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~g~~~i~~~v~d 102 (291)
|+|++|.|+|++++++||+++|||++....... ....++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 589999999999999999999999876543221 12455554432 2344443222211 1223467899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEE
Q 022840 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel 144 (291)
+++++++++++|+++..++.. .++.. .+++.||+|+.+||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998776654 23333 47899999999986
No 78
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.64 E-value=1.7e-14 Score=106.57 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=84.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCC--CcccCCCCceEEEEEECCHH
Q 022840 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV--TSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 27 v~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~--~~~~~~~g~~~i~~~v~d~~ 104 (291)
+.|.|+|++++.+||+++|||++......+++......+..++ . .+.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD--S--VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC--E--EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 5689999999999999999999887654344443444455432 2 2334322111 01123345679999999999
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 105 KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
++++++.++|+++..++...++|.+ .++++||+|+.|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDR-YGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccce-EEEEECCCCCEEEEecC
Confidence 9999999999999888877777765 48899999999999863
No 79
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=7.6e-15 Score=111.33 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=81.3
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCH-
Q 022840 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDV- 103 (291)
Q Consensus 25 ~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~- 103 (291)
.||+|.|+|++++.+||+++|||++..+... ...|+...+......+.+.. ....++.||+|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998754321 25666543222222232211 1234899999999764
Q ss_pred --HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC
Q 022840 104 --YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 104 --~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~ 149 (291)
+++.++|.++|+++...|...+.+...++||+||+|+.|||.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 5779999999999876666554444446899999999999987653
No 80
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.64 E-value=1e-14 Score=107.43 Aligned_cols=112 Identities=20% Similarity=0.214 Sum_probs=79.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCC----cccCCCCceEEEEEEC
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT----SYDIGTGFGHLAIATE 101 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~----~~~~~~g~~~i~~~v~ 101 (291)
++.|.|+|++++.+||+++|||++.... .. ...+..++. .+.+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~--~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DW--YVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----Cc--EEEEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 6789999999999999999999987541 11 333433221 2344443221111 0111112348999999
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 102 DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
|+++++++|.++|+++..++...++|.+. ++++||+|+.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWGQRH-FIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCcceE-EEEECCCCCEEEEEC
Confidence 99999999999999988777777776554 789999999999985
No 81
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.64 E-value=1.2e-14 Score=107.18 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=81.3
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+.+|+|+.|.|+|++++++||+++|||++..... ...++..+. .....+.+... ...+..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATG-SEHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCC-CccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999865422 134554332 22223333211 123568999999
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCcc--CCCCceEEEEEECCCCcEEEEEEcC
Q 022840 101 ---EDVYKMVENIRAKGGNVTREPGP--LKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
+++++++++|+++|+++..++.. .+++.. .++|+||+||.|||+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 56899999999999998766533 234433 478999999999998754
No 82
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=2.1e-14 Score=107.19 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=81.9
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhc---CCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc---ccCCCCceEE
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECF---GMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS---YDIGTGFGHL 96 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~---~~~~~g~~~i 96 (291)
+|+||.|.|+|++++.+||+++| ||++..... .. ..|+.. .. ...+.+.......+ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~-~~--~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG-DG--GTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec-CC--ceEEEEEecccCCCcccccCCcCeeEE
Confidence 57999999999999999999999 999876531 11 233322 11 23455554332221 1234578899
Q ss_pred EEEEC---CHHHHHHHHHHcCCeeecCCccC--CCCceEEEEEECCCCcEEEEEE
Q 022840 97 AIATE---DVYKMVENIRAKGGNVTREPGPL--KGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~DP~G~~iel~~ 146 (291)
+|.|+ |+++++++|+++|+++...+... ..+....+||+||+||++||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 99997 48899999999999988766542 1222334789999999999985
No 83
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.63 E-value=1.6e-15 Score=112.94 Aligned_cols=120 Identities=24% Similarity=0.241 Sum_probs=79.4
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccC--cccceeeeeeccccCCceeEEEEeeecCceeecc---CcceeEEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDS--PELKCALAMLGYAEEDQTTVLELAYSYGVTEYTK---GNAYAQVA 227 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~g~~hi~ 227 (291)
+|+|+++.|+|++++.+||+++|||++...... ........++..+. ....+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 478999999999999999999999998877651 22233444555332 233333322222111111 01335566
Q ss_pred EEec---chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEE
Q 022840 228 ISTD---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 ~~v~---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel 278 (291)
+.+. |++++.++| ++.|+++..+|..........+|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6555 555666666 9999999999877766555567899999999997
No 84
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=4.4e-15 Score=109.09 Aligned_cols=117 Identities=23% Similarity=0.313 Sum_probs=84.1
Q ss_pred EEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee--eccCcceeEEEEEecch
Q 022840 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDDV 233 (291)
Q Consensus 156 ~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~v~d~ 233 (291)
|+.+.|.|++++.+||.++|||++..+.....+ .....+...+. ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG-FRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC-cEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 789999999999999999999998866432222 23333432221 134455543322211 12345778999999999
Q ss_pred HHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+++.+++ .++|+++..+|...+ .++.+|++||+|+.|||+|
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999 999999998874433 3689999999999999975
No 85
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.63 E-value=3.3e-14 Score=107.07 Aligned_cols=120 Identities=23% Similarity=0.372 Sum_probs=82.4
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECC
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED 102 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d 102 (291)
+|+||+|.|+|++++++||+++|||++...... ....++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998754321 1245555431 11233444433222111234478899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC
Q 022840 103 VY---KMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 103 ~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~ 150 (291)
++ +++++|.++|+++...+. .++.. .++++||+||.|||+...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~--~~~~~-~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD--HGNAW-SIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC--CCcee-EEEEECCCCCEEEEEEcCCC
Confidence 55 588999999998765432 22223 47899999999999977643
No 86
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=120.08 Aligned_cols=227 Identities=17% Similarity=0.228 Sum_probs=145.9
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcc--cCCCCceEEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSY--DIGTGFGHLA 97 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~g~~~i~ 97 (291)
-.+++++|.+.|.|.+.+..=|-..|||+...+.-... ...++.| +..+++.-........+ .+|++.+.++
T Consensus 19 ~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk~----v~l~rQG--dinlvvn~~~~s~a~~f~~~Hgps~~a~a 92 (363)
T COG3185 19 GTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSKA----VTLYRQG--DINLVVNAEPDSFAAEFLDKHGPSACAMA 92 (363)
T ss_pred CCCceeEEEEecCCHHHHHHHHHHHhCccccccccccc----eeEEEeC--CEEEEEcCCCcchhhHHHHhcCCchheeE
Confidence 38999999999999954444445559998876433221 2233322 33333322211111121 3788999999
Q ss_pred EEECCHHHHHHHHHHcCCeeecCCcc-----CC---CCceEEEEEECCCC-cE-E--EEEEcC----CC---CCCceEEE
Q 022840 98 IATEDVYKMVENIRAKGGNVTREPGP-----LK---GMTTHFAFVKDPDG-YI-F--ELIQRG----PT---PEPLCQVM 158 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~-----~~---~g~~~~~~~~DP~G-~~-i--el~~~~----~~---~~~~~~v~ 158 (291)
|.|+|...++++.++.|++....+.. .+ +-.+..+||.|..| .- + ++.... .. ...|+|++
T Consensus 93 ~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl~ 172 (363)
T COG3185 93 FRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHLT 172 (363)
T ss_pred EeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechhh
Confidence 99999999999999999953322221 11 11223577877773 11 1 111111 11 23689999
Q ss_pred eeeC--CccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee-------eccCcceeEEEEE
Q 022840 159 LRVG--DLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-------YTKGNAYAQVAIS 229 (291)
Q Consensus 159 l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~~g~~hi~~~ 229 (291)
.+|. .++.+..||+++|||+.....+.++..-.+..-....+++...|.|..+.+..+ ...|.|++||+|.
T Consensus 173 ~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~~ 252 (363)
T COG3185 173 HNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAFG 252 (363)
T ss_pred hhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEec
Confidence 8886 799999999999999988776654421111112222344567777665444332 2256799999999
Q ss_pred ecchHHHHHHHHHHHHHhCCEeecCCc
Q 022840 230 TDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
++||.+.++++ +++|+.++..|.
T Consensus 253 T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 253 TDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred ccHHHHHHHHH----HHcCCccCCCch
Confidence 99999999999 999999998874
No 87
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.62 E-value=8.2e-15 Score=111.68 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=84.4
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
+.++.|+.|.|.|++++.+||+++|||++...... ...++..+.. ...+.+... ..+++.|++|.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~-----~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD-----QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC-----eEEEEECCCC--cceEEEccC-------CCCceEEEEEEC
Confidence 35789999999999999999999999997644211 2344554332 334444321 135788999999
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
+|++++.+ +.++++++|+++..+|........+++||+||+|+.|||++....
T Consensus 68 ~d~~~l~~-~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 68 PSIDEVMR-GIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred CCHHHHHH-HHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 99777652 224449999999877654433345778999999999999986543
No 88
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=8.4e-15 Score=109.18 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=86.2
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCc-ccceeeeeeccccCCceeEEEEeeecCce-e-----eccCcceeEE
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSP-ELKCALAMLGYAEEDQTTVLELAYSYGVT-E-----YTKGNAYAQV 226 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~-----~~~~~g~~hi 226 (291)
+.|+.|.|+|++++.+||+++|||++....... ++.....++..+ +..+++..+.... + ...++|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987655432 223445566642 4566666543221 1 1245788999
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCC---CceEEEec
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPD---GWKTVLVD 280 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~---G~~iel~~ 280 (291)
+|.|+|++++++++ .++|+++..+|..... +++.+++.||+ |+.|||+|
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGA-GGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccC-CCCEEEEEecCCCceEEEEecC
Confidence 99999999999999 9999999988764444 34555555555 99999986
No 89
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.62 E-value=5.5e-15 Score=110.90 Aligned_cols=114 Identities=23% Similarity=0.272 Sum_probs=79.4
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecc-
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD- 232 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d- 232 (291)
|.||.+.|+|++++.+||+++|||++..... ...++..+ +..+.+.............++.|++|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 5799999999999999999999999764321 11223332 345555332221111123477899999975
Q ss_pred -hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 233 -VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 -~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
++++++++ +++|+++..++....+ +++.+||+||+|+.|||.+..
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 66776776 9999998755543333 468899999999999998854
No 90
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.62 E-value=8.9e-15 Score=114.25 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|++|.|+|++++.+||+++|||++........+.....++...+. ...+.+..... ....+++|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRDPA----GARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecCCC----CCCCCceEEEEECC
Confidence 4689999999999999999999999998765433222222344543221 23343322111 12346899999998
Q ss_pred chH---HHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 232 DVY---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 d~~---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
|.+ ++.++| ++.|+++..+|........+++|++||+|+.|||++.
T Consensus 79 ~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 754 455555 9999998877765544334579999999999999886
No 91
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=1e-14 Score=112.72 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=81.4
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee-eccCcceeEEEEEecc
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~~v~d 232 (291)
++|+.+.|+|++++.+||+++|||++..+.. + .+.+...+. ..+..+.+........ .....++.|++|.|+|
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d 75 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPD 75 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECCC
Confidence 6899999999999999999999999876543 1 222333211 2246677655322211 2233578999999998
Q ss_pred ---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 233 ---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 ---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
++++.++| +++|+++. .+.... ..+++||+||+|+.|||+...
T Consensus 76 ~~dvd~~~~~L----~~~Gv~~~-~~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 76 DEELEAWKERL----EALGLPVS-GIVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred HHHHHHHHHHH----HHCCCCcc-cccccc--cEEEEEEECCCCcEEEEEECC
Confidence 66677777 99999864 333332 357899999999999999854
No 92
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.62 E-value=1.5e-14 Score=104.59 Aligned_cols=108 Identities=22% Similarity=0.265 Sum_probs=75.1
Q ss_pred EEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHHHHH
Q 022840 29 YRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKMVE 108 (291)
Q Consensus 29 l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~~ 108 (291)
|.|+|++++++||+++|||++..... . ...+..+..-..-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----D--YVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----S--EEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----C--eEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987322 1 233332211000112222211 112234577899999999999999
Q ss_pred HHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 109 NIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
+|+++|+++..+|...++|.. .+++.||+||.|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999998888888777755 488999999999985
No 93
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.61 E-value=1.3e-14 Score=107.25 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.+.|+|++++.+||+++||+++..+.+ ...++...+......+.+.. ...+++.|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEee-------CCCCceEEEEEEcC
Confidence 568999999999999999999999999876532 12334322222234444432 12458899999998
Q ss_pred c---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+ ++++.+++ +++|+++...+.. ++ .+..+||+||+|+.||+...
T Consensus 72 ~~~~v~~~~~~l----~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 72 SPEALERRVAAL----EASGLGIGWIEGD-PG-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred CHHHHHHHHHHH----HHcCCccccccCC-CC-CcceEEEECCCCCEEEEEEe
Confidence 5 45555555 9999987543322 22 35689999999999999864
No 94
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.61 E-value=2.5e-14 Score=122.83 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=83.7
Q ss_pred CCCCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCe-eEEEeccCCCCcceEEEEeecCCCCcccCCCC-ce
Q 022840 17 PKKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY-SNAFLGFGPEQSYFVVELTYNYGVTSYDIGTG-FG 94 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~ 94 (291)
+.+.+++|+||+|.|+|++++.+||+++|||++......+++.. ...|+..+.... .+.+... .+.| +.
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~g~~~ 209 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAH--DIAFVGD-------PEPGKLH 209 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCc--ccceecC-------CCCCceE
Confidence 34568999999999999999999999999999865543333321 344554332111 1211111 1234 88
Q ss_pred EEEEEECC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 95 HLAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 95 ~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
|+||.|+| +++++++|+++|+++..+|.....+...++||+||+||.|||..
T Consensus 210 Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 210 HVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99999986 55578899999999876665443222336899999999999983
No 95
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.61 E-value=3.9e-14 Score=103.23 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=78.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHH
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
+..|.|+|++++++||+++|||++... .+ ...++..+. .....+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 457899999999999999999997532 11 123333222 2233344432211 12245699999999999
Q ss_pred HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 106 MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
++++|+++|+++..++...++|.+. +++.||+||.|+|.+.
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWGVRR-FFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCceEE-EEEECCCCCEEEEEEc
Confidence 9999999999988877776776554 7899999999999875
No 96
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.61 E-value=2e-14 Score=104.84 Aligned_cols=109 Identities=23% Similarity=0.404 Sum_probs=75.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE--CCH
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT--EDV 103 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v--~d~ 103 (291)
||.|.|+|++++++||+++|||++..... . ..++..+ ...+.+....... ..+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999865431 1 3344432 1233333222111 1234678999999 479
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 104 YKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
+++++++.++|+++........++.. .+|++||+|+.|||+..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGR-SIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCce-EEEEECCCCCEEEEEeC
Confidence 99999999999997643332222233 47899999999999854
No 97
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.61 E-value=1.7e-14 Score=108.23 Aligned_cols=117 Identities=25% Similarity=0.292 Sum_probs=84.3
Q ss_pred eEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchH
Q 022840 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 234 (291)
+|+.+.|+|++++.+||+++||+++......+ +.....++..++. +..+.+.... ..+++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 48999999999999999999999987554322 2234455554322 3344443311 1468899999999865
Q ss_pred ---HHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 235 ---KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
+.++++ .++|+++...|...+..+.++++|+||+|+.|||.+....
