Query 022845
Match_columns 291
No_of_seqs 164 out of 1094
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.3 7.4E-12 1.6E-16 95.1 7.8 62 211-272 2-72 (73)
2 PF00403 HMA: Heavy-metal-asso 98.7 2.3E-08 5.1E-13 71.9 6.1 49 217-265 1-61 (62)
3 COG2608 CopZ Copper chaperone 98.6 1.6E-07 3.4E-12 71.2 6.8 58 213-270 1-70 (71)
4 KOG4656 Copper chaperone for s 98.6 2E-07 4.2E-12 85.8 7.7 64 212-275 5-76 (247)
5 PLN02957 copper, zinc superoxi 97.5 0.00043 9.2E-09 63.5 8.6 65 212-276 4-76 (238)
6 PRK10671 copA copper exporting 97.1 0.0011 2.5E-08 69.9 7.5 57 213-271 2-67 (834)
7 TIGR00003 copper ion binding p 94.0 0.41 8.9E-06 30.5 6.9 51 213-263 1-62 (68)
8 COG2217 ZntA Cation transport 91.6 0.38 8.2E-06 51.3 6.3 55 214-269 2-69 (713)
9 PRK10671 copA copper exporting 89.0 0.94 2E-05 48.3 6.6 57 214-270 99-164 (834)
10 KOG0207 Cation transport ATPas 83.2 2.6 5.7E-05 46.4 6.3 58 214-271 146-215 (951)
11 PRK11033 zntA zinc/cadmium/mer 72.6 7.8 0.00017 41.3 6.0 56 213-269 52-118 (741)
12 KOG0207 Cation transport ATPas 65.7 9.1 0.0002 42.4 4.9 53 221-273 2-64 (951)
13 PF02662 FlpD: Methyl-viologen 21.7 2.4E+02 0.0053 23.6 5.4 49 222-270 5-58 (124)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.31 E-value=7.4e-12 Score=95.06 Aligned_cols=62 Identities=42% Similarity=0.841 Sum_probs=57.1
Q ss_pred CCCeEEEEEEeccchhHHHHHHHHHhhcC-------CCCCCeEEEEccCCHHHHHHHHHh-c-CcEEEccC
Q 022845 211 PSNQVVVLRVSLHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGDVTPLSVLASISK-V-KNAQFWPA 272 (291)
Q Consensus 211 ~~mqtVvLKV~MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~vDp~~LvkaLrK-G-K~AeL~s~ 272 (291)
..+++++|+|+|||+||+.+|++.|..++ |+.+++|||.|.++|..|++.|++ + +++++|..
T Consensus 2 ~~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~~ 72 (73)
T KOG1603|consen 2 PPIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWKV 72 (73)
T ss_pred CCccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEecC
Confidence 35678999999999999999999999988 999999999999999999999997 5 89999853
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.75 E-value=2.3e-08 Score=71.92 Aligned_cols=49 Identities=35% Similarity=0.580 Sum_probs=44.1
Q ss_pred EEEE-eccchhHHHHHHHHHhhcC-------CCCCCeEEEEccC---CHHHHHHHHHh-cC
Q 022845 217 VLRV-SLHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGDV---TPLSVLASISK-VK 265 (291)
Q Consensus 217 vLKV-~MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~v---Dp~~LvkaLrK-GK 265 (291)
+|+| +|+|++|+.+|+++|.+++ |+..++|+|.+.. ++++|.++|++ |+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 5889 6999999999999999998 9999999999874 45999999997 65
No 3
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.6e-07 Score=71.24 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=48.9
Q ss_pred CeEEEEEEe-ccchhHHHHHHHHHhhcC-------CCCC--CeEEEEc-cCCHHHHHHHHHh-cCcEEEc
Q 022845 213 NQVVVLRVS-LHCKGCEGKVRKHLSRMK-------DFAA--KKVTVVG-DVTPLSVLASISK-VKNAQFW 270 (291)
Q Consensus 213 mqtVvLKV~-MhCeGCa~KVkKaL~kLd-------Dl~~--kKVTV~G-~vDp~~LvkaLrK-GK~AeL~ 270 (291)
