Query 022844
Match_columns 291
No_of_seqs 226 out of 1629
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix5_A Acyl-coenzyme A oxidase 100.0 2.9E-51 9.8E-56 383.5 28.8 287 2-289 2-289 (436)
2 3sf6_A Glutaryl-COA dehydrogen 100.0 1.7E-48 5.9E-53 361.5 25.2 244 43-289 18-263 (403)
3 2d29_A Acyl-COA dehydrogenase; 100.0 4.3E-48 1.5E-52 357.0 26.8 240 50-289 2-250 (387)
4 3ii9_A Glutaryl-COA dehydrogen 100.0 5.8E-49 2E-53 363.9 20.4 244 46-289 10-256 (396)
5 3swo_A Glutaryl-COA dehydrogen 100.0 3.7E-48 1.3E-52 358.8 24.0 242 45-289 16-258 (399)
6 2jif_A Short/branched chain sp 100.0 8.7E-48 3E-52 356.9 26.4 260 4-289 3-267 (404)
7 2eba_A Putative glutaryl-COA d 100.0 9E-48 3.1E-52 354.7 25.2 242 47-289 3-246 (385)
8 3p4t_A Putative acyl-COA dehyd 100.0 1E-47 3.5E-52 356.3 25.3 243 47-289 18-265 (403)
9 3pfd_A Acyl-COA dehydrogenase; 100.0 8E-48 2.7E-52 355.9 23.7 238 51-289 15-257 (393)
10 1ukw_A Acyl-COA dehydrogenase; 100.0 1.6E-47 5.4E-52 352.4 25.1 238 51-289 1-243 (379)
11 1buc_A Butyryl-COA dehydrogena 100.0 1.8E-47 6.1E-52 352.4 24.9 239 51-289 1-248 (383)
12 3nf4_A Acyl-COA dehydrogenase; 100.0 4.5E-47 1.5E-51 350.2 26.8 237 52-289 13-252 (387)
13 2vig_A Short-chain specific ac 100.0 1.8E-47 6.3E-52 353.3 23.7 239 51-289 2-245 (391)
14 2dvl_A Acyl-COA dehydrogenase; 100.0 4.1E-47 1.4E-51 348.7 25.2 234 54-289 2-237 (372)
15 1egd_A Medium chain acyl-COA d 100.0 3.6E-47 1.2E-51 351.9 24.4 239 50-289 11-257 (396)
16 1rx0_A Acyl-COA dehydrogenase 100.0 1.2E-46 4.3E-51 348.0 27.4 238 51-289 15-256 (393)
17 3r7k_A Probable acyl COA dehyd 100.0 4.5E-47 1.5E-51 352.0 23.8 240 50-289 24-268 (403)
18 2pg0_A Acyl-COA dehydrogenase; 100.0 1.2E-46 4.2E-51 347.1 26.6 237 51-289 5-250 (385)
19 1ivh_A Isovaleryl-COA dehydrog 100.0 9E-47 3.1E-51 349.0 24.0 237 53-289 11-256 (394)
20 2z1q_A Acyl-COA dehydrogenase; 100.0 8.2E-47 2.8E-51 364.5 23.5 252 15-289 9-265 (577)
21 1siq_A GCD, glutaryl-COA dehyd 100.0 3E-46 1E-50 345.2 24.5 241 47-289 6-249 (392)
22 3mpi_A Glutaryl-COA dehydrogen 100.0 3.2E-46 1.1E-50 345.5 21.7 237 51-289 1-247 (397)
23 4hr3_A Putative acyl-COA dehyd 100.0 4.9E-46 1.7E-50 346.3 21.4 239 51-289 5-273 (415)
24 2uxw_A VERY-long-chain specifi 100.0 9.7E-46 3.3E-50 358.3 23.2 256 13-289 23-294 (607)
25 3owa_A Acyl-COA dehydrogenase; 100.0 1.4E-45 4.8E-50 356.3 23.5 233 55-289 33-270 (597)
26 1r2j_A Protein FKBI; polyketid 100.0 3E-45 1E-49 335.6 21.2 223 64-289 2-227 (366)
27 2c12_A Nitroalkane oxidase; ox 100.0 2.4E-43 8.2E-48 330.4 22.0 238 51-289 2-278 (439)
28 3mkh_A Nitroalkane oxidase; ox 100.0 7.3E-44 2.5E-48 333.8 18.3 238 50-289 2-275 (438)
29 2wbi_A Acyl-COA dehydrogenase 100.0 5.6E-43 1.9E-47 326.9 18.9 239 48-289 16-281 (428)
30 3m9v_A FAD-dependent oxidoredu 100.0 3E-41 1E-45 316.2 21.2 226 50-281 15-253 (439)
31 3mxl_A Nitrososynthase; flavin 100.0 1.1E-41 3.6E-46 314.9 17.8 232 51-288 5-249 (395)
32 2or0_A Hydroxylase; APC7385, r 100.0 2E-38 6.9E-43 294.8 13.6 205 52-273 15-227 (414)
33 2rfq_A 3-HSA hydroxylase, oxyg 100.0 1.4E-36 4.9E-41 280.5 16.5 196 61-273 11-210 (394)
34 2jbr_A P-hydroxyphenylacetate 100.0 1.4E-36 5E-41 283.0 15.4 197 60-273 38-238 (422)
35 1w07_A Acyl-COA oxidase; oxido 100.0 9.8E-34 3.4E-38 276.7 13.0 208 57-273 29-257 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 5E-31 1.7E-35 251.9 16.4 189 89-289 89-300 (541)
37 2ddh_A Acyl-COA oxidase; beta 100.0 2.5E-29 8.5E-34 245.5 17.0 204 56-273 26-255 (661)
38 1u8v_A Gamma-aminobutyrate met 99.9 2.4E-26 8.3E-31 217.1 15.4 143 145-288 118-293 (490)
39 2yyk_A 4-hydroxyphenylacetate- 99.9 5.7E-25 2E-29 207.3 14.0 118 152-271 122-263 (481)
40 3hwc_A Chlorophenol-4-monooxyg 99.9 1.9E-23 6.3E-28 197.4 11.6 132 150-283 127-284 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.7 3.7E-16 1.3E-20 147.8 11.7 135 154-288 134-290 (517)
No 1
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=2.9e-51 Score=383.53 Aligned_cols=287 Identities=77% Similarity=1.232 Sum_probs=251.6
Q ss_pred cccCCCCCccchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHH
Q 022844 2 TIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEY 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~ 81 (291)
..+++..|.-.-.+.++.+++.++.+....++..++...+|+...|++.|++.+++|++++++.+++|+++++.|...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~ 81 (436)
T 2ix5_A 2 AVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEY 81 (436)
T ss_dssp ---------------CCSSSSSCCCCHHHHCCSSCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cchhhhhhhccccccchhhcCCChhhhhhhccccCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHH
Confidence 34444444444556778888888888876677777778899998899999999999999999999999999999988877
Q ss_pred HHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHH
Q 022844 82 WEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL 160 (291)
Q Consensus 82 d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l 160 (291)
++.+.+|.++|++|++.||+++ +| +|||.|+++.+.+.++|++++++++++.++.+|+.++...|..+|+++||++||
T Consensus 82 ~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l 160 (436)
T 2ix5_A 82 WEKAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYL 160 (436)
T ss_dssp HHHTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 7888999999999999999999 88 999999999999999999999999888766666556667889999999999999
Q ss_pred HHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeE
Q 022844 161 PSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240 (291)
Q Consensus 161 ~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~ 240 (291)
|++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|++++++++++|+||++.|||+
T Consensus 161 ~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~ 240 (436)
T 2ix5_A 161 PSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240 (436)
T ss_dssp HHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEE
T ss_pred HHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999987546799999999999999
Q ss_pred EeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHHHHhhcc
Q 022844 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVRLLCSK 289 (291)
Q Consensus 241 ~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~~~~r~ 289 (291)
+.+.++++|++++++++|.|+||+||++++||+.+|+..++..++..|.
T Consensus 241 v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~ 289 (436)
T 2ix5_A 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRV 289 (436)
T ss_dssp EEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHH
T ss_pred eeccccccCCCcCCceeEEeccEEECHHHcCCccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988889888888888775
No 2
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.7e-48 Score=361.53 Aligned_cols=244 Identities=36% Similarity=0.631 Sum_probs=229.8
Q ss_pred CCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCccHHHHHH
Q 022844 43 PCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAI 120 (291)
Q Consensus 43 ~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~ 120 (291)
...+||+.|++.++++++++++.+++|+.+++.|.+.+.++.+.+| .++|++|++.||+++ + ++|||.|+++.+++.
T Consensus 18 ~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~ 96 (403)
T 3sf6_A 18 RGADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAYGL 96 (403)
T ss_dssp CCHHHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHH
T ss_pred CCCcchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHHHH
Confidence 3455888999999999999999999999999999988889999999 999999999999999 9 999999999999999
Q ss_pred HHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEE
Q 022844 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILE 200 (291)
Q Consensus 121 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~Ln 200 (291)
++|++++++++++..+.+|..++...|..+|+++||++|||++++|++++|+++|||++|||+..++|+|++++|||+||
T Consensus 97 v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~ln 176 (403)
T 3sf6_A 97 ACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT 176 (403)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEE
T ss_pred HHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEE
Confidence 99999999998887776776566778999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHH
Q 022844 201 GQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDT 280 (291)
Q Consensus 201 G~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~ 280 (291)
|+|.||||+..||+++|+|+++ +|+++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||+++|+...
