BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022847
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 60 VVRPKGKHQATIVWLHGLSDKGSSWSQLLETLPLPNIKWICPTAPTRPVAIFGGYPCTAW 119
+V K A +++LHGL D G W++ + +IK+ICP AP RPV + +W
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSW 74
Query: 120 FDVGDLSEDGPDDLEGLDASAAHVANLLSTE-----PADIKLGIGGFSMGAAIALYSATC 174
FD+ LS D +D G+ +A ++ L+ E P++ ++ +GGFS G A++LY+A
Sbjct: 75 FDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALT 133
Query: 175 RILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHGSGDD 234
L+ + LS WLP + +G R S IL CHG D
Sbjct: 134 T-----------QQKLAGVTALSCWLPLRASFP---QGPIGGANRDIS--ILQCHGDCDP 177
Query: 235 VVAYKHGERSAQTLNS-VGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 284
+V G + + L + V ++TF+ Y G+ H + +EM +V+ ++ L
Sbjct: 178 LVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLL 228
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 60 VVRPKGKHQATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPVAIFGGYPCT 117
+++P A ++WLHGL + + E L L +++ P APTRPV I GGY
Sbjct: 6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMP 65
Query: 118 AWFDVGDLSEDGPDDLEGLDASAAHVANLLSTEPAD----IKLGIGGFSMGAAIALYSAT 173
+W+D+ +S LE L+ SA V +L+ + ++ + GFS G A+ ++A
Sbjct: 66 SWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAF 125
Query: 174 CRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHGSGD 233
G G ++ LS + P T +E S R +P L HG D
Sbjct: 126 INWQGPLGG----------VIALSTYAP---TFGDELELSASQQR----IPALCLHGQYD 168
Query: 234 DVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 284
DVV G + + L S G +T++ Y +GH +P+E+ ++ WL ARL
Sbjct: 169 DVVQNAMGRSAFEHLKSRGV-TVTWQEYP-MGHEVLPQEIHDIGAWLAARL 217
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 27/236 (11%)
Query: 60 VVRPKGKHQATIVWLHGLSDKGSSWSQLLE--TLPLPNIKWICPTAPTRPVAIFGGYPCT 117
++ P + + ++WLHGL G + ++ + L I++I P A PV I G
Sbjct: 29 LMEPAKQARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMR 88
Query: 118 AWFDVGDLSEDGPD---DLEGLDASAAHVANLLSTEP----ADIKLGIGGFSMGAAIALY 170
AW+D+ L + + D+EG+++S A V L+ ++ A + + GFS G IA Y
Sbjct: 89 AWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATY 148
Query: 171 SATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHG 230
+A L I+ LS +LP K ++ T LPIL+CHG
Sbjct: 149 TAITS-----------QRKLGGIMALSTYLPAWDNFKGKI------TSINKGLPILVCHG 191
Query: 231 SGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARLEL 286
+ D V+ G + L GF + ++ Y G+ H EE+ ++ N++ ++
Sbjct: 192 TDDQVLPEVLGHDLSDKLKVSGFAN-EYKHYVGMQHSVCMEEIKDISNFIAKTFKI 246
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 28/235 (11%)
Query: 60 VVRPKGKHQATIVWLHGLSDKGSS---W-SQLL-ETLPLPNIKWICPTAPTRPVAIFGGY 114
+V P G+H A++++LHG D G W Q+L + L +IK I PTAP R G
Sbjct: 15 IVSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGG 74
Query: 115 PCTAWFDVGDLSEDGPDDLEGLDASAAHVANLLSTE-PADIK---LGIGGFSMGAAIALY 170
WFD ++ D P+ LE +D + +L+ E + IK + IGGFSMG +A++
Sbjct: 75 ISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMH 134
Query: 171 SATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILL-CH 229
A Y N +++ + LS +L + + ++ S LP L CH
Sbjct: 135 LA-------YRNHQ----DVAGVFALSSFLNKASAVYQALQKSN------GVLPELFQCH 177
Query: 230 GSGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 284
G+ D++V + E + L S+G F + V H E+D ++ W+ +L
Sbjct: 178 GTADELVLHSWAEETNSMLKSLGVTT-KFHSFPNVYHELSKTELDILKLWILTKL 231
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 26/222 (11%)
Query: 69 ATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPVAIFGGYPCTAWFDVGDLS 126
A I+WLHGL + + + E L LP+ ++I P AP++ V + GG+ +W+D+ S
Sbjct: 25 ACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFS 84
Query: 127 EDGPDDLEGLDASAAHVANLLSTEPAD----IKLGIGGFSMGAAIALYSATCRILGQYGN 182
D + L+ASA V L+ + A ++ + GFS G A+ L++A R
Sbjct: 85 PARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRR------- 137
Query: 183 GNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHGSGDDVVAYKHGE 242
Y+ L ++ LS + P L R +P+L HGS DDVV G
