Query 022844
Match_columns 291
No_of_seqs 226 out of 1629
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.1E-53 2.3E-58 369.3 15.1 236 54-290 36-276 (398)
2 KOG0141 Isovaleryl-CoA dehydro 100.0 2.6E-53 5.7E-58 361.8 13.5 239 53-291 39-286 (421)
3 KOG0138 Glutaryl-CoA dehydroge 100.0 2.8E-50 6E-55 342.4 19.9 274 16-289 16-291 (432)
4 KOG0140 Medium-chain acyl-CoA 100.0 3.5E-50 7.6E-55 342.4 16.0 237 52-289 25-269 (408)
5 PLN02526 acyl-coenzyme A oxida 100.0 7.1E-47 1.5E-51 352.7 28.2 261 28-289 2-263 (412)
6 PRK09463 fadE acyl-CoA dehydro 100.0 6.5E-46 1.4E-50 363.0 26.5 257 11-288 53-333 (777)
7 cd01151 GCD Glutaryl-CoA dehyd 100.0 2.2E-45 4.8E-50 340.1 28.2 239 51-289 9-247 (386)
8 PRK13026 acyl-CoA dehydrogenas 100.0 3.3E-45 7E-50 357.0 26.5 256 12-288 53-332 (774)
9 PLN02519 isovaleryl-CoA dehydr 100.0 3E-43 6.4E-48 327.7 26.2 239 51-289 22-267 (404)
10 PRK03354 crotonobetainyl-CoA d 100.0 5.9E-43 1.3E-47 323.3 25.8 236 51-289 1-242 (380)
11 PRK12341 putative acyl-CoA deh 100.0 8.2E-43 1.8E-47 322.5 26.5 235 51-289 1-243 (381)
12 cd01161 VLCAD Very long chain 100.0 5.4E-43 1.2E-47 326.5 24.8 256 16-289 3-269 (409)
13 cd01156 IVD Isovaleryl-CoA deh 100.0 1E-42 2.2E-47 321.2 26.3 235 55-289 2-241 (376)
14 cd01157 MCAD Medium chain acyl 100.0 1.4E-42 2.9E-47 320.6 25.5 234 55-289 1-242 (378)
15 TIGR03203 pimD_small pimeloyl- 100.0 1.1E-42 2.4E-47 321.0 24.4 233 53-290 2-242 (378)
16 PTZ00461 isovaleryl-CoA dehydr 100.0 2.5E-42 5.4E-47 322.1 25.9 235 53-289 35-272 (410)
17 cd01162 IBD Isobutyryl-CoA deh 100.0 3.7E-42 7.9E-47 317.5 25.9 234 55-289 1-238 (375)
18 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.8E-42 6E-47 318.0 24.5 234 55-290 1-240 (372)
19 cd01160 LCAD Long chain acyl-C 100.0 7E-42 1.5E-46 315.2 25.5 231 58-289 2-238 (372)
20 TIGR03204 pimC_large pimeloyl- 100.0 4.9E-41 1.1E-45 311.8 26.1 234 52-289 1-245 (395)
21 cd01158 SCAD_SBCAD Short chain 100.0 3.3E-40 7.1E-45 304.1 24.5 232 58-289 2-238 (373)
22 KOG0137 Very-long-chain acyl-C 100.0 4.9E-41 1.1E-45 307.9 16.1 262 8-290 48-324 (634)
23 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.4E-39 3E-44 302.2 22.8 231 59-289 3-257 (394)
24 COG1960 CaiA Acyl-CoA dehydrog 100.0 3.1E-39 6.6E-44 299.7 22.2 236 54-289 4-253 (393)
25 PTZ00456 acyl-CoA dehydrogenas 100.0 1.9E-39 4.1E-44 313.8 21.4 230 57-290 58-320 (622)
26 cd01152 ACAD_fadE6_17_26 Putat 100.0 4.1E-39 8.9E-44 297.7 21.1 229 58-289 2-241 (380)
27 cd01153 ACAD_fadE5 Putative ac 100.0 1.4E-37 3.1E-42 289.8 23.9 222 63-289 2-250 (407)
28 PLN02876 acyl-CoA dehydrogenas 100.0 2.4E-37 5.2E-42 310.1 24.7 238 53-290 400-682 (822)
29 PLN02636 acyl-coenzyme A oxida 100.0 2E-37 4.4E-42 302.3 22.2 236 49-290 55-336 (686)
30 cd01163 DszC Dibenzothiophene 100.0 1.4E-36 3.1E-41 280.5 22.8 204 66-274 3-207 (377)
31 PTZ00457 acyl-CoA dehydrogenas 100.0 7.1E-36 1.5E-40 281.8 23.2 233 3-290 5-252 (520)
32 PLN02312 acyl-CoA oxidase 100.0 3.8E-34 8.2E-39 278.9 19.9 207 81-290 100-341 (680)
33 cd01154 AidB Proteins involved 100.0 2.5E-33 5.4E-38 261.9 21.5 215 67-290 38-276 (418)
34 KOG1469 Predicted acyl-CoA deh 100.0 7E-32 1.5E-36 227.0 10.1 193 95-288 36-244 (392)
35 cd01159 NcnH Naphthocyclinone 100.0 1.3E-30 2.9E-35 240.1 16.3 185 73-273 9-197 (370)
36 cd00567 ACAD Acyl-CoA dehydrog 100.0 7.5E-29 1.6E-33 224.4 21.5 189 58-289 2-195 (327)
37 PRK11561 isovaleryl CoA dehydr 100.0 1.5E-28 3.3E-33 233.5 19.9 192 89-290 89-301 (538)
38 cd01150 AXO Peroxisomal acyl-C 100.0 7.7E-29 1.7E-33 240.6 16.5 177 114-290 80-291 (610)
39 PTZ00460 acyl-CoA dehydrogenas 99.9 2.2E-27 4.8E-32 230.6 15.4 154 136-289 95-278 (646)
40 PLN02443 acyl-coenzyme A oxida 99.9 3.1E-25 6.7E-30 216.0 15.5 136 138-273 101-257 (664)
41 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 8.1E-21 1.8E-25 145.5 9.7 112 56-167 1-113 (113)
42 KOG0135 Pristanoyl-CoA/acyl-Co 99.8 4.8E-19 1.1E-23 162.3 11.3 187 83-273 74-279 (661)
43 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 2.2E-16 4.9E-21 103.6 6.5 52 171-222 1-52 (52)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.6 3.2E-14 6.8E-19 134.4 13.3 135 146-281 117-284 (477)
45 KOG0136 Acyl-CoA oxidase [Lipi 99.5 6E-14 1.3E-18 131.7 13.3 137 136-272 111-265 (670)
46 PF11794 HpaB_N: 4-hydroxyphen 98.7 2.1E-07 4.5E-12 81.1 10.8 118 154-271 123-263 (264)
47 COG2368 Aromatic ring hydroxyl 98.3 3.3E-06 7.2E-11 78.1 9.4 117 155-271 132-275 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 98.3 3.3E-06 7.1E-11 80.3 9.6 118 154-271 136-279 (519)
49 PF14749 Acyl-CoA_ox_N: Acyl-c 91.4 0.2 4.4E-06 38.6 3.1 32 137-168 93-124 (125)
50 PF02084 Bindin: Bindin; Inte 59.7 34 0.00073 29.1 6.1 64 84-166 98-163 (238)
51 PF01726 LexA_DNA_bind: LexA D 49.7 59 0.0013 21.9 5.1 49 54-102 3-57 (65)
52 PF13051 DUF3912: Protein of u 34.6 59 0.0013 21.3 3.0 36 197-232 2-37 (68)
53 cd08816 CARD_RIG-I_1 Caspase a 28.2 1.9E+02 0.0041 20.8 4.9 40 57-96 2-41 (89)
54 PF12584 TRAPPC10: Trafficking 24.8 1.8E+02 0.004 22.8 5.1 60 193-262 67-139 (147)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-53 Score=369.34 Aligned_cols=236 Identities=34% Similarity=0.501 Sum_probs=226.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 022844 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (291)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~ 132 (291)
.|+|.+.++.+.+++|+++.+.|.+++.|++..+|+.+++.+.++|++|+ +|++|||.|.++..++.++||+++.|+++
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 38899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCC
Q 022844 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212 (291)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a 212 (291)
++++.+|+.+...+|..|||++||++|+|.+ .|+.+++||++||++|||+..+.|+|++++|.|+|||+|+||||+..|
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A 194 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEA 194 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCccc
Confidence 9999999999999999999999999888876 577899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhc
Q 022844 213 DVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCS 288 (291)
Q Consensus 213 ~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r 288 (291)
++++|+|.++. .+|+++|+||+++||+++...++++|+|++.+|.|.|+||+||.+++||+ +.||++.+..||.+|
T Consensus 195 ~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR 274 (398)
T KOG0139|consen 195 DWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR 274 (398)
T ss_pred ceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccc
Confidence 99999999863 47899999999999999999999999999999999999999999999999 569999999999999
Q ss_pred cC
Q 022844 289 KF 290 (291)
Q Consensus 289 ~~ 290 (291)
.-
T Consensus 275 Ig 276 (398)
T KOG0139|consen 275 IG 276 (398)
T ss_pred ee
Confidence 63
No 2
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-53 Score=361.80 Aligned_cols=239 Identities=29% Similarity=0.423 Sum_probs=228.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCC--ChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEF--PFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~--p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
+-+++|++.+++.+++|+++++.|.+.++|+.+.+ ..++|+++.+.|++|+ .|++|||.|.++...++++||+++++
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~ 118 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRAS 118 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhc
Confidence 34899999999999999999999999999999999 4789999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
..+++.++.|+.+++..|.+.|+++||++|||++.+|+-++++|+|||++|||+..+.++|++.+++|+|||.|.|||||
T Consensus 119 g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG 198 (421)
T KOG0141|consen 119 GGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNG 198 (421)
T ss_pred CCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeC-----CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHH
Q 022844 210 TFADVLVIFARNT-----TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (291)
Q Consensus 210 ~~a~~~lv~a~~~-----~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~ 283 (291)
+.||.++|.|+++ +..|+++|+|+++.||++..+..+|+|||++.||++.|+||+||++++||+. .|+-.+|.-
T Consensus 199 ~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsg 278 (421)
T KOG0141|consen 199 PDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSG 278 (421)
T ss_pred CCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecC
Confidence 9999999999985 2468999999999999999999999999999999999999999999999985 599999999
Q ss_pred HHhhccCC
Q 022844 284 RLLCSKFL 291 (291)
Q Consensus 284 ~~~~r~~~ 291 (291)
+..+||.|
T Consensus 279 Ld~ERLvl 286 (421)
T KOG0141|consen 279 LDLERLVL 286 (421)
T ss_pred CChhHhhh
Confidence 99999875
No 3
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-50 Score=342.37 Aligned_cols=274 Identities=39% Similarity=0.551 Sum_probs=262.2
Q ss_pred cccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHH
Q 022844 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (291)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l 95 (291)
.++.++..+++...-.++...+.+.+|++..|++++++.|++|++.+++.+|++|++++.|...++.+...||.++..+|
T Consensus 16 ~rs~~s~l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pem 95 (432)
T KOG0138|consen 16 LRSWVSSLAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEM 95 (432)
T ss_pred eeehhhcCchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhh
Confidence 45677888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEec
Q 022844 96 GALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175 (291)
Q Consensus 96 ~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~t 175 (291)
..+|++|...+.||..|.|.+.+..+..|+.|.+.+....+.+|+++++..|..+|+++||++|||.+++|+.++||++|
T Consensus 96 GsmGvlG~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT 175 (432)
T KOG0138|consen 96 GSMGVLGPTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT 175 (432)
T ss_pred hccccccCcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence 99999998779999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEeCCE--EEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCcccc
Q 022844 176 EPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIV 253 (291)
Q Consensus 176 Ep~~Gsd~~~~~t~a~~~~~g--~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~ 253 (291)
||++|||+..+.|+|++++.+ |.|||+|+||+|++.||+++|+||...++.+.-|+|+++.+|++..+++.|.++|++
T Consensus 176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas 255 (432)
T KOG0138|consen 176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRAS 255 (432)
T ss_pred CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeec
Confidence 999999999999999999888 999999999999999999999999875677999999999999999999999999999
Q ss_pred ceeeEEEeeeEeCCCCCcCCCCcHHHHHHHHHhhcc
Q 022844 254 QNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSK 289 (291)
Q Consensus 254 ~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~~~~r~ 289 (291)
.++.|-+|||+||+|++|.+.++|+..+.++|.+|.