T Consensus 177 G~K~~is~a~~Ad~~~v~ar~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~ 254 (403)
T 3sf6_A 177 GTKMWITNGSVADVAVVWARTD--EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAP 254 (403)
T ss_dssp EEEEEEETGGGCSEEEEEEEET--TEEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHH
T ss_pred EEEEeecCCcccCEEEEEEEeC--CceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChhHHHH
Confidence 9999999999999999999986 47999999999999999999999999999999999999999999999987799999
Q ss_pred HHHHHhhcc
Q 022844 281 SKVRLLCSK 289 (291)
Q Consensus 281 ~~~~~~~r~ 289 (291)
+..++..|+
T Consensus 255 ~~~l~~~r~ 263 (403)
T 3sf6_A 255 LRCLNEARF 263 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888775
No 3
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=4.3e-48 Score=357.00 Aligned_cols=240 Identities=35% Similarity=0.495 Sum_probs=222.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (291)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~ 128 (291)
.|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus 2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 81 (387)
T 2d29_A 2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY 81 (387)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 478889999999999999999999999888888899999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccC
Q 022844 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~ 208 (291)
++++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 161 (387)
T 2d29_A 82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ 161 (387)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence 99888766666445667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC-------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHH
Q 022844 209 STFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (291)
Q Consensus 209 ~~~a~~~lv~a~~~~~-------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~ 280 (291)
+..||+++|+|+++++ .++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+. +|+..+
T Consensus 162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 241 (387)
T 2d29_A 162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241 (387)
T ss_dssp TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence 9999999999998632 26999999999999999999999999999999999999999999999974 689888
Q ss_pred HHHHHhhcc
Q 022844 281 SKVRLLCSK 289 (291)
Q Consensus 281 ~~~~~~~r~ 289 (291)
+..++..|+
T Consensus 242 ~~~l~~~r~ 250 (387)
T 2d29_A 242 LRVLDGGRI 250 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887775
No 4
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=5.8e-49 Score=363.89 Aligned_cols=244 Identities=34% Similarity=0.567 Sum_probs=221.6
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHH
Q 022844 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAE 124 (291)
Q Consensus 46 ~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~ 124 (291)
+|++.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+
T Consensus 10 ~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee 89 (396)
T 3ii9_A 10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE 89 (396)
T ss_dssp TSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 4778899999999999999999999999999988889999999999999999999999 999999999999999999999
Q ss_pred HHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeee
Q 022844 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (291)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~ 204 (291)
+++++++++..+.+|+.++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 169 (396)
T 3ii9_A 90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 169 (396)
T ss_dssp HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence 99999988776666655555678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeC--CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHH
Q 022844 205 WIGNSTFADVLVIFARNT--TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282 (291)
Q Consensus 205 ~it~~~~a~~~lv~a~~~--~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~ 282 (291)
||||+..||+++|.|+++ +.+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+++|+...+.
T Consensus 170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~~ 249 (396)
T 3ii9_A 170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 249 (396)
T ss_dssp EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHH
T ss_pred eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHHH
Confidence 999999999999999985 223589999999999999999999999999999999999999999999988889999988
Q ss_pred HHHhhcc
Q 022844 283 VRLLCSK 289 (291)
Q Consensus 283 ~~~~~r~ 289 (291)
.++..|.
T Consensus 250 ~l~~~r~ 256 (396)
T 3ii9_A 250 CLNSARY 256 (396)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888774
No 5
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.7e-48 Score=358.84 Aligned_cols=242 Identities=32% Similarity=0.602 Sum_probs=228.1
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (291)
Q Consensus 45 ~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e 123 (291)
.+|+++|++.++++++++++.+++|+.+++.|.+.+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+++.++|
T Consensus 16 ~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~e 94 (399)
T 3swo_A 16 PLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACM 94 (399)
T ss_dssp HHHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHH
Confidence 35888999999999999999999999999999988888999999999999999999999 9 999999999999999999
Q ss_pred HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeee
Q 022844 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK 203 (291)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K 203 (291)
++++++++++..+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|
T Consensus 95 el~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K 174 (399)
T 3swo_A 95 ELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTK 174 (399)
T ss_dssp HHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEE
T ss_pred HHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEE
Confidence 99999998877676675566788999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHH
Q 022844 204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283 (291)
Q Consensus 204 ~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~ 283 (291)
.||||+..||+++|+|+++ +|+++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||+++|+..++..
T Consensus 175 ~~vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~ 252 (399)
T 3swo_A 175 MWITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSC 252 (399)
T ss_dssp EEEETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHH
T ss_pred EeECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHH
Confidence 9999999999999999986 46999999999999999999999999999999999999999999999987799988888
Q ss_pred HHhhcc
Q 022844 284 RLLCSK 289 (291)
Q Consensus 284 ~~~~r~ 289 (291)
++..|.
T Consensus 253 l~~~r~ 258 (399)
T 3swo_A 253 LNEARF 258 (399)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887774
No 6
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=8.7e-48 Score=356.89 Aligned_cols=260 Identities=29% Similarity=0.432 Sum_probs=218.8
Q ss_pred cCCCCCccchhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHH
Q 022844 4 HSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE 83 (291)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~ 83 (291)
|...|..++...-.++|++.+ .|++.+++|++++++.+++|+++++.|...+.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~ 57 (404)
T 2jif_A 3 HHHHHSSGVDLGTENLYFQSM-------------------------APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDE 57 (404)
T ss_dssp ----------------------------------------------CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHH
T ss_pred ccccccchhhhhhhHHhcccc-------------------------cccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhh
Confidence 444566777777777777733 1334478999999999999999999998888888
Q ss_pred hCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHH
Q 022844 84 KAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPS 162 (291)
Q Consensus 84 ~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~ 162 (291)
.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++++.+.+|..++..+|..+|+++||++|||+
T Consensus 58 ~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~ 137 (404)
T 2jif_A 58 NSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQ 137 (404)
T ss_dssp HTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999999999999 99999999999999999999999999988877666655566788999999999999999
Q ss_pred HhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCe
Q 022844 163 LAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGL 239 (291)
Q Consensus 163 l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv 239 (291)
+++|. ++++++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|++++ ..++++|+||++.|||
T Consensus 138 ~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv 216 (404)
T 2jif_A 138 LTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGL 216 (404)
T ss_dssp HHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTE
T ss_pred HhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCe
Confidence 99986 7899999999999999999999999999999999999999999999999999853 2468999999999999
Q ss_pred EEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 240 ~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
++.+.++++|++++++++|.||||+||++++||+ ++|+..++..++.+|+
T Consensus 217 ~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~ 267 (404)
T 2jif_A 217 HIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRI 267 (404)
T ss_dssp EECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred EeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 4689888888887774
No 7
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=9e-48 Score=354.65 Aligned_cols=242 Identities=35% Similarity=0.634 Sum_probs=220.6
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (291)
Q Consensus 47 d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l 125 (291)
|.+.|++.++++++++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 82 (385)
T 2eba_A 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYEL 82 (385)
T ss_dssp CTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHH
Confidence 455678889999999999999999999999888888889999999999999999999 9999999999999999999999
Q ss_pred HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCC-CCCceEEEEeCCEEEEEeeee
Q 022844 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQKR 204 (291)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~-~~~~t~a~~~~~g~~LnG~K~ 204 (291)
++++++++..+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+ ..++|+|++++|||+|||+|.
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~ 162 (385)
T 2eba_A 83 ERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM 162 (385)
T ss_dssp HHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEE
T ss_pred HHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeee
Confidence 9999998877766655556788899999999999999999999999999999999999 899999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHHH
Q 022844 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVR 284 (291)
Q Consensus 205 ~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~~ 284 (291)
||||+..||+++|.|++++. .+++|+||++.|||++.+.|+++|++++++++|.|+||+||++++|..++|+..++..+
T Consensus 163 ~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l 241 (385)
T 2eba_A 163 WITNGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL 241 (385)
T ss_dssp EEETTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred ccCCCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHH
Confidence 99999999999999998632 38999999999999999999999999999999999999999999995567998888888
Q ss_pred Hhhcc
Q 022844 285 LLCSK 289 (291)
Q Consensus 285 ~~~r~ 289 (291)
+..|+
T Consensus 242 ~~~r~ 246 (385)
T 2eba_A 242 TQARF 246 (385)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 8
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=1e-47 Score=356.32 Aligned_cols=243 Identities=22% Similarity=0.285 Sum_probs=223.0
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (291)
Q Consensus 47 d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l 125 (291)
+.-.|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++
T Consensus 18 ~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 97 (403)
T 3p4t_A 18 GPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEM 97 (403)
T ss_dssp -----CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence 344588889999999999999999999999999899999999999999999999999 9999999999999999999999
Q ss_pred HccCCcc-hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeee
Q 022844 126 ARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (291)
Q Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~ 204 (291)
+++++++ ++.+..+..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 177 (403)
T 3p4t_A 98 HYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKT 177 (403)
T ss_dssp HHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred HHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEE
Confidence 9999988 665666655667789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHH
Q 022844 205 WIGNSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (291)
Q Consensus 205 ~it~~~~a~~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~ 281 (291)
||||+..||+++|+|++++ .+++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+. +|+..++
T Consensus 178 ~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~ 257 (403)
T 3p4t_A 178 YITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIA 257 (403)
T ss_dssp EEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred EecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHH
Confidence 9999999999999999864 257999999999999999999999999999999999999999999999874 6899888
Q ss_pred HHHHhhcc
Q 022844 282 KVRLLCSK 289 (291)
Q Consensus 282 ~~~~~~r~ 289 (291)
..++..|+
T Consensus 258 ~~l~~~r~ 265 (403)
T 3p4t_A 258 AAFVAERV 265 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887775
No 9
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=8e-48 Score=355.95 Aligned_cols=238 Identities=31% Similarity=0.426 Sum_probs=216.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|++++++
T Consensus 15 m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 3pfd_A 15 ELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVD 94 (393)
T ss_dssp -------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence 67789999999999999999999999998899999999999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
+++++++..+ .++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus 95 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 173 (393)
T 3pfd_A 95 CSASLIPAVN-KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNG 173 (393)
T ss_dssp HHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCC
Confidence 9988755554 355567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHH
Q 022844 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRL 285 (291)
Q Consensus 210 ~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~ 285 (291)
..||+++|+|+++++ +++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++..++
T Consensus 174 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~ 253 (393)
T 3pfd_A 174 GKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLD 253 (393)
T ss_dssp TTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred cccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHH
Confidence 999999999998632 5799999999999999999999999999999999999999999999997 469999998888
Q ss_pred hhcc
Q 022844 286 LCSK 289 (291)
Q Consensus 286 ~~r~ 289 (291)
..|.