Sbjct: 138 ---YAQPLGGVLALSTYAPTFDDLA--------LDERHKRIPVLHLHGSQDDVVDPALGR 186
Query: 243 RSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 284
+ L + G ++ + Y +GH EE+ ++ WL RL
Sbjct: 187 AAHDALQAQGV-EVGWHDYP-MGHEVSLEEIHDIGAWLRKRL 226
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 89/250 (35%), Gaps = 50/250 (20%)
Query: 51 RPFEFGRTHVVRPKGKHQATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPV 108
R FGR G+ + +V+LHG G+ L E L LP ++ P AP
Sbjct: 51 RKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPE--- 105
Query: 109 AIFGGYPCTA------WFDVGDLSEDGPDDLEGL--------DASAAHVANLLSTEPADI 154
PC A WF + L DG + D A H L
Sbjct: 106 ------PCRACGFGFQWFPIPWL--DGSSETAAAEGMAAAARDLDAFHDERLAEEGLPPE 157
Query: 155 KLGIGGFSMGAAIALYSATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSR 214
L + GFS G +AL+ A R + ++ IVG SG L + R
Sbjct: 158 ALALVGFSQGTMMALHVAPRR-----------AEEIAGIVGFSGRL---------LAPER 197
Query: 215 EATRRAASLPILLCHGSGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMD 274
A + P+LL HG D VV + + + L GF G GH P+ +
Sbjct: 198 LAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG-HVMKGTGHGIAPDGLS 256
Query: 275 EVRNWLTARL 284
+L RL
Sbjct: 257 VALAFLKERL 266
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 95/251 (37%), Gaps = 52/251 (20%)
Query: 51 RPFEFGRTHVVRPKGKHQATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPV 108
R FGR G+ + +V+LHG G+ L E L LP ++ P AP
Sbjct: 51 RKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPE--- 105
Query: 109 AIFGGYPCTA------WFDVGDLSEDGPDDLEGLDASAAHVANL-------LSTE--PAD 153
PC A WF + L DG + + AA +L L+ E P +
Sbjct: 106 ------PCRANGFGFQWFPIPWL--DGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPE 157
Query: 154 IKLGIGGFSMGAAIALYSATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGS 213
L + GFS G +AL+ A R + ++ IVG SG L +
Sbjct: 158 -ALALVGFSQGTMMALHVAPRR-----------AEEIAGIVGFSGRL---------LAPE 196
Query: 214 REATRRAASLPILLCHGSGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEM 273
R A + P+LL HG D VV + + + L GF G GH P+ +
Sbjct: 197 RLAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG-HVMKGTGHGIAPDGL 255
Query: 274 DEVRNWLTARL 284
+L RL
Sbjct: 256 SVALAFLKERL 266
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 108 VAIFGGYPCTAWFDVGDLSEDGPDDLEGLDASAAHVANLLSTE 150
+ IF Y WF +G GP+ L + A HV N L+TE
Sbjct: 1 MTIFDNYEV--WFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|3K2I|A Chain A, Human Acyl-Coenzyme A Thioesterase 4
pdb|3K2I|B Chain B, Human Acyl-Coenzyme A Thioesterase 4
Length = 422
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 127 EDGPDDLEGLDASAAHVANLLSTEPADIK---LGIGGFSMGAAIAL--------YSATCR 175
ED P++++ + A + +K +G+ G S+GA I L SAT
Sbjct: 195 EDLPNNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVS 254
Query: 176 ILGQYGNGN-----------PYSVNLSAI-VGLSGWLPCSRTLKSRMEGSREATR---RA 220
I G +GN P +L I V SG + + + G + +
Sbjct: 255 INGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEK 314
Query: 221 ASLPILLCHGSGD-DVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVP 270
A PILL G D + + + + ++ L + G CY G GHY P
Sbjct: 315 AQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEP 365
>pdb|1EYS|L Chain L, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 280
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 125 LSEDGPDDLEGLDASAAHVANLLSTEPADIKLGIG-------GFSMGAAIALYSATCRIL 177
L+E G + + A+ A ++ L KLGIG F++GA + L ++
Sbjct: 88 LTEGGLWQIITICAAGAFISWALREVEICRKLGIGFHVPFAFSFAIGAYLVLVFVRPLLM 147
Query: 178 GQYGNGNPYSV 188
G +G+G PY +
Sbjct: 148 GAWGHGFPYGI 158
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 110 IFGGYPCTAWFDVGDLSEDGPDDLEGLDASAAHVANLLSTE 150
IF Y WF +G GP+ L + A HV N L+TE
Sbjct: 3 IFDNYEV--WFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,867,140
Number of Sequences: 62578
Number of extensions: 371624
Number of successful extensions: 971
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 12
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)