Query 022848
Match_columns 291
No_of_seqs 204 out of 1458
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00012 chlorophyll synthetas 100.0 8.6E-50 1.9E-54 379.7 26.5 271 21-291 20-292 (375)
2 TIGR02056 ChlG chlorophyll syn 100.0 1.8E-39 3.9E-44 302.7 23.7 222 70-291 1-223 (306)
3 PRK07566 bacteriochlorophyll/c 100.0 5.5E-39 1.2E-43 300.4 24.0 218 67-291 10-229 (314)
4 TIGR01476 chlor_syn_BchG bacte 100.0 2.4E-36 5.2E-41 278.7 20.8 201 85-291 1-201 (283)
5 PRK12392 bacteriochlorophyll c 100.0 2.9E-34 6.3E-39 269.7 23.1 210 81-291 9-220 (331)
6 PRK12887 ubiA tocopherol phyty 100.0 2.8E-32 6.1E-37 254.4 21.2 202 82-291 11-222 (308)
7 PRK05951 ubiA prenyltransferas 100.0 3.6E-32 7.8E-37 252.5 21.7 200 82-291 2-211 (296)
8 PRK06080 1,4-dihydroxy-2-napht 100.0 4.3E-32 9.3E-37 251.4 22.0 199 83-291 2-208 (293)
9 PRK13387 1,4-dihydroxy-2-napht 100.0 5.5E-32 1.2E-36 253.3 21.4 199 83-291 2-229 (317)
10 PRK09573 (S)-2,3-di-O-geranylg 100.0 3.5E-32 7.5E-37 250.6 19.7 193 83-291 2-194 (279)
11 PRK12882 ubiA prenyltransferas 100.0 1.6E-31 3.4E-36 245.8 19.8 195 82-291 2-197 (276)
12 PRK07419 1,4-dihydroxy-2-napht 100.0 4.6E-31 1E-35 245.4 22.6 201 79-291 7-214 (304)
13 PRK12884 ubiA prenyltransferas 100.0 3.9E-31 8.5E-36 243.3 20.7 194 81-291 1-195 (279)
14 PRK13595 ubiA prenyltransferas 100.0 7.1E-31 1.5E-35 241.4 21.5 199 82-291 10-209 (292)
15 PRK12883 ubiA prenyltransferas 100.0 7.4E-31 1.6E-35 241.4 21.1 192 83-291 2-194 (277)
16 TIGR01475 ubiA_other putative 100.0 9E-31 2E-35 241.5 21.1 192 83-291 1-198 (282)
17 PRK12874 ubiA prenyltransferas 100.0 1.6E-30 3.5E-35 240.8 22.0 196 81-291 5-207 (291)
18 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.6E-30 3.5E-35 240.0 20.8 193 92-291 1-204 (284)
19 PRK12895 ubiA prenyltransferas 100.0 1.4E-30 3E-35 240.2 19.9 194 83-291 2-199 (286)
20 PRK12886 ubiA prenyltransferas 100.0 3.4E-30 7.3E-35 238.7 22.6 195 82-291 6-202 (291)
21 PLN02922 prenyltransferase 100.0 3.1E-30 6.8E-35 241.0 22.5 202 79-291 10-228 (315)
22 PRK04375 protoheme IX farnesyl 100.0 2.3E-30 4.9E-35 240.5 21.4 200 78-291 4-207 (296)
23 PRK12847 ubiA 4-hydroxybenzoat 100.0 3.6E-30 7.8E-35 237.9 22.0 195 82-291 5-205 (285)
24 PRK13106 ubiA prenyltransferas 100.0 4E-30 8.8E-35 238.8 20.7 196 81-291 12-217 (300)
25 PRK12888 ubiA prenyltransferas 100.0 5.4E-30 1.2E-34 236.5 20.4 192 83-291 1-199 (284)
26 PRK12869 ubiA protoheme IX far 100.0 1.2E-29 2.5E-34 233.9 22.2 194 83-291 1-199 (279)
27 PRK12870 ubiA 4-hydroxybenzoat 100.0 5.7E-30 1.2E-34 237.1 19.7 196 81-291 6-206 (290)
28 PRK12878 ubiA 4-hydroxybenzoat 100.0 1.2E-29 2.6E-34 237.2 21.9 197 80-291 26-232 (314)
29 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.4E-29 3.1E-34 233.6 21.5 196 81-291 2-202 (282)
30 COG1575 MenA 1,4-dihydroxy-2-n 100.0 3.9E-29 8.5E-34 229.1 21.6 203 79-291 3-216 (303)
31 TIGR02235 menA_cyano-plnt 1,4- 100.0 3.9E-29 8.5E-34 230.8 21.4 193 87-291 2-201 (285)
32 TIGR01474 ubiA_proteo 4-hydrox 100.0 5.1E-29 1.1E-33 229.8 20.8 192 86-291 6-200 (281)
33 PRK13362 protoheme IX farnesyl 100.0 1.2E-28 2.6E-33 229.7 21.2 197 81-291 10-210 (306)
34 COG0382 UbiA 4-hydroxybenzoate 100.0 7.7E-29 1.7E-33 229.4 19.6 194 82-291 11-207 (289)
35 PLN02809 4-hydroxybenzoate non 100.0 1.9E-28 4.1E-33 226.7 21.2 195 82-291 4-206 (289)
36 TIGR01473 cyoE_ctaB protoheme 100.0 1.7E-28 3.6E-33 226.2 20.7 192 85-291 1-198 (280)
37 PRK13105 ubiA prenyltransferas 100.0 5E-28 1.1E-32 222.8 21.0 199 84-291 1-200 (282)
38 PRK12873 ubiA prenyltransferas 100.0 1.3E-27 2.7E-32 221.1 20.9 200 81-291 4-210 (294)
39 PRK12876 ubiA prenyltransferas 100.0 1E-27 2.2E-32 221.8 19.8 196 82-291 2-212 (300)
40 PLN02878 homogentisate phytylt 100.0 1.2E-27 2.6E-32 217.8 15.8 166 120-291 21-196 (280)
41 PRK12871 ubiA prenyltransferas 100.0 9.8E-27 2.1E-31 216.0 21.2 195 82-291 3-215 (297)
42 PRK12875 ubiA prenyltransferas 99.9 1.3E-25 2.7E-30 207.1 21.5 198 80-291 4-205 (282)
43 PF01040 UbiA: UbiA prenyltran 99.9 4.7E-26 1E-30 205.1 15.0 181 97-291 2-186 (257)
44 PRK12872 ubiA prenyltransferas 99.9 1.5E-25 3.2E-30 206.7 18.0 198 82-291 2-201 (285)
45 PLN02776 prenyltransferase 99.9 3.1E-24 6.7E-29 201.5 21.0 184 90-290 1-190 (341)
46 COG0109 CyoE Polyprenyltransfe 99.9 3E-25 6.6E-30 203.1 13.3 197 80-290 14-214 (304)
47 PRK13591 ubiA prenyltransferas 99.9 7.1E-22 1.5E-26 182.8 20.8 147 131-291 67-219 (307)
48 PRK12324 phosphoribose diphosp 99.9 1.5E-21 3.2E-26 181.0 19.8 152 81-247 8-162 (295)
49 PRK08238 hypothetical protein; 99.9 3E-21 6.4E-26 189.8 20.9 189 79-284 186-377 (479)
50 PRK13592 ubiA prenyltransferas 99.9 4E-21 8.6E-26 176.5 14.1 145 130-291 54-213 (299)
51 KOG1381 Para-hydroxybenzoate-p 99.8 8.8E-20 1.9E-24 163.5 9.2 199 79-291 59-264 (353)
52 KOG4581 Predicted membrane pro 99.7 1.9E-18 4.2E-23 151.8 0.1 219 70-291 47-269 (359)
53 KOG1380 Heme A farnesyltransfe 99.7 2.3E-17 4.9E-22 151.1 6.7 189 82-289 92-287 (409)
54 PRK13591 ubiA prenyltransferas 94.4 0.21 4.6E-06 46.9 8.4 72 140-216 197-273 (307)
55 PRK12888 ubiA prenyltransferas 92.9 1.9 4.1E-05 40.0 12.0 33 131-163 168-201 (284)
56 PRK12872 ubiA prenyltransferas 92.6 2.4 5.2E-05 38.9 12.3 45 133-180 172-217 (285)
57 TIGR02056 ChlG chlorophyll syn 92.4 2.3 5E-05 39.8 12.0 41 133-176 194-235 (306)
58 PLN00012 chlorophyll synthetas 92.3 1.6 3.5E-05 42.2 11.1 31 133-163 263-294 (375)
59 PRK12884 ubiA prenyltransferas 92.2 1.4 3.1E-05 40.3 10.2 32 132-163 165-197 (279)
60 PRK12847 ubiA 4-hydroxybenzoat 91.7 1.7 3.8E-05 40.1 10.3 33 131-163 174-207 (285)
61 PRK07566 bacteriochlorophyll/c 91.7 3.5 7.5E-05 38.8 12.4 30 134-163 201-231 (314)
62 TIGR01474 ubiA_proteo 4-hydrox 91.7 1.9 4.2E-05 39.7 10.5 35 129-163 167-202 (281)
63 TIGR01475 ubiA_other putative 91.5 2.3 5E-05 39.1 10.8 33 131-163 167-200 (282)
64 PRK12392 bacteriochlorophyll c 91.2 2.5 5.5E-05 40.1 10.9 44 131-177 189-233 (331)
65 PRK12875 ubiA prenyltransferas 91.0 10 0.00022 35.2 14.6 54 131-187 174-228 (282)
66 COG1575 MenA 1,4-dihydroxy-2-n 91.0 2.8 6.2E-05 39.3 10.8 28 132-159 186-213 (303)
67 PRK12874 ubiA prenyltransferas 90.9 2.2 4.7E-05 39.8 10.0 33 131-163 176-209 (291)
68 PRK12871 ubiA prenyltransferas 90.6 2.9 6.3E-05 39.1 10.6 33 131-163 184-217 (297)
69 COG3476 Tryptophan-rich sensor 89.8 12 0.00025 32.0 14.1 121 134-264 19-143 (161)
70 TIGR01476 chlor_syn_BchG bacte 89.8 5.1 0.00011 36.8 11.5 39 134-175 173-212 (283)
71 PRK07419 1,4-dihydroxy-2-napht 89.5 3.6 7.9E-05 38.6 10.3 44 133-179 185-229 (304)
72 PRK12886 ubiA prenyltransferas 88.8 5.9 0.00013 36.9 11.1 32 132-163 172-204 (291)
73 PRK12870 ubiA 4-hydroxybenzoat 88.2 4.1 8.9E-05 37.8 9.7 36 130-165 174-210 (290)
74 PRK12895 ubiA prenyltransferas 88.0 5.1 0.00011 37.3 10.1 35 129-163 166-201 (286)
75 PRK12848 ubiA 4-hydroxybenzoat 87.4 6.1 0.00013 36.5 10.2 34 130-163 170-204 (282)
76 PRK13387 1,4-dihydroxy-2-napht 87.1 4 8.6E-05 38.5 9.0 45 133-180 200-245 (317)
77 PRK12882 ubiA prenyltransferas 87.1 6.4 0.00014 36.0 10.2 43 132-177 167-210 (276)
78 PRK12878 ubiA 4-hydroxybenzoat 86.9 7.5 0.00016 36.6 10.7 33 131-163 201-234 (314)
79 PRK09573 (S)-2,3-di-O-geranylg 86.6 2.6 5.6E-05 38.7 7.3 32 132-163 164-196 (279)
80 PRK06080 1,4-dihydroxy-2-napht 86.6 6.4 0.00014 36.3 10.0 48 132-182 178-226 (293)
81 PRK13106 ubiA prenyltransferas 86.4 3.9 8.5E-05 38.3 8.5 35 128-162 183-218 (300)
82 TIGR02235 menA_cyano-plnt 1,4- 85.5 9.1 0.0002 35.5 10.4 46 133-181 172-218 (285)
83 PRK12887 ubiA tocopherol phyty 85.4 4.6 9.9E-05 37.9 8.4 31 132-162 192-223 (308)
84 PRK12873 ubiA prenyltransferas 83.7 16 0.00035 34.1 11.2 34 130-163 178-212 (294)
85 PRK13592 ubiA prenyltransferas 83.1 3.8 8.2E-05 38.4 6.6 31 252-282 47-77 (299)
86 COG0382 UbiA 4-hydroxybenzoate 82.5 16 0.00034 33.7 10.6 34 129-162 174-208 (289)
87 PLN02809 4-hydroxybenzoate non 81.1 36 0.00078 31.6 12.5 33 131-163 175-208 (289)
88 PRK12883 ubiA prenyltransferas 80.5 20 0.00044 32.7 10.6 30 134-163 166-196 (277)
89 PLN02922 prenyltransferase 80.1 12 0.00025 35.4 8.9 44 133-178 199-242 (315)
90 PRK12876 ubiA prenyltransferas 79.8 38 0.00083 31.8 12.1 33 131-163 181-214 (300)
91 TIGR00751 menA 1,4-dihydroxy-2 79.6 18 0.00039 33.5 9.9 45 133-179 175-219 (284)
92 PRK13105 ubiA prenyltransferas 79.5 6.1 0.00013 36.7 6.7 51 133-186 171-222 (282)
93 PRK04375 protoheme IX farnesyl 78.4 24 0.00052 32.7 10.4 32 132-163 177-209 (296)
94 PRK12869 ubiA protoheme IX far 78.1 30 0.00066 31.8 10.9 30 134-163 171-201 (279)
95 TIGR01473 cyoE_ctaB protoheme 76.6 32 0.00069 31.5 10.6 22 142-163 178-200 (280)
96 PRK05951 ubiA prenyltransferas 76.4 23 0.00051 32.8 9.7 23 133-155 182-204 (296)
97 PRK12324 phosphoribose diphosp 75.9 5.9 0.00013 37.0 5.6 25 258-282 53-77 (295)
98 PRK13595 ubiA prenyltransferas 68.0 1.1E+02 0.0023 28.7 13.3 53 133-188 180-233 (292)
99 PF12670 DUF3792: Protein of u 67.0 57 0.0012 25.9 8.7 51 196-248 41-91 (116)
100 PLN02878 homogentisate phytylt 62.6 57 0.0012 30.4 8.9 39 134-175 168-207 (280)
101 KOG3146 Dolichyl pyrophosphate 62.2 68 0.0015 28.7 8.8 39 208-249 141-179 (228)
102 PRK08238 hypothetical protein; 61.8 11 0.00024 37.6 4.4 27 257-283 232-258 (479)
103 PF01040 UbiA: UbiA prenyltran 58.5 21 0.00045 31.5 5.3 37 246-282 17-54 (257)
104 PRK04214 rbn ribonuclease BN/u 57.4 1.4E+02 0.0029 29.2 11.1 17 133-149 116-132 (412)
105 PRK13362 protoheme IX farnesyl 53.1 1.9E+02 0.0042 27.0 10.9 21 143-163 191-212 (306)
106 PLN02776 prenyltransferase 46.9 2.7E+02 0.0058 26.7 13.8 39 144-182 173-214 (341)
107 cd00867 Trans_IPPS Trans-Isopr 46.0 41 0.00088 29.4 5.0 30 261-290 156-195 (236)
108 PF11990 DUF3487: Protein of u 43.9 99 0.0021 25.0 6.5 41 149-191 8-48 (121)
109 PF12046 DUF3529: Protein of u 36.1 1.1E+02 0.0024 26.4 5.9 57 158-214 70-128 (173)
110 COG5336 Uncharacterized protei 34.9 1.4E+02 0.0031 23.9 5.8 15 178-192 57-71 (116)
111 TIGR03750 conj_TIGR03750 conju 31.9 2.3E+02 0.005 22.7 6.7 41 149-191 5-45 (111)
112 PRK15119 undecaprenyl-phosphat 30.5 4.9E+02 0.011 25.1 10.0 33 204-236 193-229 (365)
113 TIGR02748 GerC3_HepT heptapren 28.7 1E+02 0.0022 28.9 5.0 46 131-179 72-117 (319)
114 TIGR02762 TraL_TIGR type IV co 28.6 1.8E+02 0.0039 22.3 5.5 31 150-184 7-37 (95)
115 PRK10692 hypothetical protein; 25.3 2.8E+02 0.0061 21.3 5.7 24 224-247 8-31 (92)
116 TIGR02748 GerC3_HepT heptapren 23.5 3.2E+02 0.007 25.6 7.3 78 82-166 157-237 (319)
117 PF10762 DUF2583: Protein of u 23.3 2.9E+02 0.0062 21.1 5.4 24 224-247 8-31 (89)
118 CHL00151 preA prenyl transfera 22.9 1.2E+02 0.0027 28.4 4.4 30 261-290 205-245 (323)
119 PF04971 Lysis_S: Lysis protei 22.7 76 0.0017 23.1 2.2 25 130-154 40-64 (68)
120 PF00348 polyprenyl_synt: Poly 22.4 1.4E+02 0.0029 27.0 4.4 48 131-181 42-89 (260)
121 TIGR02840 spore_YtaF putative 22.1 5.4E+02 0.012 22.5 11.8 26 160-185 122-147 (206)
122 cd00685 Trans_IPPS_HT Trans-Is 22.1 5.7E+02 0.012 22.8 12.8 32 259-290 177-219 (259)
123 TIGR02749 prenyl_cyano solanes 20.8 2.2E+02 0.0048 26.7 5.7 32 259-290 202-244 (322)
124 PLN02890 geranyl diphosphate s 20.4 4.2E+02 0.0092 26.1 7.6 79 81-166 254-335 (422)
125 PF04341 DUF485: Protein of un 20.2 1.7E+02 0.0036 22.2 3.8 33 121-153 57-89 (91)
No 1
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=8.6e-50 Score=379.73 Aligned_cols=271 Identities=81% Similarity=1.345 Sum_probs=241.0
Q ss_pred ccccccCCCCcccccccchhhhhccCCCCCCCCCCCCCCCC--CCCCcchhhhhccccccccchhHHHHHhhhCccchHH
Q 022848 21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAP--AASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP 98 (291)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~l~RP~~~~~ 98 (291)
+.+++...++.+...++||..+|+++++.+++++++|++++ .++++++|||+|+||++.|++++|+|++++||++|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~ 99 (375)