T Consensus 254 ~~r~ 257 (393)
T 3pfd_A 254 HTRP 257 (393)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 8775
No 10
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.6e-47 Score=352.35 Aligned_cols=238 Identities=30% Similarity=0.449 Sum_probs=221.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
|++.++++++++++.+++|+++.+.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 56778999999999999999999999888888889999999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
++++..+..| .++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus 81 ~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 159 (379)
T 1ukw_A 81 MGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159 (379)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence 9888766666 466778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHH
Q 022844 210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRL 285 (291)
Q Consensus 210 ~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~ 285 (291)
..||+++|+|++++ .+++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+. +|+..++..++
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~ 239 (379)
T 1ukw_A 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239 (379)
T ss_dssp TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence 99999999999853 247899999999999999999999999999999999999999999999874 68988888888
Q ss_pred hhcc
Q 022844 286 LCSK 289 (291)
Q Consensus 286 ~~r~ 289 (291)
..|+
T Consensus 240 ~~r~ 243 (379)
T 1ukw_A 240 KTRI 243 (379)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7774
No 11
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.8e-47 Score=352.41 Aligned_cols=239 Identities=29% Similarity=0.400 Sum_probs=221.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCC---ccHHHHHHHHHHHH
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG---HSVTGAAIAIAEIA 126 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g---~~~~~~~~v~e~l~ 126 (291)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| +++.+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~ 80 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence 56779999999999999999999999888888999999999999999999999 999999999 99999999999999
Q ss_pred ccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeec
Q 022844 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW 205 (291)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~ 205 (291)
++|+++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~ 160 (383)
T 1buc_A 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (383)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence 9999888766666556677899999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHH
Q 022844 206 IGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTS 281 (291)
Q Consensus 206 it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~ 281 (291)
|||+..||+++|+|++++ .+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+ ++|+..++
T Consensus 161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 240 (383)
T 1buc_A 161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM 240 (383)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence 999999999999999863 24699999999999999999999999999999999999999999999997 46899888
Q ss_pred HHHHhhcc
Q 022844 282 KVRLLCSK 289 (291)
Q Consensus 282 ~~~~~~r~ 289 (291)
..++..|+
T Consensus 241 ~~l~~~r~ 248 (383)
T 1buc_A 241 MTLDGGRI 248 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 12
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=4.5e-47 Score=350.18 Aligned_cols=237 Identities=28% Similarity=0.409 Sum_probs=221.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (291)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~ 130 (291)
++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+++.++|+++++++
T Consensus 13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~ 92 (387)
T 3nf4_A 13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA 92 (387)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 5668999999999999999999999998899999999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~ 210 (291)
++++.+..|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+.
T Consensus 93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 171 (387)
T 3nf4_A 93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171 (387)
T ss_dssp HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence 9887776664 666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeC-CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHHhhc
Q 022844 211 FADVLVIFARNT-TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRLLCS 288 (291)
Q Consensus 211 ~a~~~lv~a~~~-~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~~~r 288 (291)
.||+++|+|+++ +.+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+. .|+...+..++..|
T Consensus 172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 251 (387)
T 3nf4_A 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR 251 (387)
T ss_dssp TCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH
T ss_pred ccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 999999999985 3467999999999999999999999999999999999999999999999974 68998888888777
Q ss_pred c
Q 022844 289 K 289 (291)
Q Consensus 289 ~ 289 (291)
+
T Consensus 252 ~ 252 (387)
T 3nf4_A 252 L 252 (387)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=1.8e-47 Score=353.30 Aligned_cols=239 Identities=31% Similarity=0.440 Sum_probs=218.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus 2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 81 (391)
T 2vig_A 2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC 81 (391)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 45678999999999999999999999888888899999999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
++++..+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 161 (391)
T 2vig_A 82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161 (391)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence 98887666664355678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHHHHHH
Q 022844 210 TFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVRL 285 (291)
Q Consensus 210 ~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~~~~~ 285 (291)
..||+++|+|++++ ..++++|+||++.|||++.+.++++|+|++++++|.||||+||++++||+. +|+..++..++
T Consensus 162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 241 (391)
T 2vig_A 162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLD 241 (391)
T ss_dssp TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHH
T ss_pred CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHH
Confidence 99999999999853 237999999999999999999999999999999999999999999999974 68988888888
Q ss_pred hhcc
Q 022844 286 LCSK 289 (291)
Q Consensus 286 ~~r~ 289 (291)
..|+
T Consensus 242 ~~r~ 245 (391)
T 2vig_A 242 MGRI 245 (391)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 14
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=4.1e-47 Score=348.73 Aligned_cols=234 Identities=33% Similarity=0.506 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 022844 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (291)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~ 132 (291)
.+++|++++++.+++|+.+++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++
T Consensus 2 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~ 81 (372)
T 2dvl_A 2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV 81 (372)
T ss_dssp -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence 37899999999999999999988888888889999999999999999999 99999999999999999999999999988
Q ss_pred hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCC
Q 022844 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212 (291)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a 212 (291)
+..+..|+.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+..|
T Consensus 82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A 161 (372)
T 2dvl_A 82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA 161 (372)
T ss_dssp HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence 77666664466678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 213 DVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 213 ~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
|+++|+|++++ ++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++..++..|+
T Consensus 162 d~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~ 237 (372)
T 2dvl_A 162 HLYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRV 237 (372)
T ss_dssp SEEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99999999864 799999999999999999999999999999999999999999999987 4689888888887775
No 15
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=3.6e-47 Score=351.89 Aligned_cols=239 Identities=27% Similarity=0.420 Sum_probs=221.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (291)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~ 128 (291)
.|++.++++++++++.+++|+++++.|...+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus 11 ~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 90 (396)
T 1egd_A 11 GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG 90 (396)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 477889999999999999999999999888888899999999999999999999 9999999999999999999999999
Q ss_pred CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccC
Q 022844 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~ 208 (291)
++++++.+ .|+.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||
T Consensus 91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 169 (396)
T 1egd_A 91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN 169 (396)
T ss_dssp CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence 99888765 56556666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHHH
Q 022844 209 STFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (291)
Q Consensus 209 ~~~a~~~lv~a~~~~~------~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~~ 281 (291)
+..||+++|+|+++++ .++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+. +|+..++
T Consensus 170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~ 249 (396)
T 1egd_A 170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM 249 (396)
T ss_dssp TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence 9999999999998642 46899999999999999999999999999999999999999999999874 6898888
Q ss_pred HHHHhhcc
Q 022844 282 KVRLLCSK 289 (291)
Q Consensus 282 ~~~~~~r~ 289 (291)
..++..|+
T Consensus 250 ~~l~~~r~ 257 (396)
T 1egd_A 250 GAFDKERP 257 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887774
No 16
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.2e-46 Score=347.95 Aligned_cols=238 Identities=27% Similarity=0.395 Sum_probs=219.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
|++.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus 15 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 1rx0_A 15 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGC 94 (393)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 45568999999999999999999999888888889999999999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
++++..+..|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 95 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a 173 (393)
T 1rx0_A 95 TSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGA 173 (393)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCC
Confidence 88877666664 56678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHh
Q 022844 210 TFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLL 286 (291)
Q Consensus 210 ~~a~~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~ 286 (291)
..||+++|+|++++ .+++++|+||++.|||++.+.+.++|++++++++|.||||+||++++||+ ++|+..++..++.