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 455556 9999999887765554446789999999999999985543
No 98
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=3.1e-14 Score=105.44 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=81.7
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee----eccCcceeEEEEEecc
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE----YTKGNAYAQVAISTDD 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hi~~~v~d 232 (291)
-.|.|+|++++.+||+++||+++.......++......+..+ ...+.+........ ....++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999987655333332222233332 22333332221111 1123466899999999
Q ss_pred hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
++++++++ .++|+++..+|...++ +.+.++++||+|+.|+|.+
T Consensus 79 ~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 99999999 9999999998877665 4688999999999999975
No 99
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.60 E-value=2.7e-14 Score=105.66 Aligned_cols=109 Identities=26% Similarity=0.399 Sum_probs=77.0
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE--
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT-- 100 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v-- 100 (291)
+|+|+.|.|+|++++.+||+++|||++..... . ..++..+ .. .+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~--~~--~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG--DL--WLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC--CE--EEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 57999999999999999999999999865422 1 2344433 22 2222221111 1234678999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
+|+++++++|+++|+++..++.. .+ . .+||+||+||.|||++..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~-~-~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG-D-SFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc-c-EEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 22 2 478999999999999754
No 100
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.60 E-value=2.2e-14 Score=106.37 Aligned_cols=117 Identities=22% Similarity=0.333 Sum_probs=82.9
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCc---eeeccCcceeEEEE
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV---TEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~g~~hi~~ 228 (291)
.++.|+.+.|+|++++.+||+++|||+......... . ..+..+ ...+.+...... .....++|..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~--~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVG--R--KALRFG----SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccCC--c--eEEEeC----CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 358999999999999999999999999875532111 2 223322 134555432221 11223468899999
Q ss_pred Eecc-hHHHHHHHHHHHHHhCCEeecCCcccCC--CCceEEEEECCCCceEEEec
Q 022840 229 STDD-VYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~d-~~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DP~G~~iel~~ 280 (291)
.+++ ++++.+++ +++|+++..+|....+ ..++.+||+||+|+.||+++
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 88888888 9999999887765432 23578999999999999986
No 101
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=1.4e-14 Score=107.02 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=79.5
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEee----ecCceeeccCcceeEEEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAY----SYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~g~~hi~~ 228 (291)
++.++.+.|.|++++.+||+++|||++...... . ..+.. ...+.+.. .....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~~----~-~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFGE----N-VTFEG------GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccCc----e-EEEec------cceeccchhhhccCCcccccccCCceEEEE
Confidence 578899999999999999999999997643211 1 11111 11111110 000111122345579999
Q ss_pred EecchHHHHHHHHHHHHHhCC-EeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 229 STDDVYKSAEVVNLVTQELGG-KITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~-~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
.|+|+++++++| +++|+ ++..+|...++ +.+.++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 99986 78888877665 56899999999999999874
No 102
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.59 E-value=2e-14 Score=106.83 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=79.5
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCccc-ceeeeeeccccCCceeEEEEeeecCcee--eccCcceeEEEEEe
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPEL-KCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~v 230 (291)
+.|+.|.|.|++++.+||+++|||++..+....+. .....++.......+..++|........ .....++.|++|.|
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~v 81 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFSV 81 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEEc
Confidence 68999999999999999999999998765432221 1112222211112244566655332211 11234678999999
Q ss_pred cc---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 231 DD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
+| ++++.+++ +++|+++..++.. .+++.+||+||+|++|||+
T Consensus 82 ~~~~~~~~~~~~~----~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 82 PSEASLDAWRERL----RAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred CCHHHHHHHHHHH----HHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 85 45555555 9999998764433 2468899999999999985
No 103
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.59 E-value=5.2e-14 Score=120.37 Aligned_cols=122 Identities=24% Similarity=0.352 Sum_probs=84.7
Q ss_pred CCCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEE
Q 022840 18 KKDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 18 ~~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~ 97 (291)
.+.+++++||+|.|+|++++.+||+++|||++........+.....++..+.... .+.+... .+.+++|+|
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~Hia 201 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVH--DIALTNG-------NGPRLHHIA 201 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcC--ceEeecC-------CCCceeeEE
Confidence 4568999999999999999999999999999875543333333344544322111 2222211 235789999
Q ss_pred EEECC---HHHHHHHHHHcCCe--eecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 98 IATED---VYKMVENIRAKGGN--VTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 98 ~~v~d---~~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
|+|+| ++++.++|+++|++ +...|.....+...++|++||+|+.|||+...
T Consensus 202 f~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 202 YWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 99998 55568899999987 54444433333334588999999999998754
No 104
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.59 E-value=2.5e-14 Score=105.66 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=78.6
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecc
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d 232 (291)
++.|++|.|+|++++.+||+++|||++..+... ...++..++ .+..+.+... ..++..|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~-----~~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPED-----GALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCC-----CeEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 588999999999999999999999997654211 123344322 2445555321 13577899999975
Q ss_pred ---hHHHHHHHHHHHHHhCCEeecCCccc--CCCCceEEEEECCCCceEEEecc
Q 022840 233 ---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 233 ---~~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+++..++| +++|+++...|... ....++++||+||||+.|||+.-
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 66666666 99999998755321 22234789999999999999864
No 105
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=1.9e-14 Score=106.89 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=78.9
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeec--------C--ceeeccCcce
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSY--------G--VTEYTKGNAY 223 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~g~ 223 (291)
+.|+.+.|+|++++.+||+++|||++....... .+.. +..+ ...+.+.... . +......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~--~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG--DYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC--cEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 468999999999999999999999975432211 1211 1111 1122111100 0 0000112344
Q ss_pred eEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
.|++|.|+|++++++++ +++|+++..+|...++ +.+.++++||+|+.|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 68999999999999999 9999999988877665 46789999999999999874
No 106
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=4.1e-14 Score=106.16 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=78.0
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccc-eeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
..+.|+.+.|+|++++.+||+++||+++..+....... ....++..+ +..+.+...... ..+++.|++|.|
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~----~~~~~~Hiaf~v 74 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDSL----QERTYNHIAFKI 74 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCCC----CCCCceEEEEEc
Confidence 36899999999999999999999999875543221100 000111111 245555432111 124689999999
Q ss_pred c--chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 231 D--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~--d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+ +++++.++| +++|+++..+. ......++.+||+||+|+.|||...
T Consensus 75 ~~~~ld~~~~~l----~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 75 SDSDVDEYTERI----KALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred CHHHHHHHHHHH----HHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecC
Confidence 7 566666666 99999876433 2233246899999999999999864
No 107
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.59 E-value=2e-14 Score=106.28 Aligned_cols=114 Identities=25% Similarity=0.207 Sum_probs=79.4
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..... . ..++..........+.+.. ...++..|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD--D----RIYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC--C----eEEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 468999999999999999999999999865422 1 2233211111233344322 11357899999995
Q ss_pred ---chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 232 ---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
|+++..+++ +++|+++...|.......++.+|+.||+|+.||+....
T Consensus 70 ~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 566666666 99999987765443333357899999999999998643
No 108
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.59 E-value=8.9e-14 Score=101.12 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=78.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHHH
Q 022840 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYKM 106 (291)
Q Consensus 27 v~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~ 106 (291)
..|.|+|++++++||+++|||++..... .. ...++..+ . ..+.+......... ...+..|++|.++|++++
T Consensus 2 ~~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 2 PVLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--G--AQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred CEEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--C--EEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHH
Confidence 3689999999999999999999876532 11 23444432 2 33444433222111 234566899999999999
Q ss_pred HHHHHHcCCe-eecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 107 VENIRAKGGN-VTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 107 ~~~l~~~G~~-~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
.++++++|+. +..++...+++.. .++++||+|+.|+|+|
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 9999999998 5666666666644 4789999999999975
No 109
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=4.9e-14 Score=105.21 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=83.2
Q ss_pred CceEEEeeeCCccccHHHHHHhc---CCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee---eccCcceeEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE---YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~g~~hi 226 (291)
+++||.+.|.|++++.+||+++| ||++..+... . ..+... ..+..+.+........ ...+.|+.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~--~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---G--RSWRAG---DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---C--ceEEec---CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 9998765321 1 122221 1245666655333211 1234678999
Q ss_pred EEEecc---hHHHHHHHHHHHHHhCCEeecCCccc--CCCCceEEEEECCCCceEEEecc
Q 022840 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 227 ~~~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+|.|.| ++++.+++ +++|+++...+... ...+.+.+|++||+|++|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999975 66666777 99999998877642 22346889999999999999853
No 110
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=5.2e-14 Score=104.58 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=80.9
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCc-eeeccCcceeEEEEEec
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-TEYTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~g~~hi~~~v~ 231 (291)
++.|+.|.|+|++++.+||+++|||++..... ...++..++ ....+.+...... .......+..|++|.|.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 68999999999999999999999999876521 123444332 2455555443322 11223457899999998
Q ss_pred c---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchh
Q 022840 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~ 283 (291)
+ ++++++++ +++|+++.. +...+. .+.+|++||+|+.|||....+
T Consensus 74 ~~~~v~~~~~~l----~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 74 SRADLAAALRRL----IELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CHHHHHHHHHHH----HHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 5 55555555 999998754 333333 478999999999999987543
No 111
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.58 E-value=2.5e-14 Score=106.32 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=79.9
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.+.|+|++++.+||+++|||++..+.. ...++..+. .+..+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 468999999999999999999999999865421 123455432 2344444321 145689999998
Q ss_pred c---hHHHHHHHHHHHHHhCCEeecCCcccC--CCCceEEEEECCCCceEEEecchh
Q 022840 232 D---VYKSAEVVNLVTQELGGKITRQPGPIP--GLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~DP~G~~iel~~~~~ 283 (291)
| ++++.+++ +++|+++..++.... ..+.+++||+||||+.||+..++.
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 6 66666667 999999877654211 223567899999999999987653
No 112
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.58 E-value=5.1e-14 Score=104.07 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=83.0
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce--eeccCcceeEEEEEecchH
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT--EYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hi~~~v~d~~ 234 (291)
..+.|.|++++.+||.++||+++.......++......+..+ +..+.+....... +...+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 458899999999999999999987665433333333333332 2345554321110 1112346689999999999
Q ss_pred HHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
++++++ .+.|+++..+|...++ +.+.++++||+|+.|+|.+
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 999999 9999999988875554 5689999999999999987
No 113
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.58 E-value=5.2e-14 Score=104.18 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=76.3
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCC-----CCcccCCCCceEEEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG-----VTSYDIGTGFGHLAI 98 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-----~~~~~~~~g~~~i~~ 98 (291)
++||+|.|+|++++++||+. |||++...... .....+..+. . ..+.+..... ......+.+..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG-G--VRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC-C--EEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99987543211 1123333221 1 2232221110 011112234567888
Q ss_pred EEC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 99 ATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
.+. |+++++++|+++|+++..+|...++|.+. ++|+||+||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRY-AIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEE-EEEECCCCCEEEEe
Confidence 774 89999999999999988888777777653 78999999999986
No 114
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=8.1e-14 Score=103.01 Aligned_cols=113 Identities=27% Similarity=0.420 Sum_probs=78.8
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCC------cccCCCCceEEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT------SYDIGTGFGHLA 97 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~------~~~~~~g~~~i~ 97 (291)
+.+|.|.|+|++++++||+++|||++..+ .++. ..++..++. . .+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR-G--MLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC-c--EEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998753 1222 455555432 2 23333221111 111234778999
Q ss_pred EEE--CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 98 IAT--EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v--~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
|.+ +|++++++++.++|+++...+. ..++.. .++|+||+|+.||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~-~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGR-SLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCee-EEEEECCCCCEEEEec
Confidence 999 5799999999999998766544 233434 3789999999999985
No 115
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.58 E-value=2.2e-14 Score=104.26 Aligned_cols=113 Identities=25% Similarity=0.178 Sum_probs=81.3
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee-eccCcceeEEEEEecc
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~~v~d 232 (291)
|+|+++.|+|++++.+||+++||+.+..+..... ...++..++ ...+.+........ .....+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 5799999999999999999999998765432221 223343322 12455544322211 1124577899999999
Q ss_pred hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEE
Q 022840 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel 278 (291)
++++.+++ +++|+++..++.. ..+++.++++||+|+.|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 99999999 9999999887754 2346789999999999996
No 116
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=4.2e-14 Score=104.94 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=79.5
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.+.|+|++++.+||+++|||++.... +.+.. +..+. +..+.+.... ...+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~--~~~~~---~~~l~~~~~~------~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAV--VKLDN---GVSLDFAQPD------GEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEE--EEcCC---CcEEEEecCC------CCCCcceEEEEeC
Confidence 35789999999999999999999999976532 11211 22111 3445543321 1235589999886
Q ss_pred --chHHHHHHHHHHHHHhCCEeecCCccc------CCCCceEEEEECCCCceEEEecc
Q 022840 232 --DVYKSAEVVNLVTQELGGKITRQPGPI------PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 --d~~~~~~~l~~~~~~~G~~~~~~p~~~------~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
|+++..+++ .+.|+++...|... ...+++.+||+||+|+.|||+++
T Consensus 68 ~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 68 EEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 578888888 99999987766543 12357899999999999999986
No 117
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.2e-13 Score=102.37 Aligned_cols=114 Identities=23% Similarity=0.251 Sum_probs=77.1
Q ss_pred EEEEEEEeCCHHHHHHHHHHh---cCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTEC---FGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~---lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
++||.|.|+|++++++||+++ |||++.... .+. .+.+..... ...+.+........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~--~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPG--AVGYGKGGG--GPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCc--eeEeccCCC--CceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999998 699876542 111 222332211 23344433222111 1222457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCcEEEEE
Q 022840 101 ED---VYKMVENIRAKGGNVTREPGPLKG--MTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DP~G~~iel~ 145 (291)
++ ++++++++.++|+.+..+|...++ .....+||+||+||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998777765543 2222478999999999987
No 118
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.56 E-value=1.4e-13 Score=100.37 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=72.7
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEE--EE
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLA--IA 99 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~--~~ 99 (291)
++|+||.|.|+|++++++||+ .|||++.... + . ..++..+. ....+.+.... ..++.|++ +.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~--~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-G--LELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-c--eEEEecCC--CceEEEeecCC-------CCceeeEEEEeE
Confidence 478999999999999999998 6999986432 1 1 22222221 22223332221 12344544 45
Q ss_pred ECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 100 TEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
++|+++++++|+++|+++..++ ..++.. .+||.||+||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 5899999999999999987654 333333 378999999999998543
No 119
>PRK06724 hypothetical protein; Provisional
Probab=99.56 E-value=4.7e-14 Score=105.11 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCceEEEeeeCCccccHHHHHHhc---CCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEE
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~ 228 (291)
..++|+.|.|+|++++.+||+++| |++..... .+ . . ....+.+...... .....|..|++|
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~-~--~--g~~~l~l~~~~~~--~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY-S--T--GESEIYFKEVDEE--IVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee-e--C--CCeeEEEecCCcc--ccCCCCceeEEE
Confidence 468999999999999999999966 56543211 11 1 0 0112222111010 012347789999
Q ss_pred Ee---cchHHHHHHHHHHHHHhCCEeecCCcccCC--CCceEEEEECCCCceEEEecc
Q 022840 229 ST---DDVYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v---~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DP~G~~iel~~~ 281 (291)
.| ++++++.+++ +++|+++..+|...+. .+.+.+||+||||+.|||+..