T PLN00012 20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP 99 (375)
T ss_pred hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence 45555666777788899999999999999999999888844 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHH
Q 022848 99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 178 (291)
Q Consensus 99 ~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~ 178 (291)
.++++++|++..+.++|....+...++++++++.++++++|++|||+|+|+|++|+|+||+++|++++++++.+++++++
T Consensus 100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~ 179 (375)
T PLN00012 100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 179 (375)
T ss_pred HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence 99999999997777777544444456777888899999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHH
Q 022848 179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258 (291)
Q Consensus 179 l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l 258 (291)
+++++++++..+.++.+|..+.+++++++++|+||.||+++||++++||+.+|..++.+|++++++++|.+++..+++++
T Consensus 180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal 259 (375)
T PLN00012 180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL 259 (375)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888888765544456777888888888999999999999999999999999999999988888889999999889999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 259 ~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+++++..++++.||++|+|+|+++|++|+||++
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~ 292 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAF 292 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceee
Confidence 999999999999999999999999999999975
No 2
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=1.8e-39 Score=302.66 Aligned_cols=222 Identities=78% Similarity=1.361 Sum_probs=194.2
Q ss_pred hhhcccccc-ccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 022848 70 QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE 148 (291)
Q Consensus 70 ~~~~~~~~~-~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~ 148 (291)
|+.+++|.+ .+++++|+|++++||++++.+++++++|+..++.++|...+....++++++++.++++++|++|||+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d 80 (306)
T TIGR02056 1 QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRD 80 (306)
T ss_pred CCCCcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 455666664 5668899999999999999999999999988777776432222334555667789999999999999999
Q ss_pred hhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhH
Q 022848 149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF 228 (291)
Q Consensus 149 ~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l 228 (291)
.|+.|+|+||+++|++++++++.+++.+.++++++++++..+.+..+|.++.+++++.+++++||.||+++||++++|++
T Consensus 81 ~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i 160 (306)
T TIGR02056 81 IDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNF 160 (306)
T ss_pred hhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHH
Confidence 99999999999999999999999999999999999988876655446778888888999999999999999999988999
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 229 ALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 229 ~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+|..++.+|++++++++|++++..+++++++++|..++++.||++|+|+|+++|+||+|+++
T Consensus 161 ~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~l 223 (306)
T TIGR02056 161 ALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAF 223 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhc
Confidence 999999888988878888999998889999999999999999999999999999999999975
No 3
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=5.5e-39 Score=300.35 Aligned_cols=218 Identities=56% Similarity=0.988 Sum_probs=187.6
Q ss_pred chhhhhccccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022848 67 SFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYD 146 (291)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D 146 (291)
.-||++|-||+++++++++.|++++||+++..++++.++|++.++.++|........++++++++.+.++++|++|||+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D 89 (314)
T PRK07566 10 KPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFD 89 (314)
T ss_pred ccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34799999999999999999999999999999999999998877666554221223345566778889999999999999
Q ss_pred hhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchh
Q 022848 147 REIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226 (291)
Q Consensus 147 ~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g 226 (291)
+|+|++|+|+||+++|++|+++++.++.++.++++.+++.++ +..+.+++++.+++++||.||+++||++++|
T Consensus 90 ~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~-------~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g 162 (314)
T PRK07566 90 REVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-------PWVFLAALLGLFLAWIYSAPPLRLKQNGWLG 162 (314)
T ss_pred cCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHC-------hHHHHHHHHHHHHHHHhcCCccccccccchh
Confidence 999999999999999999999999999998888888777654 4566777778888999999999999999889
Q ss_pred hHHHHHHHhHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 227 NFALGASYISLPWWAGQALF--GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 227 ~l~~g~~~g~lp~l~g~a~~--g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
|+++|++++.+|+++++... +.+++..++++++.+++..++++.||++|+|+|+++|+||+|+++
T Consensus 163 ~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~ 229 (314)
T PRK07566 163 NYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVF 229 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeE
Confidence 99999998888877764433 367888888888999999999999999999999999999999974
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=2.4e-36 Score=278.66 Aligned_cols=201 Identities=49% Similarity=0.802 Sum_probs=172.4
Q ss_pred HHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCcccccc
Q 022848 85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 164 (291)
Q Consensus 85 ~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~i 164 (291)
|+|++++||++++.+++++++|.++++....+..++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i 80 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII 80 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence 46899999999999999999999877422111112333456567788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHH
Q 022848 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA 244 (291)
Q Consensus 165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a 244 (291)
|+++++.+++++.+++++++++++. +....+++++.+.+++||.||+++||++++|++.+|++++.+|+..+++
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~l~~------~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~ 154 (283)
T TIGR01476 81 SLREVRWNWLVLTVAGLLVALVLGN------WLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA 154 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887753 3335667777888999999999999999889999999888888888777
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 245 ~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+.+++++..++.+++++++..++++.||++|+|+|+++|+||+|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~l 201 (283)
T TIGR01476 155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMI 201 (283)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEE
Confidence 77788888888889999999999999999999999999999999975
No 5
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=2.9e-34 Score=269.72 Aligned_cols=210 Identities=36% Similarity=0.619 Sum_probs=170.6
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCc
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI 159 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a-g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi 159 (291)
++++|+|++++||++++ .++|.++|..++ +...+........+.++++.+.+..+++|++|||+|+|+|++|+|.||+
T Consensus 9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl 87 (331)
T PRK12392 9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPI 87 (331)
T ss_pred hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCC
Confidence 46799999999998888 666766776665 3321111111112333445556777889999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (291)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~-~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp 238 (291)
++|++|+++++.+++++.+++++++++++...+. ..+..+..++++.+++++||.||+++||++++|+..+|++++..+
T Consensus 88 ~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~ 167 (331)
T PRK12392 88 PSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFIT 167 (331)
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999888765431 123344455677889999999999999999889999999998888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 239 ~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+..+.++.|++++..+++++..++|+.+++++||++|+|+|++.|+||+|+++
T Consensus 168 ~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~ 220 (331)
T PRK12392 168 FLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMI 220 (331)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEE
Confidence 87777888999888888888999999999999999999999999999999975
No 6
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.8e-32 Score=254.35 Aligned_cols=202 Identities=21% Similarity=0.211 Sum_probs=156.2
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhc--CC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCC
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag--~~-~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RP 158 (291)
+.++.|++++||++.+...+++..++.++. .. ..... .+...+..+++....+.+.+.+|||+|+|+|++|+|+||
T Consensus 11 ~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rP 89 (308)
T PRK12887 11 SWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLP 89 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCC
Confidence 568999999999999999999887776542 11 11101 122233333333344444444999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (291)
Q Consensus 159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp 238 (291)
+++|++|+++++.+.+++.++++++++.++ |..+.+++++.+++++||.||+|+||+++++++.++...|..+
T Consensus 90 iasG~ls~~~a~~~~~~~~~lal~la~~~~-------~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~ 162 (308)
T PRK12887 90 LAAGEFSRRQGQRIVIITGILALILAALLG-------PWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIV 162 (308)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHH
Confidence 999999999999999888888888887654 4567778888899999999999999999988887665555544
Q ss_pred HHHHHH-------hhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 239 WWAGQA-------LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 239 ~l~g~a-------~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.++.+. ..+.+++..++++++.++++.++++.||++|+|+|++.|+||+|+++
T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~l 222 (308)
T PRK12887 163 NLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRL 222 (308)
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHH
Confidence 333211 12356677788889999999999999999999999999999999874
No 7
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.6e-32 Score=252.53 Aligned_cols=200 Identities=17% Similarity=0.142 Sum_probs=169.1
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC---
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--- 154 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--- 154 (291)
.++|.|++++||++++.++.|+.+|.+++ +.++|. .++.++++.+++++++|++|||+|++.|..++
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~------~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt 75 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL------LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT 75 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 47899999999999999999999998765 345542 23444567788999999999999966544444