T Consensus 256 ~tG~Ilmd~V~VPeE~~LPg~~s~qgpf~cLnnaR~ 291 (432)
T KOG0138|consen 256 ATGMILMDGVEVPEENLLPGASSLQGPFGCLNNARY 291 (432)
T ss_pred ccCceeecCCcCChhhcCCCccccCCchhhhhhhhh
Confidence 999999999999999999999999999999999985
No 4
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-50 Score=342.42 Aligned_cols=237 Identities=30% Similarity=0.427 Sum_probs=226.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (291)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~ 130 (291)
++.|+++|.++++.+++|..+++.|.+.++|+.+++|.+++++..++|+.+. +|+++||+|++.++.+.+.|+|+..|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 4779999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~ 210 (291)
++...+..|+ +++++|-.+|+++||++||++++...++++.|+|||++|||+..+.|+|++.+|.|+|||.|.||||+.
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9998888775 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCC------CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHH
Q 022844 211 FADVLVIFARNTT------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKV 283 (291)
Q Consensus 211 ~a~~~lv~a~~~~------~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~ 283 (291)
.|+|++|+||+++ .+++++|+|+.++||++.++.+.+||.|.+++..|.|+||+||.+|+||. +.||+..|..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 9999999999864 25699999999999999999999999999999999999999999999987 4699999999
Q ss_pred HHhhcc
Q 022844 284 RLLCSK 289 (291)
Q Consensus 284 ~~~~r~ 289 (291)
|+..|-
T Consensus 264 fd~tRp 269 (408)
T KOG0140|consen 264 FDKTRP 269 (408)
T ss_pred ccCCCC
Confidence 998873
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=7.1e-47 Score=352.70 Aligned_cols=261 Identities=84% Similarity=1.311 Sum_probs=239.8
Q ss_pred ccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-ccc
Q 022844 28 ISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIK 106 (291)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~ 106 (291)
.+..+|+.+|.++|||.-.+|+.||..++++++++++.+++|+.+++.|...+.++...+|.++|++|.+.||+++ + +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~ 80 (412)
T PLN02526 2 VSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-K 80 (412)
T ss_pred cccccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-c
Confidence 3567899999999999999999999999999999999999999999998877777778899999999999999999 7 9
Q ss_pred CCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCC
Q 022844 107 GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASAL 186 (291)
Q Consensus 107 ~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~ 186 (291)
+|||.|+++.+++.++|++++.|++.+.++..|+.++...|..+|+++||++||+++++|+.++++++|||+.|||+..+
T Consensus 81 ~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~ 160 (412)
T PLN02526 81 GYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSL 160 (412)
T ss_pred ccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhC
Confidence 99999999999999999999999887766666665666689999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeC
Q 022844 187 NTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266 (291)
Q Consensus 187 ~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp 266 (291)
.|+|++++|||+|||+|.||+++..||+++|.+++++++++++|+||++.|||++.+.|+++|+|++++++|.|+||+||
T Consensus 161 ~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp 240 (412)
T PLN02526 161 NTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP 240 (412)
T ss_pred eeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEEC
Confidence 99999999999999999999999999999999998655678999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCcHHHHHHHHHhhcc
Q 022844 267 DEDRLPGVNSFQDTSKVRLLCSK 289 (291)
Q Consensus 267 ~~~vlg~~~g~~~~~~~~~~~r~ 289 (291)
++++|++.+++......++..|+
T Consensus 241 ~~~~l~~~~~~~~~~~~~~~~r~ 263 (412)
T PLN02526 241 DEDRLPGVNSFQDTNKVLAVSRV 263 (412)
T ss_pred HHHhCCCcccHHHHHHHHHHHHH
Confidence 99999876678777777777665
No 6
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=6.5e-46 Score=363.02 Aligned_cols=257 Identities=25% Similarity=0.280 Sum_probs=221.7
Q ss_pred cchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-HHHHHHhhccchHHHHHHhCCCCh
Q 022844 11 DVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMK-VRECMEKEIAPIMAEYWEKAEFPF 89 (291)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~-~~~~~~~~~~p~~~~~d~~~~~p~ 89 (291)
++--.++++|+|+|+|++++++|+++ |++|++++++. +++|+... ....+.++.+.+|+
T Consensus 53 g~~~~~~~lF~G~~~~~~l~~~p~~~------------------Ls~ee~~~~d~~v~~l~~~~--~~~~~~~~~~~~P~ 112 (777)
T PRK09463 53 GTVWWEGELFSGKPDWKKLLNYPKPT------------------LTAEEQAFLDGPVEELCRMV--NDWQITHELADLPP 112 (777)
T ss_pred CCchhhhhhcCCCCChHHhcCCCCCC------------------CCHHHHHHHHHHHHHHHHHH--HHHHHhccccCCCH
Confidence 34456899999999999999888754 68899999996 77776532 11122223478999
Q ss_pred HHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHH-HHHHhcCCHHHHHHHHHHHhcCC
Q 022844 90 HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLN 167 (291)
Q Consensus 90 ~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~Gt~~qk~~~l~~l~~G~ 167 (291)
++|+++++.||+++ +|++|||.|++..+++.++|++++.+.+++..+.++++++. .+|..+||++||++|||++++|+
T Consensus 113 e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge 192 (777)
T PRK09463 113 EVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGE 192 (777)
T ss_pred HHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 99999999999999 99999999999999999999999988887776667776664 58899999999999999999999
Q ss_pred ceeEEEecCCCCCCCCCCCceEE-----EEeCC---EEEEEeeeecccCCCCCCEEEEEEEeCC---------CCCeEEE
Q 022844 168 TIACWALTEPAYGSDASALNTTA-----TKVEG---GWILEGQKRWIGNSTFADVLVIFARNTT---------TNQINGY 230 (291)
Q Consensus 168 ~~~~~a~tEp~~Gsd~~~~~t~a-----~~~~~---g~~LnG~K~~it~~~~a~~~lv~a~~~~---------~~~~~~f 230 (291)
.++|+++|||++|||+..+.|++ .++++ ||+|||+|+||||++.||+++|++++.+ +.++++|
T Consensus 193 ~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~f 272 (777)
T PRK09463 193 EIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCA 272 (777)
T ss_pred ceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEE
Confidence 99999999999999998887644 34555 6999999999999999999999998621 3579999
Q ss_pred EEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC----CCcHHHHHHHHHhhc
Q 022844 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVRLLCS 288 (291)
Q Consensus 231 lV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~----~~g~~~~~~~~~~~r 288 (291)
+||+++|||++.+.+.++|++ ..+++++|+||+||.+++||+ ++||++++.+++.+|
T Consensus 273 LVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR 333 (777)
T PRK09463 273 LIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGR 333 (777)
T ss_pred EEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHH
Confidence 999999999999999999998 679999999999999999986 579999999999988
No 7
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=2.2e-45 Score=340.15 Aligned_cols=239 Identities=43% Similarity=0.714 Sum_probs=222.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCC
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDA 130 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~ 130 (291)
|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|.+.||++++|++|||.|+++.+...++|++++.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 88 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREVERVDS 88 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHHHhhCh
Confidence 67779999999999999999999999888888888899999999999999999889999999999999999999999999
Q ss_pred cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~ 210 (291)
+++..+.+|..++...|..+|+++||++|++++++|++++|+++|||++|||+..+.|+|+++++||+|||+|.|||++.
T Consensus 89 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~ 168 (386)
T cd01151 89 GYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSP 168 (386)
T ss_pred hHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCC
Confidence 88776666665666678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHHHHhhcc
Q 022844 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSK 289 (291)
Q Consensus 211 ~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~~~~r~ 289 (291)
.||+++|.|++++++++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+++.|+..++..++..|+
T Consensus 169 ~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~ 247 (386)
T cd01151 169 IADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARY 247 (386)
T ss_pred cCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHH
Confidence 9999999999875567899999999999999999999999999999999999999999999887888888888887764
No 8
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-45 Score=356.98 Aligned_cols=256 Identities=26% Similarity=0.294 Sum_probs=218.6
Q ss_pred chhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHH-HHHHHHHhhccchHHHHHHhCCCChH
Q 022844 12 VDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFH 90 (291)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~-~~~~~~~~~~~p~~~~~d~~~~~p~~ 90 (291)
+--.++++|+|+|+|++++++|+++ |++|++++.+ .++++++. + ......++.+.+|++
T Consensus 53 ~~~~~~~lf~G~~~~~~l~~~p~~~------------------l~~eeq~fl~~~v~~l~~~-~-~e~~~~~~~~~~P~e 112 (774)
T PRK13026 53 DVWWEGELFSGKPDWQKLHSYPKPT------------------LTAEEQAFIDNEVETLLTM-L-DDWDIVQNRKDLPPE 112 (774)
T ss_pred CcchhhhhcCCCCChhhcCCCCccc------------------cCHHHHHHHHHHHHHHHhh-h-hhhhhhhhhcCCCHH
Confidence 4456889999999999999877754 5677777766 56776652 2 223334567899999
Q ss_pred HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHH-HHHHHhcCCHHHHHHHHHHHhcCCc
Q 022844 91 VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNT 168 (291)
Q Consensus 91 ~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~Gt~~qk~~~l~~l~~G~~ 168 (291)
+|++|++.||+++ +|++|||.|++..+.+.++|++++.+.+.+..+.++++++ ..+|..+||++||++|||++++|+.