T Consensus 174 ~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~ 253 (393)
T 1rx0_A 174 GESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNG 253 (393)
T ss_dssp TTCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHH
T ss_pred ccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHH
Confidence 99999999999853 23689999999999999999999999999999999999999999999987 4689888888877
Q ss_pred hcc
Q 022844 287 CSK 289 (291)
Q Consensus 287 ~r~ 289 (291)
+|+
T Consensus 254 ~r~ 256 (393)
T 1rx0_A 254 GRI 256 (393)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 17
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=4.5e-47 Score=352.00 Aligned_cols=240 Identities=22% Similarity=0.305 Sum_probs=221.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (291)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~ 128 (291)
.+++.++++++++++.+++|+++++.|...+.++.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus 24 ~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 103 (403)
T 3r7k_A 24 APEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA 103 (403)
T ss_dssp -CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 345568999999999999999999999988889999999999999999999999 9999999999999999999999998
Q ss_pred -CCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844 129 -DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (291)
Q Consensus 129 -~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it 207 (291)
+++++..+..++.++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs 183 (403)
T 3r7k_A 104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT 183 (403)
T ss_dssp TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence 7777655554555677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCC--CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHH
Q 022844 208 NSTFADVLVIFARNTT--TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVR 284 (291)
Q Consensus 208 ~~~~a~~~lv~a~~~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~ 284 (291)
|+..||+++|.|++++ .+++++|+||+++|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++..+
T Consensus 184 ~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l 263 (403)
T 3r7k_A 184 SGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263 (403)
T ss_dssp TTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTH
T ss_pred CCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHH
Confidence 9999999999999864 24799999999999999999999999999999999999999999999997 46899888888
Q ss_pred Hhhcc
Q 022844 285 LLCSK 289 (291)
Q Consensus 285 ~~~r~ 289 (291)
+..|+
T Consensus 264 ~~~r~ 268 (403)
T 3r7k_A 264 QAERL 268 (403)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87775
No 18
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.2e-46 Score=347.07 Aligned_cols=237 Identities=26% Similarity=0.350 Sum_probs=217.8
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHcc
Q 022844 51 FD-DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARV 128 (291)
Q Consensus 51 ~~-~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~ 128 (291)
|+ +.++++++++++.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++
T Consensus 5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 84 (385)
T 2pg0_A 5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV 84 (385)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 44 668999999999999999999999888888999999999999999999999 9999999999999999999999999
Q ss_pred C-CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeeccc
Q 022844 129 D-ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (291)
Q Consensus 129 ~-~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it 207 (291)
+ +++++.+ |..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.|||
T Consensus 85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s 162 (385)
T 2pg0_A 85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT 162 (385)
T ss_dssp CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence 9 7776544 544556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHH
Q 022844 208 NSTFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTS 281 (291)
Q Consensus 208 ~~~~a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~ 281 (291)
|+..||+++|.|+++++ .++++|+||++.|||++.+.++++|++++++++|.||||+||++++||+ ++|+..++
T Consensus 163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~ 242 (385)
T 2pg0_A 163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM 242 (385)
T ss_dssp TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999998632 2689999999999999999999999999999999999999999999997 46899888
Q ss_pred HHHHhhcc
Q 022844 282 KVRLLCSK 289 (291)
Q Consensus 282 ~~~~~~r~ 289 (291)
..++..|+
T Consensus 243 ~~l~~~r~ 250 (385)
T 2pg0_A 243 EKLQQERL 250 (385)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887775
No 19
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=9e-47 Score=349.02 Aligned_cols=237 Identities=27% Similarity=0.406 Sum_probs=220.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCCh--HHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccC
Q 022844 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVD 129 (291)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~--~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~ 129 (291)
+.++++++++++.+++|+++++.|.+.+.|+.+.+|. ++|++|++.||+++ +|++|||.|+++.+.+.++|++++++
T Consensus 11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 90 (394)
T 1ivh_A 11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS 90 (394)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence 4589999999999999999999998888888999999 99999999999999 99999999999999999999999999
Q ss_pred CcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCC
Q 022844 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~ 209 (291)
+++++.+..|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|++++|||+|||+|.||||+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~ 170 (394)
T 1ivh_A 91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170 (394)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence 99887776665456678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHH
Q 022844 210 TFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKV 283 (291)
Q Consensus 210 ~~a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~ 283 (291)
..||+++|.|+++++ .++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+ ++|+..++..
T Consensus 171 ~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 250 (394)
T 1ivh_A 171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSG 250 (394)
T ss_dssp GGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHH
T ss_pred CcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHH
Confidence 999999999998633 3689999999999999999999999999999999999999999999987 4689888888
Q ss_pred HHhhcc
Q 022844 284 RLLCSK 289 (291)
Q Consensus 284 ~~~~r~ 289 (291)
++..|+
T Consensus 251 l~~~r~ 256 (394)
T 1ivh_A 251 LDLERL 256 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887774
No 20
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=8.2e-47 Score=364.51 Aligned_cols=252 Identities=27% Similarity=0.391 Sum_probs=224.3
Q ss_pred ccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHh-CCCChHHHH
Q 022844 15 NARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK-AEFPFHVIP 93 (291)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~-~~~p~~~~~ 93 (291)
.++++|+|+ +++.++++|. +++|++++++.+++|+++++.|...+.+.. ..+|+++|+
T Consensus 9 ~~~~~f~~~-~~~~~~~~~~--------------------~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~ 67 (577)
T 2z1q_A 9 QKGGGWLLE-VPERVYTPED--------------------FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMR 67 (577)
T ss_dssp TSTTGGGTS-CCSCCCCGGG--------------------CCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHH
T ss_pred cccCccccC-CHHHcCCCCC--------------------CCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHH
Confidence 568899998 7776654221 578999999999999999888875443322 378999999
Q ss_pred HHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEE
Q 022844 94 KLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACW 172 (291)
Q Consensus 94 ~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~ 172 (291)
+|++.||+++ +|++|||.|++..+.+.++|++ +.+++++..+.+|++++..+|..+|+++||++|||++++|++++|+
T Consensus 68 ~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~ 146 (577)
T 2z1q_A 68 KAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAY 146 (577)
T ss_dssp HHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEE
T ss_pred HHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEE
Confidence 9999999999 9999999999999999999999 7788888777777655566899999999999999999999999999
Q ss_pred EecCCCCCCCCCCCceEEEEe--CCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCc
Q 022844 173 ALTEPAYGSDASALNTTATKV--EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGL 250 (291)
Q Consensus 173 a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~ 250 (291)
|+|||++|||+..++|+|+++ +++|+|||+|+||||+..||+++|+|++++ +++++|+||++.|||++.+.++++|+
T Consensus 147 alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~ 225 (577)
T 2z1q_A 147 CLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGI 225 (577)
T ss_dssp ECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSC
T ss_pred EecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCC
Confidence 999999999999999999984 457999999999999999999999999864 67999999999999999999999999
Q ss_pred cccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 251 RIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 251 r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
+++++++|.|+||+||.+++||+ ++|++.++..++.+|.
T Consensus 226 ~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~ 265 (577)
T 2z1q_A 226 KASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRY 265 (577)
T ss_dssp TTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHH
T ss_pred CCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999987 5799999999998874
No 21
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=3e-46 Score=345.23 Aligned_cols=241 Identities=35% Similarity=0.558 Sum_probs=221.0
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHH
Q 022844 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEI 125 (291)
Q Consensus 47 d~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l 125 (291)
|.+.|++.+++|++++++.+++|+++.+.|...+.++.+.+|.++|++|++.||+++ + ++|||.|+++.+.+.++|++
T Consensus 6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel 84 (392)
T 1siq_A 6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLAREL 84 (392)
T ss_dssp STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHH
Confidence 455688889999999999999999999999888888888999999999999999999 9 99999999999999999999
Q ss_pred HccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEEeee
Q 022844 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQK 203 (291)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~LnG~K 203 (291)
++++++++..+.++..++...|..+|+++||++|||++++|+.++|+++|||++|||+..++|+|+++ +|||+|||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K 164 (392)
T 1siq_A 85 ERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTK 164 (392)
T ss_dssp HTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEE
T ss_pred HHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEE
Confidence 99998877655555444456788999999999999999999999999999999999999999999999 9999999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCCCcHHHHHHH
Q 022844 204 RWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283 (291)
Q Consensus 204 ~~it~~~~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~~g~~~~~~~ 283 (291)
.||||+..||+++|.|++++ +++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||+.+|+..++..
T Consensus 165 ~~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~ 243 (392)
T 1siq_A 165 TWITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC 243 (392)
T ss_dssp EEEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHH
T ss_pred EeecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHH
Confidence 99999999999999999864 35899999999999999999999999999999999999999999999887788888888
Q ss_pred HHhhcc
Q 022844 284 RLLCSK 289 (291)
Q Consensus 284 ~~~~r~ 289 (291)
++..|+
T Consensus 244 l~~~r~ 249 (392)
T 1siq_A 244 LNNARY 249 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 22
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=3.2e-46 Score=345.54 Aligned_cols=237 Identities=28% Similarity=0.442 Sum_probs=220.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCC-hHHHHHHHhCcccCC-cccCCCCCCc--cHHHHHHHHHHHH
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGG-TIKGYGCPGH--SVTGAAIAIAEIA 126 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p-~~~~~~l~~~Gl~~~-~p~~~GG~g~--~~~~~~~v~e~l~ 126 (291)
|++.++++++++++.+++|+++.+.|.+.+.|+.+.+| .++|++|++.||+++ +|++|||.|+ +..+.+.++|+++
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999 999999999999999 9999999999 9999999999999
Q ss_pred ccCCcchhHHHHhhHHHHH-HHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeec
Q 022844 127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (291)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~ 205 (291)
++++++++.+..|. ++.. .|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 159 (397)
T 3mpi_A 81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159 (397)
T ss_dssp HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence 99999888776663 4445 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCC---CCCeEEEEE-eCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHH
Q 022844 206 IGNSTFADVLVIFARNTT---TNQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (291)
Q Consensus 206 it~~~~a~~~lv~a~~~~---~~~~~~flV-~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~ 280 (291)
|||+..||+++|.|++++ ..++++|+| |++.|||++ +.++++|++++++++|.|+||+||++++||.. +|+..+
T Consensus 160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~ 238 (397)
T 3mpi_A 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238 (397)
T ss_dssp EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence 999999999999999853 246999999 999999999 89999999999999999999999999999974 689988
Q ss_pred HHHHHhhcc
Q 022844 281 SKVRLLCSK 289 (291)
Q Consensus 281 ~~~~~~~r~ 289 (291)
+..++..|+
T Consensus 239 ~~~~~~~r~ 247 (397)
T 3mpi_A 239 FGSLNHTRL 247 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887775
No 23
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=4.9e-46 Score=346.27 Aligned_cols=239 Identities=20% Similarity=0.203 Sum_probs=209.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhC------------------CCChHHHHHHHhCcccCC-cccCCCCC
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGG-TIKGYGCP 111 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~------------------~~p~~~~~~l~~~Gl~~~-~p~~~GG~ 111 (291)
|++.++++++++++.+++|+++++.|...+.++.. .+|.++|++|++.||+++ +|++|||.