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (291)
Q Consensus 155 --p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~ 232 (291)
++||+++|++|+++++..+.++..+++.++..+... .++..+.+++++.+.++.||.||+++|++++ ||+.+++
T Consensus 76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~---~~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~ 151 (296)
T PRK05951 76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLD---RGIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY 151 (296)
T ss_pred CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence 789999999999999999998888888777665443 2466778888899999999999999999986 9999999
Q ss_pred HHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 233 ~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+|.+.+++. +.++|.+++..++.+++.++++.++.+.||++|+|+|+++|+||+|+++
T Consensus 152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~l 211 (296)
T PRK05951 152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIF 211 (296)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeE
Confidence 9987666554 6788999998889999999999999999999999999999999999975
No 8
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=4.3e-32 Score=251.37 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=169.3
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhch--hhhhc--CCC
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAI--NEP 155 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a---g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~--~~D~~--n~p 155 (291)
++|.|++++||+++..+++|+++|.+++ +.+++. . ++..+++.+++++++|.+|||+|+ +.|+. ++|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~-----~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~ 75 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL-----L-ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP 75 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence 5789999999999999999999998876 334431 2 333345677899999999999999 46754 458
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|+++++..+..+.++++++++++.... ++..+.+++++.+++++||.||.++|++++ ||+.+++.+|
T Consensus 76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G 151 (293)
T PRK06080 76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG 151 (293)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence 999999999999999999999998888888776543 456777788888899999999999999986 9999999888
Q ss_pred HHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 236 SLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 236 ~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+.+.++ +.+.|++++..++++++.++++.++++.||++|+|+|+++|+||+|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~l 208 (293)
T PRK06080 152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRL 208 (293)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeE
Confidence 7766654 6778889998999999999999999999999999999999999999975
No 9
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=5.5e-32 Score=253.31 Aligned_cols=199 Identities=15% Similarity=0.134 Sum_probs=169.7
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC----
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---- 154 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~---- 154 (291)
++|.|++++||++++.+++|+++|.+.+ +.++|. .++..+++.+++|+++|++|||+|++.|..++
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~------~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~ 75 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL------LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG 75 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence 4789999999999999999999998875 234431 23444456678999999999999998554443
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHH
Q 022848 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (291)
Q Consensus 155 p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~ 234 (291)
++|++++|.+++++++..++.+++++++++.++.... +|..+.+++++.+.+++||.||+++||+++ ||+.+++.+
T Consensus 76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~ 151 (317)
T PRK13387 76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM 151 (317)
T ss_pred CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence 7899999999999999999999999999998887764 577888899999999999999999999995 999999999
Q ss_pred hHHHHHHH-HHhhCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 235 ISLPWWAG-QALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 235 g~lp~l~g-~a~~g~~~~~~~l--------------------l~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
|...+.+. +.+++.+++..+. .++++++.+.++++.||++|+|+|+++|+||+|+++
T Consensus 152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~l 229 (317)
T PRK13387 152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYI 229 (317)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeE
Confidence 88776655 6777877765544 789999999999999999999999999999999985
No 10
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=3.5e-32 Score=250.56 Aligned_cols=193 Identities=31% Similarity=0.390 Sum_probs=161.1
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCcccc
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG 162 (291)
++|+|++++||+++...+++.++|+.++....+.. .. ++..+++.++.++++|++|||+|+|+|++|+|+||+++|
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~---~~-~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG 77 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDL---KG-IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG 77 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcch---HH-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence 58999999999999999999999988763322211 11 333445678899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHH
Q 022848 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG 242 (291)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g 242 (291)
++|+++++.++.++.++++.++++++ +..+.+++++.++.++||. ++||++++||+++|+.+|..++.++
T Consensus 78 ~is~~~a~~~~~~l~~~~~~l~~~l~-------~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~ 147 (279)
T PRK09573 78 RISLKEAKIFSITLFIVGLILSIFIN-------IYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG 147 (279)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887654 4567777778888999994 6999999999999999988877666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 243 ~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+..+ ....+++.+..++|+.++++.||++|+|+|+++|++|+|+++
T Consensus 148 ~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~ 194 (279)
T PRK09573 148 LAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKY 194 (279)
T ss_pred HHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHh
Confidence 55554 344566777888999999999999999999999999999863
No 11
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=1.6e-31 Score=245.78 Aligned_cols=195 Identities=34% Similarity=0.399 Sum_probs=159.7
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccc
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~s 161 (291)
+++|+|++++||+++..++++..+|+.++...... . ..++..+++++++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 m~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~-~---~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 2 MTVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS-P---SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch-H---HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 35899999999999999999999999887432211 1 1133445677889999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHH
Q 022848 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (291)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~ 241 (291)
|++|+++++.++.++.++++++++.++ +..+.+++++.+..++||. ++||++++||+.+|...|..+.++
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~-------~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g 147 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLP-------PLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFG 147 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999988887664 4566677777778899984 899999889999988777665555
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 242 GQALFGT-LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 242 g~a~~g~-~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+.+ .++ .....+++++..++++.+++++||++|+|+|+++|++|+|+++
T Consensus 148 ~~~-~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~ 197 (276)
T PRK12882 148 GAA-VGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILI 197 (276)
T ss_pred HHH-hcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHh
Confidence 433 443 3334566778888999999999999999999999999999864
No 12
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.98 E-value=4.6e-31 Score=245.45 Aligned_cols=201 Identities=20% Similarity=0.246 Sum_probs=171.6
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc
Q 022848 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (291)
Q Consensus 79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~ 152 (291)
+..++++.|++.+||+++..++.|+++|.+++ +.++|. . ++..+++..++|+++|.+|||+|++ .|+.
T Consensus 7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 80 (304)
T PRK07419 7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD-----Q-FITFLLAAILILAWENLSNDVFDADTGIDKN 80 (304)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 55678999999999999999999999998865 345542 2 2334457788999999999999998 7874
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848 153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (291)
Q Consensus 153 n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~ 232 (291)
+++ ...++..+++++...++.+++++++++.++.... +|..+.+++++.+.+|+||.||+++||+++ ||+++++
T Consensus 81 -~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~l 154 (304)
T PRK07419 81 -KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCFL 154 (304)
T ss_pred -ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHHH
Confidence 222 2445556799999999999999999998887654 577888899999999999999999999996 9999999
Q ss_pred HHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 233 ~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+|.+++.+. ++++|++++..++.++++++.+.++++.||++|+|+|+++|+||+|+++
T Consensus 155 ~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~l 214 (304)
T PRK07419 155 AFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRL 214 (304)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeee
Confidence 9998887765 7889999999999999999999999999999999999999999999985
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=3.9e-31 Score=243.25 Aligned_cols=194 Identities=31% Similarity=0.444 Sum_probs=160.1
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCc
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI 159 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi 159 (291)
|+++++|++++||+++...++++++|++++.. +++ . . ++..++++++.++++|++|||+|+|+|++|+|+||+
T Consensus 1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~--~---~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl 74 (279)
T PRK12884 1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPL--D---E-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPI 74 (279)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCch--H---H-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCC
Confidence 46899999999999999999999999987743 322 1 1 233446778899999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHH
Q 022848 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (291)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~ 239 (291)
++|++|+++++.+++++.++++.++..++ +..+.+++++.+.+++||. ++||++++|++++|+.++..+.