T Consensus 113 vw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~ 192 (774)
T PRK13026 113 VWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTE 192 (774)
T ss_pred HHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCe
Confidence 9999999999999 9999999999999999999999998887776666776665 4589999999999999999999999
Q ss_pred eeEEEecCCCCCCCCCCCceEEE-----EeCC---EEEEEeeeecccCCCCCCEEEEEEEe-CC--------CCCeEEEE
Q 022844 169 IACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQKRWIGNSTFADVLVIFARN-TT--------TNQINGYL 231 (291)
Q Consensus 169 ~~~~a~tEp~~Gsd~~~~~t~a~-----~~~~---g~~LnG~K~~it~~~~a~~~lv~a~~-~~--------~~~~~~fl 231 (291)
++|+|+|||++|||+..++|+++ ++++ ||+|||+|+|||+++.||+++|.+++ ++ ..|+++|+
T Consensus 193 i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fL 272 (774)
T PRK13026 193 IPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCAL 272 (774)
T ss_pred EEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEE
Confidence 99999999999999999886654 4565 69999999999999999999888764 21 24799999
Q ss_pred EeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC----CCcHHHHHHHHHhhc
Q 022844 232 VKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG----VNSFQDTSKVRLLCS 288 (291)
Q Consensus 232 V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~----~~g~~~~~~~~~~~r 288 (291)
||+++|||++.+.++++|++.. +++++|+||+||.+++||+ ++||++++.+++.+|
T Consensus 273 Vp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR 332 (774)
T PRK13026 273 IPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGR 332 (774)
T ss_pred EECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHH
Confidence 9999999999999999999864 6899999999999999986 469999999999988
No 9
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=3e-43 Score=327.69 Aligned_cols=239 Identities=26% Similarity=0.428 Sum_probs=217.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChH--HHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHc
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIAR 127 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~--~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~ 127 (291)
-|+.+++++.++++.+++|+++++.|...+.|+.+.+|.+ +|++|++.||+++ +|+++||.|+++.+.+.++|++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~ 101 (404)
T PLN02519 22 SSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISR 101 (404)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhh
Confidence 3556899999999999999999999998888888888876 7999999999999 999999999999999999999999
Q ss_pred cCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (291)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it 207 (291)
.|+++++.+.+|...+...|..+|+++||++|||++.+|+.++|+++|||+.|||...+.|+|++++|||+|||+|+|||
T Consensus 102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs 181 (404)
T PLN02519 102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCT 181 (404)
T ss_pred hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeec
Confidence 99999887766765556678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHH
Q 022844 208 NSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKV 283 (291)
Q Consensus 208 ~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~ 283 (291)
++..||+++|.|++++ ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. +.|+..++..
T Consensus 182 ~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~ 261 (404)
T PLN02519 182 NGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSG 261 (404)
T ss_pred CCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHH
Confidence 9999999999999753 24689999999999999999999999999999999999999999999987 4688777777
Q ss_pred HHhhcc
Q 022844 284 RLLCSK 289 (291)
Q Consensus 284 ~~~~r~ 289 (291)
++..|+
T Consensus 262 ~~~~r~ 267 (404)
T PLN02519 262 LDLERL 267 (404)
T ss_pred HHHHHH
Confidence 776664
No 10
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.9e-43 Score=323.32 Aligned_cols=236 Identities=23% Similarity=0.277 Sum_probs=209.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhc-cchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~-~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~ 128 (291)
|++.+|++++++++.+++|+++++ .+...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 456799999999999999999886 46666778888999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccC
Q 022844 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~ 208 (291)
|+++++.+.++. ....+..+|+++||++||+++++|+.+.++++|||+.|||...+.|+|++++|||+|||+|+|||+
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 998775444332 245788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHH
Q 022844 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVR 284 (291)
Q Consensus 209 ~~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~ 284 (291)
+..||+++|.|++++. .++++|+||++.+||++. .|+++|+|++++++|.|+||+||+++++|++ +|+......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999997422 357889999999999986 5899999999999999999999999999874 5887766666
Q ss_pred Hhhcc
Q 022844 285 LLCSK 289 (291)
Q Consensus 285 ~~~r~ 289 (291)
+..|.
T Consensus 238 ~~~r~ 242 (380)
T PRK03354 238 DHERF 242 (380)
T ss_pred HHHHH
Confidence 66553
No 11
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.2e-43 Score=322.46 Aligned_cols=235 Identities=20% Similarity=0.278 Sum_probs=209.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcc-chHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~-p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~ 128 (291)
|++.++++++++++.+++|+.+.+. +...++|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 5677999999999999999999886 4667778888999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHH-hcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l-~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it 207 (291)
|.+. .. .++..+...|..+|+++||++||+++ .+|+.++++++|||+.|||...+.|+|++++|||+|||+|+|||
T Consensus 81 ~~~~-~~--~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAPA-FL--ITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred ChhH-HH--HhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 9873 22 23334555678899999999999998 59998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHH
Q 022844 208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSK 282 (291)
Q Consensus 208 ~~~~a~~~lv~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~ 282 (291)
|+..||+++|.|+++++ .++++|+||++.|||++. .|+++|++++++++|.|+||+||++++||. ++|+..++.
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999997532 358999999999999995 589999999999999999999999999987 458887777
Q ss_pred HHHhhcc
Q 022844 283 VRLLCSK 289 (291)
Q Consensus 283 ~~~~~r~ 289 (291)
.++..|.
T Consensus 237 ~~~~~r~ 243 (381)
T PRK12341 237 NFEMERL 243 (381)
T ss_pred HHHhHHH
Confidence 7776664
No 12
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=5.4e-43 Score=326.48 Aligned_cols=256 Identities=27% Similarity=0.378 Sum_probs=223.9
Q ss_pred cccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHH
Q 022844 16 ARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKL 95 (291)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l 95 (291)
.++.|+|..+...++.+|. | |++.++++++++++.+++|+++.+.|. .+++.+.+|.++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l 65 (409)
T cd01161 3 ALNMFLGDIVTKQVFPYPS-------------V--LTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQL 65 (409)
T ss_pred hhHhhcCCcchhhcCCCcc-------------c--cCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHH
Confidence 4566778777777775553 3 344589999999999999999999886 3466778999999999
Q ss_pred HhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEe
Q 022844 96 GALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174 (291)
Q Consensus 96 ~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~ 174 (291)
++.||+++ +|+++||.|+++.+++.++|++++ |++++..+..|..++...+..+|+++|+++|++++++|+.++++++
T Consensus 66 ~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~ 144 (409)
T cd01161 66 KELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFAL 144 (409)
T ss_pred HhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEe
Confidence 99999999 999999999999999999999999 8887776666655555567889999999999999999999999999
Q ss_pred cCCCCCCCCCCCceEEEEe--CCEEEEEeeeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEeCCCCCeEEeccC
Q 022844 175 TEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVKKDAPGLTVTKIE 245 (291)
Q Consensus 175 tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~it~~~~a~~~lv~a~~~~-------~~~~~~flV~~~~~Gv~~~~~~ 245 (291)
|||++|||...+.|+|+++ ++||+|||+|.||||+..||+++|.|++++ .+++++|+||++.|||++.+.|
T Consensus 145 tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~ 224 (409)
T cd01161 145 TEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPE 224 (409)
T ss_pred cCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcc
Confidence 9999999999999999984 457999999999999999999999999751 1468899999999999999999
Q ss_pred CccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844 246 NKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK 289 (291)
Q Consensus 246 ~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~ 289 (291)
+++|++++++++|.|+||+||++++||.. .|+..++..++..|.
T Consensus 225 ~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~ 269 (409)
T cd01161 225 KKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRF 269 (409)
T ss_pred cccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHH
Confidence 99999999999999999999999999874 588888888887764
No 13
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1e-42 Score=321.20 Aligned_cols=235 Identities=31% Similarity=0.455 Sum_probs=215.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (291)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 133 (291)
++++++++++.+++|+++.+.|.+.+.|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 5689999999999999999999888888888899999999999999999 999999999999999999999999999988
Q ss_pred hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~ 213 (291)
+.+..|..++...|..+|+++||++|++++++|++++++++|||..|||...++++|+++++||+|||+|.|||++..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 76666655556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 214 ~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
+++|.|+++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. +.|+..++..++..|.
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999997532 4689999999999999999999999999999999999999999999987 4688877777776654
No 14
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.4e-42 Score=320.64 Aligned_cols=234 Identities=27% Similarity=0.430 Sum_probs=211.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (291)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 133 (291)
++++++++++.+++|+++.+.|.+.++|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 4678999999999999999999888888888999999999999999999 999999999999999999999999998876
Q ss_pred hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~ 213 (291)
+.+..+ .++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|++++++|||+|||+|.|||++..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 554333 3444566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHh
Q 022844 214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLL 286 (291)
Q Consensus 214 ~~lv~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~ 286 (291)
+++|.++++++ +++++|+||++.|||++.+.|.++|+++++++++.|+||+||++++||.. .|+..+...++.
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999997532 35889999999999999999999999999999999999999999999874 588888877776
Q ss_pred hcc
Q 022844 287 CSK 289 (291)
Q Consensus 287 ~r~ 289 (291)
.|.
T Consensus 240 ~r~ 242 (378)
T cd01157 240 TRP 242 (378)
T ss_pred hHH
Confidence 654
No 15
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.1e-42 Score=320.99 Aligned_cols=233 Identities=21% Similarity=0.216 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccchHHH--HHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~--~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
+.++++++++++.+++|+++.+.+.... .++.+.+|.++|++|++.||+++ +|++|||.|++..+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 3478999999999999999998875442 45677899999999999999999 99999999999999999999999987
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
.+.+. + .+..++..++..+|+++||++|||++++|+.+.++++|||++|||...+.|+|++++|+|+|||+|.|||++
T Consensus 82 ~~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 65442 2 222244567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHH
Q 022844 210 TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVR 284 (291)
Q Consensus 210 ~~a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~ 284 (291)
..||+++|+|++++ .+++++|+||++.|||++.+.+.++|+ .+++|.|+||+||++++||+ ++|++.++..+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 99999999999742 357999999999999999877777776 56899999999999999987 46899999999
Q ss_pred HhhccC
Q 022844 285 LLCSKF 290 (291)
Q Consensus 285 ~~~r~~ 290 (291)
+..|..