T Consensus 70 ~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 70 QAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred ecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 98 5677777777 9999999888865442 234789999999999999865
No 120
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.56 E-value=6.6e-14 Score=101.56 Aligned_cols=120 Identities=28% Similarity=0.365 Sum_probs=89.0
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
+..+.|..|.|+|++++++||.++|||...+..+.....+ ..+...+...+..+. .... ...+...+++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~~gG~l~--~~~~---~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAGAGGGLM--ARPG---SPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCccccceec--cCCc---CCCCCCCEEEEEec
Confidence 5678999999999999999999999999876644433333 333322211122221 1111 11225568999999
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
+|+++.++++ .++|.+++.++...|+ .++.+.+.||.||+|.|.+..
T Consensus 80 ~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999 9999999999998886 489999999999999998753
No 121
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.56 E-value=9.6e-14 Score=104.54 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=82.6
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecc
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d 232 (291)
++.|+.+.|+|++++.+||+++|||++...... ....++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999997654321 1233444321 12345555443222111234578899999998
Q ss_pred hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhh
Q 022840 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~ 285 (291)
++.+. .++.++.++|+++..++. .+ .++.+|++||+|+.|||+...+.+
T Consensus 76 ~~~v~-~~~~~l~~~G~~~~~~~~-~~--~~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 76 LDDLR-DLYERLRAAGITPVWPVD-HG--NAWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred HHHHH-HHHHHHHHCCCCccccCC-CC--ceeEEEEECCCCCEEEEEEcCCCC
Confidence 55422 222344999999876542 22 357899999999999999865544
No 122
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.56 E-value=1.5e-13 Score=99.10 Aligned_cols=112 Identities=31% Similarity=0.410 Sum_probs=82.0
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHH
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
|+++.|+|++++.+||+++|||++...... ......++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998766432 12245555543 234555554332222345578899999999999
Q ss_pred HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEE
Q 022840 106 MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel 144 (291)
++++|.++|+.+..++....++.. .+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGR-VAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcE-EEEEECCCCcEEeC
Confidence 999999999988776653333333 47899999999985
No 123
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=8.6e-14 Score=103.38 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=76.3
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCC------CCcc-cCCCCceEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG------VTSY-DIGTGFGHL 96 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~-~~~~g~~~i 96 (291)
+.+|+|.|+|++++++||++ |||+......... ..++..++ ...+.+..... .... ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36899999999999999987 8998764322211 22232221 22344432211 0000 122345689
Q ss_pred EEEEC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 97 AIATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
+|.|+ ++++++++++++|+++..+|...+++ . .+||+|||||.|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~-~-~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGFM-Y-GRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCce-E-EEEEECCCCCEEEEEE
Confidence 99997 58899999999999988877766653 2 3689999999999974
No 124
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=1e-13 Score=102.98 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=72.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCC----Ccc-cCCCCceEEE--E
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGV----TSY-DIGTGFGHLA--I 98 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~----~~~-~~~~g~~~i~--~ 98 (291)
||+|.|+|++++++||+++|||++..... . ...+..+ ...+.+.+...... ... ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999854311 1 2223222 22333333221100 000 1112445664 5
Q ss_pred EECCHHHHHHHHHHcCCeeecCCccCCC---CceEEEEEECCCCcEEEEEE
Q 022840 99 ATEDVYKMVENIRAKGGNVTREPGPLKG---MTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~DP~G~~iel~~ 146 (291)
.++|+++++++|+++|+++..+|..... +....+||+|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6689999999999999998876654221 11234889999999999974
No 125
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.55 E-value=1.8e-13 Score=101.05 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=75.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHH
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
...|.|+|++++++||++ |||++...... ...++..+ ...+.+...... .......+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 468999999999999999 99998654321 13444432 224445433211 112234579999999999
Q ss_pred HHHHHHHcCCeee-------cCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 106 MVENIRAKGGNVT-------REPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
++++|+++|+++. .++...++|.+. ++|+||+||.|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~-~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMRE-FALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeE-EEEECCCCCEEEeecC
Confidence 9999999999742 334444566554 8899999999999874
No 126
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=2.1e-13 Score=100.63 Aligned_cols=112 Identities=26% Similarity=0.415 Sum_probs=76.8
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECC--
Q 022840 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED-- 102 (291)
Q Consensus 25 ~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d-- 102 (291)
.|+.|.|+|++++.+||+++||++..... ++ . ..|.. .. ..+.+.+...... ...+..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~---~~-~-~~~~~-~~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR---DD-Y-AKFLL-ED--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc---CC-e-eEEEe-cC--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 69999999999999999999999875432 11 1 22222 22 1233333322111 11478899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCccCC-CCceEEEEEECCCCcEEEEEEcC
Q 022840 103 -VYKMVENIRAKGGNVTREPGPLK-GMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
+++++++|.++|+++..++.... ++....+|++||+||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999876554332 12223488999999999999753
No 127
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.55 E-value=1.1e-13 Score=101.54 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=80.8
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.+.|.|++++.+||+++|||++..... ...++..+. ..+..+.+... ...++.|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 368999999999999999999999999876532 123444331 12344444331 1357899999998
Q ss_pred c---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 232 D---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+ +++..+++ +++|+++...|...++ +++.+|++||+|+.||+...
T Consensus 67 ~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHL----EAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEc
Confidence 4 55555555 9999999887754444 46889999999999999865
No 128
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.54 E-value=1.1e-13 Score=101.85 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=79.2
Q ss_pred eEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce-e----eccCcceeEEEEE
Q 022840 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-E----YTKGNAYAQVAIS 229 (291)
Q Consensus 155 ~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~----~~~~~g~~hi~~~ 229 (291)
.+..|.|+|++++.+||.++|||++..... .+ ..+..++. ...+.+....... + ...+.+ .|++|.
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 73 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDSD----WY--VSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFE 73 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEeccC----cE--EEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEE
Confidence 357899999999999999999999875421 11 22322221 2444443211110 0 112233 589999
Q ss_pred ecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 230 TDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 230 v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
|+|++++.+++ .++|+++..+|...++ +.+.++++||+|+.|||+|
T Consensus 74 v~did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 74 VDDVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred ECCHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 99999999999 9999998888876655 4688999999999999986
No 129
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=2.4e-13 Score=99.35 Aligned_cols=108 Identities=23% Similarity=0.279 Sum_probs=77.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc-ccCCCCceEEEEEECC---
Q 022840 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-YDIGTGFGHLAIATED--- 102 (291)
Q Consensus 27 v~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~g~~~i~~~v~d--- 102 (291)
+.|.|+|++++++||+++|||++... ... ...+...+ . ..+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~----~~~--~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVEL----SPT--FALFVLGS-G--VKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCC----CCc--eEEEEeCC-C--cEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 67999999999999999999997643 112 22333222 2 2344443332211 1233467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
++++++++.++|+++..++...++|. .++|+||+||.||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88999999999999988887777764 368999999999986
No 130
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.54 E-value=1.6e-13 Score=100.01 Aligned_cols=108 Identities=21% Similarity=0.224 Sum_probs=78.6
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHH
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~ 236 (291)
..+.|+|++++.+||+++|||++.... + ...++...+ ..+..+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 468899999999999999999975321 1 122233222 1234455433211 123457999999999999
Q ss_pred HHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 237 AEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
.+++ ++.|+++..+|...++ +.+.+|++||+|+.|+|+++
T Consensus 72 ~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 9999 9999999888876554 45789999999999999975
No 131
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.54 E-value=1.7e-13 Score=100.09 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=76.9
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.++.|+.+.|+|++++.+||++ |||++..+.. + ..++..++. ....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGT-DPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCC-ccEEEEccc-------CCcCcccEEEEEEC
Confidence 3689999999999999999999 9999765431 1 123443222 222222111 11357889999999
Q ss_pred chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
|.+++.+.+ +..|.++...+. .++ +++.+||+||+|+.|||+.
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEe
Confidence 998888888 888998775443 333 4688999999999999975
No 132
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.53 E-value=1.4e-13 Score=99.40 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=75.1
Q ss_pred eeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHHHH
Q 022840 159 LRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSAE 238 (291)
Q Consensus 159 l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~~ 238 (291)
|.|+|++++.+||+++|||++....+. ......+... ......+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPD----YVDFSLGFRF--HDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETS----EEEEEETEEE--EEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCC----eEEEEeccch--hhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 679999999999999999998873321 2222222100 011222222111 11234577999999999999999
Q ss_pred HHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 239 VVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 239 ~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
++ +++|+++..+|...++ +.+.+++.||+|+.|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 9999999998887666 468999999999999986
No 133
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.53 E-value=1.5e-13 Score=101.28 Aligned_cols=113 Identities=26% Similarity=0.316 Sum_probs=78.9
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.+|.|+.|.|+|++++.+||+++|||++..+.. .+ .++..++. ....+.+.. ...+++.|++|.++
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS-EHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC-ccEEEEecc-------CCCCCCceEEEEeC
Confidence 358999999999999999999999999765422 12 23332222 233333321 12346789999995
Q ss_pred ---chHHHHHHHHHHHHHhCCEeecCCccc-CCCCceEEEEECCCCceEEEecch
Q 022840 232 ---DVYKSAEVVNLVTQELGGKITRQPGPI-PGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---d~~~~~~~l~~~~~~~G~~~~~~p~~~-~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
++++..+++ +++|+++..+|... ...+++.++|+||+|+.|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 566666666 99999988776432 122467899999999999998754
No 134
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.53 E-value=3.1e-13 Score=115.13 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=82.1
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCC-C--eeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEE
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEE-K--YSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHL 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i 96 (291)
...+|+||+|.|+|++++.+||+++|||++........+ + ....|+..++... .+.+... ....+++|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHH--SLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcc--eEEEecC------CCCCceEEE
Confidence 367999999999999999999999999998654322111 1 1345665543222 2222211 123478999
Q ss_pred EEEECCHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 97 AIATEDVYK---MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
+|.|+|+++ +.++|+++|+ ....+.....+...++||+||+|++||+...
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 999988776 7999999999 4444443333344468899999999999753
No 135
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.53 E-value=1.2e-13 Score=100.71 Aligned_cols=108 Identities=23% Similarity=0.324 Sum_probs=74.1
Q ss_pred EEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec--ch
Q 022840 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD--DV 233 (291)
Q Consensus 156 ~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~--d~ 233 (291)
|+.+.|+|++++.+||+++|||++..+... ..++..+ ...+.+....... ....+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~------~~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK------EAYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc------eeEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 789999999999999999999998654321 1222222 2445543322211 12346789999995 56
Q ss_pred HHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 234 YKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+++.+++ .++|+++...+...+ ..++.+|++||+|+.|||..
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccC-CCceEEEEECCCCCEEEEEe
Confidence 6666666 999999865433222 23688999999999999985
No 136
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.52 E-value=2.7e-13 Score=98.55 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=78.7
Q ss_pred EeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHHH
Q 022840 158 MLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~~ 237 (291)
.|.|+|++++.+||+++|||++..... .. ...++..+ +..+.+....+..+. ...+..|++|.++|+++..
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 588999999999999999999876543 11 22334422 345555443322111 2346679999999999999
Q ss_pred HHHHHHHHHhCCE-eecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 238 EVVNLVTQELGGK-ITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 238 ~~l~~~~~~~G~~-~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+++ ++.|++ +..++...++ +.+.++++||+|+.|||+|
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999 999999 5666655544 4588999999999999986
No 137
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.52 E-value=2.2e-13 Score=98.74 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=75.8
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc--ccCCCCceEEEEEECC
Q 022840 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHLAIATED 102 (291)
Q Consensus 25 ~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~g~~~i~~~v~d 102 (291)
+||+|.|+|++++++||+++||++.......+....+..++..++.. ..+++.++..... ...+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999987766666666777777765422 6788877655432 2377799999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 022840 103 VYKMVENIRAKGGNVTREP 121 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~ 121 (291)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999976543
No 138
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=2.8e-13 Score=100.07 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=77.8
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce------eeccCcceeEEE
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT------EYTKGNAYAQVA 227 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~g~~hi~ 227 (291)
+.+|.|.|.|++++.+||+++|||++..+. ++.+ .++..++. ..+.+....... +.....+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 1212 33443332 233333221110 111234778999
Q ss_pred EEec--chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 228 ISTD--DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 228 ~~v~--d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
|.++ |++++++++ .++|+++...+. . ..+++.+|++||+|+.|||++.
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~-~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-W-PRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-C-CCCeeEEEEECCCCCEEEEecC
Confidence 9984 677777777 999999876554 2 2346889999999999999863
No 139
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.51 E-value=1.3e-12 Score=94.91 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=87.2
Q ss_pred CCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCC-CCcceEEEEeecCCCCcccCCCCceEEE
Q 022840 19 KDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGP-EQSYFVVELTYNYGVTSYDIGTGFGHLA 97 (291)
Q Consensus 19 ~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~g~~~i~ 97 (291)
++...+.|..|.++|++++++||.++|||+....... +...++.+..+. ..... +.- .....++.+...+.
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~~~~y~~f~~~~~~~gG~-l~~-----~~~~~p~~~~~~iy 76 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--GEMRYAVFPADGAGAGGG-LMA-----RPGSPPGGGGWVIY 76 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccC--CCceEEEEECCCccccce-ecc-----CCcCCCCCCCEEEE
Confidence 4567789999999999999999999999998655333 223344443322 11121 110 11111223556788
Q ss_pred EEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 98 IATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
|.|+|+++..+|.+++|.+++.++.+.+++.+ ++.+.||+||.|.|++.