T Consensus 75 ~~G~is~~~a~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~ 144 (279)
T PRK12884 75 PSGRISRREALLLAILLFILGLIAAYLIS-------PLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI 144 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHH
Confidence 99999999999999998888888887664 4566667777788999994 7999998899999988765444
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 240 l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.++.+. +......+++++..++|+.++++.+|++|+|+|+++|+||+|+++
T Consensus 145 ~g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~ 195 (279)
T PRK12884 145 FGGIAV-GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILY 195 (279)
T ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHh
Confidence 444444 444446777888889999999999999999999999999999864
No 14
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.98 E-value=7.1e-31 Score=241.41 Aligned_cols=199 Identities=21% Similarity=0.231 Sum_probs=156.5
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCcc
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP 160 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~ 160 (291)
..++.+++++||.+|+....++++|+..+|. ++|.+. ...+++++ ....+.+.|.+|||+|+|+|++|+|+||++
T Consensus 10 ~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~---~~~l~~~~-~~p~n~~~~giND~fD~eiDa~Npr~~~i~ 85 (292)
T PRK13595 10 LPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPG---VLPLLLYL-TLPFNLLIYGLNDLADRETDAASPRKGGWQ 85 (292)
T ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhH---HHHHHHHH-HHHHHHHHHHHHhhhhhhhhccCCCCCCCC
Confidence 5678899999999999999999999987764 565211 12222222 344677999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHH
Q 022848 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (291)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l 240 (291)
+|++|+++++.+...+.+.++.++.++.... +|..+.+.+++.+++++||+||+|+|++++++++.. ..++ +|+.
T Consensus 86 ~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p~~ 160 (292)
T PRK13595 86 GARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-LPLA 160 (292)
T ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-HHHH
Confidence 9999999999877777666655555444432 466777777888999999999999999999988876 3343 5877
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 241 ~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+.++.|+...... .+..++|..++++.++++|+|+||+.|+||+|+++
T Consensus 161 ~~~~~~g~~~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~l 209 (292)
T PRK13595 161 LPALALGAPVPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTL 209 (292)
T ss_pred HHHHHcCCcchHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHh
Confidence 77777776543322 34556788999999999999999999999999864
No 15
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=7.4e-31 Score=241.41 Aligned_cols=192 Identities=27% Similarity=0.410 Sum_probs=156.0
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccc
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a-g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~s 161 (291)
++|+|++++||+++....++.++|+.++ +..+. . ..++..+++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~-~----~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP-I----KTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc-H----HHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 5789999999999999999999998876 33321 1 1122333456678899999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHH
Q 022848 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (291)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~ 241 (291)
|++++++++.++.++.++++.+++.++ +..+.+++++.+.+++|+. ++|+++++||+++|...|..|+.+
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~-------~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g 146 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLIN-------IEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG 146 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence 999999999999888888887776654 4456666777788999995 799988889999999998888755
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 242 g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+.+ .++++...++. ...+++..++++.||++|+|+|+++|++|+|+++
T Consensus 147 ~~a-~~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~ 194 (277)
T PRK12883 147 AIA-VGRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIII 194 (277)
T ss_pred HHH-hccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHh
Confidence 544 47777665443 3467788899999999999999999999999864
No 16
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.97 E-value=9e-31 Score=241.48 Aligned_cols=192 Identities=25% Similarity=0.237 Sum_probs=158.8
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a--g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP 158 (291)
++|+|++++||++....+..++.|+.++ +.+++. . ++..+++++++++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP 74 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK-----T-LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP 74 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence 4789999999999999988888898876 333431 1 3334457788999999999999999999994 8999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (291)
Q Consensus 159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp 238 (291)
+++|++|+++++.+++++.++++.++..++ +....++.++.++.+.|+ .+||++++++++.|+.++..+
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l~-------~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~ 143 (282)
T TIGR01475 75 LVSGLISKKEARTMIILSLALFLSASYFLN-------PLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP 143 (282)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence 999999999999988877766666666553 445556666667788998 389999999999999887666
Q ss_pred HHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 239 ~l~g~a~~g~~~--~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+.++.++.|+++ ...++++++.++|+.+++++|+++|+|+|+++|++|+|+++
T Consensus 144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~ 198 (282)
T TIGR01475 144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARF 198 (282)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHh
Confidence 666678888888 77788899999999999999999999999999999999864
No 17
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.6e-30 Score=240.81 Aligned_cols=196 Identities=20% Similarity=0.163 Sum_probs=161.3
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-----NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag-----~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~- 154 (291)
+.++|+|++++||++....+..+++|+.++. ...++. ..++..+++++++.+++|++|||+|+|+|++|+
T Consensus 5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~----~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF----KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 3579999999999999999998888887653 111211 123344466778999999999999999999998
Q ss_pred -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHH
Q 022848 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS 233 (291)
Q Consensus 155 -p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~ 233 (291)
++||+++|++|+++++.+++++.++++.+++.+ |+..+.+++...+....|+. +||++.+++++.|+.
T Consensus 81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~g~~ 149 (291)
T PRK12874 81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYSY----FKRFSSLAHLVLGLS 149 (291)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHhh----hcccccccHHHHHHH
Confidence 799999999999999998888887776666554 34455566666667889993 999999999999988
Q ss_pred HhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 234 ~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
++..|+.++.+++|+++...+++++..++|+.++++.++++|+|+|+++|++|+|+++
T Consensus 150 ~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~ 207 (291)
T PRK12874 150 LGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKF 207 (291)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHh
Confidence 8766666667788899988888889999999999999999999999999999999864
No 18
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=1.6e-30 Score=239.98 Aligned_cols=193 Identities=18% Similarity=0.181 Sum_probs=162.9
Q ss_pred CccchHHHHHHHHHHHHhh---cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCC--CCCCcccccc
Q 022848 92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAINE--PYRPIPSGAI 164 (291)
Q Consensus 92 RP~~~~~~~~~~~~G~~~a---g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~n~--p~RPi~sG~i 164 (291)
||++++.++.|+++|.+++ +.++|. . ++..+++..++|.++|.+|||+|++ .|+.++ |.|++++|.+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~-----~-~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i 74 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLHAFVWL-----V-ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI 74 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence 8999999999999998875 344442 2 2333456788999999999999996 465443 7899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---hhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHH
Q 022848 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (291)
Q Consensus 165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~ 241 (291)
++++++..++.+++++++++.++.+..++. -+..+.+++++.+.+|+||.||+++||+++ ||+++++.+|.+++++
T Consensus 75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 75 TPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHHHHH
Confidence 999999999999999999998887655310 014567788888999999999999999997 9999999999887776
Q ss_pred H-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 242 G-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 242 g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
. +.++|++++..++.+++.++++.++++.||++|+|+|+++|+||+|+++
T Consensus 154 ~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~l 204 (284)
T TIGR00751 154 TQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRL 204 (284)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhc
Confidence 5 6789999999888899999999999999999999999999999999985
No 19
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.4e-30 Score=240.24 Aligned_cols=194 Identities=16% Similarity=0.034 Sum_probs=158.2
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCcc
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIP 160 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~ 160 (291)
++|+|++++||++....+..+++|+.++.+..++... ++..+++++++.+++|++||++|+|+|++|+ ++||++
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~~----l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp 77 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPIK----ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV 77 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence 5899999999999999999999999876332222111 2233446778999999999999999999996 799999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHH
Q 022848 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (291)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l 240 (291)
+|++|++|++.+..++.++++.+.+.+ ||..+.++.+...+...|+ .+||+++++++.+|+.++.-|+.
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~l~ 146 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGVLA 146 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHHHH
Confidence 999999999999999888887776665 4556666666555555665 59999999999999999865555
Q ss_pred HHHHhhCCCCH--HHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 241 AGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 241 ~g~a~~g~~~~--~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
++.++.|++++ ..+++.+..++|+.+.+++++++|+|+|++.|+||+|+++
T Consensus 147 g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~f 199 (286)
T PRK12895 147 GYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTY 199 (286)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHH
Confidence 66777888764 3456788999999999999999999999999999999864
No 20
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3.4e-30 Score=238.72 Aligned_cols=195 Identities=25% Similarity=0.170 Sum_probs=158.3
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCc
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI 159 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi 159 (291)
.++|+|+|++||++....+++.+.|+.++....++. ..++..+++.+++++++|++|||+|+|+|++|+ ++||+
T Consensus 6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~----~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL 81 (291)
T PRK12886 6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGA----SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAI 81 (291)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCC
Confidence 579999999999999999998999998763222211 123344567788999999999999999999998 78999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHH
Q 022848 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (291)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~ 239 (291)
++|++|+++++.+...+.++++.+...+ ||..+.+++++.+..+.|+. +||++.+++++.|++++..|+
T Consensus 82 ~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~~----~Kr~t~~~~~~~g~~~~~~~l 150 (291)
T PRK12886 82 PAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYSY----CKRFTALAHVVLGFCLALAPL 150 (291)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh----hhccccccHHHHHHHHHHHHH
Confidence 9999999999887555444444333333 45566677667777889993 899999999999988776665
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 240 l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.++++++|++++..++++++.++|+.++++.++++|+|+|+++|++|+|+++
T Consensus 151 ~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~ 202 (291)
T PRK12886 151 GAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKL 202 (291)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhc
Confidence 5567888999998899999999999999999999999999999999999864
No 21
>PLN02922 prenyltransferase
Probab=99.97 E-value=3.1e-30 Score=241.04 Aligned_cols=202 Identities=22% Similarity=0.286 Sum_probs=162.0
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc
Q 022848 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (291)
Q Consensus 79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~ 152 (291)
++.+++|.|++++||++++.+++|+++|.+++ +.++|. . ++..+++.+++|.++|.+|||+|++ .|+.
T Consensus 10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 83 (315)
T PLN02922 10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR-----R-YGTLLLSSVLVITWLNLSNDAYDADTGVDKN 83 (315)
T ss_pred CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHhhhhHhccCcCcc
Confidence 45688999999999999999999999998765 445552 2 2334456788999999999999987 6875
Q ss_pred CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848 153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (291)
Q Consensus 153 n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~ 232 (291)
++..+.-..| ++++++..++.+++++++ +.++..+. ..+|.++.+++++++.+|+||.||+++||+++ ||+++++
T Consensus 84 ~~~~~~~~~~--s~~~v~~~~~~~~~la~~-g~~ll~~~-~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i 158 (315)
T PLN02922 84 KKESVVNLVG--SRRGVLAAAIGCLALGAA-GLVWASLV-AGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFA 158 (315)
T ss_pred cCCCCCCccc--CHHHHHHHHHHHHHHHHH-HHHHHHHH-ccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHH
Confidence 5422222234 999999988888888874 44333221 02467888899999999999999999999997 9999999
Q ss_pred HHhHHHHHHH-HHhhC----------CCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 233 SYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 233 ~~g~lp~l~g-~a~~g----------~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+|.+++.+. +.++| .+++..++.++++++++.+++++||++|+|+|+++|+||+||++
T Consensus 159 ~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~l 228 (315)
T PLN02922 159 AFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRL 228 (315)
T ss_pred HHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEE
Confidence 9988877655 45666 35677888999999999999999999999999999999999985
No 22
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=2.3e-30 Score=240.46 Aligned_cols=200 Identities=23% Similarity=0.274 Sum_probs=162.4
Q ss_pred cccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 78 ~~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
+..+.++|+|++++||+++...++++++|++++....++.. .++..+++++++++++|++|||+|+|+|++|+ |
T Consensus 4 ~~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~----~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~ 79 (296)
T PRK04375 4 SSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL----LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTK 79 (296)
T ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccC
Confidence 35567899999999999999999999999988743222211 23344567788999999999999999999988 7
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH-hhhcccCCCcCcccccchhhHHHHHHH
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASY 234 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~-~~~~YS~pPlrlKr~~~~g~l~~g~~~ 234 (291)
+||+++|++|+++++.++.++.++++++++.+. |+....+.+++.+ ..++||. ++||+++ +|..++...