T Consensus 237 ~~~r~~ 242 (378)
T TIGR03203 237 DDARAA 242 (378)
T ss_pred HHHHHH
Confidence 988764
No 16
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-42 Score=322.08 Aligned_cols=235 Identities=25% Similarity=0.353 Sum_probs=213.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 022844 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (291)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~ 131 (291)
+.++++++++++.+++|+.+++.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++.+++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 468999999999999999999999988888888999999999999999999 9999999999999999999999999988
Q ss_pred chhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCC-EEEEEeeeecccCCC
Q 022844 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST 210 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~-g~~LnG~K~~it~~~ 210 (291)
++..+..|..+....+..+|+++||++|||++++|++++++++|||+.|||...+.|+++++++ ||+|||+|.||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 7665555654455677889999999999999999999999999999999999999999999765 799999999999999
Q ss_pred CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK 289 (291)
Q Consensus 211 ~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~ 289 (291)
.||+++|.|+++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+ .|+..+...++..|+
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~ 272 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV 272 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence 999999999975 35899999999999999999999999999999999999999999999874 688877777776664
No 17
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=3.7e-42 Score=317.48 Aligned_cols=234 Identities=29% Similarity=0.455 Sum_probs=214.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (291)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 133 (291)
++++++++++.+++|+++++.|.+.++|..+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 4688999999999999999999888888889999999999999999999 999999999999999999999999999988
Q ss_pred hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~ 213 (291)
.++..|. .+..++..+|+++||++|++++.+|+.++++++|||+.|||...+.|+++++++||+|||+|+|||++..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7666664 455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844 214 VLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK 289 (291)
Q Consensus 214 ~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~ 289 (291)
+++|.+++++ ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.. .|++.....++..|+
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~ 238 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRL 238 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 9999999753 246889999999999999999999999999999999999999999999874 588877777766553
No 18
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.8e-42 Score=317.98 Aligned_cols=234 Identities=27% Similarity=0.327 Sum_probs=211.8
Q ss_pred CCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcch
Q 022844 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCS 133 (291)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 133 (291)
++++++++++.+++|+++.+.|...+.|+.+.+|.++|++|.+.||+++ +|++|||.|+++.+.+.++|++++.+++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 4678999999999999999999988888888999999999999999999 999999999999999999999999999987
Q ss_pred hHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~ 213 (291)
++...+ .++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.|||++..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654332 3555678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhc
Q 022844 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCS 288 (291)
Q Consensus 214 ~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r 288 (291)
+++|++++++ ..++++|+||++.|||++. .|+++|+|++++++|.|+||+||++++||. +.|+..++..++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 9999999742 2368899999999999975 688999999999999999999999999987 468888888888877
Q ss_pred cC
Q 022844 289 KF 290 (291)
Q Consensus 289 ~~ 290 (291)
+.
T Consensus 239 ~~ 240 (372)
T TIGR03207 239 AL 240 (372)
T ss_pred HH
Confidence 53
No 19
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=7e-42 Score=315.22 Aligned_cols=231 Identities=29% Similarity=0.412 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 022844 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (291)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~ 136 (291)
+++++++.+++|+.+.+.|.+.+.|+.+.+|+++|++|++.||+++ +|++|||.|+++.+.+.++|++++++.+ +..+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~ 80 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGL 80 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHH
Confidence 6789999999999999999888888888999999999999999999 9999999999999999999999996654 4445
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEE
Q 022844 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (291)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~l 216 (291)
.+|...+..++..+|+++||++||+++.+|+.++|+++|||++|||...+.|+++++++||+|||+|.||||+..||+++
T Consensus 81 ~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~ 160 (372)
T cd01160 81 SLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVI 160 (372)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEE
Confidence 55654556688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844 217 IFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK 289 (291)
Q Consensus 217 v~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~ 289 (291)
|.|+++++ +++++|+||++.||+++.+.|+++|++++++++|.|+||+||++++||.. .|+..+...++..|+
T Consensus 161 v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~ 238 (372)
T cd01160 161 VVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERL 238 (372)
T ss_pred EEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99997532 46899999999999999999999999999999999999999999999874 588877777776654
No 20
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.9e-41 Score=311.79 Aligned_cols=234 Identities=25% Similarity=0.300 Sum_probs=203.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchHHHHH-HhCCCCh----HHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (291)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d-~~~~~p~----~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l 125 (291)
|+.++++++++++.+++|+++++.|...+.+ +...+|. ++|+++.+.||+++ +|++|||.|+++.+++.++|++
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999988765432 3334553 89999999999999 9999999999999999999999
Q ss_pred HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeec
Q 022844 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (291)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~ 205 (291)
++++.+.++...++ ++...|..+|+++||++|||++++|+.+.++++|||++|||...+.|++++++++|+|||+|.|
T Consensus 81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~ 158 (395)
T TIGR03204 81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158 (395)
T ss_pred HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence 99998877543322 3344788899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHH
Q 022844 206 IGNSTFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDT 280 (291)
Q Consensus 206 it~~~~a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~ 280 (291)
|+|+..||+++|.|++++ ..++++|+||.+.|||++.+....+| +.++++|.|+||+||++++||. ++|+...
T Consensus 159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 236 (395)
T TIGR03204 159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA 236 (395)
T ss_pred ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence 999999999999999752 24689999999999999987766665 5689999999999999999987 4689988
Q ss_pred HHHHHhhcc
Q 022844 281 SKVRLLCSK 289 (291)
Q Consensus 281 ~~~~~~~r~ 289 (291)
+..++..|.
T Consensus 237 ~~~l~~~r~ 245 (395)
T TIGR03204 237 KFLLGNERT 245 (395)
T ss_pred HHHHHHHHH
Confidence 888888764
No 21
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=3.3e-40 Score=304.08 Aligned_cols=232 Identities=41% Similarity=0.586 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 022844 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (291)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~ 136 (291)
+++++++.+++|+.+++.+.+.+.|+.+.+|.+.|+.|++.||+++ +|+++||.|.++.+++.++|+++++|+++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 5789999999999999998888888888899999999999999999 999999999999999999999999999998877
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEE
Q 022844 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (291)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~l 216 (291)
..|...+..++..+|+++|+++|++++.+|+.++++++|||..|||...+.++++++++||+|||+|.|+|++..||+++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 77765566788899999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844 217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK 289 (291)
Q Consensus 217 v~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~ 289 (291)
|.++++++ .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.. .|+....+.++..|+
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 238 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRI 238 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99987532 45889999999999999999999999999999999999999999999874 588877777766654
No 22
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-41 Score=307.92 Aligned_cols=262 Identities=26% Similarity=0.346 Sum_probs=230.9
Q ss_pred CCccchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHH----HHHHHHHHhhccchHHHHHH
Q 022844 8 HQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVR----MKVRECMEKEIAPIMAEYWE 83 (291)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~----~~~~~~~~~~~~p~~~~~d~ 83 (291)
..+.+|...+.+|.+...-+.+++||... ++|+.++. +..++|+.+... .+..|+
T Consensus 48 ~~i~~rs~~~~lF~~~~v~k~v~~yPev~-------------------~~e~~~~~~~~~~pl~r~f~e~~d--~~k~d~ 106 (634)
T KOG0137|consen 48 ASIESRSFARGLFRGKLVTKDVFPYPEVI-------------------TSEQKELLEQFVLPLERFFEEVND--SKKNDK 106 (634)
T ss_pred CCccchhHHHHhhhhhhhhhhhcCCcccC-------------------cHHHHHHHHhhhhhHHHhhhccch--hhhhhh
Confidence 45677788888888888888888776553 44555554 445666655433 344567
Q ss_pred hCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHH
Q 022844 84 KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS 162 (291)
Q Consensus 84 ~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~ 162 (291)
....+++.++.|+++|++|+ +|++|+|.|+.+..++.+.|.++.++.++++.+..|.+++...|..+|+++||++|||+
T Consensus 107 ~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~ 186 (634)
T KOG0137|consen 107 LGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPK 186 (634)
T ss_pred hcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHh
Confidence 88999999999999999999 99999999999999999999999999999988888888888899999999999999999
Q ss_pred HhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE--EEEEeeeecccCCCCCCEEEEEEEeCC-------CCCeEEEEEe
Q 022844 163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTT-------TNQINGYLVK 233 (291)
Q Consensus 163 l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g--~~LnG~K~~it~~~~a~~~lv~a~~~~-------~~~~~~flV~ 233 (291)
+++|+.+++||+|||..|||+...+|+|+...|| |+|||.|.||+|+..||+++|+|+++- .+++++|||+
T Consensus 187 LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flve 266 (634)
T KOG0137|consen 187 LASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVE 266 (634)
T ss_pred hhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEe
Confidence 9999999999999999999999999999987755 999999999999999999999999851 2569999999
Q ss_pred CCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhccC
Q 022844 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSKF 290 (291)
Q Consensus 234 ~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~~ 290 (291)
++..||+-.+++.+||.|++.+++|.|++|.||.+++||.+ .|++..++++|.+|.-
T Consensus 267 r~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~ 324 (634)
T KOG0137|consen 267 RDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFG 324 (634)
T ss_pred ccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcc
Confidence 99999999999999999999999999999999999999985 6999999999999863
No 23
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.4e-39 Score=302.17 Aligned_cols=231 Identities=22% Similarity=0.244 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHhC-------CCC----hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHH
Q 022844 59 EQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP----FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIA 126 (291)
Q Consensus 59 ~~~l~~~~~~~~~~~~~p~~~~~d~~~-------~~p----~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~ 126 (291)
.+++++.+++|+++++.|...+.|+.+ .+| +++|+.++++||+++ +|++|||.|+++.+.+.++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 578999999999999999877776431 134 589999999999999 99999999999999999999999
Q ss_pred ccCC-cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCC-CCCCCCCCceEEEEeCCEEEEEeeee
Q 022844 127 RVDA-SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (291)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~ 204 (291)
+++. +.++....+...+..+|..+|+++||++|||++++|+.++++++|||+ .|||...+.|+++++++||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 9863 323212222222345789999999999999999999999999999997 68999999999999999999999999
Q ss_pred cccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccc--cceeeEEEeeeEeCCCCCcCCC-
Q 022844 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV- 274 (291)
Q Consensus 205 ~it~~~~--a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~--~~~~~v~f~~v~Vp~~~vlg~~- 274 (291)
||||+.+ +++++|.++++++ .++++|+||++.||+++.+.|+++|+|+ +++++|.|+||+||++++||..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999965 7899999987532 4689999999999999999999999997 5789999999999999999874
Q ss_pred CcHHHHHHHHHhhcc
Q 022844 275 NSFQDTSKVRLLCSK 289 (291)
Q Consensus 275 ~g~~~~~~~~~~~r~ 289 (291)
.|++.+...++..|+
T Consensus 243 ~g~~~~~~~~~~~r~ 257 (394)
T cd01155 243 RGFEIAQGRLGPGRI 257 (394)
T ss_pred hHHHHHHHHhhhhHH
Confidence 588888888777664
No 24
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=3.1e-39 Score=299.74 Aligned_cols=236 Identities=36% Similarity=0.504 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhccchHHHHHH---hCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~---~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
.+++++.++++.+++|+.+.+.|...+.+. ...+|.++++++++.|++++ +|++|||.|++......+.|++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~ 83 (393)
T COG1960 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARAD 83 (393)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhC
Confidence 356789999999999999999887777765 57889999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHH---HHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCc-eEEEEeCCEEEEEeeeec
Q 022844 130 ASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKRW 205 (291)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~-t~a~~~~~g~~LnG~K~~ 205 (291)
++.+..+..+... ....+..+|+++||++|||++++|++++|+++|||.+|||+..+. |++++.+++|+|||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~ 163 (393)
T COG1960 84 AGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIW 163 (393)
T ss_pred cchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEE
Confidence 8776644444321 223677899999999999999999999999999999999999887 777776666999999999
Q ss_pred ccCCCCCCEEEEEEEeCCC----CCeEEEEEeCC-CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHH
Q 022844 206 IGNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQD 279 (291)
Q Consensus 206 it~~~~a~~~lv~a~~~~~----~~~~~flV~~~-~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~ 279 (291)
|||+..||+++|+|++++. +++++|+||++ .|||++.+.+.+.|+|++++++|.|+||+||.+++||+ +.||..
