BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022845
         (291 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
           OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 202 SSSSRSEKPPSNQVVVLRVSLHCKGCEGKVRKHLSRMKDFA-------AKKVTVVGDVTP 254
           S   + +K    Q V ++V + C+GCE KVR+ +  MK  +       A KVTVVG V P
Sbjct: 14  SHGHKIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDP 73

Query: 255 LSVLASISKV--KNAQFWP 271
             V+A +S    K  + WP
Sbjct: 74  NKVVARMSHRTGKKVELWP 92


>sp|A7Y3K2|YCF1_IPOPU Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3
            SV=1
          Length = 2057

 Score = 38.9 bits (89), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 78   KPNNNKKSSSSSSKKSSSDKKKKSSSNSKPLAEQTNKILSSTNNDATIYKDCYTAMPADI 137
            K N+ KKS ++S KKS +D +KKS ++S+  +E  ++  S T+++     D       D 
Sbjct: 1752 KTNSEKKSKTNSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDS 1811

Query: 138  KKKS 141
            +KKS
Sbjct: 1812 EKKS 1815



 Score = 33.5 bits (75), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 83   KKSSSSSSKKSSSDKKKKSSSNSKPLAEQTNKILSSTNNDATIYKDCYTAMPADIKKKS 141
            KKS ++S KKS ++ +KKS ++S+  +E  ++  S T+++     D       D +KKS
Sbjct: 1749 KKSKTNSEKKSKTNSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKS 1807


>sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1
          Length = 870

 Score = 36.2 bits (82), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 106 KPLAEQTNKILSSTNNDATIYKDCYTAMPADIKKKSCAQLGDFITPPGSSRYLLSDAGFI 165
           KP+A  +  +LS++N  A  +     AMP  I K+ C QL   I PP   +Y        
Sbjct: 126 KPIAVGSMSMLSTSNYHARRF-GVRAAMPGFIAKRLCPQL--IIVPPNFDKYRAVSKEVK 182

Query: 166 DGLSDYDP 173
           + L+DYDP
Sbjct: 183 EILADYDP 190


>sp|A2AM05|CNTLN_MOUSE Centlein OS=Mus musculus GN=Cntln PE=1 SV=1
          Length = 1397

 Score = 33.1 bits (74), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 19/107 (17%)

Query: 25   EASSSSTIHLGGR--AIDRHNPIIRDGRRLAKALPSAPCSSEPLPINPKPYHQLPKPNNN 82
            + SSSSTI L  R  ++ + N ++++ RR A+A      + E    N K  HQ    ++ 
Sbjct: 966  QKSSSSTISLRERIVSLQQQNSLLQNARRAAEA-----SAKEYKEANEKLLHQQQVSDHR 1020

Query: 83   KKSSSSSSKKSSSD------------KKKKSSSNSKPLAEQTNKILS 117
             ++S  + KK + D            KK +SSS+   LAE+ ++I++
Sbjct: 1021 FQTSRQTIKKLTLDLAELRKEKEDLLKKVESSSDIMSLAEEVSRIMA 1067


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.124    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,413,196
Number of Sequences: 539616
Number of extensions: 4397988
Number of successful extensions: 39504
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 33784
Number of HSP's gapped (non-prelim): 3713
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)