T Consensus 80 ~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~~ 149 (296)
T PRK04375 80 NRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGAA 149 (296)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHHH
Confidence 999999999999999999999988888875542 2334444444433 4668984 7999996 688887777
Q ss_pred hHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 235 ISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 235 g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+.+|++.| ++++|++++..+++++..++|+.+.+..+.++|.|+|+++|+||+|+++
T Consensus 150 g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~ 207 (296)
T PRK04375 150 GAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVK 207 (296)
T ss_pred HHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceee
Confidence 76776665 5678999988888999999999999999999999999999999999864
No 23
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=3.6e-30 Score=237.87 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=160.9
Q ss_pred hhHHHHHhhhCccc---hHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 82 NKWKIRLQLTKPVT---WPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 82 ~~l~~~l~l~RP~~---~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
+++++|++++||+. ...+++|++.|+.++.. ..+. . ..++..+++++++++++|++|||+|+|.|++|+ +
T Consensus 5 ~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~---~-~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 80 (285)
T PRK12847 5 MKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD---I-SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTK 80 (285)
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCc---H-HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCccc
Confidence 57999999888875 44677889999887632 1121 1 123344556788999999999999999999876 6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|+++++.++.++.++++.+.+.+ |+..+.+++++.+..++||. .||+..+++++.|+.++
T Consensus 81 ~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~ 149 (285)
T PRK12847 81 NRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYPL----MKRFFYWPQLFLGFTFN 149 (285)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhccc----cccCCcccHHHHHHHHH
Confidence 89999999999999999988888888777655 35577788888888899983 89988889999998887
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
..++.++.+++|++++..++++++.++|+.+++++++++|+|+|+++|++|+|+++
T Consensus 150 ~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~ 205 (285)
T PRK12847 150 MGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYF 205 (285)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHh
Confidence 65555667888999999999999999999999999999999999999999999864
No 24
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4e-30 Score=238.82 Aligned_cols=196 Identities=20% Similarity=0.140 Sum_probs=155.9
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP 158 (291)
+.++++|++++||++....+++.++|+.++....++.. .++.++++.+++++++|++|||+|+|+|++|+ ++||
T Consensus 12 ~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~----~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RP 87 (300)
T PRK13106 12 RSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS----TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRP 87 (300)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCC
Confidence 45899999999999999999989999987733222211 23344567788999999999999999999996 7999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (291)
Q Consensus 159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp 238 (291)
+++|++|++|++.+..++.++++.++..+ |+..+.+..++.++.+.|+ .+||+++++|+.+|++++..+
T Consensus 88 l~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~ 156 (300)
T PRK13106 88 LVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGLAV 156 (300)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHH
Confidence 99999999999988766666665555544 3455666666666677898 389999999999999998877
Q ss_pred HHHHHHhhCCCC--------HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 239 WWAGQALFGTLT--------PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 239 ~l~g~a~~g~~~--------~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+.++.++.|... ...+++.+..++|+.+++++|+++|+|+|++.|+||+|+++
T Consensus 157 ~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~ 217 (300)
T PRK13106 157 FSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVL 217 (300)
T ss_pred HHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHH
Confidence 777677777542 23455666788999999999999999999999999999864
No 25
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=5.4e-30 Score=236.54 Aligned_cols=192 Identities=23% Similarity=0.191 Sum_probs=157.4
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~a-----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
++|+|+++.||++......-++.|+..+ +.+++ . .++..+++.+++++++|++|||+|+|+|++|+ +
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~----~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~ 74 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHW--A----DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTA 74 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--H----HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence 4789999999999988666655565433 33333 1 13334557788999999999999999999998 7
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|+++++.+++.+..+++.++..+ ||..+.++.++.+..+.|+ ..||+.+++++..|++++
T Consensus 75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~ 143 (284)
T PRK12888 75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA 143 (284)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence 99999999999999998887776666666554 3555666666666778897 489999999999999887
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
..|+.++++++|++++..++++++.++|+.+++++|+++|+|+|+++|+||+|+++
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~ 199 (284)
T PRK12888 144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARF 199 (284)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhh
Confidence 76776777888999998999999999999999999999999999999999999874
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=233.88 Aligned_cols=194 Identities=23% Similarity=0.304 Sum_probs=158.9
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCcc
Q 022848 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIP 160 (291)
Q Consensus 83 ~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~ 160 (291)
++|+|+|++||++.....++++.|+.+++....+.. .++..++++++.++++|++|||+|+|+|++|+ |+||++
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~----~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~ 76 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL----PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTP 76 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcC
Confidence 578999999999999999999999988742222111 13344567788999999999999999999988 799999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHH-HHhhhCCchhHHH-HHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848 161 SGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIF-WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (291)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~-l~~~~g~~~p~~~-~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp 238 (291)
+|++|+++++.+++++.++++.++++ ++ |... .+.+...+..+.||. ++||++++ |..++...|.+|
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~ 145 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGTALGFLLLG-------PLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGNAA 145 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHHHH
Confidence 99999999999999998888888876 43 4332 334444567789994 79999984 777777777777
Q ss_pred HHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 239 WWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 239 ~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
++++ ++++|++++..++++++.++|+.++...++++|.|+|+++|+||+|+++
T Consensus 146 ~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~ 199 (279)
T PRK12869 146 ALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVV 199 (279)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceee
Confidence 7766 5678999998999999999999999999999999999999999999874
No 27
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=5.7e-30 Score=237.12 Aligned_cols=196 Identities=22% Similarity=0.262 Sum_probs=160.5
Q ss_pred chhHHHHHhhhCccc---hHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 81 TNKWKIRLQLTKPVT---WPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~---~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
+.++++|++++||+. ....++|+++|+.++....++. ..++..+++.+++++++|++|||+|+|+|++|+ +
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~----~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~ 81 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPL----PLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTR 81 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence 468999999987766 4456678999988763222221 123344456778999999999999999998766 4
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|++|++.++.++.++++.+++.++ +..+.+++++.+..++|+. .||+..+++++.|+.++
T Consensus 82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~-------~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~ 150 (290)
T PRK12870 82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLN-------PLSFWLCVAAVPVIFLYPL----AKRVFPVPQLVLAIAWG 150 (290)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHhhh----hhhccccceeeehHHHH
Confidence 899999999999999999999988888877663 5566777777778889983 89988889999998887
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
..+..++.+++|++++..+++++..++|+.+++++++++|+|+|+++|++|+|+++
T Consensus 151 ~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~ 206 (290)
T PRK12870 151 FAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFF 206 (290)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHh
Confidence 65555557789999988888999999999999999999999999999999999864
No 28
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=237.22 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=165.1
Q ss_pred cchhHHHHHhhh---CccchHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhh
Q 022848 80 ETNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNF-----HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDA 151 (291)
Q Consensus 80 ~~~~l~~~l~l~---RP~~~~~~~~~~~~G~~~ag~~-----~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~ 151 (291)
.+.++++|+|++ ||+.....++|+++|++++... .+ ++.. ++..+++++++++++|++|||+|+|+|+
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~---~~~~-~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~ 101 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLL---LLWH-LFLFFVGAIAMRGAGCTYNDIVDRDIDA 101 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCC---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 447999999999 9999999999999999876321 22 1122 3344567889999999999999999999
Q ss_pred cCC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHH
Q 022848 152 INE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA 229 (291)
Q Consensus 152 ~n~--p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~ 229 (291)
+++ ++||+++|++|+++++.++.++.++++.+.+.+ ||..+.+++++.+..+.|+ .+||+..++++.
T Consensus 102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~ 170 (314)
T PRK12878 102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFF 170 (314)
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHH
Confidence 877 689999999999999998888888887777654 3556778888888899997 399988888888
Q ss_pred HHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 230 LGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 230 ~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.|+.++..|+.++++++|++++..+++.+..++|+.+.+.+++++|+|+|+++|++|+|+++
T Consensus 171 ~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~ 232 (314)
T PRK12878 171 LGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLF 232 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHh
Confidence 88877665666667889999988888888999999999999999999999999999999874
No 29
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.97 E-value=1.4e-29 Score=233.63 Aligned_cols=196 Identities=23% Similarity=0.296 Sum_probs=159.6
Q ss_pred chhHHHHHhhhC---ccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 81 TNKWKIRLQLTK---PVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 81 ~~~l~~~l~l~R---P~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
++++++|++++| |......++|+++|+.++....++. ..++..+++.+++++++|++|||+|+|+|++|+ +
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~----~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDL----WVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 357999999997 5556677788888988763222211 113334456678999999999999999999876 5
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|+++++.++.++.++++++++.+ |+..+.+++++.+..++|+ ..||+..++++..|+.++
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~g 146 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAFG 146 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHHH
Confidence 89999999999999999999998888776655 3556677777777888995 388888889999888887
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
..+..++.++.|+++...+++++..++|+...++.++++|+|+|+++|++|+|+++
T Consensus 147 ~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~ 202 (282)
T PRK12848 147 WGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILF 202 (282)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHh
Confidence 65555667788999988899999999999999999999999999999999999863
No 30
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.97 E-value=3.9e-29 Score=229.13 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=170.7
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh---c-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc
Q 022848 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (291)
Q Consensus 79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~a---g-~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~ 152 (291)
..+.+.+.|++++||++++.++.|+++|.+.+ + .++| .. .+.++++..+++..+|..|||+|++ .|.+
T Consensus 3 ~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~-~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~ 76 (303)
T COG1575 3 QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LV-ALLALIAAILLQILVNLANDYFDYKKGTDTH 76 (303)
T ss_pred cccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HH-HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC
Confidence 34567799999999999999999999998865 2 3443 22 3444566788999999999999997 6753
Q ss_pred ----CCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhH
Q 022848 153 ----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF 228 (291)
Q Consensus 153 ----n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l 228 (291)
.+.++-+....++++..+...+.++..+++++..+.... +|.++.+++++.+++|+||.+|++++|.|+ ||+
T Consensus 77 g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi 152 (303)
T COG1575 77 GPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEI 152 (303)
T ss_pred CCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHH
Confidence 124556667788888888888888887877777665553 577888999999999999999999999997 999
Q ss_pred HHHHHHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 229 ALGASYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 229 ~~g~~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+++++|.+.+++. |.+++++++..++.++++++.+..++..||+||+|+|+++|++|+||++
T Consensus 153 ~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrL 216 (303)
T COG1575 153 FVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRL 216 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeee
Confidence 99999998877665 7889999999999999999999999999999999999999999999985
No 31
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.97 E-value=3.9e-29 Score=230.82 Aligned_cols=193 Identities=23% Similarity=0.259 Sum_probs=162.1
Q ss_pred HHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCCCCCCcc
Q 022848 87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAINEPYRPIP 160 (291)
Q Consensus 87 ~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~--~D~~n~p~RPi~ 160 (291)
|++.+||++++.+++|+++|.+++ +.++|. ..++ .+++..++|.++|.+|||+|++ .|+.+.. ...