T Consensus 164 is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~ 243 (393)
T COG1960 164 ISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKI 243 (393)
T ss_pred EcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHH
Confidence 9999999999999998643 57999999999 59999999885449999999999999999999999996 469999
Q ss_pred HHHHHHhhcc
Q 022844 280 TSKVRLLCSK 289 (291)
Q Consensus 280 ~~~~~~~~r~ 289 (291)
++..++.+|+
T Consensus 244 ~~~~l~~~r~ 253 (393)
T COG1960 244 AMETLNVERL 253 (393)
T ss_pred HHHhhchHHH
Confidence 9999999886
No 25
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-39 Score=313.80 Aligned_cols=230 Identities=18% Similarity=0.194 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHhCCC---------C---hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (291)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~---------p---~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e 123 (291)
+..+++++.+++|+++++.|.+.+.|+++.+ | .++|+++.+.||+++ +|++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 4678899999999999999998888876533 5 589999999999999 99999999999875555566
Q ss_pred HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCE-EEEEee
Q 022844 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQ 202 (291)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g-~~LnG~ 202 (291)
.++++++++++++..+ .+++..|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 6777777765544332 24456899999999999999999999999999999999999999999999999875 999999
Q ss_pred eecccCCCCC----CEEEEEEEeCC----CCCeEEEEEeCCC----------CCeEEeccCCccCccccceeeEEEeeeE
Q 022844 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF 264 (291)
Q Consensus 203 K~~it~~~~a----~~~lv~a~~~~----~~~~~~flV~~~~----------~Gv~~~~~~~~~G~r~~~~~~v~f~~v~ 264 (291)
|+|||++..+ ++++|+||+++ .+|+++|+||++. +||++.+.++++|++++++++|.|+|
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~-- 294 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN-- 294 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC--
Confidence 9999999863 68899999853 3679999999864 47888899999999999999999999
Q ss_pred eCCCCCcCCC-CcHHHHHHHHHhhccC
Q 022844 265 VPDEDRLPGV-NSFQDTSKVRLLCSKF 290 (291)
Q Consensus 265 Vp~~~vlg~~-~g~~~~~~~~~~~r~~ 290 (291)
+.+++||++ +|++.++.++|.+|+.
T Consensus 295 -~~~~llG~~~~Gl~~~~~~mn~aRl~ 320 (622)
T PTZ00456 295 -SVGYLIGEPNAGMKQMFTFMNTARVG 320 (622)
T ss_pred -hhHhhcCCCChHHHHHHHHHHHHHHH
Confidence 468999985 6999999999999863
No 26
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4.1e-39 Score=297.67 Aligned_cols=229 Identities=29% Similarity=0.374 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHhhccchHHHH-----HHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCc
Q 022844 58 EEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDAS 131 (291)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~p~~~~~-----d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~ 131 (291)
+++++++.+++|+++++.|....+ ++.+.+|.+++++|++.||+++ +|+++||.|.++.+.+.++|++++++++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~ 81 (380)
T cd01152 2 SEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAP 81 (380)
T ss_pred cHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCC
Confidence 578999999999999998876533 3456788999999999999999 9999999999999999999999999998
Q ss_pred chhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCC
Q 022844 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTF 211 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~ 211 (291)
+++.+..+ ..+...|..+|+++||++||+++++|+.+.++++|||+.|||...+.++++++++||+|||+|.|||++..
T Consensus 82 ~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ 160 (380)
T cd01152 82 VPFNQIGI-DLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160 (380)
T ss_pred cccchhhH-HHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccc
Confidence 87642222 23445788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHh
Q 022844 212 ADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLL 286 (291)
Q Consensus 212 a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~ 286 (291)
||+++|.|++++ ..++++|+||++.|||++.+.+.++| ++.++++.|+||+||.+++||+. .|+..+...++.
T Consensus 161 ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~ 238 (380)
T cd01152 161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNF 238 (380)
T ss_pred cCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHh
Confidence 999999999753 23689999999999999999998887 45889999999999999999874 589888888887
Q ss_pred hcc
Q 022844 287 CSK 289 (291)
Q Consensus 287 ~r~ 289 (291)
.|.
T Consensus 239 ~r~ 241 (380)
T cd01152 239 ERV 241 (380)
T ss_pred ccc
Confidence 764
No 27
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.4e-37 Score=289.82 Aligned_cols=222 Identities=24% Similarity=0.269 Sum_probs=196.1
Q ss_pred HHHHHHHHHhhccchHHHHHHhCC--------CC---hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (291)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~d~~~~--------~p---~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~ 130 (291)
++.+++|+.+++.|.+.++|+... +| .++|++|++.||+++ +|++|||.|.++.+...++|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 578899999999998888876654 88 678999999999999 999999999999999999999999998
Q ss_pred cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCC
Q 022844 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~ 209 (291)
++++.+..+ .+...+..+|+++||++|++++++|+.++|+++|||+.|||+..+.|+++++ +|||+|||+|.|||++
T Consensus 82 s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 887655444 3345678889999999999999999999999999999999999999999998 5679999999999999
Q ss_pred CCC----CEEEEEEEeCC----CCCeEEEEEeCCC-----CCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CC
Q 022844 210 TFA----DVLVIFARNTT----TNQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VN 275 (291)
Q Consensus 210 ~~a----~~~lv~a~~~~----~~~~~~flV~~~~-----~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~ 275 (291)
..| ++++|++++++ ..++++|+||++. |||++.+.|+++|++++++++|.|+||+|| +||. +.
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 58889998753 2368999999987 899999999999999999999999999999 7876 46
Q ss_pred cHHHHHHHHHhhcc
Q 022844 276 SFQDTSKVRLLCSK 289 (291)
Q Consensus 276 g~~~~~~~~~~~r~ 289 (291)
|+...+..++..|+
T Consensus 237 g~~~~~~~l~~~r~ 250 (407)
T cd01153 237 GLAQMFAMMNGARL 250 (407)
T ss_pred cHHHHHHHHHHHHH
Confidence 89888888888765
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=2.4e-37 Score=310.12 Aligned_cols=238 Identities=19% Similarity=0.220 Sum_probs=201.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhC-------CCC-hHHHHHHH-hCcccCC-cccC---------------
Q 022844 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGG-TIKG--------------- 107 (291)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~-------~~p-~~~~~~l~-~~Gl~~~-~p~~--------------- 107 (291)
+.+|++++++++++++|+++++.|...++++.. .+| .+.|+++. ++||+++ +|++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 558999999999999999999888766655322 377 58888885 9999999 9985
Q ss_pred ---------CCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCC
Q 022844 108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (291)
Q Consensus 108 ---------~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp 177 (291)
+||.|+++.+++.++|++|+++.+...+ ..++...++..|..+|+++||++||+++++|++++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999987543221 112222334578899999999999999999999999999999
Q ss_pred C-CCCCCCCCceEEEEeCCEEEEEeeeecccCC--CCCCEEEEEEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCc
Q 022844 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGL 250 (291)
Q Consensus 178 ~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~--~~a~~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~ 250 (291)
+ +|||...+.|+|++++|||+|||+|+|||++ ..||+++|+|++++ .+++++|+||.+.|||++.+.++++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 7899999999999999999999999999999 46999999999742 246899999999999999999999999
Q ss_pred ccc--ceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhccC
Q 022844 251 RIV--QNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSKF 290 (291)
Q Consensus 251 r~~--~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~~ 290 (291)
+++ ++++|.|+||+||++++||+ ++|+..++..++.+|.+
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~ 682 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLH 682 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHH
Confidence 974 58899999999999999976 46898888888877653
No 29
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2e-37 Score=302.33 Aligned_cols=236 Identities=20% Similarity=0.291 Sum_probs=207.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhh--c-cchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844 49 YQFDDLLTSEEQAVRMKVRECMEKE--I-APIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (291)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~~~~~~--~-~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e 123 (291)
..|...++++++++++.+++|+.+. + .|....+++.+.++ .++++.+++.|++++ +|++ ++.++..+.|
T Consensus 55 ~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e 128 (686)
T PLN02636 55 EKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITE 128 (686)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHH
Confidence 3355567788889999999999877 3 56666667777888 889999999999998 7764 6778888999
Q ss_pred HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-
Q 022844 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE- 200 (291)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln- 200 (291)
++++.+.+++..+.+|..+....|..+||++||++|||++.+|+.++|||+|||++|||+..+.|+|+++ +|+|+||
T Consensus 129 ~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLnt 208 (686)
T PLN02636 129 AVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINT 208 (686)
T ss_pred HHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECC
Confidence 9999998877767788777778899999999999999999999999999999999999999999999998 6789999
Q ss_pred ----eeeecccCCCC-CCEEEEEEEeC---------CCCCeEEEEEeCC-------CCCeEEeccCCccCccccceeeEE
Q 022844 201 ----GQKRWIGNSTF-ADVLVIFARNT---------TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDIL 259 (291)
Q Consensus 201 ----G~K~~it~~~~-a~~~lv~a~~~---------~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~r~~~~~~v~ 259 (291)
|+|+||+|+.. ||+++|+|++. .+.|+++|+||.+ .|||++.+...++|+++..++.|.
T Consensus 209 P~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~ 288 (686)
T PLN02636 209 PNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALR 288 (686)
T ss_pred CCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEE
Confidence 99999999975 99999999974 1358999999987 599999999999999999999999
Q ss_pred EeeeEeCCCCCcCC-----------------CCcHHHHHHHHHhhccC
Q 022844 260 LKKVFVPDEDRLPG-----------------VNSFQDTSKVRLLCSKF 290 (291)
Q Consensus 260 f~~v~Vp~~~vlg~-----------------~~g~~~~~~~~~~~r~~ 290 (291)
||||+||.+++||+ ++||+.++..|+.+|..
T Consensus 289 FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~ 336 (686)
T PLN02636 289 FRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVG 336 (686)
T ss_pred EeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999952 35899999999998864
No 30
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.4e-36 Score=280.46 Aligned_cols=204 Identities=21% Similarity=0.288 Sum_probs=180.9
Q ss_pred HHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHH
Q 022844 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (291)
Q Consensus 66 ~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~ 144 (291)
++++.. .+.+.+.++|+.+.+|.+.|+.|++.||+++ +|++|||.|+++.+.+.++|++++.|+++++.+..|.. +.