T Consensus 77 ~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~-~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 77 FAVDDIDATLERVVAAGGKVLRPKTEFPGGGR-IAHFVDPEGNRFGLWSP 125 (127)
T ss_pred EecCChHHHHHHHHhcCCeEEecccccCCceE-EEEEECCCCCEEEEeec
Confidence 99999999999999999999999999996555 47899999999999864
No 140
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=6.4e-14 Score=102.94 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=56.6
Q ss_pred eeEEEEeeecCcee-----ecc----CcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCC
Q 022840 203 TTVLELAYSYGVTE-----YTK----GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDG 273 (291)
Q Consensus 203 ~~~l~l~~~~~~~~-----~~~----~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G 273 (291)
...++|+++++... +.. +.|.+||||.|+|++++++++ ++.|+++...|.+ +.-...+|+.||||
T Consensus 87 ~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~l----kekGV~f~Kk~~d--Gk~K~iaF~~dpDg 160 (170)
T KOG2944|consen 87 NAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERL----KEKGVRFKKKLKD--GKMKPIAFLHDPDG 160 (170)
T ss_pred cCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHH----HHhCceeeecCCC--ccccceeEEECCCC
Confidence 45678887776532 222 238999999999999999999 9999997776644 11125799999999
Q ss_pred ceEEEecch
Q 022840 274 WKTVLVDNE 282 (291)
Q Consensus 274 ~~iel~~~~ 282 (291)
++||+..++
T Consensus 161 ywiei~~~s 169 (170)
T KOG2944|consen 161 YWIEIELES 169 (170)
T ss_pred CeEEEeecC
Confidence 999998754
No 141
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=3.5e-13 Score=99.87 Aligned_cols=117 Identities=22% Similarity=0.243 Sum_probs=75.5
Q ss_pred ceEEEeeeCCccccHHHHHHh---cCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe
Q 022840 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v 230 (291)
+.|+.|.|+|++++.+||+++ ||+++..+. .+. .+ .+...+ ....+.+....+..+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~~--~~-~~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GPG--AV-GYGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CCc--ee-EeccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 689876442 111 12 223221 2344444433221111 123457999999
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCC--CCceEEEEECCCCceEEEe
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPG--LNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~DP~G~~iel~ 279 (291)
+|. +.++++.+++.++|+.+...|...+. .+.+.+||+||+|+.|||+
T Consensus 73 ~~~-~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSR-EAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCH-HHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 873 22233334449999998887765543 2345789999999999996
No 142
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.50 E-value=3.3e-13 Score=99.79 Aligned_cols=108 Identities=30% Similarity=0.345 Sum_probs=75.4
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEe--
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAIST-- 230 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v-- 230 (291)
++.|+.+.|+|++++.+||+++|||++....+. ..++..+ ...+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~~------~~~~~~~----~~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWDK------GAYLEAG----DLWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecCC------ceEEecC----CEEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 378999999999999999999999997654321 1223322 223333221111 1245778999998
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+|++++++++ .++|+++..++.. .++.+||+||+|+.|||...
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC----CccEEEEECCCCCEEEEEeC
Confidence 4667777777 9999998665432 14689999999999999874
No 143
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=6.3e-13 Score=97.04 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=72.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHHH
Q 022840 26 HAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
...|.|+|++++++||++ |||++.... . ...++..+ ... +.+....... ..+..+++|.|+|+++
T Consensus 4 ~~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~--~~~~l~~~--~~~--l~l~~~~~~~----~~~~~~~~~~v~did~ 68 (113)
T cd08356 4 RPFIPAKDFAESKQFYQA-LGFELEWEN----D--NLAYFRLG--NCA--FYLQDYYVKD----WAENSMLHLEVDDLEA 68 (113)
T ss_pred eeccccccHHHHHHHHHH-hCCeeEecC----C--CEEEEEcC--CEE--EEeecCCCcc----cccCCEEEEEECCHHH
Confidence 356889999999999988 999987542 1 14556543 222 3333211111 1234578999999999
Q ss_pred HHHHHHHcCCeee-----cCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 106 MVENIRAKGGNVT-----REPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 106 ~~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
++++|+++|+++. .++...++|.+. ++|+|||||+|+|.+
T Consensus 69 ~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~-f~~~DPdGn~~~~~~ 113 (113)
T cd08356 69 YYEHIKALGLPKKFPGVKLPPITQPWWGRE-FFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHHcCCcccccceecCccccCCCcEE-EEEECCCccEEEeeC
Confidence 9999999998642 234444566554 889999999999864
No 144
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=4.7e-13 Score=97.79 Aligned_cols=108 Identities=27% Similarity=0.264 Sum_probs=75.7
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee-eccCcceeEEEEEecc---
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE-YTKGNAYAQVAISTDD--- 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~~~v~d--- 232 (291)
+.|.|+|++++.+||+++||+++..... .+...... + +..+.+.......+ .....+.+|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6789999999999999999999764321 13222222 2 23455544332211 1123467899999986
Q ss_pred hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
++++.+++ .++|+++..+|...++ ++.++|+||+||.||+.
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 55556666 9999999988877655 57899999999999986
No 145
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.49 E-value=8.2e-13 Score=97.43 Aligned_cols=111 Identities=22% Similarity=0.231 Sum_probs=75.7
Q ss_pred eEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecc--
Q 022840 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDD-- 232 (291)
Q Consensus 155 ~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d-- 232 (291)
.|+.|.|+|++++.+||+++||++...+.. + .. .+.. .+. ...+.+...... ..+++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~---~-~~-~~~~-~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD---D-YA-KFLL-EDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC---C-ee-EEEe-cCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 689999999999999999999998765431 1 11 2222 121 233333221111 11588999999988
Q ss_pred -hHHHHHHHHHHHHHhCCEeecCCcccC-CCCceEEEEECCCCceEEEecc
Q 022840 233 -VYKSAEVVNLVTQELGGKITRQPGPIP-GLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 233 -~~~~~~~l~~~~~~~G~~~~~~p~~~~-~~~~~~~~~~DP~G~~iel~~~ 281 (291)
+++..+++ .++|+++...|.... ....+.+|++||+|+.|||+++
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 45555565 999999987765432 2225789999999999999974
No 146
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=4.4e-13 Score=99.55 Aligned_cols=112 Identities=25% Similarity=0.270 Sum_probs=74.2
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCc-----eee--ccCcceeEE
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV-----TEY--TKGNAYAQV 226 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~~~--~~~~g~~hi 226 (291)
+.++.|.|+|++++.+||++ |||++......... . .+. .++ ...+.+...... .+. +...+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~~--~-~~~-~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEKA--A-CMV-ISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCCe--E-EEE-ECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36789999999999999976 99987643322221 1 111 111 234444332110 000 123345799
Q ss_pred EEEecc---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~~~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
+|.|++ ++++++++ +++|+++..+|...++ ++.+||+|||||.|||+
T Consensus 73 ~f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 73 SLSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVL 122 (124)
T ss_pred EEeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEE
Confidence 999984 66666666 9999999888766554 57899999999999997
No 147
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.48 E-value=6.1e-13 Score=98.20 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=75.5
Q ss_pred EEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHH
Q 022840 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 ~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~ 235 (291)
...|.|+|++++.+||++ |||++..+... ....+..+ +..+.+....... ......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 457899999999999999 99998654321 12333322 3455554432111 12234689999999999
Q ss_pred HHHHHHHHHHHhCCEee-------cCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 236 SAEVVNLVTQELGGKIT-------RQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~-------~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
.+++| +++|+++. ..+...++ +.+.++|+||+|+.|||.|.
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 99999 99999853 23333333 57889999999999999884
No 148
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.6e-13 Score=107.55 Aligned_cols=127 Identities=37% Similarity=0.639 Sum_probs=106.9
Q ss_pred CCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcc-----------cceeeeeeccccCCceeEEEEeeecCceeecc
Q 022840 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPE-----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTK 219 (291)
Q Consensus 151 ~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 219 (291)
-.+.-|+++.|.|.+++.+||+++||+.+.+....+. +++.-.+++++..+.|+.++|+.+.+...|.-
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 3578899999999999999999999999987655443 67888899999999999999999999988999
Q ss_pred CcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhhhhhhhc
Q 022840 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDFLKELQS 290 (291)
Q Consensus 220 ~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~~~~~~~ 290 (291)
|+++.|+++.++|+-+.++.+ ...|.+ ..+...+++.||||+.|++.++.+..+.+|+
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~ 152 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQ 152 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEE
Confidence 999999999999888877777 555531 1224578999999999999998877777664
No 149
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.47 E-value=1.1e-12 Score=97.11 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=74.0
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecC-----ceeeccCcceeEEEE
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYG-----VTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-----~~~~~~~~g~~hi~~ 228 (291)
+.|+++.|+|++++.+||++ |||++....... ....+..++ +..+.+..... ........+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999965 999875432211 111122111 12333321110 000012234568888
Q ss_pred Eec---chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 229 STD---DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~---d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
.+. |++++++++ +++|+++..+|...++ +.+.++++||+|+.|||+
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 765 788888888 9999999888876655 457899999999999986
No 150
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.46 E-value=6.8e-13 Score=98.46 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=72.4
Q ss_pred EEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCc----eee-ccCcceeEEE--E
Q 022840 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV----TEY-TKGNAYAQVA--I 228 (291)
Q Consensus 156 ~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~----~~~-~~~~g~~hi~--~ 228 (291)
|+.|.|+|++++.+||+++|||++..... ....+...+ ....+.+...... ... ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999754321 111122111 1222222211100 000 0112445665 4
Q ss_pred EecchHHHHHHHHHHHHHhCCEeecCCcccC---CCCceEEEEECCCCceEEEec
Q 022840 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIP---GLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~---~~~~~~~~~~DP~G~~iel~~ 280 (291)
.++|+++++++| +++|+++..+|.... ..+.+.+|++||||+.|||..
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 667888888888 999999988775421 123588999999999999974
No 151
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.46 E-value=1.4e-12 Score=95.09 Aligned_cols=105 Identities=23% Similarity=0.256 Sum_probs=72.1
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeE--EEEEe
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQ--VAIST 230 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~h--i~~~v 230 (291)
+|.|+.|.|+|++++.+||. .|||++..+.. ...+...+ ..+..+.+... ...++.| +.+.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAG--NDHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecC--CCceEEEeecC-------CCCceeeEEEEeEh
Confidence 58999999999999999997 69999865421 12222211 12344444321 1223444 45556
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+|++++++++ +++|+++...+.. . +.+.+||+||+||.|||..
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~~--~-~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPPG--A-DPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCCc--C-CCCEEEEECCCCCEEEEec
Confidence 8899998888 9999998776522 2 2467999999999999985
No 152
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.45 E-value=9.8e-13 Score=94.79 Aligned_cols=112 Identities=29% Similarity=0.384 Sum_probs=82.2
Q ss_pred EEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHH
Q 022840 156 QVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 ~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~ 235 (291)
|+.+.|+|++++.+||.++||+++........ ....++..+ ...+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78899999999999999999999876653211 233444432 456666554332111234678999999999988
Q ss_pred HHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEE
Q 022840 236 SAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel 278 (291)
..+++ .++|+++..++.. ...+.+.+++.||+|+.|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 88888 9999998877652 23347899999999999986
No 153
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.45 E-value=5.1e-13 Score=96.85 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=75.8
Q ss_pred eEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee--eccCcceeEEEEEecc
Q 022840 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~~~v~d 232 (291)
+||++.|+|++++++||.++||+.+..........++..++..++. ...++|+++.+... ...+.|++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999987766655555566666665432 27899988665532 2367899999999999
Q ss_pred hHHHHHHHHHHHHHhCCEeecCC
Q 022840 233 VYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p 255 (291)
++++.++| +++|+++...+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 99999988765
No 154
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=3.7e-12 Score=93.85 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=75.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCC------CCcccCCCCceEEEEEE
Q 022840 27 AVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYG------VTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 27 v~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~g~~~i~~~v 100 (291)
|.|.|+|++++.+||+++|||++..+ ... ...++..+ ...+.+..... ......+.+..+++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~---~~~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD---SND--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc---CCC--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 78999999999999999999998654 111 23445432 23344433211 01111222334566655
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 101 ---EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
+|++++++++.+.|+++..++...++|... ++++||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGYS-GYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCceE-EEEECCCCCEEEEee
Confidence 689999999999999988777766665443 789999999999975
No 155
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=2.3e-12 Score=94.04 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=72.1
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchHHH
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~~~ 236 (291)
..|.|+|++++.+||++ |||++....+ ...++..+ +..+.+....... ..+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~----~~~l~l~~~~~~~----~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLG----NCAFYLQDYYVKD----WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcC----CEEEEeecCCCcc----cccCCEEEEEECCHHHH
Confidence 46889999999999987 9999876532 12334432 2334343211111 12335789999999999
Q ss_pred HHHHHHHHHHhCCEeec-----CCcccCCCCceEEEEECCCCceEEEec
Q 022840 237 AEVVNLVTQELGGKITR-----QPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~~-----~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+++| +++|+++.. ++...++ +.+.++|+|||||.|+|.+
T Consensus 70 ~~~l----~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHI----KALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHH----HHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 9999 999987542 3333333 5789999999999999864
No 156
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.3e-12 Score=96.13 Aligned_cols=124 Identities=33% Similarity=0.513 Sum_probs=81.2
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCC--------C-------CcceEEEEeecCCCC
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGP--------E-------QSYFVVELTYNYGVT 85 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--------~-------~~~~~l~~~~~~~~~ 85 (291)
-..+.|..+.++|+.++..||++++|+.+.......+..+...+++... . .....+++.++-+..