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~-----~~ll-~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~--~~~ 73 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD-----RFAL-FLIAAILILAWINLTNDVFDSDTGIDRFKLH--SIV 73 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH-----HHHH-HHHHHHHHHHHHHHHHhHHHHhcCCCccccC--Ccc
Confidence 789999999999999999998875 345542 2223 3456788999999999999998 4875331 122
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHH
Q 022848 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (291)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l 240 (291)
++..+++++...+.++++++++++.++.... +|..+.+++++++.+|+||.||+++||+++ ||+++++.+|.++++
T Consensus 74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~ 149 (285)
T TIGR02235 74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA 149 (285)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence 3334678998888889889998888887664 467788889999999999999999999997 999999999988877
Q ss_pred HH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 241 AG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 241 ~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+. +.++|++++..++.++++++.+.++++.||++|+|+|+++|+||++|++
T Consensus 150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~l 201 (285)
T TIGR02235 150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRL 201 (285)
T ss_pred HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceehee
Confidence 65 7889999999999999999999999999999999999999999999985
No 32
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.97 E-value=5.1e-29 Score=229.85 Aligned_cols=192 Identities=23% Similarity=0.288 Sum_probs=156.8
Q ss_pred HHHhhhCccchHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCcccc
Q 022848 86 IRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSG 162 (291)
Q Consensus 86 ~~l~l~RP~~~~~~~~~~~~G~~~ag~~-~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~sG 162 (291)
+..++.||..+...++|.+.|+.++... ... +. ..++.++++..+.++++|++|||+|+|+|++|+ ++||+++|
T Consensus 6 ~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~-~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG 82 (281)
T TIGR01474 6 KLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PL-YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASG 82 (281)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHhcccCCC--cH-HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCC
Confidence 4455567888889999999998876321 110 11 123344456678999999999999999999776 68999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHH
Q 022848 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG 242 (291)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g 242 (291)
++|+++++.++.++.++++.+++.+ ||..+.+++++.++.+.|+ .+||+++++++..|+.++..|+.++
T Consensus 83 ~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 83 AVSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHHHHHH
Confidence 9999999999988888888877654 3567778888888899998 3999999999999988876666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 243 ~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
++++|++++..+++.+..++|+.+++.+++++|+|+|+++|+||+|+++
T Consensus 152 ~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~ 200 (281)
T TIGR01474 152 AAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRF 200 (281)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHh
Confidence 7888999988887888999999999999999999999999999999864
No 33
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=1.2e-28 Score=229.70 Aligned_cols=197 Identities=21% Similarity=0.205 Sum_probs=157.1
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP 158 (291)
+.++|+|++++||+++...++++++|+.++...+++. . .++..+++..+.++++|++|||+|+|+|++|+ ++||
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~---~-~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP 85 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDP---V-LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV 85 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCH---H-HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence 4678999999999999999999999998863222221 1 13334456778999999999999999999876 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH-HhhhcccCCCcCcccccchhhHHHHHHHhHH
Q 022848 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGS-LLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (291)
Q Consensus 159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~-~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~l 237 (291)
+++|++|+++++.+++++.++++.++..+. |+....+..++. +..++||. ++||++++++++.|+.. .+
T Consensus 86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~g-a~ 155 (306)
T PRK13362 86 TVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLSG-AM 155 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHHH-HH
Confidence 999999999999999988888887664431 344444444443 34678983 69999998888766555 45
Q ss_pred HHHH-HHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 238 PWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 238 p~l~-g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
|++. +.+++|++++..+++++.+++|+.++....+++|.|+|+++|++|+|++.
T Consensus 156 p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~ 210 (306)
T PRK13362 156 PPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVAR 210 (306)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceec
Confidence 5554 46788899999999999999999999999999999999999999999863
No 34
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.96 E-value=7.7e-29 Score=229.36 Aligned_cols=194 Identities=29% Similarity=0.370 Sum_probs=166.1
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCC--CCC
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRP 158 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag-~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p--~RP 158 (291)
..++.++++.||.++.+..++.++|...+. +++. +..++.+++++++..+++|++||++|+|+|++|+| +||
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP 85 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP 85 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence 456777888888889999999999988764 3221 23345555677889999999999999999999998 999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHH
Q 022848 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (291)
Q Consensus 159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp 238 (291)
+++|++|+++++.+..++.++++++++.++ +..+.+.+++.++.+.|. ++||.++++++.+|..++..+
T Consensus 86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~-------~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~ 154 (289)
T COG0382 86 LPSGRVSVKEALLLAILLLLLGLALALLLN-------PLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGA 154 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999998875 445777778888999993 799999999999999998777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 239 ~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
..++.++.|+.....+++.+..++|+.++++.++++|+|+|++.|++|+|+.+
T Consensus 155 ~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~ 207 (289)
T COG0382 155 LAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLF 207 (289)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHh
Confidence 77777778888888899999999999999999999999999999999998753
No 35
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.96 E-value=1.9e-28 Score=226.72 Aligned_cols=195 Identities=24% Similarity=0.258 Sum_probs=157.8
Q ss_pred hhHHHHHhhhC---ccchHHHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--
Q 022848 82 NKWKIRLQLTK---PVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (291)
Q Consensus 82 ~~l~~~l~l~R---P~~~~~~~~~~~~G~~~a--g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~-- 154 (291)
++++.|+|++| |.......+|++.|..++ ....++. ..++.++++.+++.+++|++||++|+|+|++|+
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~----~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDL----KMLALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcH----HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 57888888886 666778888888877654 2211211 123344567788999999999999999999986
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHH
Q 022848 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (291)
Q Consensus 155 p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~ 234 (291)
++||+++|++|+++++.+..++.++++++.+.++ +..+.+++++.++.++|+ .+||++++++++.|+++
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~-------~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~ 148 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLN-------NYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGLTF 148 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHHHH
Confidence 6999999999999999998888888888777653 456777777778888998 39999999999999888
Q ss_pred hHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 235 ISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 235 g~lp~l~g~a~~g~~~~~~~l-l~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+..|+.++.++.|++++..++ +.+..++|+.+.++++.++|+|+|+++|++|+|+++
T Consensus 149 ~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~ 206 (289)
T PLN02809 149 NWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRF 206 (289)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhh
Confidence 766666677888988876654 777788899999999999999999999999999874
No 36
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.96 E-value=1.7e-28 Score=226.19 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=155.8
Q ss_pred HHHHhhhCccchHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCccc
Q 022848 85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPS 161 (291)
Q Consensus 85 ~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~-~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~s 161 (291)
|+|++++||+++...++++++|+++++... ++. ..++.++++++++++++|++|||+|+|+|++|+ ++||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~----~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNP----PLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999998874321 221 123444567788999999999999999999987 7999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHH-HHhhhCCchhHHHHHHHHHHHh-hhcccCCCcCcccccchhhHHHHHHHhHHHH
Q 022848 162 GAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (291)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~-l~~~~g~~~p~~~~l~~~~~~~-~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~ 239 (291)
|++|+++++.+++++.++++.+... + |+....+++++.++ .++||. .+||++++ +..+|...|.+|+
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~-------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~ 145 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFV-------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVPP 145 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHHH
Confidence 9999999999999988888774433 3 35556666666654 789994 59999986 5556666777777
Q ss_pred HHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 240 WAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 240 l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+++ ++++|++++..+++++..++|+........++|.|+|+++|+||+|+++
T Consensus 146 l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~ 198 (280)
T TIGR01473 146 LIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVK 198 (280)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCccc
Confidence 666 5677999998888899999999998888889999999999999999874
No 37
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=5e-28 Score=222.78 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=146.3
Q ss_pred HHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccccc
Q 022848 84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGA 163 (291)
Q Consensus 84 l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~ 163 (291)
+|.+++++||.+|+...+|+.+|+.++++..+. .++...+++ ....+.+.|.+|||+|+|.|+.|+++... .|.
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~--~~l~~~l~~---~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~ 74 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDW--LFVVGTVFF---LIPYNLAMYGINDVFDYESDLRNPRKGGV-EGA 74 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCCCCCh--HHHHHHHHH---HHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCc
Confidence 378999999999999999999999988543321 112212221 23344455667999999999999864433 588
Q ss_pred cCHHHHHHHHHHHHHHHHH-HHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHH
Q 022848 164 ISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG 242 (291)
Q Consensus 164 is~~~a~~~~~~l~~l~l~-l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g 242 (291)
++++++....+.+.++++. +++.+... .+|.++.++.++++.++.||.||.|+|++++.+++..++.+....+++.
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~ 151 (282)
T PRK13105 75 VLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGL 151 (282)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 9999986655555555444 33333221 2467778888899999999999999999999777655555533323333
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 243 QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 243 ~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+...+.+++..++++..+++|..+++++||+||+|+||+.|+||+|+++
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~l 200 (282)
T PRK13105 152 VLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVL 200 (282)
T ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHh
Confidence 4456677877888889999999999999999999999999999999875
No 38
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.3e-27 Score=221.05 Aligned_cols=200 Identities=22% Similarity=0.153 Sum_probs=159.5
Q ss_pred chhHHHHHhh---hCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 81 TNKWKIRLQL---TKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 81 ~~~l~~~l~l---~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
++++++|+|+ .||......++|.+.|+.++....+. .. .++..++++.++.+++|++||+.|+|+|++|+ +
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~---~~-~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS---LL-LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 3579999999 55666678888889997776322221 11 23344567788999999999999999999998 6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|+++++.++.++.++++.+.+.++.. .|+..+.+++++.+...+|+. +||+..+.+++.|++.+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~---~n~l~~~l~~~~~~~~~~Y~~----~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQP---SRNLCLSLAFLALPPILIYPS----AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHH----HHhccccchHHHHHHHH
Confidence 99999999999999999998888888777665321 156677777777777889993 99999999999988877
Q ss_pred HHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 236 SLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 236 ~lp~l~g~a~~g~~~~~--~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.-|+.++.+++|++++. .+++.+..++|+.+.+++++++|+|+|+++|++|+|+++
T Consensus 153 ~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~ 210 (294)
T PRK12873 153 FAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSL 210 (294)
T ss_pred hHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhc
Confidence 65566667888998863 334457889999999999999999999999999999864
No 39
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1e-27 Score=221.85 Aligned_cols=196 Identities=21% Similarity=0.124 Sum_probs=155.8
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhc-------C-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------N-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag-------~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n 153 (291)
.++|.|.++.|-.+.+..+.=+..|+.++. + ++++ + +..++.+.++.+++.+++|++|||+|+|+|++|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--G-IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--C-HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 468999999999998877776777877653 2 1111 0 122344455667899999999999999999999
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHH
Q 022848 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (291)
Q Consensus 154 ~--p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g 231 (291)
+ ++||+++|++|+++++.+...+.++++.+...+ ||..+.++.++.++.++|+ .+||++++++++.|
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG 147 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG 147 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence 9 799999999999999998876666666555554 4667777878888888998 49999999999999
Q ss_pred HHHhHHHHHHHHHhhCC-CCH----HHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 232 ~~~g~lp~l~g~a~~g~-~~~----~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
++++..|..++.++.|+ .++ ..+++++..++|+.+++++++++|+|+|++.|+||+|+++
T Consensus 148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~f 212 (300)
T PRK12876 148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARF 212 (300)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHH
Confidence 99887777676777776 555 3345667788888899999999999999999999999863
No 40
>PLN02878 homogentisate phytyltransferase
Probab=99.95 E-value=1.2e-27 Score=217.85 Aligned_cols=166 Identities=25% Similarity=0.452 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 022848 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199 (291)
Q Consensus 120 ~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~ 199 (291)
++..++..+++..+++.+...+|||+|+|+|++|||+||+++|++|+++++...+.+.++|+.+++.++.+ + .+
T Consensus 21 ~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~-----~-l~ 94 (280)
T PLN02878 21 FFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSW-----P-LF 94 (280)
T ss_pred HHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChH-----H-HH
Confidence 34455666777888999999999999999999999999999999999999999999999999998887532 2 22
Q ss_pred HHHHHHHHhhhcccC--CCcCcccccchhhHHHHHHHhHH---HHHHH--HHhhC---CCCHHHHHHHHHHHHHHHHHHH
Q 022848 200 WLAVGGSLLSYIYSA--PPLKLKQNGWIGNFALGASYISL---PWWAG--QALFG---TLTPDIIVLTLLYSIAGLGIAI 269 (291)
Q Consensus 200 ~l~~~~~~~~~~YS~--pPlrlKr~~~~g~l~~g~~~g~l---p~l~g--~a~~g---~~~~~~~ll~l~~~l~~~~~~i 269 (291)
.....++++++.||. ||+|+|++++++.....++-+.. ++..+ ..+.| .+++..++..+.+++...++++
T Consensus 95 ~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i 174 (280)
T PLN02878 95 WALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIAL 174 (280)
T ss_pred HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHH
Confidence 333455588999996 99999999988765443222222 33222 23334 2344555556677788889999
Q ss_pred HhhcCChHHHHHcCCccceeeC
Q 022848 270 VNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 270 ~~d~~DiegDr~~G~rTlpV~l 291 (291)
.||++|+|||++.|+||+|+++
T Consensus 175 ~KDi~DieGD~~~Gi~Tlpv~l 196 (280)
T PLN02878 175 FKDIPDVEGDRIFGIRSFSVRL 196 (280)
T ss_pred HhhCcCchhHHHCCCceechhh
Confidence 9999999999999999999974
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=9.8e-27 Score=216.04 Aligned_cols=195 Identities=21% Similarity=0.265 Sum_probs=146.7
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC----
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN---- 153 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~a----g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n---- 153 (291)
.++++|++++||+++.....+++.|.+++ |.+++. ..++.+ +++.++..++|++|||+|+|.|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~-----~~~l~~-l~~~l~~~ag~~iND~~D~~~D~~~v~rt 76 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE-----LTIKAA-LIGLFGFEAGFVLNDYVDRKRDRLDVENT 76 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH-----HHHHHH-HHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence 46899999999998888888877887664 444431 112222 3344555677999999999999875
Q ss_pred -----C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCccccc---
Q 022848 154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG--- 223 (291)
Q Consensus 154 -----~--p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~--- 223 (291)
+ ++||+++|++|+++++.+++++.+++++++..+.... .+..+.+++.+.++++.|+ +|++.