|..+.|+|. |+|++|+.+|+++|.+++ |+.. ..|++.+ .++.+.|+++|++ |+.++.+
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 456899995 999999999999999998 8888 4555556 6999999999997 7877654
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.55 E-value=2e-07 Score=85.78 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=59.1
Q ss_pred CCeEEEEEEeccchhHHHHHHHHHhhcC-------CCCCCeEEEEccCCHHHHHHHHHh-cCcEEEccCCCC
Q 022845 212 SNQVVVLRVSLHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGDVTPLSVLASISK-VKNAQFWPAAAA 275 (291)
Q Consensus 212 ~mqtVvLKV~MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~vDp~~LvkaLrK-GK~AeL~s~~~~ 275 (291)
....++|.|.|||++|++.|+++|..+. |++++.|.|.+.+.+..|..+|+. |++|.|.+.+.+
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKP 76 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCch
Confidence 3457999999999999999999999887 999999999999999999999997 799999988765
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=97.52 E-value=0.00043 Score=63.45 Aligned_cols=65 Identities=18% Similarity=0.422 Sum_probs=56.9
Q ss_pred CCeEEEEEEeccchhHHHHHHHHHhhcC-------CCCCCeEEEEccCCHHHHHHHHHh-cCcEEEccCCCCC
Q 022845 212 SNQVVVLRVSLHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGDVTPLSVLASISK-VKNAQFWPAAAAA 276 (291)
Q Consensus 212 ~mqtVvLKV~MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~vDp~~LvkaLrK-GK~AeL~s~~~~~ 276 (291)
..+.++|.|.|+|+.|+.+|+++|.+++ ++..++++|.+..+...|+++|++ |+.+++++.+.+.
T Consensus 4 ~~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 4 PELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE 76 (238)
T ss_pred CcEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 4567889999999999999999998877 899999999988899999999987 7899999875554
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.12 E-value=0.0011 Score=69.90 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=49.6
Q ss_pred CeEEEEEEe-ccchhHHHHHHHHHhhcC-------CCCCCeEEEEccCCHHHHHHHHHh-cCcEEEcc
Q 022845 213 NQVVVLRVS-LHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGDVTPLSVLASISK-VKNAQFWP 271 (291)
Q Consensus 213 mqtVvLKV~-MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~vDp~~LvkaLrK-GK~AeL~s 271 (291)
+++++|.|+ |+|++|+.+|+++|.+++ ++ ++++|.+..+++.|.+++++ |+.+++..
T Consensus 2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSI--TEAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEee--eEEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 468999995 999999999999999998 66 56778888899999999998 78888753
No 7
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=93.99 E-value=0.41 Score=30.46 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=38.2
Q ss_pred CeEEEEEEe-ccchhHHHHHHHHHhhcC-------CCCCCeEEEEc---cCCHHHHHHHHHh
Q 022845 213 NQVVVLRVS-LHCKGCEGKVRKHLSRMK-------DFAAKKVTVVG---DVTPLSVLASISK 263 (291)
Q Consensus 213 mqtVvLKV~-MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G---~vDp~~LvkaLrK 263 (291)
|+++.|.|. |+|..|...|.+.+..+. ++....+.|.. ..+...+...+..