T Consensus 5 M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG~ 84 (415)
T 4hr3_A 5 MDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELGG 84 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCCC
Confidence 78889999999999999999999888877665443 266899999999999999 99999999
Q ss_pred CccHHHHHHHHHHHHccCCcchhHHH-HhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCC-CCCCCCCCceE
Q 022844 112 GHSVTGAAIAIAEIARVDASCSTFIL-VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTT 189 (291)
Q Consensus 112 g~~~~~~~~v~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~ 189 (291)
|+++.+++.++|++++++.+...+.. .+...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+..++|+
T Consensus 85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~ 164 (415)
T 4hr3_A 85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT 164 (415)
T ss_dssp CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence 99999999999999998754332211 12223346889999999999999999999999999999999 99999999999
Q ss_pred EEEeCCEEEEEeeeecccCCCC--CCEEEEEEEeCCC----CCeEEEEEeCCCCCeEEeccCCccCccccc--eeeEEEe
Q 022844 190 ATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ--NGDILLK 261 (291)
Q Consensus 190 a~~~~~g~~LnG~K~~it~~~~--a~~~lv~a~~~~~----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~--~~~v~f~ 261 (291)
|++++|||+|||+|.||||+.. ||+++|+|+++++ +++++|+||++.|||++.+.++++|+++++ +++|.|+
T Consensus 165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fd 244 (415)
T 4hr3_A 165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD 244 (415)
T ss_dssp EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEE
T ss_pred EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEc
Confidence 9999999999999999999966 9999999998632 579999999999999999999999999987 9999999
Q ss_pred eeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 262 KVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 262 ~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
||+||++++||+ ++|+...+..++..|+
T Consensus 245 dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~ 273 (415)
T 4hr3_A 245 NVRLPADAFIAGPGKGFEIAQGRLGPGRV 273 (415)
T ss_dssp EEEEEGGGBSSCTTCHHHHHHHHCSHHHH
T ss_pred cEEECHHHcCCCCCchHHHHHHHHhHHHH
Confidence 999999999998 4689888888777664
No 24
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=9.7e-46 Score=358.27 Aligned_cols=256 Identities=25% Similarity=0.333 Sum_probs=226.1
Q ss_pred hhccccccccCCcccccccCCCCCCCCCCCCCCCCcccCCCCCCHHHH----HHHHHHHHHHHhhccchHHHHHHhCCCC
Q 022844 13 DKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ----AVRMKVRECMEKEIAPIMAEYWEKAEFP 88 (291)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~----~l~~~~~~~~~~~~~p~~~~~d~~~~~p 88 (291)
...++++|.|+++++.++++|.. ++++++ ++++.+++|+.+.+.|. +.|+...+|
T Consensus 23 ~~~~~~lf~g~~~~~~~~~~p~~-------------------l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p 81 (607)
T 2uxw_A 23 MSFAVGMFKGQLTTDQVFPYPSV-------------------LNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVE 81 (607)
T ss_dssp CCHHHHHTTTCCCCTTTSSCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCC
T ss_pred ccHHHHhcCCCCCHHHhCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCC
Confidence 34567888888888888765421 345554 48899999999987653 346778999
Q ss_pred hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 022844 89 FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (291)
Q Consensus 89 ~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~ 167 (291)
+++|+++++.||+++ +|++|||.|++..+.+.+.|+++++++++++++..|.+++..+|..+|+++||++|||++++|+
T Consensus 82 ~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~ 161 (607)
T 2uxw_A 82 ETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 161 (607)
T ss_dssp HHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 999999999999999 9999999999999999999999999998888777665555678899999999999999999999
Q ss_pred ceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEEeeeecccCCCCCCEEEEEEEeCC--------CCCeEEEEEeCCCC
Q 022844 168 TIACWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNSTFADVLVIFARNTT--------TNQINGYLVKKDAP 237 (291)
Q Consensus 168 ~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG~K~~it~~~~a~~~lv~a~~~~--------~~~~~~flV~~~~~ 237 (291)
+++|+++|||++|||+..++|+|++++ ++|+|||+|+||||+..||+++|+|++++ .+++++|+||++.|
T Consensus 162 ~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~ 241 (607)
T 2uxw_A 162 TVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFG 241 (607)
T ss_dssp SCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGS
T ss_pred eEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCC
Confidence 999999999999999999999999974 47999999999999999999999999842 24689999999999
Q ss_pred CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 238 GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 238 Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
||++.+.++++|++++++++|.|+||+||.+++||+ ++|++.++.+++.+|+
T Consensus 242 Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl 294 (607)
T 2uxw_A 242 GITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRF 294 (607)
T ss_dssp SEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred CeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 4699999999998885
No 25
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=1.4e-45 Score=356.29 Aligned_cols=233 Identities=27% Similarity=0.455 Sum_probs=211.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccchHHHHHHhC-CCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcc
Q 022844 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASC 132 (291)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~-~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~ 132 (291)
++++++++++.+++|+++++.|...+.++.+ .+|.++|+++++.||+++ +|++|||.|+++.+.+.++|++++++ +.
T Consensus 33 lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~-~~ 111 (597)
T 3owa_A 33 FSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GF 111 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGT-HH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccc-hH
Confidence 7899999999999999999999887777655 678999999999999999 99999999999999999999999986 33
Q ss_pred hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeC--CEEEEEeeeecccCCC
Q 022844 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILEGQKRWIGNST 210 (291)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~~LnG~K~~it~~~ 210 (291)
+..+..|..++...|..+|+++||++|||++++|++++|+|+|||++|||+..++|+|++++ ++|+|||+|.||||+.
T Consensus 112 ~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~ 191 (597)
T 3owa_A 112 AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSA 191 (597)
T ss_dssp HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCc
Confidence 44444555555567889999999999999999999999999999999999999999999864 4599999999999999
Q ss_pred CCCEEEEEEEeCCCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 211 ~a~~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
.||+++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||+ ++|+..++..++.+|.
T Consensus 192 ~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R~ 270 (597)
T 3owa_A 192 FADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRY 270 (597)
T ss_dssp TCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHhHHH
Confidence 9999999999864 5799999999999999999999999999999999999999999999997 4699999999998875
No 26
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3e-45 Score=335.64 Aligned_cols=223 Identities=22% Similarity=0.271 Sum_probs=204.0
Q ss_pred HHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHH
Q 022844 64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 142 (291)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~ 142 (291)
+.+++|+++++.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++++.+.+|..+
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 4578899999999888888899999999999999999999 999999999999999999999999999988766666445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeC
Q 022844 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (291)
Q Consensus 143 ~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~ 222 (291)
+...|. +|+++||++|||++++|+ +.|+++|||++|||+..++|+|++++|||+|||+|.||||+..||+++|+|+++
T Consensus 82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~ 159 (366)
T 1r2j_A 82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE 159 (366)
T ss_dssp HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence 667788 999999999999999999 999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCCC-CcHHHH-HHHHHhhcc
Q 022844 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT-SKVRLLCSK 289 (291)
Q Consensus 223 ~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~~-~g~~~~-~~~~~~~r~ 289 (291)
+ +++++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++||+. +|+..+ +..++..|+
T Consensus 160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~ 227 (366)
T 1r2j_A 160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRK 227 (366)
T ss_dssp S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHH
T ss_pred C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHH
Confidence 4 37899999999999999999999999999999999999999999999874 688877 777777664
No 27
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=2.4e-43 Score=330.41 Aligned_cols=238 Identities=20% Similarity=0.259 Sum_probs=212.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHh----CCCC--hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHH
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIA 123 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~----~~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e 123 (291)
|++.++++++++++.+++|+++++.|...+.++. +.+| .++|++|++.||+++ +|++|||.|+++.+.+.++|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 6677999999999999999999999987665542 3455 899999999999999 99999999999999999999
Q ss_pred HHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHh--cCCceeEEEecCCCCCC-----CCCCCceEEEEeCCE
Q 022844 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG 196 (291)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~--~G~~~~~~a~tEp~~Gs-----d~~~~~t~a~~~~~g 196 (291)
++++.+++++..+..|. ++...|..+|+++||++|||+++ +|+.++|+++|||++|| |+..++|+|++++||
T Consensus 82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g 160 (439)
T 2c12_A 82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160 (439)
T ss_dssp HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence 99999999887666653 55567899999999999999999 69999999999999997 588889999999999
Q ss_pred EEEEeeeecccCCC-----CCCEEEEEEEe-C----C-------CCCeEEEEEeCCCC------CeEEeccCCccCcccc
Q 022844 197 WILEGQKRWIGNST-----FADVLVIFARN-T----T-------TNQINGYLVKKDAP------GLTVTKIENKIGLRIV 253 (291)
Q Consensus 197 ~~LnG~K~~it~~~-----~a~~~lv~a~~-~----~-------~~~~~~flV~~~~~------Gv~~~~~~~~~G~r~~ 253 (291)
|+|||+|.||||+. .||+++|+|++ + + ..++++|+||++.| ||++.+.++++|+|++
T Consensus 161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~ 240 (439)
T 2c12_A 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT 240 (439)
T ss_dssp EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence 99999999999997 89999999998 5 2 13689999999988 8889999999999999
Q ss_pred ceeeEEEeeeEeCCCCCcCCC-CcHH-HHHHHHHhhcc
Q 022844 254 QNGDILLKKVFVPDEDRLPGV-NSFQ-DTSKVRLLCSK 289 (291)
Q Consensus 254 ~~~~v~f~~v~Vp~~~vlg~~-~g~~-~~~~~~~~~r~ 289 (291)
++++|.|+||+||++++||+. +|+. .++..++..|+
T Consensus 241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~ 278 (439)
T 2c12_A 241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAA 278 (439)