T Consensus 77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~-----~~kr~~~~ 148 (297)
T PRK12871 77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQ-----VKKRNQKY 148 (297)
T ss_pred hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-----cccccccc
Confidence 2 5899999999999999999999999988887765432 2345556666777888898 34431
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 224 WIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 224 ~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
..+.+.-++.++. +.+.|++++|+++...++++++.++|+.+++.+||++|+|+|+++|+||+|+++
T Consensus 149 p~~~l~G~~~~~~-~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~ 215 (297)
T PRK12871 149 PVAQLLGRTDFTL-FPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLY 215 (297)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeee
Confidence 2233322234444 555566788999988888889999999999999999999999999999999974
No 42
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.3e-25 Score=207.09 Aligned_cols=198 Identities=21% Similarity=0.262 Sum_probs=125.8
Q ss_pred cchhHHHHHhhhCccchHHHHHHHHHHHHhhcCC---CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCC
Q 022848 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF---HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPY 156 (291)
Q Consensus 80 ~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~---~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~ 156 (291)
....+|.|++++||++|..++.|+++|.+++... .++. ....+++.++ +..+.+.|.+|||+|+|+|+.|+++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~--~~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP--AAVALFAYFL--FPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH--HHHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCc
Confidence 3468899999999999999999999999876321 1221 1111111111 1123345668999999999999865
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhH
Q 022848 157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (291)
Q Consensus 157 RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~ 236 (291)
+. |+...++.......+.+++.+++..+.... ++..+.+.+..++.++.||.||+|+|++++.+..+.|. + .
T Consensus 80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~-~ 151 (282)
T PRK12875 80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-Y-I 151 (282)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-H-H
Confidence 43 221112211111111222222222222111 22223333445688999999999999999854443343 3 4
Q ss_pred HHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 237 LPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 237 lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
+|.+++ ++++|++++..+ .+..++|+.++++.|+++|+|+|+++|+||+|+++
T Consensus 152 ~~~~~~y~~~tg~~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~l 205 (282)
T PRK12875 152 LPGVAAYALVSGSLPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVL 205 (282)
T ss_pred HHHHHHHHHHcCCCcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhc
Confidence 666655 567888876543 33457899999999999999999999999999975
No 43
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.94 E-value=4.7e-26 Score=205.08 Aligned_cols=181 Identities=31% Similarity=0.489 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCCccccccCHHHHHHH
Q 022848 97 PPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQ 172 (291)
Q Consensus 97 ~~~~~~~~~G~~~ag--~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~--n~p~RPi~sG~is~~~a~~~ 172 (291)
...+.+++.|...+. ..++. . +....++.++.+.++|.+|||+|+|+|+. |+|+||+++|+++++++...
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~ 75 (257)
T PF01040_consen 2 PLSFLPVLAGLALASGGPFNWP--I----FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIF 75 (257)
T ss_pred hHHHHHHHHHHHHHHcCCCCHH--H----HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHH
Confidence 456667777755442 23331 1 22222334578999999999999999999 78999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHHhhCCCCHH
Q 022848 173 IWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD 252 (291)
Q Consensus 173 ~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~ 252 (291)
++++.++++++++.. ++..+.+.+++.+.+++|| +|+++||+++++++.++++++..+.+++++..++.+..
T Consensus 76 ~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T PF01040_consen 76 ALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPP 147 (257)
T ss_pred HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHH
Confidence 888888888877443 3556677777777889999 78899999999999999988877777767777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 253 ~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.++.+.+.+++.......+|++|+|+|++.|+||+|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~ 186 (257)
T PF01040_consen 148 PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLL 186 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHH
Confidence 888888888999999999999999999999999999753
No 44
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1.5e-25 Score=206.67 Aligned_cols=198 Identities=22% Similarity=0.159 Sum_probs=152.1
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCCccc
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~s 161 (291)
+.++.++++.|+.+......++.++.....-.++.. ....+++.++.+.++|++|||+|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~- 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI------SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF- 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh------HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH-
Confidence 457899999999999888887766654321122211 1122334567899999999999999999999999988
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCc-CcccccchhhHHHHHHHhHHHHH
Q 022848 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWW 240 (291)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPl-rlKr~~~~g~l~~g~~~g~lp~l 240 (291)
|++++....+.+..+++.++.++.... .+|..+.+++++.+++++||.||. ++|+.+.+||+.+|..+|..|.+
T Consensus 75 ---s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~ 149 (285)
T PRK12872 75 ---SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLI 149 (285)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence 455666666666666666665553221 256677788888888999999875 58999999999999999988887
Q ss_pred HHH-HhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 241 AGQ-ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 241 ~g~-a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.++ ...+.++...++.++..+++.+..++.+|++|+|+|+++|++|+|+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~l 201 (285)
T PRK12872 150 LGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVL 201 (285)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhc
Confidence 764 444456777777888889999999999999999999999999999874
No 45
>PLN02776 prenyltransferase
Probab=99.93 E-value=3.1e-24 Score=201.54 Aligned_cols=184 Identities=21% Similarity=0.184 Sum_probs=150.9
Q ss_pred hhCccchHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCCccccccC
Q 022848 90 LTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS 165 (291)
Q Consensus 90 l~RP~~~~~~~~~~~~G~~~ag~--~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RPi~sG~is 165 (291)
++||+.....+++.+.|+.++.. +++ ..++..++++.++.+++|++||++|+|+|++|+ ++||+++|++|
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~------~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDL------PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence 58999999999999999998743 332 123445567888999999999999999999987 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHh-hhcccCCCcCcccccchhhHHHHHHHhHHHHHHH-H
Q 022848 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG-Q 243 (291)
Q Consensus 166 ~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~-~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g-~ 243 (291)
+++++.+++++.++++.+..+. .|+..+.++++++++ ...|| .+||++++ |.++|...|.+|.++| .
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~------~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~ 143 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYK------TNMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence 9999999998888777554332 145566666665444 56899 39999986 7899999997776655 6
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceee
Q 022848 244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSIL 290 (291)
Q Consensus 244 a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~ 290 (291)
+++|++++..+++++..++|+........+.|.|+|+++|.+.+|+.
T Consensus 144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~ 190 (341)
T PLN02776 144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLA 190 (341)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCcc
Confidence 78899999999999999999998888888889999999999999973
No 46
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3e-25 Score=203.12 Aligned_cols=197 Identities=24% Similarity=0.241 Sum_probs=164.2
Q ss_pred cchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCC
Q 022848 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR 157 (291)
Q Consensus 80 ~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~R 157 (291)
.+.++|+|++++||+.+...+++.+.|+.++.....+ ...++..++++.+..++++++|+|+|+|+|++++ ++|
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~----~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R 89 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSIN----PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR 89 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccccccc----HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence 5689999999999999999999999999988642211 1234555667788999999999999999999998 699
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH-HhhhcccCCCcCcccccchhhHHHHHHHhH
Q 022848 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGS-LLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (291)
Q Consensus 158 Pi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~-~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~ 236 (291)
|+++|+++|++++.++.++.++|+.+.++.. ||....++++++ +...+||. .+||+..+ |+++|...|.