T Consensus 3 ~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~ 80 (377)
T cd01163 3 ARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FV 80 (377)
T ss_pred HHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HH
Confidence 344343 4667778888999999999999999999999 99999999999999999999999999998877666643 34
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCC
Q 022844 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT 224 (291)
Q Consensus 145 ~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~ 224 (291)
..+..+|+++||++|++++++|++++ .++|||++|+ .....++++++++||+|||+|.|||++..||+++|.+++++
T Consensus 81 ~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~- 157 (377)
T cd01163 81 EALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE- 157 (377)
T ss_pred HHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC-
Confidence 68889999999999999999999655 5999999876 66777778888899999999999999999999999999754
Q ss_pred CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC
Q 022844 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274 (291)
Q Consensus 225 ~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~ 274 (291)
+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||..
T Consensus 158 ~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~ 207 (377)
T cd01163 158 GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRP 207 (377)
T ss_pred CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCC
Confidence 46789999999999999999999999999999999999999999999874
No 31
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-36 Score=281.77 Aligned_cols=233 Identities=23% Similarity=0.289 Sum_probs=189.5
Q ss_pred ccCCCCCccch-hccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHH
Q 022844 3 IHSSKHQDDVD-KNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEY 81 (291)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~ 81 (291)
|.+++||-..+ .+.|++|.|+.+.++++++|... +++|+.+..+. +++. ...
T Consensus 5 ~~~~~~~~~~~~sf~~~lF~g~~~~~~~~pyP~~~------------------~~~~~~~~~~~---~~~~----~~~-- 57 (520)
T PTZ00457 5 FSSAPRQYVRHASYAAGLFNFKIVPEEMFPYPCRK------------------LDGDEAENLQS---LLEQ----IRS-- 57 (520)
T ss_pred cccCccccccCccHHHHhhCcccchhhcCCCCCCC------------------CCHHHHHHHHH---HHHH----HHh--
Confidence 56678876554 46788999999999999877221 23344433332 2221 110
Q ss_pred HHhCCCChHHHHHHHhC-cccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHH
Q 022844 82 WEKAEFPFHVIPKLGAL-RVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY 159 (291)
Q Consensus 82 d~~~~~p~~~~~~l~~~-Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~ 159 (291)
.++++ ||+++ +|++|||.|+++.+++.++|++++.+.+.+..+..|+.++...|..+|+++||++|
T Consensus 58 ------------~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~ 125 (520)
T PTZ00457 58 ------------NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKY 125 (520)
T ss_pred ------------chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47799 99999 99999999999999999999999988776654445655666788899999999999
Q ss_pred HHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCCCEEEEEEEeCC----------CCCeE
Q 022844 160 LPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQIN 228 (291)
Q Consensus 160 l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a~~~lv~a~~~~----------~~~~~ 228 (291)
||++++|+.++++|++| ++|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .++++
T Consensus 126 Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git 203 (520)
T PTZ00457 126 LTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNS 203 (520)
T ss_pred HHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceE
Confidence 99999999999999988 8999999999999986 4579999999965 8999999999999741 13689
Q ss_pred EEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhccC
Q 022844 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSKF 290 (291)
Q Consensus 229 ~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~~ 290 (291)
+|+||++.|||++.. ++|+|||| |.+++||+ ++||+.++..++.+|..
T Consensus 204 ~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~ 252 (520)
T PTZ00457 204 FFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYL 252 (520)
T ss_pred EEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 999999999999863 69999997 99999997 47999999999988864
No 32
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.8e-34 Score=278.88 Aligned_cols=207 Identities=22% Similarity=0.299 Sum_probs=181.6
Q ss_pred HHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHH
Q 022844 81 YWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKY 159 (291)
Q Consensus 81 ~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~ 159 (291)
.++...++.+.++++.+.|+.++ +|++ |.+ ++...+.++|++++.+.+++..+.+|..+....|..+||++||++|
T Consensus 100 ~~~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~ 176 (680)
T PLN02312 100 MEQQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKW 176 (680)
T ss_pred HHHHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHH
Confidence 34566788899999999999998 7874 333 5777889999999998887766777776777789999999999999
Q ss_pred HHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccCC-CCCCEEEEEEEeCC---CCCeE
Q 022844 160 LPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFADVLVIFARNTT---TNQIN 228 (291)
Q Consensus 160 l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~~-~~a~~~lv~a~~~~---~~~~~ 228 (291)
||++.+|+.++|+|+|||++|||+..+.|+|+++ +++|+|| |+|+||+|+ ..|++++|+||+.. +.|++
T Consensus 177 L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~ 256 (680)
T PLN02312 177 LKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVH 256 (680)
T ss_pred HHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeE
Confidence 9999999999999999999999999999999998 4679999 799999998 78999999999852 35799
Q ss_pred EEEEe---CC---CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-----------------CCcHHHHHHHHH
Q 022844 229 GYLVK---KD---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVRL 285 (291)
Q Consensus 229 ~flV~---~~---~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-----------------~~g~~~~~~~~~ 285 (291)
+|+|| .+ .|||++.+...++|+++..++.|.||||+||.+++||+ ++||..++..|+
T Consensus 257 ~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~ 336 (680)
T PLN02312 257 AFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLT 336 (680)
T ss_pred EEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHH
Confidence 99998 23 89999999999999999999999999999999999983 458999899999
Q ss_pred hhccC
Q 022844 286 LCSKF 290 (291)
Q Consensus 286 ~~r~~ 290 (291)
.+|..
T Consensus 337 ~~R~~ 341 (680)
T PLN02312 337 SGRVT 341 (680)
T ss_pred HHHHH
Confidence 88864
No 33
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.5e-33 Score=261.91 Aligned_cols=215 Identities=19% Similarity=0.203 Sum_probs=175.6
Q ss_pred HHHHHhhccchHHHHHHhCC------CC---hHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHH
Q 022844 67 RECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (291)
Q Consensus 67 ~~~~~~~~~p~~~~~d~~~~------~p---~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~ 137 (291)
.++++++ .|...++|+.+. +| +++++++.+.||++++|+++|+.| ......+.+.++..+......+.
T Consensus 38 ~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~ 114 (418)
T cd01154 38 ARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINIEDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLT 114 (418)
T ss_pred HHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccCCchhhCCCc--HHHHHHHHHHHHhcchhccCcHH
Confidence 3445555 677778887776 67 778999999999998555666544 22333455666666554444333
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHhcCC----ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCC
Q 022844 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFA 212 (291)
Q Consensus 138 ~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~----~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a 212 (291)
.+. .++..|..+|+++|| +|||++++|+ +++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+|++ .|
T Consensus 115 ~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~A 191 (418)
T cd01154 115 MTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LA 191 (418)
T ss_pred HHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-cc
Confidence 443 566789999988865 6999999997 89999999999999999999999999 8899999999999999 99
Q ss_pred CEEEEEEEeCC----CCCeEEEEEeCCCC-----CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHH
Q 022844 213 DVLVIFARNTT----TNQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSK 282 (291)
Q Consensus 213 ~~~lv~a~~~~----~~~~~~flV~~~~~-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~ 282 (291)
|+++|+||+++ .+++++|+||++.| ||++.+.++++|+|++++++|.|+|| .+++||+ ++|++.++.
T Consensus 192 d~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~ 268 (418)
T cd01154 192 DAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILE 268 (418)
T ss_pred CEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHH
Confidence 99999999863 25799999999875 99999999999999999999999998 3789987 469999999
Q ss_pred HHHhhccC
Q 022844 283 VRLLCSKF 290 (291)
Q Consensus 283 ~~~~~r~~ 290 (291)
+++..|+.
T Consensus 269 ~l~~~R~~ 276 (418)
T cd01154 269 MLNISRLD 276 (418)
T ss_pred HHHHHHHH
Confidence 99998863
No 34
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=99.97 E-value=7e-32 Score=227.02 Aligned_cols=193 Identities=21% Similarity=0.252 Sum_probs=162.2
Q ss_pred HHhCcccCC-cc---cCCCCCCccHHHHHHHHHHHHccCCcchhH-HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCce
Q 022844 95 LGALRVAGG-TI---KGYGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (291)
Q Consensus 95 l~~~Gl~~~-~p---~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~ 169 (291)
.+..|++.+ +| ..| |.|++.++++.++|.+|+.....-++ ........+.+|.+||+++||.+||-+++.|+..
T Consensus 36 aK~eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ir 114 (392)
T KOG1469|consen 36 AKVEGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIR 114 (392)
T ss_pred HHhcchHHhhhHHHHHhh-ccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCce
Confidence 346899999 77 345 56999999999999999965433322 2233446678999999999999999999999999
Q ss_pred eEEEecCCC-CCCCCCCCceEEEEeCCEEEEEeeeecccCCC--CCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEE
Q 022844 170 ACWALTEPA-YGSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYLVKKDAPGLTV 241 (291)
Q Consensus 170 ~~~a~tEp~-~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~--~a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~ 241 (291)
.|||+|||+ +.||+.++.+..+++++-|+|||.|||+||+. .+.+.++..+++.+ ...|+.|||.++|||.+
T Consensus 115 ScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvki 194 (392)
T KOG1469|consen 115 SCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKI 194 (392)
T ss_pred eeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeE
Confidence 999999999 69999999999999999999999999999985 46788888888643 45799999999999999
Q ss_pred eccCCccCcccc--ceeeEEEeeeEeCCCCCc-CCCCcHHHHHHHHHhhc
Q 022844 242 TKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVRLLCS 288 (291)
Q Consensus 242 ~~~~~~~G~r~~--~~~~v~f~~v~Vp~~~vl-g~~~g~~~~~~~~~~~r 288 (291)
.++.+..|.... +..+|+|+||+||..|+| |++.||.+.+..+.-+|
T Consensus 195 iRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGR 244 (392)
T KOG1469|consen 195 IRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGR 244 (392)
T ss_pred eeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcH
Confidence 999999998766 567999999999999877 77889987766555444
No 35
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.97 E-value=1.3e-30 Score=240.08 Aligned_cols=185 Identities=19% Similarity=0.218 Sum_probs=157.7
Q ss_pred hccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcC
Q 022844 73 EIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG 151 (291)
Q Consensus 73 ~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~G 151 (291)
.+.+.+.++|+.+.+|.++|+.|++.||+++ +|++|||.|+++.+.+.++|+++++|++++++...++ .....+..++
T Consensus 9 ~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~ 87 (370)
T cd01159 9 LIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFP 87 (370)
T ss_pred HHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCC
Confidence 4667888889999999999999999999999 9999999999999999999999999999887654443 4445777889
Q ss_pred CHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCC---CCCeE
Q 022844 152 SEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQIN 228 (291)
Q Consensus 152 t~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~---~~~~~ 228 (291)
+++|++.|++.. .+ ..+ | ...+.|+|++++|||+|||+|.|||++..+|+++|.|++++ ..+++
T Consensus 88 ~~~~~~~~~~~~-~~--~~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~ 154 (370)
T cd01159 88 PEAQEEVWGDGP-DT--LLA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPR 154 (370)
T ss_pred HHHHHHHhCCCC-Cc--eEE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcce
Confidence 999998887632 11 111 1 12356789999999999999999999999999999999753 34689
Q ss_pred EEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 229 ~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
+|+||++ ||++.+.|+++|+|++++++|.|+||+||++++|+.