T ss_dssp CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999874 5888 88888887764
No 28
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=7.3e-44 Score=333.78 Aligned_cols=238 Identities=19% Similarity=0.255 Sum_probs=210.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHH----hC-CCC--hHHHHHHHhCcccCC-cccCCCCCCccHHHHHHH
Q 022844 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIA 121 (291)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~----~~-~~p--~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v 121 (291)
-|++.+++|++++++.+++|+++++.|...++++ .+ .+| .++|++|++.||+++ +|++|||.|+++.+++.+
T Consensus 2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 3788899999999999999999999988766543 22 454 899999999999999 999999999999999999
Q ss_pred HHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcC--CceeEEEecCCCCCC-----CCCCCceEEEEeC
Q 022844 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKVE 194 (291)
Q Consensus 122 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G--~~~~~~a~tEp~~Gs-----d~~~~~t~a~~~~ 194 (291)
+|++++.++++++.+..+ .++...|..+|+++ |++|||++++| +.++|+++|||++|| |+..++|+|++++
T Consensus 82 ~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g 159 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG 159 (438)
T ss_dssp HHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred HHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence 999999998887655444 35556788899999 99999999997 589999999999998 6889999999999
Q ss_pred CEEEEEeeeecccCCC-----CCCEEEEEEEeCC---------CCCeEEEEEeCCC-----CC-eEEeccCCccCccccc
Q 022844 195 GGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYLVKKDA-----PG-LTVTKIENKIGLRIVQ 254 (291)
Q Consensus 195 ~g~~LnG~K~~it~~~-----~a~~~lv~a~~~~---------~~~~~~flV~~~~-----~G-v~~~~~~~~~G~r~~~ 254 (291)
|||+|||+|.||||+. .||+++|+|++++ .+++++|+||++. || |++.+.++++|+|+++
T Consensus 160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~ 239 (438)
T 3mkh_A 160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS 239 (438)
T ss_dssp TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence 9999999999999997 7999999999842 1469999999875 88 9999999999999999
Q ss_pred eeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 255 NGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 255 ~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
+++|.|+||+||++++||+ ++|+..++..++..|+
T Consensus 240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~ 275 (438)
T 3mkh_A 240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAV 275 (438)
T ss_dssp CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHH
T ss_pred ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999987 4689988888888775
No 29
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-43 Score=326.87 Aligned_cols=239 Identities=21% Similarity=0.241 Sum_probs=200.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhhccchHH---HHHHh-----CC-----CChHHHHHHHhCcccCC-cccCCCCCCc
Q 022844 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGG-TIKGYGCPGH 113 (291)
Q Consensus 48 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~---~~d~~-----~~-----~p~~~~~~l~~~Gl~~~-~p~~~GG~g~ 113 (291)
...|++.++++++++++.+++|+++++.|... +.++. .. ++.++|+++++.||+++ +|+ |.|+
T Consensus 16 ~~~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~ 92 (428)
T 2wbi_A 16 TTGQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGL 92 (428)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCC
Confidence 33478889999999999999999999877665 44432 22 34789999999999999 888 7789
Q ss_pred cHHHHHHHHHHHHccCCcc-hhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCC-CCCCCCCCceEEE
Q 022844 114 SVTGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTAT 191 (291)
Q Consensus 114 ~~~~~~~v~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~-~Gsd~~~~~t~a~ 191 (291)
++.+.+.++|++++++.+. ++....++.++...|..+|+++||++|||++++|+.++|+++|||+ +|||+..+.|+|+
T Consensus 93 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~ 172 (428)
T 2wbi_A 93 SHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQ 172 (428)
T ss_dssp CHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEE
T ss_pred CHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEE
Confidence 9999999999999987532 2211122234566888999999999999999999999999999999 9999999999999
Q ss_pred EeCCEEEEEeeeecccCCCC--CCEEEEEEEeCCC-----CCeEEEEEeCCCCCeEEeccCCccCccccc---eeeEEEe
Q 022844 192 KVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ---NGDILLK 261 (291)
Q Consensus 192 ~~~~g~~LnG~K~~it~~~~--a~~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~---~~~v~f~ 261 (291)
+++|||+|||+|.||||+.. ||+++|+|+++++ +++++|+||++.|||++.+.++++|+++++ +++|.|+
T Consensus 173 ~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd 252 (428)
T 2wbi_A 173 RDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFN 252 (428)
T ss_dssp EETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEE
T ss_pred EeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeC
Confidence 99999999999999999987 9999999998643 368999999999999999999999999984 9999999
Q ss_pred eeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 262 KVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 262 ~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
||+||++++||+ ++|+...+..++..|+
T Consensus 253 dv~VP~~~~lg~~g~g~~~~~~~l~~~r~ 281 (428)
T 2wbi_A 253 QVRVPATNLILGEGRGFEISQGRLGPGRI 281 (428)
T ss_dssp EEEEEGGGBCSCTTCHHHHHHHHHHHHHH
T ss_pred ceEECHHHhcCCccchHHHHHHHHHhHHH
Confidence 999999999987 4689888888887775
No 30
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=3e-41 Score=316.17 Aligned_cols=226 Identities=20% Similarity=0.290 Sum_probs=196.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHc
Q 022844 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIAR 127 (291)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~~~~~~~~v~e~l~~ 127 (291)
.|++.++++++++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|++++
T Consensus 15 ~m~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~ 93 (439)
T 3m9v_A 15 GLYAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVAR 93 (439)
T ss_dssp TTSSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHh
Confidence 3888899999999999999997 4788888889999999999999999999999 999999999 899999999999999
Q ss_pred cCCcchhHHHHhhHHHHHH--HHhcCCHHH---HHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEee
Q 022844 128 VDASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 202 (291)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~--l~~~Gt~~q---k~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~ 202 (291)
++++++..+.+|......+ +..+|+++| |++||+++++|+.++|+++|||++ |...+.| +++|||+|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vlnG~ 168 (439)
T 3m9v_A 94 ADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLLSGR 168 (439)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEEEEE
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEEEeE
Confidence 9998887666664433333 446799999 999999999999999999999975 4333332 26788999999
Q ss_pred eecccCCCCCCEEEEEEEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcC--C-CCc
Q 022844 203 KRWIGNSTFADVLVIFARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNS 276 (291)
Q Consensus 203 K~~it~~~~a~~~lv~a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg--~-~~g 276 (291)
|+||||+..||+++|.|++++ ..++++|+||++.|||++.+.++++|++++++++|.|+||+||++++|| + +.|
T Consensus 169 K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g 248 (439)
T 3m9v_A 169 KTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGAR 248 (439)
T ss_dssp EEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CC
T ss_pred EEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCch
Confidence 999999999999999999863 2469999999999999999999999999999999999999999999998 4 345
Q ss_pred HHHHH
Q 022844 277 FQDTS 281 (291)
Q Consensus 277 ~~~~~ 281 (291)
+...+
T Consensus 249 ~~~~~ 253 (439)
T 3m9v_A 249 NDAVL 253 (439)
T ss_dssp CGGGH
T ss_pred HHHHh
Confidence 54333
No 31
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=1.1e-41 Score=314.87 Aligned_cols=232 Identities=20% Similarity=0.274 Sum_probs=199.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCC-ccHHHHHHHHHHHHcc
Q 022844 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPG-HSVTGAAIAIAEIARV 128 (291)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g-~~~~~~~~v~e~l~~~ 128 (291)
|...++++++++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.| .++.+++.++|+++++
T Consensus 5 ~~~~lt~e~~~~~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~ 83 (395)
T 3mxl_A 5 LRAPLTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83 (395)
T ss_dssp SSSCCSHHHHHHHHHHTTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHHHHH-HhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence 5567899999999999999974 788888899999999999999999999999 999999999 8999999999999999
Q ss_pred CCcchhHHHHhhHHHHHHH--HhcCCHHHH---HHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeee
Q 022844 129 DASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQK 203 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l--~~~Gt~~qk---~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K 203 (291)
++++++.+.+|...+..++ ..+|+++|| ++|||++++|+.++|+++|||++|+ ..++| +++|||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~K 158 (395)
T 3mxl_A 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGRK 158 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeEE
Confidence 9998877666654444333 367999999 9999999999999999999998653 22222 267889999999
Q ss_pred ecccCCCCCCEEEEEEEeCCC---CCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcC--C-CCcH
Q 022844 204 RWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--G-VNSF 277 (291)
Q Consensus 204 ~~it~~~~a~~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg--~-~~g~ 277 (291)
.||||+..||+++|.|+++++ .++++|+||++.|||++.+.|+++|+|++++++|.|+||+||++++|| . +.|+
T Consensus 159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~ 238 (395)
T 3mxl_A 159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARR 238 (395)
T ss_dssp EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCC
T ss_pred EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccH
Confidence 999999999999999998642 358999999999999999999999999999999999999999999998 3 4466
Q ss_pred HHHHHHHHhhc
Q 022844 278 QDTSKVRLLCS 288 (291)
Q Consensus 278 ~~~~~~~~~~r 288 (291)
...+..++..|
T Consensus 239 ~~~~~~~~~~r 249 (395)
T 3mxl_A 239 DAVLAGQTVSS 249 (395)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHhhhHHHH
Confidence 54443333333
No 32
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=2e-38 Score=294.83 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=179.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCC
Q 022844 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDA 130 (291)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~ 130 (291)
++.++++++++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++
T Consensus 15 ~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~ 93 (414)
T 2or0_A 15 ENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDG 93 (414)
T ss_dssp --------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCH
T ss_pred cCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhCh
Confidence 445788999999999999986 888888888899999999999999999999 999999999999999999999999999
Q ss_pred cchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCC
Q 022844 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~ 210 (291)
++++.+..+. ++...|..+|+++||++|+| +|+.++|+++| | .|+|++++|||+|||+|.||||+.