T Consensus 1 ~~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (68)
T TIGR00003 1 KQKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILD 62 (68)
T ss_pred CcEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 345778995 999999999999988765 67777777763 3567777666654
No 8
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.63 E-value=0.38 Score=51.30 Aligned_cols=55 Identities=27% Similarity=0.576 Sum_probs=46.0
Q ss_pred eEEEEEEe-ccchhHHHHHHHHHhhcC-------CCCCCeEEEEcc---CC-HHHHHHHHHh-cCcEEE
Q 022845 214 QVVVLRVS-LHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGD---VT-PLSVLASISK-VKNAQF 269 (291)
Q Consensus 214 qtVvLKV~-MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~---vD-p~~LvkaLrK-GK~AeL 269 (291)
..+.|.|. |||..|+.+|+ +|.+++ ++...+++|... .+ ++.+..++++ |+.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 45789995 99999999999 999988 899999998853 45 7899999987 776654
No 9
>PRK10671 copA copper exporting ATPase; Provisional
Probab=89.04 E-value=0.94 Score=48.32 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=46.6
Q ss_pred eEEEEEEe-ccchhHHHHHHHHHhhcC-------CCCCCeEEEEccCCHHHHHHHHHh-cCcEEEc
Q 022845 214 QVVVLRVS-LHCKGCEGKVRKHLSRMK-------DFAAKKVTVVGDVTPLSVLASISK-VKNAQFW 270 (291)
Q Consensus 214 qtVvLKV~-MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G~vDp~~LvkaLrK-GK~AeL~ 270 (291)
.++.|.|. |+|.+|+..|++.+..++ ++..+++.|.+..++..+.+.++. |+.+.++
T Consensus 99 ~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~ 164 (834)
T PRK10671 99 DSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164 (834)
T ss_pred ceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence 35788885 999999999999999876 677778888777888888888887 6766654
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=83.22 E-value=2.6 Score=46.42 Aligned_cols=58 Identities=26% Similarity=0.449 Sum_probs=49.6
Q ss_pred eEEEEEE-eccchhHHHHHHHHHhhcC-------CCCCCeEEEEc---cCCHHHHHHHHHh-cCcEEEcc
Q 022845 214 QVVVLRV-SLHCKGCEGKVRKHLSRMK-------DFAAKKVTVVG---DVTPLSVLASISK-VKNAQFWP 271 (291)
Q Consensus 214 qtVvLKV-~MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G---~vDp~~LvkaLrK-GK~AeL~s 271 (291)
++++|.| +|+|.+|..+|++.|.+++ ++..+++.|.= ...|..+++.|+. +..+.+.+
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~ 215 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRP 215 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeee
Confidence 7899999 5999999999999999998 88999999873 3689999999986 56666554
No 11
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=72.59 E-value=7.8 Score=41.28 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=39.7
Q ss_pred CeEEEEEEe-ccchhHHHHHHHHHhhcC-------CCCCCeEEEEc--cCCHHHHHHHHHh-cCcEEE
Q 022845 213 NQVVVLRVS-LHCKGCEGKVRKHLSRMK-------DFAAKKVTVVG--DVTPLSVLASISK-VKNAQF 269 (291)
Q Consensus 213 mqtVvLKV~-MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~G--~vDp~~LvkaLrK-GK~AeL 269 (291)
-+.+.|.|. |+|.+|+..+++++..++ ++..+++.|.. ..+ ..+.+.++. |+.+..
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~-~~I~~aI~~~Gy~a~~ 118 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIR-AQVESAVQKAGFSLRD 118 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccch-HHHHHHHHhccccccc
Confidence 446778895 999999999999999876 56667777753 223 566666665 565543
No 12
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=65.71 E-value=9.1 Score=42.40 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=44.5
Q ss_pred eccchhHHHHHHHHHhhcC-------CCCCCeEEEE--ccCCHHHHHHHHHh-cCcEEEccCC
Q 022845 221 SLHCKGCEGKVRKHLSRMK-------DFAAKKVTVV--GDVTPLSVLASISK-VKNAQFWPAA 273 (291)
Q Consensus 221 ~MhCeGCa~KVkKaL~kLd-------Dl~~kKVTV~--G~vDp~~LvkaLrK-GK~AeL~s~~ 273 (291)
+|+|..|.+.|.+++.+.. ++.++..+|. ..++++.|.++|+. |+.+++....
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~ 64 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDS 64 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccC
Confidence 6999999999999999877 6666665554 55899999999998 8999988643
No 13
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.66 E-value=2.4e+02 Score=23.56 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHhhcC-CCCCCeEEE----EccCCHHHHHHHHHhcCcEEEc
Q 022845 222 LHCKGCEGKVRKHLSRMK-DFAAKKVTV----VGDVTPLSVLASISKVKNAQFW 270 (291)
Q Consensus 222 MhCeGCa~KVkKaL~kLd-Dl~~kKVTV----~G~vDp~~LvkaLrKGK~AeL~ 270 (291)
..|..|.-..-....... .+..+--+| .|.+++.-|++++++|-+..|+
T Consensus 5 F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V 58 (124)
T PF02662_consen 5 FCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLV 58 (124)
T ss_pred EEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEE
Confidence 458888866554444333 555554333 3999999999999998555544
Done!