T Consensus 155 ~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~ 197 (370)
T cd01159 155 AFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTA 197 (370)
T ss_pred EEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecc
Confidence 9999987 999999999999999999999999999999999974
No 36
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.97 E-value=7.5e-29 Score=224.35 Aligned_cols=189 Identities=34% Similarity=0.517 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHHH
Q 022844 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (291)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~ 137 (291)
+++++++.+++|+.+++.+.....++ .+...|+.+++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence 57889999999999999887775444 444557777777776
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEE
Q 022844 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (291)
Q Consensus 138 ~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv 217 (291)
++..+|..+|+++||++||+.+.+|+.++++++|||..|||...+.++++++++||+|||+|.|+|++..||+++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 2335677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC----CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhcc
Q 022844 218 FARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCSK 289 (291)
Q Consensus 218 ~a~~~~----~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r~ 289 (291)
.+++++ ..++.+|+||++.|||++.+.|.++|+++++++++.|+||+||.+++|+.. .|+......+...|+
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~ 195 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRL 195 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 999753 246889999999999999999999999999999999999999999999874 577666666665553
No 37
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.96 E-value=1.5e-28 Score=233.48 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=151.0
Q ss_pred hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 022844 89 FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (291)
Q Consensus 89 ~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~ 167 (291)
+++++.+.+.||.++ .++++| .+ ......+.+.+-..+-+...+.. ....++..+..+|+++||++|||++++|+
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~g~~cp~-~mT~~a~~~l~~~~~e~~~~~lp~l~sg~ 164 (538)
T PRK11561 89 HLLMQGLCANRVHNLAWEEDAR-SG--AFVARAARFMLHAQVEAGTLCPI-TMTFAATPLLLQMLPAPFQDWLTPLLSDR 164 (538)
T ss_pred HHHHHHHHHcCCccCCCCCccC-ch--HHHHHHHHHHHHhhhhHHhhchH-HHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 356666778999887 555554 22 22223333444332222222222 11234456677789999999999999997
Q ss_pred -------------ceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEe
Q 022844 168 -------------TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233 (291)
Q Consensus 168 -------------~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~ 233 (291)
+++++++|||++|||+..+.|+|++. +|+|+|||+|+||| +..||+++|+||++ +|+++|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp 241 (538)
T PRK11561 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVP 241 (538)
T ss_pred cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEE
Confidence 45699999999999999999999994 66799999999999 68899999999986 589999999
Q ss_pred CCCC-----CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhccC
Q 022844 234 KDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSKF 290 (291)
Q Consensus 234 ~~~~-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~~ 290 (291)
++.| ||++.+.++++|+|++++++|.|+|| .+++||+ ++|++.++.++|.+|+.
T Consensus 242 ~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~ 301 (538)
T PRK11561 242 RFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFD 301 (538)
T ss_pred CCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHH
Confidence 9988 79999999999999999999999999 4789997 46999999999999864
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.96 E-value=7.7e-29 Score=240.57 Aligned_cols=177 Identities=26% Similarity=0.330 Sum_probs=155.9
Q ss_pred cHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe
Q 022844 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (291)
Q Consensus 114 ~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~ 193 (291)
++.+...+.|++++.+++++..+.+|..+....|..+||++|+++|||++.+|+.++|+|+|||++|||+..+.|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 45677888999999888876656677667777899999999999999999999999999999999999999999999998
Q ss_pred C--CEEEEE-----eeeecccCCC-CCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccCccccce
Q 022844 194 E--GGWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 255 (291)
Q Consensus 194 ~--~g~~Ln-----G~K~~it~~~-~a~~~lv~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~r~~~~ 255 (291)
+ ++|+|| |+|+||+|+. .|++.+|+|++. ++.|+++|+||.. .|||++.+...++|+++..+
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999975 599999999973 2358999999963 39999999999999999999
Q ss_pred eeEEEeeeEeCCCCCcCC-----------------CCcHHHHHHHHHhhccC
Q 022844 256 GDILLKKVFVPDEDRLPG-----------------VNSFQDTSKVRLLCSKF 290 (291)
Q Consensus 256 ~~v~f~~v~Vp~~~vlg~-----------------~~g~~~~~~~~~~~r~~ 290 (291)
+.|.|+||+||.+++||+ +.|+..++..++.+|+.
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ 291 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVG 291 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHH
Confidence 999999999999999985 24788888888877753
No 39
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.95 E-value=2.2e-27 Score=230.56 Aligned_cols=154 Identities=22% Similarity=0.391 Sum_probs=133.6
Q ss_pred HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccC
Q 022844 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN 208 (291)
Q Consensus 136 ~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~ 208 (291)
+.+|..+....|..+||++||++|||++.+|+.++|+|+|||++|||+..+.|+|+++ +++|+|| |+|+||+|
T Consensus 95 ~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~ 174 (646)
T PTZ00460 95 STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGE 174 (646)
T ss_pred EEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCC
Confidence 3455555556788999999999999999999999999999999999999999999985 5779998 99999997
Q ss_pred -CCCCCEEEEEEEeC---CCCCeEEEEEeC-------CCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC----
Q 022844 209 -STFADVLVIFARNT---TTNQINGYLVKK-------DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---- 273 (291)
Q Consensus 209 -~~~a~~~lv~a~~~---~~~~~~~flV~~-------~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~---- 273 (291)
+..|++++|+||+. .+.|+++|+||. ..|||++.+...++|+++..++.|.|+||+||.+++||+
T Consensus 175 ~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v 254 (646)
T PTZ00460 175 LGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKV 254 (646)
T ss_pred CCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCccccc
Confidence 68899999999984 235899999993 249999999999999999999999999999999999985
Q ss_pred ---CC----c-HHHHHHHHHhhcc
Q 022844 274 ---VN----S-FQDTSKVRLLCSK 289 (291)
Q Consensus 274 ---~~----g-~~~~~~~~~~~r~ 289 (291)
+. | ++..+..+...|.
T Consensus 255 ~~~G~~~~~g~~~~~~~~l~~~R~ 278 (646)
T PTZ00460 255 SEDGQVERQGNPKVSYASMMYMRN 278 (646)
T ss_pred CCCCccccCCcHHHHHHHHHHHHH
Confidence 21 4 6777777777664
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=99.93 E-value=3.1e-25 Score=216.04 Aligned_cols=136 Identities=31% Similarity=0.502 Sum_probs=121.7
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccCC-
Q 022844 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS- 209 (291)
Q Consensus 138 ~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~~- 209 (291)
+|..+....|..+||++||++|||++.+|+.++|+|+|||++|||+..+.|+|+++ +++|+|| |+|+||+|+
T Consensus 101 ~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~ 180 (664)
T PLN02443 101 LHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLG 180 (664)
T ss_pred ehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCc
Confidence 45445556788899999999999999999999999999999999999999999998 5779998 999999997
Q ss_pred CCCCEEEEEEEeC---CCCCeEEEEEeCC-------CCCeEEeccCCccC---ccccceeeEEEeeeEeCCCCCcCC
Q 022844 210 TFADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 210 ~~a~~~lv~a~~~---~~~~~~~flV~~~-------~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
..|++++|+|++. .+.|+++|+||.+ .|||++.+...++| .++..++.|.|+||+||.+++||+
T Consensus 181 ~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~ 257 (664)
T PLN02443 181 KVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR 257 (664)
T ss_pred ccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence 6899999999973 2358999999975 79999999999999 556889999999999999999975
No 41
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.84 E-value=8.1e-21 Score=145.54 Aligned_cols=112 Identities=45% Similarity=0.525 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchh
Q 022844 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCST 134 (291)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~ 134 (291)
|++++++++.+++|+++++.|...++|+.+.+|+++|+++++.||+++ +|+++||.|+++.+.+.+++++++++.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 578999999999999999999999998888999999999999999999 9999999999999999999999999999888
Q ss_pred HHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 022844 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (291)
Q Consensus 135 ~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~ 167 (291)
.+.+|+++++..|..+|+++||++|||++++|+
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 777887677789999999999999999999996
No 42
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=4.8e-19 Score=162.34 Aligned_cols=187 Identities=25% Similarity=0.362 Sum_probs=155.5
Q ss_pred HhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHH
Q 022844 83 EKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161 (291)
Q Consensus 83 ~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~ 161 (291)
+.+++-..-|..|.+.|.+.. ..+.. --...-...+.|.++..+.+++.-+++|..+....+..+||+..++ |+.
T Consensus 74 ~qRel~~~r~~~l~~~gv~~~~~~~~~---~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~ 149 (661)
T KOG0135|consen 74 EQRELCMKRIKRLVELGVFKFWLVEDG---PEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQ 149 (661)
T ss_pred HHHHHHHHHHHHHHHhccCcceeecCc---hHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHh
Confidence 333444455667777766644 22221 1123456778999999999999999999888888999999999998 999
Q ss_pred HHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccCC-CCCCEEEEEEEe--C-CCCCeEEE
Q 022844 162 SLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFADVLVIFARN--T-TTNQINGY 230 (291)
Q Consensus 162 ~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~~-~~a~~~lv~a~~--~-~~~~~~~f 230 (291)
.+-.-+.++|||+||-++||+...++|+|+.+ .+.|+|| ..|+||.|. ..|++.+|+|+. + .+.|+..|
T Consensus 150 ~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~F 229 (661)
T KOG0135|consen 150 KTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGF 229 (661)
T ss_pred hhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeE
Confidence 99999999999999999999999999999987 5669998 679999986 578999999986 2 35789999
Q ss_pred EEeCC-------CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844 231 LVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 231 lV~~~-------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
+|+.. -|||+|...-+|.|+.|..++-+.|+||+||.+++|.+
T Consensus 230 iiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr 279 (661)
T KOG0135|consen 230 IIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNR 279 (661)
T ss_pred EEEeecccccCCCCCceecccccccccccccCceEEEecccCchHHHhhh
Confidence 99953 57999999999999999999999999999999999954
No 43
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.66 E-value=2.2e-16 Score=103.64 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeC
Q 022844 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (291)
Q Consensus 171 ~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~ 222 (291)
|+|+|||++|+|+..++|+|++++++|+|||+|+||+++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.57 E-value=3.2e-14 Score=134.38 Aligned_cols=135 Identities=22% Similarity=0.281 Sum_probs=104.1
Q ss_pred HHHhcCCH--HHHHHHHHHHhcCCceeEEEecCCCC-CC-------CCCCCceEEEEeCCEEEEEeeeecccCCCCCCEE
Q 022844 146 TIALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GS-------DASALNTTATKVEGGWILEGQKRWIGNSTFADVL 215 (291)
Q Consensus 146 ~l~~~Gt~--~qk~~~l~~l~~G~~~~~~a~tEp~~-Gs-------d~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~ 215 (291)
.+..++++ +-..+|+..+....+..+.+++.|.. -| |+...--..+++++||+|||.|.|+|++ .||++
T Consensus 117 ~~~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~ 195 (477)
T TIGR02309 117 YFGKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEI 195 (477)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceE
Confidence 33445543 34568999999999999999999873 12 2221112334678899999999999997 99999
Q ss_pred EEEEEeCCC----CC--eEEEEEeCCCCCeEEeccCCccCcccc-----------ceeeEEEeeeEeCCCCC--cCCC--
Q 022844 216 VIFARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV-- 274 (291)
Q Consensus 216 lv~a~~~~~----~~--~~~flV~~~~~Gv~~~~~~~~~G~r~~-----------~~~~v~f~~v~Vp~~~v--lg~~-- 274 (291)
+|+++++.. ++ .++|+||.++|||++.....++|.++. ..+.|.||||+||.|+| +|+.