T Consensus 94 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~ 159 (414)
T 2or0_A 94 ASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGTD 159 (414)
T ss_dssp HHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTGG
T ss_pred HHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCCc
Confidence 8887665553 56678889999999999998 79989999987 4 589999999999999999999999
Q ss_pred CCCEEEEEEEeCC---CC---CeEEEEEeCCCCCeEEe-ccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844 211 FADVLVIFARNTT---TN---QINGYLVKKDAPGLTVT-KIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 211 ~a~~~lv~a~~~~---~~---~~~~flV~~~~~Gv~~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
.||+++|+|++++ .. ++++|+||++ ||++. +.|+++|++++++++|.||||+||++++||.
T Consensus 160 ~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~ 227 (414)
T 2or0_A 160 HCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNA 227 (414)
T ss_dssp GCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred hhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeecc
Confidence 9999999999852 22 7899999987 89999 8999999999999999999999999999974
No 33
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=1.4e-36 Score=280.50 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHh
Q 022844 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVH 139 (291)
Q Consensus 61 ~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~ 139 (291)
++++.+++|+.+ +.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++|+++++.+..+
T Consensus 11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 89 (394)
T 2rfq_A 11 EVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII 89 (394)
T ss_dssp HHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 588999999975 888888888899999999999999999999 999999999999999999999999999888765555
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEE
Q 022844 140 SSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (291)
Q Consensus 140 ~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a 219 (291)
.++...|..+|+++||++|+| +|+.+.|+++| | .|+|++++|||+|||+|.||||+..||+++|+|
T Consensus 90 -~~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a 155 (394)
T 2rfq_A 90 -GVHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGG 155 (394)
T ss_dssp -HHHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEEE
T ss_pred -HHHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEee
Confidence 356678889999999999998 79989999987 4 589999999999999999999999999999999
Q ss_pred EeCCCC---CeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844 220 RNTTTN---QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 220 ~~~~~~---~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
++++++ ++++|+||++ ||++.+.|+++|++++++++|.||||+||++++||.
T Consensus 156 ~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~ 210 (394)
T 2rfq_A 156 PVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSF 210 (394)
T ss_dssp EEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred eecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhccc
Confidence 983222 6899999987 899999999999999999999999999999999974
No 34
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=1.4e-36 Score=283.01 Aligned_cols=197 Identities=17% Similarity=0.167 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCC-cccCCCCCCccHHHHHHHHHHHHccCCcchhHHHH
Q 022844 60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGG-TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138 (291)
Q Consensus 60 ~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~-~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~ 138 (291)
+++++.+++|+. .+.|.+.+.|+.+.+|.++|++|++.||+++ +|++|||.|+++.+.+.++|+++++++++++.+..
T Consensus 38 ~~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 116 (422)
T 2jbr_A 38 VSMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSL 116 (422)
T ss_dssp CCHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 358899999987 5788888888899999999999999999999 99999999999999999999999999988876555
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEE
Q 022844 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIF 218 (291)
Q Consensus 139 ~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~ 218 (291)
+ .++..+|..+|+++||++|+|+ |+.+.|+++| | .|+|++++|||+|||+|.||||+..||+++|.
T Consensus 117 ~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ 182 (422)
T 2jbr_A 117 L-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVG 182 (422)
T ss_dssp H-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred H-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEE
Confidence 4 4566788999999999999986 8889999987 4 57899999999999999999999999999999
Q ss_pred EEeCC---CCCeEEEEEeCCCCCeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC
Q 022844 219 ARNTT---TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 219 a~~~~---~~~~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
|++++ ..++++|+||++ ||++.+.|+++|++++++++|.|+||+||++++||.
T Consensus 183 a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~ 238 (422)
T 2jbr_A 183 FNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKA 238 (422)
T ss_dssp EEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred EEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecc
Confidence 99853 236899999987 899999999999999999999999999999999975
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=9.8e-34 Score=276.74 Aligned_cols=208 Identities=23% Similarity=0.285 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHhCCCChHHHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHccCCcchhHH
Q 022844 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (291)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~~~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~ 136 (291)
+|+.++++.+++|+++..... ...+....++++.|+.+++.|+++.+|+++|+ +..+...+.|+++ .+++ +
T Consensus 29 ~e~~~lr~~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G~---~~~~~~~v~e~~~---~~~~--~ 99 (659)
T 1w07_A 29 RHAFEVSDRIARLVASDPVFE-KSNRARLSRKELFKSTLRKCAHAFKRIIELRL---NEEEAGRLRHFID---QPAY--V 99 (659)
T ss_dssp HHHHHHHHHHHHHHHTCGGGC-CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHC---CCCH--H
T ss_pred hHHHHHHHHHHHHHhcCcccc-cCCccCCChHHHHHHHHHHHHHHHHhHHHhCC---CchHHHHHHHHhc---cchh--h
Confidence 789999999999998763221 11112235678899999998888778888873 4566666666664 3333 4
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----eeeecccC-
Q 022844 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN- 208 (291)
Q Consensus 137 ~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln-----G~K~~it~- 208 (291)
.+|..++...|..+|+++||++|||++++|++++|+|+|||++|||+..++|+|+++ +|||+|| |+|+||+|
T Consensus 100 ~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~ 179 (659)
T 1w07_A 100 DLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGL 179 (659)
T ss_dssp HHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTT
T ss_pred hhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCC
Confidence 456545667888999999999999999999999999999999999999999999998 6889999 99999999
Q ss_pred CCCCCEEEEEEEeCCC---CCeEEEEEeC-C------CCCeEEeccCCccC---ccccceeeEEEeeeEeCCCCCcCC
Q 022844 209 STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPG 273 (291)
Q Consensus 209 ~~~a~~~lv~a~~~~~---~~~~~flV~~-~------~~Gv~~~~~~~~~G---~r~~~~~~v~f~~v~Vp~~~vlg~ 273 (291)
+..||+++|+|+++.+ .|+++|+||. + .|||++.+.++++| +++++++.|.|+||+||.+++||+
T Consensus 180 a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~ 257 (659)
T 1w07_A 180 GKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMR 257 (659)
T ss_dssp TTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCS
T ss_pred CCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhcCC
Confidence 8999999999998532 3689999995 5 69999999999999 999999999999999999999984
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=99.97 E-value=5e-31 Score=251.87 Aligned_cols=189 Identities=16% Similarity=0.148 Sum_probs=158.8
Q ss_pred hHHHHHHHhCcccCC-c--ccCCCCCCccHHHHHHHHHHHHccCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhc
Q 022844 89 FHVIPKLGALRVAGG-T--IKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165 (291)
Q Consensus 89 ~~~~~~l~~~Gl~~~-~--p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~ 165 (291)
+++++.+.+.||+++ . |+++||.+......... +..+........++. .+...|..+| ++||++|+|++++
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~----~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~s 162 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLH----AQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLS 162 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHH----HHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHH----HHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhC
Confidence 678889999999999 7 68999654443333322 222332222222333 4556788899 9999999999999
Q ss_pred CCc-------------eeEEEecCCCCCCCCCCCceEEEEe-CCEEEEEeeeecccCCCCCCEEEEEEEeCCCCCeEEEE
Q 022844 166 LNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYL 231 (291)
Q Consensus 166 G~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~-~~g~~LnG~K~~it~~~~a~~~lv~a~~~~~~~~~~fl 231 (291)
|++ +.|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..||+++|+|+++ +|+++|+
T Consensus 163 ge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~fl 239 (541)
T 3djl_A 163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCFF 239 (541)
T ss_dssp SCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEEE
T ss_pred CCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEEE
Confidence 998 7899999999999999999999999 78899999999999 89999999999986 5899999
Q ss_pred EeCCCC-----CeEEeccCCccCccccceeeEEEeeeEeCCCCCcCC-CCcHHHHHHHHHhhcc
Q 022844 232 VKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-VNSFQDTSKVRLLCSK 289 (291)
Q Consensus 232 V~~~~~-----Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~vlg~-~~g~~~~~~~~~~~r~ 289 (291)
||++.| ||++.+.|+++|+|++++++|.|+||+ +++||+ +.|+..++.+++.+|+
T Consensus 240 Vp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl 300 (541)
T 3djl_A 240 VPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRF 300 (541)
T ss_dssp EESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHH
T ss_pred EecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHH
Confidence 999988 999999999999999999999999995 789987 4699999999998885
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=99.96 E-value=2.5e-29 Score=245.46 Aligned_cols=204 Identities=19% Similarity=0.284 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHHHhhccchHHHHHHhCCCCh-H-------HHHHHHhCcccCCcccCCCCCCccHHHHHHHHHHHHc
Q 022844 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF-H-------VIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIAR 127 (291)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~p~-~-------~~~~l~~~Gl~~~~p~~~GG~g~~~~~~~~v~e~l~~ 127 (291)
+++..++++.+++|+.+. |..... .....+. + ..+.|.+. + +++||.+ .... .+++++..