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 3566888899999999999999998888775543332222222222100 0 011235555543322
Q ss_pred c-----cc----CCCCceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCce-EEEEEECCCCcEEEEEEc
Q 022840 86 S-----YD----IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTT-HFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ~-----~~----~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~~DP~G~~iel~~~ 147 (291)
. +. .+.|.+||||.|+|++++.++|+++|+++...+. .|.. ..+|+.||||+.|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~---dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK---DGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC---CccccceeEEECCCCCeEEEeec
Confidence 1 21 2248999999999999999999999999654443 2222 358999999999998753
No 157
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.35 E-value=7.6e-12 Score=92.18 Aligned_cols=110 Identities=25% Similarity=0.248 Sum_probs=74.1
Q ss_pred EEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCc------eeeccCcceeEEEEEe
Q 022840 157 VMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGV------TEYTKGNAYAQVAIST 230 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~~~~~g~~hi~~~v 230 (291)
|.|.|.|++++.+||+++|||++..+. .. ...++..+ +..+.+...... .....+.+-.|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999986551 11 12334432 344555432110 0111122334566655
Q ss_pred ---cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 231 ---DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ---~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+|+++.++++ ++.|+++..+|...++ +++.++++||+|++|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 5777777777 9999999887766554 4788999999999999974
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.30 E-value=2.9e-11 Score=96.41 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=73.6
Q ss_pred ceeEEEEEEEeC--CHHHHHHHHHHhcCCEEeeEeecCC--CCeeEEEeccCCCCcceEEEEeecCCC--Cc-------c
Q 022840 21 KRRFLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPE--EKYSNAFLGFGPEQSYFVVELTYNYGV--TS-------Y 87 (291)
Q Consensus 21 ~~~i~hv~l~v~--D~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~~~~--~~-------~ 87 (291)
+.+++||++.|+ |++++.+||+++|||+.......++ .+.....+... ...+.+++..+... .. .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHH
Confidence 368999999999 9999999999999999877654333 23444455532 23455666653321 11 1
Q ss_pred cCCCCceEEEEEECCHHHHHHHHHHcCCeeecCCc
Q 022840 88 DIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24779999999999999999999999999876654
No 159
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=80.51 Aligned_cols=118 Identities=24% Similarity=0.276 Sum_probs=75.7
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc--ccCCCC--ceE--
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTG--FGH-- 95 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~g--~~~-- 95 (291)
+-+-|++|.|+|++++++||.++||++.-.. .. .|+.+.--...+++.+........ ...+.+ ..|
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRs----td----~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRS----TD----TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccc----cc----eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccce
Confidence 4568999999999999999999999986322 11 122111112233343332221111 112222 344
Q ss_pred EEEEECCHHHHHHHHHHcCCeeecCCccCC---CCceEEEEEECCCCcEEEEEEc
Q 022840 96 LAIATEDVYKMVENIRAKGGNVTREPGPLK---GMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~DP~G~~iel~~~ 147 (291)
+.+.++|.-++.+||+++|+....+|.-.- .|.....|+.||.||.+|+-.-
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 567789999999999999999877775542 1223347899999999998643
No 160
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.20 E-value=3.1e-10 Score=91.76 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=86.3
Q ss_pred CCCCCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce-eeccCcceeEEE
Q 022840 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT-EYTKGNAYAQVA 227 (291)
Q Consensus 149 ~~~~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~g~~hi~ 227 (291)
..+..+..+.|+|+|++++..||++++|+++..+... ...+..++ ...+.|.+..+.. +.+...|+.|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC---EEEEEEEeCCCCCCCCccccceeeee
Confidence 3466788999999999999999999999999876432 22333332 3455655533332 223557999999
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchh
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~ 283 (291)
|-+++-.++.+.| .++.+.|..+. ++.++.- .-.+||.||+||-||++...+
T Consensus 77 fLlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 77 FLLPTREDLARVL-NHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred eecCCHHHHHHHH-HHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 9999844444444 66699998875 4455433 356999999999999998643
No 161
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.18 E-value=1.3e-10 Score=92.62 Aligned_cols=99 Identities=20% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCceEEEeeeC--CccccHHHHHHhcCCeeeeeccCcc--cceeeeeeccccCCceeEEEEeeecCc--e-------eec
Q 022840 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPE--LKCALAMLGYAEEDQTTVLELAYSYGV--T-------EYT 218 (291)
Q Consensus 152 ~~~~~v~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-------~~~ 218 (291)
.+++|+++.|+ |++++.+||+++|||++..+....+ .......+.. +.....++|..+... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~--~~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLAS--PDGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEEC--CCCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 35899999999 9999999999999999877654332 2233344442 224667777664431 1 122
Q ss_pred cCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCc
Q 022840 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 219 ~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.++|++||||.|+|++++++++ +++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4689999999999999999999 999999998873
No 162
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.15 E-value=3.2e-10 Score=99.29 Aligned_cols=104 Identities=21% Similarity=0.352 Sum_probs=74.5
Q ss_pred CCCCceeEEEEEEEeC--CHHHHHHHHHHhcCCEEeeEeecCCC--CeeEEEeccCCCCcceEEEEeecCC---CC----
Q 022840 17 PKKDKRRFLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPEE--KYSNAFLGFGPEQSYFVVELTYNYG---VT---- 85 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~--D~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~---~~---- 85 (291)
+.+.+.+++||++.|+ |++++..||+++|||++......... ......+... ...+.+++..+.. ..
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~--~g~~~i~L~ep~~~~~~s~i~~ 229 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP--DGKVKIPLNEPASGKDKSQIEE 229 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC--CCcEEEEEeccCCCCCCCHHHH
Confidence 4467899999999999 99999999999999998765543221 2222233321 2245566665321 11
Q ss_pred --cccCCCCceEEEEEECCHHHHHHHHHHcCCeeecCCc
Q 022840 86 --SYDIGTGFGHLAIATEDVYKMVENIRAKGGNVTREPG 122 (291)
Q Consensus 86 --~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
....|.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 230 fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 230 FLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 1124789999999999999999999999999876553
No 163
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=99.14 E-value=2.9e-09 Score=75.08 Aligned_cols=113 Identities=24% Similarity=0.396 Sum_probs=69.0
Q ss_pred EEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECCHH
Q 022840 25 LHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d~~ 104 (291)
.+.+|.|+|.+.+..||++.|||+++.+... .++++.......++|+..+............+++|.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEna------~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEENA------LAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEETT------EEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeecccc------EEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 5678999999999999999999999876543 7777765556667777776665556566668999999999977
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEE-EECCCCcEEEEEEcC
Q 022840 105 KMVENIRAKGGNVTREPGPLKGMTTHFAF-VKDPDGYIFELIQRG 148 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~-~~DP~G~~iel~~~~ 148 (291)
+ .+.|.++|..+.. ...+..+ |+| ..+|+|+++.|....
T Consensus 76 E-Ie~LLar~~~~~~---l~kg~~g-yAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 E-IEALLARGAQYDR---LYKGKNG-YAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp H-HHHHHHC-S--SE---EEE-SSS-EEEEEE-TT--EEEEE--S
T ss_pred H-HHHHHhcccccce---eEEcCCc-eEEEEECCCCCEEEEEEcC
Confidence 7 4556666665321 2222222 455 689999999987653
No 164
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.09 E-value=8.3e-09 Score=76.93 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=73.9
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCEEeeEeec----------CCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceE
Q 022840 27 AVYRV-GDLDRTIKYYTECFGMELLRKRDV----------PEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 27 v~l~v-~D~~~~~~FY~~~lG~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~ 95 (291)
.-|.+ .|.+++++||+++||+++...... .++......+.+++ . .+.+......... .+....+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g--~--~l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG--Q--RLMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC--E--EEEEEcCCCCCCC-CCCCCEE
Confidence 34666 899999999999999998875432 12333455555442 1 2323322111111 1223457
Q ss_pred EEEEECC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEE
Q 022840 96 LAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 96 i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel 144 (291)
+++.|+| +++++++|.+.| ++..++...++|.+. ..++||+|+.|+|
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 8898886 778889987655 888888888888764 7899999999987
No 165
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.03 E-value=3.5e-08 Score=73.04 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=85.3
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeeEeecCC----------CCeeEEEeccCCCCcceEEEEeecCCCCcccCCC-Cce
Q 022840 27 AVYRVG-DLDRTIKYYTECFGMELLRKRDVPE----------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGT-GFG 94 (291)
Q Consensus 27 v~l~v~-D~~~~~~FY~~~lG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-g~~ 94 (291)
.-|..+ |.++|++||+++||.++.......+ +...+.-+.++. ..|.+....+......+. ...
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g----~~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGG----STIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECC----EEEEEecCCCccCcccCCCeeE
Confidence 346777 9999999999999999988776666 455566666542 123233222111112222 234
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 95 HLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
.|.+.++|++++++++.+.|+++..++....||.+ +..++||.|+.|-|....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r-~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDR-YGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccc-eEEEECCCCCEEEEecCc
Confidence 57788889999999999999999999999999877 477999999999987654
No 166
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.01 E-value=1.7e-09 Score=80.32 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=73.0
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCe---eEEEeccCCCCcceEEEE--------eecCCCC-cccC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKY---SNAFLGFGPEQSYFVVEL--------TYNYGVT-SYDI 89 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~l~~--------~~~~~~~-~~~~ 89 (291)
++++||++.|+|++++++||+++||++............ ...+.............. ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 578999999999999999999999999987654332211 111111110000000000 0000000 0011
Q ss_pred C-CCceEEEEEECC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEE
Q 022840 90 G-TGFGHLAIATED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQ 146 (291)
Q Consensus 90 ~-~g~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~ 146 (291)
+ .+..|+++.+.+ ...........|..+..... ..++. .+||+||||+.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 247799999988 56666677777887654433 33332 5899999999999874
No 167
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.01 E-value=5e-09 Score=74.26 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=73.4
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcc-------cCCCCce
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSY-------DIGTGFG 94 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-------~~~~g~~ 94 (291)
++...|.|.|+|++++++||+. |||+.-....... ....+.. + .+.+.|.....-..+ .....-.
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~-~---ni~vMLL~~~~fq~F~~~~i~dt~~s~ev 73 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIIS-D---NIFVMLLEEARFQTFTKRQIADTTKSREV 73 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEe-c---cEEEEEeccHHhhhhcccccccccCCceE
Confidence 4567899999999999999998 9998765433221 1222221 1 122222221111111 1112234
Q ss_pred EEEEEEC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcC
Q 022840 95 HLAIATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 95 ~i~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~ 148 (291)
-||+.+. +++++.++..++|.+...++.....-.+ ..|.|||||.||++.-.
T Consensus 74 li~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg--~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 74 LISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYG--RSFQDPDGHVWEFLWMD 128 (133)
T ss_pred EEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccc--eeeeCCCCCeEEEEEeC
Confidence 5788885 4889999999999998666655443222 35999999999998643
No 168
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.99 E-value=7.1e-09 Score=81.68 Aligned_cols=147 Identities=23% Similarity=0.294 Sum_probs=83.2
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc-------c-----cCCC
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS-------Y-----DIGT 91 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-------~-----~~~~ 91 (291)
|+|+++.|+|++++.++|++.|||++.....-+..+.....+.+++ . .||+....+... . ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 7999999999999999998889999988776666566666666653 2 566665322111 0 1467
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCeeecCCccCCCCceE--EEEEECC----CCcEEEEEEcCC-C---------CCCce
Q 022840 92 GFGHLAIATEDVYKMVENIRAKGGNVTREPGPLKGMTTH--FAFVKDP----DGYIFELIQRGP-T---------PEPLC 155 (291)
Q Consensus 92 g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~--~~~~~DP----~G~~iel~~~~~-~---------~~~~~ 155 (291)
|+..+|+.++|+++..++|+++|+... .+....++... .+++.++ .+..-.+++... . ...|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 888999999999999999999997621 11111122211 2344553 244555554332 1 13489
Q ss_pred EEEeeeCCccccHHHHHHhc
Q 022840 156 QVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 156 ~v~l~v~D~~~~~~Fy~~~l 175 (291)
.+.+.++|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999998865
No 169
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.97 E-value=8e-09 Score=73.25 Aligned_cols=118 Identities=23% Similarity=0.219 Sum_probs=71.9
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeec------CceeeccCcceeEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSY------GVTEYTKGNAYAQV 226 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~------~~~~~~~~~g~~hi 226 (291)
+...|.|.|.|++++.+||+. |||.......+... ..++- ++. -+.+-|.+.+ .....+..+.-..+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a---~~mi~--~~n-i~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDA---ACMII--SDN-IFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccccc---eeEEE--ecc-EEEEEeccHHhhhhcccccccccCCceEEE
Confidence 456889999999999999976 99987665443321 11111 111 1222221111 01111223344678
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
++.+.+ ...++.+-++..+.|+....+|..... .+..-|.|||||.||++=
T Consensus 76 ~ls~~s-~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 76 SLSAGS-REEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EeccCc-HHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEE
Confidence 998876 333333334449999999777765433 566779999999999974
No 170
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=1.7e-08 Score=74.74 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=80.7
Q ss_pred EeeeC-CccccHHHHHHhcCCeeeeeccCcc----------cceeeeeeccccCCceeEEEEeeecCceeeccCcce-eE
Q 022840 158 MLRVG-DLGRSIKFYEKALGMKLLRTIDSPE----------LKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAY-AQ 225 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~-~h 225 (291)
-|.+. |.+++++||.++||.++..+....+ +++.-..+..+ +..|-+....+......+++. ..
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 46667 9999999999999999888775544 22222222222 333333332222221222333 45
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 226 i~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
|.+.++|+++.++++ .+.|.++..++....+ +.++..++||.|+.|.|....
T Consensus 81 l~~~~~d~da~f~~a----~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERA----AAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHH----HhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCc
Confidence 777888888888888 9999999999988777 578999999999999998754
No 171
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.95 E-value=1.7e-08 Score=75.29 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=69.8
Q ss_pred Eeee-CCccccHHHHHHhcCCeeeeeccC----------cccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEE
Q 022840 158 MLRV-GDLGRSIKFYEKALGMKLLRTIDS----------PELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQV 226 (291)
Q Consensus 158 ~l~v-~D~~~~~~Fy~~~lG~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi 226 (291)
.|.+ .|.+++++||.++||+++...... ..+.+.-..+..+ +..+-+......... ...+-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4566 899999999999999998765531 1122222222222 233433332221111 12234578
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
++.|+|.++ ++++++++.+.| ++..+|...++ +.+..+++||+|+.|+|.
T Consensus 79 ~i~~~~~e~-v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEE-ADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHH-HHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 999987333 333334436655 88888877765 578999999999999974
No 172
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.89 E-value=1.8e-08 Score=70.21 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=74.0
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee--eccCcce--eE--E
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE--YTKGNAY--AQ--V 226 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~g~--~h--i 226 (291)
.+.|..+.|.|++++.+||-++||....++.+ .-+..-+++ +..++.+........ ...+.++ -| +
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd---~wvdfDfyG-----HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD---TWVDFDFYG-----HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc---eEEEeeecc-----cEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 35789999999999999999999998654322 112222333 122222222111110 0012222 23 5
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCccc---CCCCceEEEEECCCCceEEEecc
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPI---PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~---~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
.+.++|..++.++| +++|+.+.-+|.-+ ..+..+.+++.||+||.+|+-..
T Consensus 76 Vl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHH----HHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 56677888888888 99999988888532 12236789999999999998653
No 173
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.87 E-value=1.8e-08 Score=88.02 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=72.9
Q ss_pred CceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCC-----CCeeEEEeccCCCCcceEEEEeecCC---C-C---c-
Q 022840 20 DKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPE-----EKYSNAFLGFGPEQSYFVVELTYNYG---V-T---S- 86 (291)
Q Consensus 20 ~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~l~~~~~~~---~-~---~- 86 (291)
.+.+|+||++.|.+++.+..||+++|||+........+ .+.+...+..+. ..+.+++..+.. . . .