T Consensus 196 ~V~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~ 275 (477)
T TIGR02309 196 LIFPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVEL 275 (477)
T ss_pred EEeccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHH
Confidence 999987531 23 689999999999999999999999876 77999999999999999 8874
Q ss_pred --CcHHHHH
Q 022844 275 --NSFQDTS 281 (291)
Q Consensus 275 --~g~~~~~ 281 (291)
.||....
T Consensus 276 a~~~f~~~~ 284 (477)
T TIGR02309 276 CNNAYAATG 284 (477)
T ss_pred HHHHHHHHH
Confidence 3554443
No 45
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.55 E-value=6e-14 Score=131.71 Aligned_cols=137 Identities=27% Similarity=0.405 Sum_probs=119.6
Q ss_pred HHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCC--EEEEE-----eeeecccC
Q 022844 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG--GWILE-----GQKRWIGN 208 (291)
Q Consensus 136 ~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~--g~~Ln-----G~K~~it~ 208 (291)
+.+|..+-...|..-||+||.++||++....++++|+|-||-++|+++..+.|+|+.+.. .|+|| ..|||..+
T Consensus 111 l~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGg 190 (670)
T KOG0136|consen 111 LALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGG 190 (670)
T ss_pred hhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCc
Confidence 345655666788889999999999999999999999999999999999999999998765 48876 89999976
Q ss_pred -CCCCCEEEEEEEe---CCCCCeEEEEEeCC-------CCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcC
Q 022844 209 -STFADVLVIFARN---TTTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP 272 (291)
Q Consensus 209 -~~~a~~~lv~a~~---~~~~~~~~flV~~~-------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg 272 (291)
|..+.+.+|.|+. +..-|+..|+||.. -|||+++++-.|||..+..++-+.|+||+||.+++|-
T Consensus 191 LG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLm 265 (670)
T KOG0136|consen 191 LGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLM 265 (670)
T ss_pred cccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhh
Confidence 4568899999986 23467889999963 5799999999999999999999999999999999884
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.67 E-value=2.1e-07 Score=81.11 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCC--CCCC----CCCceEE-EEeCCEEEEEeeeecccCCCCCCEEEEEEEeC----
Q 022844 154 EQKQKYLPSLAQLNTIACWALTEPAY--GSDA----SALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIFARNT---- 222 (291)
Q Consensus 154 ~qk~~~l~~l~~G~~~~~~a~tEp~~--Gsd~----~~~~t~a-~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~---- 222 (291)
+-..+|+..+....+..+.+++.|.. +..+ ..+-.+. .++++|.+|+|.|...|+++.+|.++|+-...
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 44567889999999999999999973 2222 1123333 45789999999999999999999999875432
Q ss_pred CCCCeEEEEEeCCCCCeEEeccCCccCccc------------cceeeEEEeeeEeCCCCCc
Q 022844 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRI------------VQNGDILLKKVFVPDEDRL 271 (291)
Q Consensus 223 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~------------~~~~~v~f~~v~Vp~~~vl 271 (291)
+.+--..|.||.++||+++.-.......+. -.-+-|.||||+||.|+|+
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 122256799999999999865443333221 1246899999999999874
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=3.3e-06 Score=78.12 Aligned_cols=117 Identities=18% Similarity=0.324 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCceeEEEecCCCCC-CC-CCC-----CceEE-EEeCCEEEEEeeeecccCCCCCCEEEEE-EEe--CC
Q 022844 155 QKQKYLPSLAQLNTIACWALTEPAYG-SD-ASA-----LNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIF-ARN--TT 223 (291)
Q Consensus 155 qk~~~l~~l~~G~~~~~~a~tEp~~G-sd-~~~-----~~t~a-~~~~~g~~LnG~K~~it~~~~a~~~lv~-a~~--~~ 223 (291)
--.+|+..+....+..+-|+|.|... |- +.. +-.+. ..+++|.+|.|.|..+|++..+|.++|+ .+. ++
T Consensus 132 n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~ 211 (493)
T COG2368 132 NAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQED 211 (493)
T ss_pred HHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCC
Confidence 44589999999999899999998731 11 111 22222 3568999999999999999999998887 333 22
Q ss_pred CCC-eEEEEEeCCCCCeEEeccCC-ccCc--ccc------------ceeeEEEeeeEeCCCCCc
Q 022844 224 TNQ-INGYLVKKDAPGLTVTKIEN-KIGL--RIV------------QNGDILLKKVFVPDEDRL 271 (291)
Q Consensus 224 ~~~-~~~flV~~~~~Gv~~~~~~~-~~G~--r~~------------~~~~v~f~~v~Vp~~~vl 271 (291)
+.. -..|.+|.++|||.+.-... ..+. .+. ..+-|.||||+||-|+|+
T Consensus 212 d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf 275 (493)
T COG2368 212 DKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVF 275 (493)
T ss_pred CCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhhee
Confidence 223 45799999999988754331 1111 111 234599999999999988
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.30 E-value=3.3e-06 Score=80.35 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCC-CC-CC---CCCc-eEEEEeCCEEEEEeeeecccCCCCCCEEEE-EEEe---CC
Q 022844 154 EQKQKYLPSLAQLNTIACWALTEPAY-GS-DA---SALN-TTATKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT 223 (291)
Q Consensus 154 ~qk~~~l~~l~~G~~~~~~a~tEp~~-Gs-d~---~~~~-t~a~~~~~g~~LnG~K~~it~~~~a~~~lv-~a~~---~~ 223 (291)
+-..+|+..+....+..+.+++.|.. -| .+ ..+- -..+++++|.+|+|.|...|++..+|.++| .... .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 34568899999999999999999873 11 11 1112 233457889999999999999999998888 4332 12
Q ss_pred CCC-eEEEEEeCCCCCeEEeccCCcc------C--cc-------ccceeeEEEeeeEeCCCCCc
Q 022844 224 TNQ-INGYLVKKDAPGLTVTKIENKI------G--LR-------IVQNGDILLKKVFVPDEDRL 271 (291)
Q Consensus 224 ~~~-~~~flV~~~~~Gv~~~~~~~~~------G--~r-------~~~~~~v~f~~v~Vp~~~vl 271 (291)
++. -..|.||.++|||++.-..... + .. .-.-+-|.||||+||.|+|+
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF 279 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVL 279 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHce
Confidence 233 4569999999999987433211 0 00 11346799999999999998
No 49
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=91.40 E-value=0.2 Score=38.62 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.0
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCc
Q 022844 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNT 168 (291)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~ 168 (291)
.+|.++-...|...||+||+++|||...+.+.
T Consensus 93 ~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 93 GLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 36766677899999999999999999887764
No 50
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=59.65 E-value=34 Score=29.13 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=48.0
Q ss_pred hCCCChHHHHHHHh-CcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHH
Q 022844 84 KAEFPFHVIPKLGA-LRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161 (291)
Q Consensus 84 ~~~~p~~~~~~l~~-~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~ 161 (291)
+..++.++.+++|. +|-..+ +|-+-. +++++-.+++.|- |+ ..+|+..|.++.|++.|.
T Consensus 98 etTISAKvm~~ikavLgaTKiDLPVDIN----DPYDlGLLLRhLR------------HH---SNLLAnIgdP~VreqVLs 158 (238)
T PF02084_consen 98 ETTISAKVMEDIKAVLGATKIDLPVDIN----DPYDLGLLLRHLR------------HH---SNLLANIGDPEVREQVLS 158 (238)
T ss_pred CccccHHHHHHHHHHhcccccccccccC----ChhhHHHHHHHHH------------HH---HHHHhhcCCHHHHHHHHH
Confidence 55778888988886 788888 886543 4677777776652 33 257889999999999998
Q ss_pred HHhcC
Q 022844 162 SLAQL 166 (291)
Q Consensus 162 ~l~~G 166 (291)
.+...
T Consensus 159 AMqEe 163 (238)
T PF02084_consen 159 AMQEE 163 (238)
T ss_pred HHhhh
Confidence 87755
No 51
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=49.69 E-value=59 Score=21.86 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccchHHHHHHhCCCC-----hHHHHHHHhCcccC
Q 022844 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAG 102 (291)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~-~~p~~~~~d~~~~~p-----~~~~~~l~~~Gl~~ 102 (291)
.||+.|+.+++-+.+|..++ ..|..++.-+.-.+. ...++.|.+.|++.
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 47899999999999988764 557666654443332 35677788888864
No 52
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=34.62 E-value=59 Score=21.26 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=23.5
Q ss_pred EEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEE
Q 022844 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232 (291)
Q Consensus 197 ~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV 232 (291)
|-|.|+|.||-.|+.-.-+-+.-+.+...+..+++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 457899999999998877666554443223344444
No 53
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=28.23 E-value=1.9e+02 Score=20.76 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHH
Q 022844 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96 (291)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~ 96 (291)
++++..+++.++++.+.+.|...-..-...++.+.++.+.
T Consensus 2 ~~~k~nL~af~~yi~ktl~P~yIl~~m~~~~~~e~v~~I~ 41 (89)
T cd08816 2 AAEKRNLQRFRDYIKKILRPSYILGFMTTWLEDEEVERIL 41 (89)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCHHHHHHHH
Confidence 5678888899999999988876655556667777666543
No 54
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=24.78 E-value=1.8e+02 Score=22.82 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=30.7
Q ss_pred eCCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCC-----CCCeEEeccCCc--------cCccccceeeEE
Q 022844 193 VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKD-----APGLTVTKIENK--------IGLRIVQNGDIL 259 (291)
Q Consensus 193 ~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~-----~~Gv~~~~~~~~--------~G~r~~~~~~v~ 259 (291)
+.+.|.|+|+|+..--. ..+....+.+.|+|.. -|.|++...... ........+++.
T Consensus 67 ~~~~WlV~Grrrg~f~~----------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~~~~~~~~~~~~~~~~~~~~ev~ 136 (147)
T PF12584_consen 67 DSDNWLVSGRRRGVFSL----------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYDPSNISKGDSMPRLEPFPPCEVD 136 (147)
T ss_pred CCCcEEEeccCcceEEe----------cCCCeEEEEEEEEecccceecCCEEEEEeccCCCcccccccccccCCCceeEE
Confidence 45569999998754211 1111112455566643 455777655421 123334666766
Q ss_pred Eee
Q 022844 260 LKK 262 (291)
Q Consensus 260 f~~ 262 (291)
+.|
T Consensus 137 ~~n 139 (147)
T PF12584_consen 137 YRN 139 (147)
T ss_pred EcC
Confidence 655
Done!