T Consensus 26 ~~~~~~~r~~~~~~l~~~--p~~~~~-~~~~~~~~e~~~~~~~~~~~l~~~-~-----~~~~~~~--~~~~-~~~~~~~~ 93 (661)
T 2ddh_A 26 SPENTRRRREIENLILND--PDFQHE-DYNFLTRSQRYEVAVKKSATMVKK-M-----REYGISD--PEEI-MWFKNSVH 93 (661)
T ss_dssp SHHHHHHHHHHHHHHHTC--GGGCCS-CGGGSCHHHHHHHHHHHHHHHHHH-H-----HHTTCCC--HHHH-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcC--cccccC-CcCCCCHHHHHHHHHHHHHHHHHH-H-----HHcCCCC--chHH-HHHHHHhc
Confidence 467788899999998765 321100 0001111 1 12222232 1 5677765 2222 33666665
Q ss_pred cCCcchhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHhcCCceeEEEecCCCCCCCCCCCceEEEEe--CCEEEEE-----
Q 022844 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE----- 200 (291)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~Ln----- 200 (291)
...+.+ +.+|..++...|..+||++||++|||++++|+.++|+|+|||++|||+..++|+|+++ +|||+||
T Consensus 94 ~~~~~~--~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~ 171 (661)
T 2ddh_A 94 RGHPEP--LDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVT 171 (661)
T ss_dssp TTCCCT--THHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSST
T ss_pred cchhhH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCC
Confidence 443333 3456556677899999999999999999999999999999999999999999999998 7899999
Q ss_pred eeeecccC-CCCCCEEEEEEEeCC---CCCeEEEEEeC-C------CCCeEEeccCCccCccccceeeEEEeeeEeCCCC
Q 022844 201 GQKRWIGN-STFADVLVIFARNTT---TNQINGYLVKK-D------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269 (291)
Q Consensus 201 G~K~~it~-~~~a~~~lv~a~~~~---~~~~~~flV~~-~------~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~ 269 (291)
|+|+||+| +..||+++|+|+++. ..|+++|+||. + .|||++.+.++++|++++.+++|.|+||+||.++
T Consensus 172 G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~ 251 (661)
T 2ddh_A 172 SIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPREN 251 (661)
T ss_dssp TSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGG
T ss_pred eEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHH
Confidence 99999999 889999999999852 23689999994 4 7999999999999999999999999999999999
Q ss_pred CcCC
Q 022844 270 RLPG 273 (291)
Q Consensus 270 vlg~ 273 (291)
+||+
T Consensus 252 lLg~ 255 (661)
T 2ddh_A 252 MLMK 255 (661)
T ss_dssp BCCS
T ss_pred hcCc
Confidence 9986
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=99.94 E-value=2.4e-26 Score=217.08 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=117.2
Q ss_pred HHHHhcCC--HHHHHHHHHHHhcCCceeEEEecCCCCC--------CCC-CCCceEEEEeCCEEEEEeeeecccCCCCCC
Q 022844 145 LTIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (291)
Q Consensus 145 ~~l~~~Gt--~~qk~~~l~~l~~G~~~~~~a~tEp~~G--------sd~-~~~~t~a~~~~~g~~LnG~K~~it~~~~a~ 213 (291)
.++..+|+ ++||++|||++++|+++.|+|+|||++| ||+ ..++ ++++++|||+|||+|+||||+..||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 35668999 9999999999999999999999999874 775 3444 8889999999999999999999999
Q ss_pred EEEEEEEeCC----CCCeEEEEEeCCCCCeEEec---cCCc----------cCc-cc-cceeeEEEeeeEeCCCCCc--C
Q 022844 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTK---IENK----------IGL-RI-VQNGDILLKKVFVPDEDRL--P 272 (291)
Q Consensus 214 ~~lv~a~~~~----~~~~~~flV~~~~~Gv~~~~---~~~~----------~G~-r~-~~~~~v~f~~v~Vp~~~vl--g 272 (291)
+++|+++++. .+++++|+||+++|||++.+ .+.+ +|+ |. .++++|.||||+||.+++| |
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 9999998741 23489999999999999953 3433 666 63 5789999999999999998 5
Q ss_pred CC-CcHHHHHHHHHhhc
Q 022844 273 GV-NSFQDTSKVRLLCS 288 (291)
Q Consensus 273 ~~-~g~~~~~~~~~~~r 288 (291)
+. .|+..++..+++.|
T Consensus 277 ~~~~g~~~~~~~~~~~r 293 (490)
T 1u8v_A 277 EYDFAGMMVERFAGYHR 293 (490)
T ss_dssp CGGGHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 53 46766665555544
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=99.92 E-value=5.7e-25 Score=207.35 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHhcCCceeEEEecCCCCC--------CCCCCCceEEE-EeCCEEEEEeeeecccCCCCCCEEEEEEEeC
Q 022844 152 SEEQKQKYLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (291)
Q Consensus 152 t~~qk~~~l~~l~~G~~~~~~a~tEp~~G--------sd~~~~~t~a~-~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~ 222 (291)
.++||++|||++++|+++.|+|+|||++| ||+. +.++++ +++|||+|||+|+|||| ..||+++|+|+++
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~ 199 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL 199 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence 47999999999999999999999999976 6765 566664 78999999999999999 9999999999985
Q ss_pred C----CCCeEEEEEeCCCCCeEEec--cCC--------ccCccc-cceeeEEEeeeEeCCCCCc
Q 022844 223 T----TNQINGYLVKKDAPGLTVTK--IEN--------KIGLRI-VQNGDILLKKVFVPDEDRL 271 (291)
Q Consensus 223 ~----~~~~~~flV~~~~~Gv~~~~--~~~--------~~G~r~-~~~~~v~f~~v~Vp~~~vl 271 (291)
. .+++++|+||+++|||++.. .+. ++|.|. .++++|.||||+||.+++|
T Consensus 200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl 263 (481)
T 2yyk_A 200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVF 263 (481)
T ss_dssp CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEE
T ss_pred CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHcc
Confidence 1 13489999999999999953 332 256664 6889999999999999998
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.89 E-value=1.9e-23 Score=197.40 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=107.1
Q ss_pred cCC--HHHHHHHHHHHhcCCceeEEEecCCCC--------CCCCCCCceEEEEeCCEEEEEeeeecccCCCCCCEEEEEE
Q 022844 150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (291)
Q Consensus 150 ~Gt--~~qk~~~l~~l~~G~~~~~~a~tEp~~--------Gsd~~~~~t~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a 219 (291)
+|+ .+||++|||++++|+++.++|+|||++ |||+ .++++ .+++|||+|||+|.||||+..||+++|+|
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a 204 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC 204 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence 565 678899999999999999999999986 5787 55443 45688999999999999999999999999
Q ss_pred Ee-CC--CCCeEEEEEeCCCCCeEEeccCCccCc-----cc-----cceeeEEEeeeEeCCCCCc--CCC-CcHHHHHHH
Q 022844 220 RN-TT--TNQINGYLVKKDAPGLTVTKIENKIGL-----RI-----VQNGDILLKKVFVPDEDRL--PGV-NSFQDTSKV 283 (291)
Q Consensus 220 ~~-~~--~~~~~~flV~~~~~Gv~~~~~~~~~G~-----r~-----~~~~~v~f~~v~Vp~~~vl--g~~-~g~~~~~~~ 283 (291)
++ ++ .+.+++|+||+++|||++...+.++|. +. ..+++|.||||+||.+++| |+. .|+..++..
T Consensus 205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~ 284 (515)
T 3hwc_A 205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI 284 (515)
T ss_dssp CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence 97 32 123899999999999999876766662 22 2388999999999999999 664 477655433
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.66 E-value=3.7e-16 Score=147.78 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCCCCC-----CCCCce-EEEEeCCEEEEEeeeecccCCCCCCEEEEEEEeCC---C
Q 022844 154 EQKQKYLPSLAQLNTIACWALTEPAYGSD-----ASALNT-TATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT---T 224 (291)
Q Consensus 154 ~qk~~~l~~l~~G~~~~~~a~tEp~~Gsd-----~~~~~t-~a~~~~~g~~LnG~K~~it~~~~a~~~lv~a~~~~---~ 224 (291)
+...+|+..+..+.+..+.++|+|...-. ...+-. ..+++++||+|||.|.|+||+..||+++|++++.. .
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 55678999999999999999999973111 111112 34567899999999999999999999999998742 2
Q ss_pred CCeEEEEEeCCCCCeEEeccCCccC---------cccc-ceeeEEEeeeEeCCCCCc--CCCC-cHHHHHHHHHhhc
Q 022844 225 NQINGYLVKKDAPGLTVTKIENKIG---------LRIV-QNGDILLKKVFVPDEDRL--PGVN-SFQDTSKVRLLCS 288 (291)
Q Consensus 225 ~~~~~flV~~~~~Gv~~~~~~~~~G---------~r~~-~~~~v~f~~v~Vp~~~vl--g~~~-g~~~~~~~~~~~r 288 (291)
++.++|+||.++|||++...+..++ .++. ..+.|.||||+||.++|+ |+.+ ++...+..++..|
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~ 290 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLH 290 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHH
Confidence 4578999999999999854433333 3332 347899999999999987 6643 5566666565544
Done!