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eF 254 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTY 254 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHH
Confidence 47899999999999999999999999998875433322 123455555432 235566665432 1 1 1
Q ss_pred --ccCCCCceEEEEEECCHHHHHHHHHHc----CCeeecCC
Q 022840 87 --YDIGTGFGHLAIATEDVYKMVENIRAK----GGNVTREP 121 (291)
Q Consensus 87 --~~~~~g~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 121 (291)
...|.|++||||.|+||.+++++|+++ |+++...|
T Consensus 255 L~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 255 LEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 235789999999999999999999999 99876543
No 174
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.85 E-value=1.5e-08 Score=75.24 Aligned_cols=121 Identities=23% Similarity=0.270 Sum_probs=72.7
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccc---eeeeeeccccC--CceeEE------EEeeecCce-eeccC
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK---CALAMLGYAEE--DQTTVL------ELAYSYGVT-EYTKG 220 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~l------~l~~~~~~~-~~~~~ 220 (291)
.+.|+.+.|+|++++.+||+++||+++..+....... ....+...... ...... ......... .....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5789999999999999999999999988765432211 11111111000 000000 000000000 01111
Q ss_pred -cceeEEEEEecc---hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 221 -NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 221 -~g~~hi~~~v~d---~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
.+..|+++.+++ ........ ...|..+...+. ... +..+|++||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 247899999998 55555555 778888766544 222 338999999999999974
No 175
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.74 E-value=8.5e-08 Score=71.37 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=79.8
Q ss_pred CCceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCc--ccCCCCceEE
Q 022840 19 KDKRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTS--YDIGTGFGHL 96 (291)
Q Consensus 19 ~~~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~~~~~g~~~i 96 (291)
+.+.++++|.+.++|.++...+++ .|||+.+.+.... ....++.| ...++|...+...... ..+|++++-|
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG--~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQG--DINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEET--TEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeC--CEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 678999999999999888888886 5999998764322 24444533 4555553322111111 2378999999
Q ss_pred EEEECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCC
Q 022840 97 AIATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~ 150 (291)
+|+|+|.++++++..+.|++...++... +...+.-++.++|.++.|++....
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 9999999999999999999866554322 223345689999999999987643
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.70 E-value=1.7e-07 Score=79.34 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=70.3
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
..+..||+|.|+|++++++||+++|++.. . .++. ...+ + ..-+.+-+.+. .. ....-.-+|+.+
T Consensus 245 ~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-F----sde~--a~cm--~--dtI~vMllt~~-D~----~~~~evLl~Ls~ 308 (357)
T PRK01037 245 SPKTFSVVLEVQDLRRAKKFYSKMFGLEC-W----DGDK--LFLL--G--KTSLYLQQTKA-EK----KNRGTTTLSLEL 308 (357)
T ss_pred CCceEEEEeeeCCHHHHHHHHHHHhCCCC-C----CCCc--cccc--c--CcEEEEEecCC-CC----CCcceEEEEecc
Confidence 35678999999999999999999988864 2 2221 1122 2 22222222222 11 122334578888
Q ss_pred CC---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 101 ED---VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
++ +|+++++..++|.....++..... . --|.|||||.||++..
T Consensus 309 ~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~---rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 309 ECEHDFVRFLRRWEMLGGELGEQADGHFP-L---RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCcccccC-c---ceeECCCCCEEEEEEE
Confidence 65 889999999999976555554443 2 2499999999999854
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.50 E-value=1.2e-06 Score=74.19 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=68.6
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~ 231 (291)
.+..||+|.|.|++++.+||+++|++.. .. ... .... + +.-..+-+.+. + +....-.-+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs--de~---a~cm-~----dtI~vMllt~~-D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD--GDK---LFLL-G----KTSLYLQQTKA-E----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC--CCc---cccc-c----CcEEEEEecCC-C----CCCcceEEEEeccC
Confidence 5678999999999999999999988885 21 111 1111 1 11222222222 1 12234467889888
Q ss_pred chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
+ .+.++.+-++..++|++...+|.++.. .--|.|||||.||++
T Consensus 310 S-re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~ 352 (357)
T PRK01037 310 C-EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVS 352 (357)
T ss_pred C-HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEE
Confidence 7 444444445559999977665554322 566999999999997
No 178
>PRK10148 hypothetical protein; Provisional
Probab=98.37 E-value=6.4e-05 Score=57.19 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=76.4
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeeEeec--------------------CCCCeeEEEeccCCCCcceEEEEeecCCCC
Q 022840 27 AVYRVG-DLDRTIKYYTECFGMELLRKRDV--------------------PEEKYSNAFLGFGPEQSYFVVELTYNYGVT 85 (291)
Q Consensus 27 v~l~v~-D~~~~~~FY~~~lG~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 85 (291)
.-|..+ |.++|.+||+++||.++...... .++......|.+++ . .+.+.... ..
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g--~--~lm~sD~~-~~ 79 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAG--S--DIMMSDAI-PS 79 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECC--E--EEEEECCC-CC
Confidence 345554 89999999999999987654211 12344455565542 1 22222211 11
Q ss_pred cccCCCCceEEEEEECCHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCCCC
Q 022840 86 SYDIGTGFGHLAIATEDVYK---MVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 86 ~~~~~~g~~~i~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~~~ 151 (291)
....+ ...++++.++|.++ ++++| +.|.++..++....||.+ +..++||.|+.|.|......|
T Consensus 80 ~~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~-~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 80 GKAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHG-FGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred cCCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhc-cEEEECCCCCEEEEEecCCCC
Confidence 11111 24567888888776 55666 588999999999899876 488999999999998766554
No 179
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=73.01 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=72.4
Q ss_pred CceeEEEEEEEeC--CHHHHHHHHHHhcCCEEeeEeecCCC--CeeEEEeccCCCCcceEEEEeecCCCCc-------cc
Q 022840 20 DKRRFLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPEE--KYSNAFLGFGPEQSYFVVELTYNYGVTS-------YD 88 (291)
Q Consensus 20 ~~~~i~hv~l~v~--D~~~~~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~~~~-------~~ 88 (291)
.+..|+|++..|. .++.+..||+++|+|+.....+.++. +.+...+....+ .+.|.+.......+ ..
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G--~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCG--KVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCC--cEEeecccCCCchhHHHHHHHHh
Confidence 4579999999886 99999999999999998876655442 333333433222 34444433322222 12
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeecCCc
Q 022840 89 IGTGFGHLAIATEDVYKMVENIRAKGGNVTREPG 122 (291)
Q Consensus 89 ~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
.|.|+.||+|.++||-++.++|+++|++....|.
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 6889999999999999999999999999776554
No 180
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.20 E-value=2.9e-06 Score=70.02 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=86.6
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce--e-----eccCccee
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT--E-----YTKGNAYA 224 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~-----~~~~~g~~ 224 (291)
.+++|+.+.|.+...+..||...|||++....+...+........ ...+...+-+....++. . ...+.|+-
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~a--lr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHA--LRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHH--hhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 458999999999999999999999999887654433211111111 11112222222211111 1 22456788
Q ss_pred EEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCC--ceEEEEECCCCceEEEecchhhhh
Q 022840 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLN--TKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 225 hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~--~~~~~~~DP~G~~iel~~~~~~~~ 286 (291)
-+||.|+|++++.+.+ .++|+.+..+|-...... .+++.+..+.-....++++..++.
T Consensus 94 dvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g 153 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKG 153 (381)
T ss_pred ceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccc
Confidence 9999999999999999 999999999986543322 366778888777777777765543
No 181
>PRK10148 hypothetical protein; Provisional
Probab=98.20 E-value=5.9e-05 Score=57.41 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=70.1
Q ss_pred EEeeeC-CccccHHHHHHhcCCeeeeecc---C-----------------cccceeeeeeccccCCceeEEEEeeecCce
Q 022840 157 VMLRVG-DLGRSIKFYEKALGMKLLRTID---S-----------------PELKCALAMLGYAEEDQTTVLELAYSYGVT 215 (291)
Q Consensus 157 v~l~v~-D~~~~~~Fy~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 215 (291)
..|... +.+++.+||+++||.++..... . ..+.+.-..+..+ +..|-+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~~ 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPSG 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCCc
Confidence 345564 8999999999999988764431 0 0122222222222 2222222211111
Q ss_pred eeccCcceeEEEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecc
Q 022840 216 EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 216 ~~~~~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~ 281 (291)
.... .-.++.+.++|.+++ +++.+. .+.|+++..++...++ +.++..++||.|+.|.|...
T Consensus 81 -~~~~-~~~~l~l~~~d~ee~-~~~~~a-La~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 -KAHY-SGFTLVLDTQDVEEG-KRWFDN-LAANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred -CCCC-CeEEEEEECCCHHHH-HHHHHH-hhCCCEEEecchhcch-hhccEEEECCCCCEEEEEec
Confidence 0111 235677788885553 444444 3689999999988777 56889999999999999764
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.19 E-value=5.4e-05 Score=53.78 Aligned_cols=114 Identities=28% Similarity=0.389 Sum_probs=65.7
Q ss_pred eEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCce--eeccCcceeEEEEEecc
Q 022840 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVT--EYTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~g~~hi~~~v~d 232 (291)
.+-+++|.|-+...+||.++|||++..... .+.+++ +......+.|-++++.. ...+..-+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg--~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILG--DQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE---TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEec--CCCCceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 456799999999999999999999876532 345555 33334444444544332 12233467899999998
Q ss_pred hHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 233 VYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 ~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
...++.| .++|.+.... .-+.+++.+-..+|.|..|.+....+.
T Consensus 74 -~~EIe~L----Lar~~~~~~l---~kg~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 74 -PKEIEAL----LARGAQYDRL---YKGKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp -HHHHHHH----HHC-S--SEE---EE-SSSEEEEEE-TT--EEEEE--S-G
T ss_pred -HHHHHHH----Hhccccccee---EEcCCceEEEEECCCCCEEEEEEcCCH
Confidence 7777788 7777664332 223346777789999999999876544
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.05 E-value=9.9e-05 Score=55.09 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=76.1
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCcee----eccCcceeEEEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTE----YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~g~~hi~~ 228 (291)
.+.+|.+.+++..+...++ +.|||+..-+..... ..+ +-+ +...+-+...+.... ...|+++--++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrsk~--v~l-~rQ-----G~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLF-TALGFQPVARHRSKD--VTL-YRQ-----GDINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHH-CCCCEEEECCECCCS--EEE-EEE-----TTEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHH-HHhCcceEEecCCcc--eEE-EEe-----CCEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 4788999999987788877 569999887654433 223 233 134444444322211 225789999999
Q ss_pred EecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
.|+|..+++++. .++|.+....|.... .-...-++-++|..+-|+++...
T Consensus 80 rV~Da~~A~~rA----~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 80 RVDDAAAAYERA----VALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EES-HHHHHHHH----HHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--SS
T ss_pred EeCCHHHHHHHH----HHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999 999999888764322 24667899999999999997544
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.67 E-value=0.00016 Score=56.87 Aligned_cols=87 Identities=24% Similarity=0.296 Sum_probs=49.9
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccce--eeeeeccccCCceeEEEEeeecCceee------------cc
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKC--ALAMLGYAEEDQTTVLELAYSYGVTEY------------TK 219 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~~------------~~ 219 (291)
|+|+.+.|+|++++.++|.+.|||.+......+..+. .+.+++ + . .|||....+..+. ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~--~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG--D---G-YLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S--S---S-EEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC--C---c-eEEEEEeCCcccccccccceechhhcC
Confidence 6899999999999999998889999887665544222 344443 2 2 6777653221111 13
Q ss_pred CcceeEEEEEecchHHHHHHHHHHHHHhCCE
Q 022840 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGK 250 (291)
Q Consensus 220 ~~g~~hi~~~v~d~~~~~~~l~~~~~~~G~~ 250 (291)
+.|+.++++.++|+++..+++ ++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 568899999999999999999 999975
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.95 E-value=0.026 Score=41.00 Aligned_cols=99 Identities=21% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCccccHHHHHHhcCCeeeee-ccCc------ccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEecchH
Q 022840 162 GDLGRSIKFYEKALGMKLLRT-IDSP------ELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~d~~ 234 (291)
.+.++|.+||.++||-..... ...+ .+++....+..+ +..+-..... .....+++ ..+++.++| .
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~~-~sl~i~~~~-~ 82 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGNN-ISLCIECDD-E 82 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----TT-EEEEEEESS-H
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCCc-EEEEEEcCC-H
Confidence 688999999999999432221 1111 112222222221 2223222222 12223344 568888888 6
Q ss_pred HHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 235 KSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
+..++++.+|.+.|- +. .++..++|..|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~---------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ---------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE---------TC--CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC---------cc--ceeEEEEeCCCCEEEeC
Confidence 667777777676664 22 37899999999999986
No 186
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.86 E-value=0.0023 Score=44.55 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=43.4
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeeecCceeeccCcceeEEEEEec--
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYSYGVTEYTKGNAYAQVAISTD-- 231 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~g~~hi~~~v~-- 231 (291)
+..+.++|+| +++..||.++||-..- ..+.+....+++ +.+ +....=++..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G~D----L~~-------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQGPD----LTI-------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---CC----GSS--------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccCCc----ccc-------CCCcEEeeEEEEEEecCc
Confidence 5678999999 8899999998873321 233444422211 110 0001127788999998
Q ss_pred -chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEe
Q 022840 232 -DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 232 -d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~ 279 (291)
|+.++.+.+ ++. .+.-++ ..+++.+.||++..|+|.
T Consensus 65 ~Dl~~L~~~l----e~~--~~fidK------k~k~l~~~Dps~IElWFe 101 (101)
T PF14507_consen 65 FDLAALKSHL----EEQ--EFFIDK------KEKFLVTSDPSQIELWFE 101 (101)
T ss_dssp --HHHHHHHT----TTS---EE--T------T-SEEEEE-TTS-EEEEE
T ss_pred ccHHHHHHHh----ccc--ceEecC------CceEEEEECCcceEEEeC
Confidence 455555555 663 333332 257899999999999873
No 187
>PF15067 FAM124: FAM124 family
Probab=96.65 E-value=0.021 Score=45.89 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=62.3
Q ss_pred eEEEEEEEeC--CHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEecc-CCCCcceEEEEeec-CCCCcccCCCCceEEEE
Q 022840 23 RFLHAVYRVG--DLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF-GPEQSYFVVELTYN-YGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 23 ~i~hv~l~v~--D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~-~~~~~~~~~~g~~~i~~ 98 (291)
.+--++++|+ |.+.+.+||+-+|+-+....... ..++.+ ...+..+.+.+..- .+..+ ......-+.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~------FC~F~lys~~~~~iQlsLK~lp~~~~p--~p~esavLqF 199 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKED------FCFFTLYSQPGLDIQLSLKQLPPGMSP--EPTESAVLQF 199 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC------cEEEEEecCCCeEEEEEeccCCCCCCc--ccccceEEEE
Confidence 5667899999 99999999999999987654332 333332 23333444444332 11111 1123346899
Q ss_pred EECCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEE
Q 022840 99 ATEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFEL 144 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel 144 (291)
.|.|+.+++--|-.--.++ ..++ --..|||||.|-|
T Consensus 200 ~V~~igqLvpLLPnpc~PI-------S~~r---WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPCSPI-------SETR---WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCcccc-------cCCc---ceeeCCCCCEecc
Confidence 9999988765543222221 1111 1379999999854
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.52 E-value=0.19 Score=36.50 Aligned_cols=96 Identities=20% Similarity=0.385 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHhcCCEEe-eEeecCC------CCeeEEEeccCCCCcceEEEEeecCCCCcccCCCCceEEEEEECC--
Q 022840 32 GDLDRTIKYYTECFGMELL-RKRDVPE------EKYSNAFLGFGPEQSYFVVELTYNYGVTSYDIGTGFGHLAIATED-- 102 (291)
Q Consensus 32 ~D~~~~~~FY~~~lG~~~~-~~~~~~~------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~i~~~v~d-- 102 (291)
.|.++|.+||+++||-..+ .....++ +......+.+++ ..+...... .....+ ....+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g----~~lm~~D~~--~~~~~~-~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG----QKLMASDGG--PDFPFG-NNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT----EEEEEEEES--TS-----TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC----eEEEEECCC--CCCCCC-CcEEEEEEcCCHH
Confidence 6899999999999985433 2222221 233344444431 122222221 111222 23577888887
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 103 -VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
++.++++|.+-|- ++ . .+..+.|--|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 5556777777764 22 3 3688999999999875
No 189
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.92 E-value=0.15 Score=35.63 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=39.8
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCCcceEEEEeecCCCC--c-ccCCCCceEEEE
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQSYFVVELTYNYGVT--S-YDIGTGFGHLAI 98 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~--~-~~~~~g~~~i~~ 98 (291)
..+..+.|+|+| +++++||+++||-+. + +.+.+.+..++. . ....-++..+-|
T Consensus 4 F~~e~i~LNV~d-~~~~~fy~~~f~~~~------~-----------------~~l~f~ea~G~DL~~~~~~twDLe~Lkf 59 (101)
T PF14507_consen 4 FEFESIELNVPD-AKSQSFYQSIFGGQL------P-----------------FFLTFQEAQGPDLTIENNETWDLEMLKF 59 (101)
T ss_dssp EEE-EEEEEE-T--T---S--H---HHH------T-----------------TTEEEEE---CCGSS-TTSBSSEEEEEE
T ss_pred eEEEEEEEeCCC-hhHHHHHHhccccCC------C-----------------ceEEEeeccCCccccCCCcEEeeEEEEE
Confidence 357789999999 889999999886211 0 011111111110 0 011115667889
Q ss_pred EEC---CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEE
Q 022840 99 ATE---DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFE 143 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~ie 143 (291)
.|+ |+.++.++|.+.++-+. ....+..+.||.+..+-
T Consensus 60 ~V~~~~Dl~~L~~~le~~~~fid--------Kk~k~l~~~Dps~IElW 99 (101)
T PF14507_consen 60 QVPKDFDLAALKSHLEEQEFFID--------KKEKFLVTSDPSQIELW 99 (101)
T ss_dssp EES-S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEE
T ss_pred EecCcccHHHHHHHhcccceEec--------CCceEEEEECCcceEEE
Confidence 998 57788888887444321 12224668999996554
No 190
>PF15067 FAM124: FAM124 family
Probab=94.09 E-value=0.49 Score=38.24 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCceEEEeeeC--CccccHHHHHHhcCCeeeeeccCcccceeeeeeccccCCceeEEEEeee-cCceeeccCcceeEEEE
Q 022840 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTIDSPELKCALAMLGYAEEDQTTVLELAYS-YGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~~v~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~-~~~~~~~~~~g~~hi~~ 228 (291)
..+.-+++.|+ |.+.+.+||+-+|+-++.....+ +. +|.=+.......++.|-.. .+..+ ....-..+.|
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~----FC-~F~lys~~~~~iQlsLK~lp~~~~p--~p~esavLqF 199 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKED----FC-FFTLYSQPGLDIQLSLKQLPPGMSP--EPTESAVLQF 199 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC----cE-EEEEecCCCeEEEEEeccCCCCCCc--ccccceEEEE
Confidence 45777889998 99999999999999887544322 22 2222223323333333222 22211 1223367899
Q ss_pred EecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEE
Q 022840 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTV 277 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~ie 277 (291)
.|.|+-.++.-| -+.. .|- +...+-..|||||.|=
T Consensus 200 ~V~~igqLvpLL-----Pnpc--------~PI-S~~rWqT~D~DGNkIL 234 (236)
T PF15067_consen 200 RVEDIGQLVPLL-----PNPC--------SPI-SETRWQTEDYDGNKIL 234 (236)
T ss_pred EecchhhhcccC-----CCCc--------ccc-cCCcceeeCCCCCEec
Confidence 999976665555 1111 111 2234778999999874
No 191
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.12 E-value=9.2 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEec
Q 022840 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 226 i~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~ 280 (291)
+.+.++| .+..++++..+.++|.+ ...+.++.|-.|..|+|+-
T Consensus 81 ~~v~~~~-q~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 81 FQVACDD-QEEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIVP 123 (151)
T ss_pred EEEEcCC-HHHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEcH
Confidence 4445566 77788887777888862 1357899999999999975
No 192
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=81.28 E-value=23 Score=27.87 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=43.6
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCC-----CCcceEEEEeecCCCCcccCCCCceE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGP-----EQSYFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~~~~~~~~~~~~~~~g~~~ 95 (291)
-..++||++.|++.+.+.++-+..+..-..-.... =++..++.+.+.. +..--.+|++++.. ..-+-.|.-|
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~-INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~--K~Yp~eGWEH 108 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGELLSENM-INGRPICLFKLNQPLQFGGWSIDCVELPYPKD--KRYPQEGWEH 108 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEE-ETTEEEEEEEEEEEEEETTEEEEEEEEE---S--S--SS-EEEE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhce-eCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC--CCCCCCCceE
Confidence 46789999999999999999999886643332222 1223333332211 01112356665433 2224458999
Q ss_pred EEEEECC-HHHHHHH
Q 022840 96 LAIATED-VYKMVEN 109 (291)
Q Consensus 96 i~~~v~d-~~~~~~~ 109 (291)
|-|.++. .+...++
T Consensus 109 IE~Vip~~~~~~~~~ 123 (185)
T PF06185_consen 109 IEFVIPSDAQTLLEQ 123 (185)
T ss_dssp EEEE--S-GGGHHHH
T ss_pred EEEEecCCHHHHHHH
Confidence 9999964 3333333
No 193
>PRK11700 hypothetical protein; Provisional
Probab=73.14 E-value=44 Score=26.35 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=46.9
Q ss_pred ceeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCC-----CcceEEEEeecCCCCcccCCCCceE
Q 022840 21 KRRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPE-----QSYFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 21 ~~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~~~~~g~~~ 95 (291)
-..++||++.|++.+.+.++-+..+..-..-. ++.=++..++.+.+... -.--.+|++++.. ..-+-.|.-|
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llS-en~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEH 113 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLS-ENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEH 113 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhh-ccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceE
Confidence 46789999999999999999998775532221 11122334444443211 1112345555432 2234558999
Q ss_pred EEEEECC
Q 022840 96 LAIATED 102 (291)
Q Consensus 96 i~~~v~d 102 (291)
|-+.++.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9999964
No 194
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=68.42 E-value=48 Score=25.04 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=44.7
Q ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCC-----CcceEEEEeecCCCCcccCCCCceEEEE
Q 022840 24 FLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPE-----QSYFVVELTYNYGVTSYDIGTGFGHLAI 98 (291)
Q Consensus 24 i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
++|+++.|++.+.+.++-+.++..-..-. ++.=++..++.+.+... -.--.+|+.++.. ..-+-.|.-||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llS-en~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLS-ENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhh-ccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEEE
Confidence 68999999999999999998875533222 11122334444443211 0112345555432 2224558999999
Q ss_pred EECC
Q 022840 99 ATED 102 (291)
Q Consensus 99 ~v~d 102 (291)
.++.
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 9863
No 195
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=67.41 E-value=22 Score=23.78 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC
Q 022840 102 DVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~ 149 (291)
+.+++.+.|.+.|+.+..- ....++... +...|.+|..+++.-.+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~v-e~~~~g~ye-v~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV-EFDDDGCYE-VEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEE-EEcCCCEEE-EEEEECCCCEEEEEEcCC
Confidence 6888999999999965432 221333333 567999999999987654
No 196
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=66.89 E-value=29 Score=25.04 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=34.1
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
|....++.+.+.+.+.++..|+.+ .+|...|....++-..+.|+|+
T Consensus 26 ~d~~~Ld~~~~~Ii~~ak~~g~~v-~GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 26 KNLKSIEKVCADIITGAKEKNLKV-TGPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEe-ECCccCCceeEEEEeeeCCCCC
Confidence 344567888888877778889887 4666777755566678999976
No 197
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=65.40 E-value=15 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=36.7
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 226 i~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
-+|....+|.....+...+...|+.+ .+|...|....++-.++.|+|+
T Consensus 11 ~s~d~~~LD~~~~~Ive~akrtg~~v-~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 11 KSFDHRLLDQVCREIVETAKRTGADV-KGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhCCee-eCCccCCCceEEEEEEeCCCCC
Confidence 34455678888888878778899987 5677788865667778999986
No 198
>PHA02754 hypothetical protein; Provisional
Probab=64.35 E-value=18 Score=22.28 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecch
Q 022840 231 DDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~ 282 (291)
.|...++++++++|.++|+-+..-..-... |.+ ..+...||..+|+.+.+
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~~S-Gdk-IVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAITTS-GDK-IVVITADAIKIELSETE 63 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEEec-CCE-EEEEEcceEEEEEEeee
Confidence 356778889999999999987664433222 233 34445589999998754
No 199
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=62.85 E-value=38 Score=24.49 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=49.9
Q ss_pred eeEEEEEEEeCCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCCC------------cceEEEEeecCCCCcccC
Q 022840 22 RRFLHAVYRVGDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPEQ------------SYFVVELTYNYGVTSYDI 89 (291)
Q Consensus 22 ~~i~hv~l~v~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~l~~~~~~~~~~~~~ 89 (291)
..++-+-+.|++.+.+.+-.++ -||.+..... ....+.+.+ ..+.+...+.- ..
T Consensus 40 ~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dV--------laVEmeD~PG~l~~I~~vl~d~diNldYiYAF-----v~ 105 (142)
T COG4747 40 GDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDV--------LAVEMEDVPGGLSRIAEVLGDADINLDYIYAF-----VT 105 (142)
T ss_pred cCcceEEEEcCChHHHHHHHHH-CCcEEEeeeE--------EEEEecCCCCcHHHHHHHHhhcCcCceeeeee-----ee
Confidence 4566788899999999999998 8997754321 111111100 01111111100 00
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCeeec
Q 022840 90 GTGFGHLAIATEDVYKMVENIRAKGGNVTR 119 (291)
Q Consensus 90 ~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~ 119 (291)
...-.-+.++|+|+|++.+.|+++|++...
T Consensus 106 ek~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 106 EKQKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred cCceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 011124678999999999999999998653
No 200
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=61.87 E-value=18 Score=24.25 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCceEEEecchhh
Q 022840 232 DVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 232 d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~~iel~~~~~~ 284 (291)
+..++.+.+ ++.|+++..-... ..+.+-+..+|.+|..+|+.=.+..
T Consensus 30 ~~~~~~~~l----~~~G~~v~~ve~~--~~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREVEFD--DDGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred CHHHHHHHH----HhcCCceEEEEEc--CCCEEEEEEEECCCCEEEEEEcCCC
Confidence 456777777 9999976553332 2235778899999999999765443
No 201
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.10 E-value=28 Score=21.42 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.2
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCee
Q 022840 92 GFGHLAIATEDVYKMVENIRAKGGNV 117 (291)
Q Consensus 92 g~~~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44668899999999999999999865
No 202
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.70 E-value=57 Score=21.29 Aligned_cols=51 Identities=16% Similarity=-0.046 Sum_probs=31.1
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCC-ceEEEEECCCCceEE
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLN-TKITSFVDPDGWKTV 277 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~-~~~~~~~DP~G~~ie 277 (291)
-+...|=..++.++-..+...|+.+........+.. .-.||++|.+|..+.
T Consensus 5 ev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 5 KVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred EEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 334444344444444444999999988665443311 135999999998773
No 203
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=48.93 E-value=42 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=32.1
Q ss_pred EEEEEE--e---CCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEecc
Q 022840 25 LHAVYR--V---GDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGF 67 (291)
Q Consensus 25 ~hv~l~--v---~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~ 67 (291)
+|++|. . ..++...+++.. ||+.+...-..+..+....++.-
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p 82 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRP 82 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEE
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecC
Confidence 899999 3 266777888886 99999988777766666666654
No 204
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=47.28 E-value=44 Score=23.40 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=33.7
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
|....++..++.+...++..|+.+ .+|...|....++-..+.|.|+
T Consensus 10 ~d~~~Ld~~~~~I~~~ak~~g~~~-~GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 10 TNVRSLEKVCAQIKRIAEKTGVRM-SGPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEE-ECCccCCcceEEEEeeeCCCCC
Confidence 334557888888877778899986 5666777755566778999974
No 205
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.16 E-value=48 Score=20.96 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=20.0
Q ss_pred ceeEEEEEec--chHHHHHHHHHHHHHhCCEeecC
Q 022840 222 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 254 (291)
Q Consensus 222 g~~hi~~~v~--d~~~~~~~l~~~~~~~G~~~~~~ 254 (291)
+...+.|.++ +.+.+.+.| +++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 4444555554 666777777 9999998764
No 206
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.30 E-value=1.4e+02 Score=22.58 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEc
Q 022840 103 VYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQR 147 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~ 147 (291)
+|.+..+|...|... ....+++|--|.-|.|+-+
T Consensus 91 ~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 91 IDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred HHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 777888888888621 1136899999999998744
No 207
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=42.56 E-value=34 Score=24.73 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=47.7
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeecC------CccCCCCceEEE-EEECCCCcE---EEEEEcCCCCCCceEEEeeeCCc
Q 022840 95 HLAIATEDVYKMVENIRAKGGNVTRE------PGPLKGMTTHFA-FVKDPDGYI---FELIQRGPTPEPLCQVMLRVGDL 164 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~------~~~~~~g~~~~~-~~~DP~G~~---iel~~~~~~~~~~~~v~l~v~D~ 164 (291)
-|.+.|++.+++++.|.++|+.+... -...|+|....+ .+.|-+=|+ +.|++.. .=.-+.++|.|.
T Consensus 44 IiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----~KAlli~r~ed~ 119 (142)
T COG4747 44 IIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----QKALLIVRVEDI 119 (142)
T ss_pred eEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----ceEEEEEEhhHH
Confidence 46788899999999999999975422 112233221101 123333222 2223222 224466889999
Q ss_pred cccHHHHHHhcCCeee
Q 022840 165 GRSIKFYEKALGMKLL 180 (291)
Q Consensus 165 ~~~~~Fy~~~lG~~~~ 180 (291)
+++..-+++ .|.++.
T Consensus 120 d~~~~aLed-~gi~~~ 134 (142)
T COG4747 120 DRAIKALED-AGIKLI 134 (142)
T ss_pred HHHHHHHHH-cCCeec
Confidence 999999977 676643
No 208
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.83 E-value=1e+02 Score=20.33 Aligned_cols=52 Identities=13% Similarity=-0.009 Sum_probs=32.4
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCC-ceEEEEECCCCceEE
Q 022840 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLN-TKITSFVDPDGWKTV 277 (291)
Q Consensus 226 i~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~-~~~~~~~DP~G~~ie 277 (291)
+.+.+.|=..++..+-..+.+.|+.+........+.. .-.+|++|.+|..+.
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 3444555444444444444999999987655433311 125999999999874
No 209
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=40.02 E-value=67 Score=22.64 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=32.9
Q ss_pred EecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
....++..++.+...++..|+.+ .+|-..|....++-..+.|.|+
T Consensus 12 d~~~Ld~~~~~I~~~~k~~g~~~-~GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 12 NPEDLDEVCDQIKEIAEKTGVDM-SGPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeE-ECCCcCCceeEEEEeeeCCCCC
Confidence 34457778888877778899986 4666777755566778999965
No 210
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=38.52 E-value=62 Score=22.76 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=33.9
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
+|....++...+.+-+.+...|+.+. +|...|....++-.++.|.++
T Consensus 15 S~d~~~L~~~~~~I~~~~k~~~~~~~-GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 15 SFNHELLNSSCKKIIDTASRTNATAV-GPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCeEe-CCcCCCcEEEEEEEecCCCCC
Confidence 44455678888888777788888864 566677755566778999874
No 211
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=37.14 E-value=18 Score=21.06 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=18.9
Q ss_pred CCceEEEeeeCCccccHHHHHHhcC
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALG 176 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG 176 (291)
++++..++.+++.++..+||...|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 3455566777888999999998663
No 212
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.11 E-value=84 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=21.5
Q ss_pred ceEEEEEECC----HHHHHHHHHHcCCeee
Q 022840 93 FGHLAIATED----VYKMVENIRAKGGNVT 118 (291)
Q Consensus 93 ~~~i~~~v~d----~~~~~~~l~~~G~~~~ 118 (291)
...+.++|++ ++++.+.|+++|+++.
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVV 70 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeE
Confidence 3457789888 8899999999999864
No 213
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=33.69 E-value=1.7e+02 Score=20.64 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=38.0
Q ss_pred ECCHHHHHHHHHHcCCeeecCCccCCCCceEEEE--EECCCCcEE--EEEEcCCCCCCceEEEeeeCCccccHHHHH
Q 022840 100 TEDVYKMVENIRAKGGNVTREPGPLKGMTTHFAF--VKDPDGYIF--ELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~--~~DP~G~~i--el~~~~~~~~~~~~v~l~v~D~~~~~~Fy~ 172 (291)
..+.+.+.++|+..++-..... ...++.. +.| ..+..|..+ |+.-... .+-..+.+.+.+.+-+..|+.
T Consensus 35 ~~~~~~i~~~L~~~nI~~iA~~-~~~~~~~-~~y~s~~~~~~~~fL~El~~~~~--~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 35 VPSPDAIEEKLQANNIFTIASG-KVDNGQK-FFYFSAKTTNGIWFLVELTIDPG--SPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp ---HHHHHHHHHCTT-EEEEEE-ECTT-EE-EEEEEEEBTTS-EEEEEEEE-TT---SSEEEEEEESSCCCHHHHHH
T ss_pred CCcHHHHHHHHHHCCEEEEecC-CCCcccc-EEEEEEEcCCCcEEEEEEEEcCC--CccEEEEEecCCHHHHHHHHH
Confidence 3578999999999999754322 2222233 233 466666543 4433332 335678899999876666664
No 214
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=33.64 E-value=1.1e+02 Score=20.53 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=16.9
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeE
Q 022840 28 VYRVGDLDRTIKYYTECFGMELLRK 52 (291)
Q Consensus 28 ~l~v~D~~~~~~FY~~~lG~~~~~~ 52 (291)
.+...+-..|.++|++ |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344677899999998 99998753
No 215
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.73 E-value=1.1e+02 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhcCCEEeeEeecCCCCeeEEEeccCCC
Q 022840 32 GDLDRTIKYYTECFGMELLRKRDVPEEKYSNAFLGFGPE 70 (291)
Q Consensus 32 ~D~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~ 70 (291)
.|..++..||.+.||+++.... +.-...+|-.+.+.
T Consensus 145 a~~~e~a~wy~dyLGleie~~h---gevikfiFTnIdpk 180 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNIDPK 180 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc---CceEEEEEeccCCC
Confidence 4678889999999999986432 22234555555443
No 216
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=32.13 E-value=99 Score=24.04 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEEEcCC-----CCCCceEEEeeeCCccccHHHHHHhc
Q 022840 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELIQRGP-----TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~~~~~-----~~~~~~~v~l~v~D~~~~~~Fy~~~l 175 (291)
+..+++.++..+.-.--..+..-.-.|.+ ++.++++||..+.|.-... +|+.-++..+..++-=++.+++++-=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~G-iF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEG-IFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecce-EEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 45777777666543321112122223445 3668999999998876653 35556677777777777777777777
Q ss_pred CCeeeee
Q 022840 176 GMKLLRT 182 (291)
Q Consensus 176 G~~~~~~ 182 (291)
||....+
T Consensus 157 gWVa~yt 163 (181)
T COG1791 157 GWVAIYT 163 (181)
T ss_pred Cceeeec
Confidence 7765443
No 217
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=31.55 E-value=93 Score=21.86 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=32.2
Q ss_pred EecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 229 STDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 229 ~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
....++.....+-..+...|+.+ .+|...|....++..++.|.++
T Consensus 14 d~~~L~~~~~~i~~~a~~~~i~v-~GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 14 DHRLLDQSAKKIVETAKRTGAQV-RGPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeE-ECCcCCCcEEEEEEEeeCCCCC
Confidence 34457777777766667889887 4566677755566778999986
No 218
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.24 E-value=1.5e+02 Score=18.91 Aligned_cols=51 Identities=22% Similarity=0.067 Sum_probs=33.1
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCc---eEEEEECCCCceEE
Q 022840 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNT---KITSFVDPDGWKTV 277 (291)
Q Consensus 226 i~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~---~~~~~~DP~G~~ie 277 (291)
+.+...|-...+.++-..+..+|+.+......... ++ -.+++.|++|..+.
T Consensus 4 i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~-~~~v~D~F~v~~~~~~~~~ 57 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTTR-DGYALDTFVVLDPDGEPIG 57 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeC-CCeEEEEEEEECCCCCCCC
Confidence 45556666666666666668999998875432221 13 24778999988643
No 219
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=29.46 E-value=2.9e+02 Score=21.90 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=36.6
Q ss_pred CceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccc-eeeeeeccccCCceeE---EEEeeecCceeeccCcceeEEEE
Q 022840 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEEDQTTV---LELAYSYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---l~l~~~~~~~~~~~~~g~~hi~~ 228 (291)
.++|+.++|.+.+.+.++-...+-.-..-....-+|+ +.++-+.-+-.-.+-. +||..+.+ ..| .-.|.-||-|
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Y-p~eGWEHIE~ 111 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD-KRY-PQEGWEHIEF 111 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S-S---SS-EEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 4799999999999999999887755432221111222 1222222111111233 34433222 111 2358899999
Q ss_pred Eecc
Q 022840 229 STDD 232 (291)
Q Consensus 229 ~v~d 232 (291)
.++.
T Consensus 112 Vip~ 115 (185)
T PF06185_consen 112 VIPS 115 (185)
T ss_dssp E--S
T ss_pred EecC
Confidence 8873
No 220
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=29.01 E-value=94 Score=21.67 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=32.9
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCceEEEEECCCCc
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~DP~G~ 274 (291)
+....++...+.+-..+...|+.+. +|...|....++..++.|.++
T Consensus 10 ~d~~~L~~~~~~i~~~a~~~gi~~~-gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 10 YDHRLLDQSTKKIVETAKRTGAQVK-GPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcee-cccCCCCEEEEEEEeeCCCCC
Confidence 3445677777777777778898874 666677744556778999986
No 221
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.19 E-value=1.2e+02 Score=18.82 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.8
Q ss_pred EEEEEECCHHHHHHHHHHcCCee
Q 022840 95 HLAIATEDVYKMVENIRAKGGNV 117 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
.+.+.++|.+.+.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 35566788889999999999875
No 222
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.26 E-value=2.8e+02 Score=21.06 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=40.3
Q ss_pred ceEEEeeeCCccccHHHHHHhcCCeeeeeccCcccc-eeeeeeccccCCceeEEEEeeecCc--eeeccCcceeEEEEEe
Q 022840 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTIDSPELK-CALAMLGYAEEDQTTVLELAYSYGV--TEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~~v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~~~g~~hi~~~v 230 (291)
++|+.++|.+.+.+.+|-...+-.-..-....-+|+ +.++-+.-+-.-.+-.++..+-+-+ ..| .-.|.-||-+.+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k~Y-p~eGWEHIE~Vl 80 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDKKY-PQEGWEHIEIVI 80 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCCCC-CCCCceEEEEEe
Confidence 689999999999999988765543211111111222 2222222222222333333332111 112 235889999988
Q ss_pred cc
Q 022840 231 DD 232 (291)
Q Consensus 231 ~d 232 (291)
+.
T Consensus 81 p~ 82 (149)
T cd07268 81 PS 82 (149)
T ss_pred cC
Confidence 74
No 223
>PRK11700 hypothetical protein; Provisional
Probab=26.92 E-value=3.2e+02 Score=21.64 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=40.9
Q ss_pred CCceEEEeeeCCccccHHHHHHhcCC--eeeeeccCcccc-eeeeeeccccCCceeEE---EEeeecCceeeccCcceeE
Q 022840 152 EPLCQVMLRVGDLGRSIKFYEKALGM--KLLRTIDSPELK-CALAMLGYAEEDQTTVL---ELAYSYGVTEYTKGNAYAQ 225 (291)
Q Consensus 152 ~~~~~v~l~v~D~~~~~~Fy~~~lG~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l---~l~~~~~~~~~~~~~g~~h 225 (291)
-.++|+.++|.+.+.+.+|-...+-. -.++. .-+|+ +.++-+.-+-.-.+-.+ ||..+.+ ..| .-.|.-|
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen--~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Y-p~eGWEH 113 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSEN--IINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRY-PHEGWEH 113 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhcc--ccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceE
Confidence 45799999999999999988765533 22221 11222 22222222222223333 4433211 112 2358899
Q ss_pred EEEEecc
Q 022840 226 VAISTDD 232 (291)
Q Consensus 226 i~~~v~d 232 (291)
|-+.++.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9998874
No 224
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.04 E-value=1.9e+02 Score=18.76 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=30.9
Q ss_pred EEEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCce---EEEEECCCCc
Q 022840 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTK---ITSFVDPDGW 274 (291)
Q Consensus 226 i~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~---~~~~~DP~G~ 274 (291)
+.+.+.|-..++.++-..+...|+.+......... +++ .+|+.|++|.
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~-~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTP-DGRVLDLFFITDAREL 53 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECC-CCEEEEEEEEeCCCCC
Confidence 34455665666666666669999998875443211 232 4888999887
No 225
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=24.70 E-value=1.2e+02 Score=21.10 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCcEEEEE
Q 022840 101 EDVYKMVENIRAKGGNVTREPGPLKGMTTHFAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DP~G~~iel~ 145 (291)
.|+.++..+|..+|+. .-+.|++|+..||-
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLg 50 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELG 50 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecC
Confidence 3688888999988864 34889999998874
No 226
>PRK14707 hypothetical protein; Provisional
Probab=23.71 E-value=2.4e+02 Score=31.38 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=33.5
Q ss_pred EEecchHHHHHHHHHHHHHhCCEeecCCc----ccCCCCceEEEEECCCCceEEE
Q 022840 228 ISTDDVYKSAEVVNLVTQELGGKITRQPG----PIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 ~~v~d~~~~~~~l~~~~~~~G~~~~~~p~----~~~~~~~~~~~~~DP~G~~iel 278 (291)
+.-++.-+.+..+...|.+.|+....-.- ..+.+.+..++++||+|..|||
T Consensus 2349 Lpp~~Fva~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEI 2403 (2710)
T PRK14707 2349 LEPQGFTAGLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEI 2403 (2710)
T ss_pred cCchhHHHHHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEE
Confidence 33345555566665666999988665331 1233456677889999999887
No 227
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.30 E-value=1.1e+02 Score=14.80 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=9.6
Q ss_pred EEEEEECCCCcEEE
Q 022840 130 HFAFVKDPDGYIFE 143 (291)
Q Consensus 130 ~~~~~~DP~G~~ie 143 (291)
.+..+.|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34668999998873
No 228
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.87 E-value=2.1e+02 Score=17.88 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=18.8
Q ss_pred ceeEEEEEecchHHHHHHHHHHHHHhCCEee
Q 022840 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 222 g~~hi~~~v~d~~~~~~~l~~~~~~~G~~~~ 252 (291)
+..++.+++.+ .+..+.+...|+++|+++.
T Consensus 38 ~~v~v~ie~~~-~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPD-REDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHHHHcCCCcc
Confidence 44667788876 3444444455599998753
No 229
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=21.05 E-value=2.1e+02 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=22.3
Q ss_pred cCcceeEEEEEe------cchHHHHHHHHHHHHHhCCEee
Q 022840 219 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 219 ~~~g~~hi~~~v------~d~~~~~~~l~~~~~~~G~~~~ 252 (291)
.|..+.|+++.| .||+++.+.+ +++|+...
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 466789999999 9999999999 99999877
No 230
>PTZ00330 acetyltransferase; Provisional
Probab=21.05 E-value=1.4e+02 Score=21.78 Aligned_cols=26 Identities=8% Similarity=0.355 Sum_probs=18.5
Q ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEee
Q 022840 23 RFLHAVYRVGDLDRTIKYYTECFGMELLR 51 (291)
Q Consensus 23 ~i~hv~l~v~D~~~~~~FY~~~lG~~~~~ 51 (291)
++..+.+.++ +.+.+||+. +||+...
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 3445555553 579999987 9998764
No 231
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.37 E-value=2.5e+02 Score=18.01 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=29.6
Q ss_pred EEEecchHHHHHHHHHHHHHhCCEeecCCcccCCCCce---EEEEECCC-Cce
Q 022840 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGPIPGLNTK---ITSFVDPD-GWK 275 (291)
Q Consensus 227 ~~~v~d~~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~---~~~~~DP~-G~~ 275 (291)
.+...|-...+.++-..+...|+.+...-.... +++ .+++.|++ |..
T Consensus 4 ~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~ 54 (74)
T cd04925 4 ELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAP 54 (74)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCC
Confidence 344455566666666666899999887543322 233 37789988 765
Done!