T Consensus 90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~aGa 159 (304)
T COG0109 90 PLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFAGA 159 (304)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecccc
Confidence 9999999999999999999999988885442 455666665554 45779994 89999986 8999988889
Q ss_pred HHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceee
Q 022848 237 LPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSIL 290 (291)
Q Consensus 237 lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~ 290 (291)
+|.+.| .+++|++++..+++++.+|+|+-.....-.++-.|+-+++|+.-+|++
T Consensus 160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv 214 (304)
T COG0109 160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVV 214 (304)
T ss_pred ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCccccc
Confidence 998766 688999999999999999999888777777777777799999988874
No 47
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.89 E-value=7.1e-22 Score=182.79 Aligned_cols=147 Identities=21% Similarity=0.218 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhh
Q 022848 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSY 210 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~ 210 (291)
+.+...++|++|||+|+|+|++|+|+||.+ +++.++.++.+..++|+.+++..+ |. .+++++.+.++
T Consensus 67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g-------~~--ll~ll~~l~g~ 133 (307)
T PRK13591 67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDG-------ML--LLAFLPFITGY 133 (307)
T ss_pred HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHh-------HH--HHHHHHHHHHH
Confidence 345788999999999999999999999986 778888877777777777766544 32 34567788899
Q ss_pred cccCC----Cc--CcccccchhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCC
Q 022848 211 IYSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284 (291)
Q Consensus 211 ~YS~p----Pl--rlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~ 284 (291)
+||.+ |. ++|+++.+||+++|+.+|...++......+.+ .......+..+...++++.+||++|+|+|++.|+
T Consensus 134 lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~ 212 (307)
T PRK13591 134 LYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGI 212 (307)
T ss_pred HhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCC
Confidence 99986 54 88888888999999999875543211112221 1111222223333467788999999999999999
Q ss_pred ccceeeC
Q 022848 285 QVSSILL 291 (291)
Q Consensus 285 rTlpV~l 291 (291)
+|+|+++
T Consensus 213 kTLPV~l 219 (307)
T PRK13591 213 KTLPVSL 219 (307)
T ss_pred eeEEEEE
Confidence 9999974
No 48
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1.5e-21 Score=180.95 Aligned_cols=152 Identities=26% Similarity=0.334 Sum_probs=114.6
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCC
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYR 157 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~-~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n--~p~R 157 (291)
++++++|++++||++|...++.+. +...++. .+.. .... .+..+++..+..+++|++||++|+|+|++| +|+|
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~~~--~~~~-~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLNPG--ALLK-VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcccc--hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 458999999999999999888554 4344333 2211 1112 223334456788999999999999999998 4899
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHH
Q 022848 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (291)
Q Consensus 158 Pi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~l 237 (291)
|+++|++++++++.++.++.++++++++.++ |..+.+.+...+..+.||. ++|++++++++.++++++ +
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~-------~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~-l 152 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLLS-------PKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFV-L 152 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHH-H
Confidence 9999999999999999999988888877654 4445555556677889994 899999999999988875 5
Q ss_pred HHHHHHHhhC
Q 022848 238 PWWAGQALFG 247 (291)
Q Consensus 238 p~l~g~a~~g 247 (291)
++++|.+..+
T Consensus 153 r~~~G~~a~~ 162 (295)
T PRK12324 153 RAIAGGVAIG 162 (295)
T ss_pred HHHHHHHHhC
Confidence 7766655444
No 49
>PRK08238 hypothetical protein; Validated
Probab=99.88 E-value=3e-21 Score=189.79 Aligned_cols=189 Identities=23% Similarity=0.297 Sum_probs=145.7
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--C
Q 022848 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (291)
Q Consensus 79 ~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~-~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p 155 (291)
..+.++++|++++||+.|...++.++ +++.++.+ +. .. +..++..++++.++.+++|++||++|+|+|++|+ +
T Consensus 186 ~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~~~~~--~~-~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~ 261 (479)
T PRK08238 186 PRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQFGDL--QA-LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKR 261 (479)
T ss_pred CCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcccCCh--HH-HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Confidence 44568999999999999998888644 77776554 32 11 2223334455678999999999999999999994 8
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHh
Q 022848 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (291)
Q Consensus 156 ~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g 235 (291)
+||+++|++|+++++.++.+++++++++++.++ |..+.+.+..+++.++|| +++||+++++++++|+++.
T Consensus 262 ~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~-------~~~~~~~~~~~~~~~~Ys---~~lKr~~~~~~~~la~~~~ 331 (479)
T PRK08238 262 RRPFASGALPIPFGLAAAPLLLLAGLALALALG-------PAFLLVLLAYLALTLAYS---LRLKRKVLVDVLTLAALYT 331 (479)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHhh---HHhcCCccccchHHHHHHH
Confidence 999999999999999999999999988887754 444555556667788999 4899999999999998885
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCC
Q 022848 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284 (291)
Q Consensus 236 ~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~ 284 (291)
+++++|.+..+ +++..|++...+ ++.+...+.+...|+++++..|.
T Consensus 332 -lr~~~G~~a~~-~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 332 -LRIIAGAAAIG-VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred -HHHHHHHHHhc-cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence 57666655554 666677665333 34567888999999998888775
No 50
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.86 E-value=4e-21 Score=176.55 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhh
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLS 209 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~ 209 (291)
..++..+++|++|||+|+|+|++|+|+||+|+|++|+++++.+++.+.++++.++... ...+...++.
T Consensus 54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i~~~~i~ 121 (299)
T PRK13592 54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNVGWFLFL 121 (299)
T ss_pred HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 3567889999999999999999999999999999999999998888866666555433 1122233445
Q ss_pred hcc-----cCCCcCcccccchhhHHHHHHHhHHHHHH--------HHHhhCCCCHH--HHHHHHHHHHHHHHHHHHhhcC
Q 022848 210 YIY-----SAPPLKLKQNGWIGNFALGASYISLPWWA--------GQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFK 274 (291)
Q Consensus 210 ~~Y-----S~pPlrlKr~~~~g~l~~g~~~g~lp~l~--------g~a~~g~~~~~--~~ll~l~~~l~~~~~~i~~d~~ 274 (291)
+.| +. ++|+.++.||+.++...+.....+ +....|..... .+.+++..++..+++++.+|++
T Consensus 122 ~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~Kdie 198 (299)
T PRK13592 122 YIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIR 198 (299)
T ss_pred HHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556 74 899999999999998776433111 11122322222 2466778888899999999999
Q ss_pred ChHHHHHcCCccceeeC
Q 022848 275 SVEGDRAMGLQVSSILL 291 (291)
Q Consensus 275 DiegDr~~G~rTlpV~l 291 (291)
| |||++ |.+|+|+.+
T Consensus 199 D-~gd~~-~~~Tlpi~~ 213 (299)
T PRK13592 199 A-PKDET-EYVTYSKLF 213 (299)
T ss_pred C-Ccccc-CCeeechhc
Confidence 9 88885 599999864
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.80 E-value=8.8e-20 Score=163.48 Aligned_cols=199 Identities=23% Similarity=0.261 Sum_probs=152.7
Q ss_pred ccchhHHHHHhhhC---ccchHHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC
Q 022848 79 QETNKWKIRLQLTK---PVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE 154 (291)
Q Consensus 79 ~~~~~l~~~l~l~R---P~~~~~~~~~~~~G~~~ag-~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~ 154 (291)
.++.+|+.|.|++| |.......+|.....+++. .-.++ .+..+-.+-.+.+++.+++|++||.+|+|.|++.+
T Consensus 59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p---~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVe 135 (353)
T KOG1381|consen 59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLP---SIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVE 135 (353)
T ss_pred cCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccc---hhHHHHHhcccHHHhccCCceehhhhhhhhhhhHh
Confidence 45567999999996 6666666677777766542 21121 12222222346788999999999999999999987
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHH
Q 022848 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (291)
Q Consensus 155 --p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~ 232 (291)
+.||+++|.+|+++++.+--+.+.+++++...+ ||....++..++...+.|+. +||..++.+++.|.
T Consensus 136 RtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~ypl----~kr~TY~pq~vLgl 204 (353)
T KOG1381|consen 136 RTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYPL----MKRFTYWPQLVLGL 204 (353)
T ss_pred hhcccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEeeh----hhhcchhHHHHHhh
Confidence 689999999999999987777777776666554 56677788777777888984 99999999999999
Q ss_pred HHhHHHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 233 SYISLPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 233 ~~g~lp~l~g~a~~g~~~~~~-~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
++..-..+++-++.|+.++.. +.+-+--.+|++..+.++..+|.+.|.+.|+++-+.++
T Consensus 205 tfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrf 264 (353)
T KOG1381|consen 205 TFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRF 264 (353)
T ss_pred hcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhc
Confidence 887767777777888877643 33445556799999999999999999999999987664
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.70 E-value=1.9e-18 Score=151.85 Aligned_cols=219 Identities=17% Similarity=0.212 Sum_probs=166.9
Q ss_pred hhhccccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 022848 70 QLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLE-DVAKSIVCMIMSGPCLTGYTQTINDWYDRE 148 (291)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~-~~~~~ll~~lla~~l~~~a~~~iNd~~D~~ 148 (291)
+|-|-...+...++.+.|+-..||+....++.|.++|.+++-+.+|... .....++|. ++...+++++|.+|.|+|..
T Consensus 47 rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a-~avlavh~agnlvntyfdf~ 125 (359)
T KOG4581|consen 47 RLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCA-FAVLAVHCAGNLVNTYFDFI 125 (359)
T ss_pred cccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHH-hhheeeecccchhhhhhhhh
Confidence 6666666666779999999999999999999999999887643333211 112223343 34556899999999999985
Q ss_pred --hhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccCCCcCcccccchh
Q 022848 149 --IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226 (291)
Q Consensus 149 --~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g 226 (291)
+|.+...+|.+++..+.+.++..++..+..+|++.+..+.+..-..---..+++..++.-.+.|+.+ +.+|+..+ |
T Consensus 126 kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg-igfkyial-g 203 (359)
T KOG4581|consen 126 KGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG-IGFKYIAL-G 203 (359)
T ss_pred hccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc-cceEEEec-c
Confidence 7887778999999999999999999999998888776665432000001234455555667899986 68999886 7
Q ss_pred hHHHHHHHhHHHHHHH-HHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHcCCccceeeC
Q 022848 227 NFALGASYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQVSSILL 291 (291)
Q Consensus 227 ~l~~g~~~g~lp~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~G~rTlpV~l 291 (291)
.+++-+.+|-+.++.. ..++|++++..+..++|..+-+-++...||.+|.|+||++|+-|+++.+
T Consensus 204 dliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlaili 269 (359)
T KOG4581|consen 204 DLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILI 269 (359)
T ss_pred CEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEee
Confidence 7776566665555544 4678999988888889999999999999999999999999999999864
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.69 E-value=2.3e-17 Score=151.15 Aligned_cols=189 Identities=20% Similarity=0.247 Sum_probs=146.3
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCC
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~a-g~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n~--p~RP 158 (291)
...+.|+||+||+...+.+++.+.|++++ +.++++ .+++..++..+..++.|.+|++++...|.+++ +.||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~------~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFP------TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccCCCcc------hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 56889999999999999999999999987 556653 35555667788999999999999999999998 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH-hhhcccCCCcCcccccchhhHHHHHHHhHH
Q 022848 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (291)
Q Consensus 159 i~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~-~~~~YS~pPlrlKr~~~~g~l~~g~~~g~l 237 (291)
+++|+++|..++.++.+....|+.+..+ + .||....++...++ ...+|+ .+||..+ .|..+|...|.+
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~-g-----vNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAI 234 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAF-G-----VNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAI 234 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeee-c-----ccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccC
Confidence 9999999999999887776666555433 2 37877777766543 466888 5999987 589999988999
Q ss_pred HHHHH-HHhhCCCCHHHHHHHHHHHHHHHHH--HHHhhcCChHHHHHcCCcccee
Q 022848 238 PWWAG-QALFGTLTPDIIVLTLLYSIAGLGI--AIVNDFKSVEGDRAMGLQVSSI 289 (291)
Q Consensus 238 p~l~g-~a~~g~~~~~~~ll~l~~~l~~~~~--~i~~d~~DiegDr~~G~rTlpV 289 (291)
|.+.| .+..|.+++..|+++...+.|.+-. .+..+++| +-.++|.+-.++
T Consensus 235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~ 287 (409)
T KOG1380|consen 235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAV 287 (409)
T ss_pred CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhch--hhhhccEEEEEe
Confidence 87655 6778999999999988888887643 23333332 225666665543
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=94.36 E-value=0.21 Score=46.91 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=40.7
Q ss_pred HhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHH---HHHHHHHHHhhhCCchhHHHHH-HHHHHHhhhcccC
Q 022848 140 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLA---GLGLAGLLDVWAGHDFPTIFWL-AVGGSLLSYIYSA 214 (291)
Q Consensus 140 ~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l---~l~l~~~l~~~~g~~~p~~~~l-~~~~~~~~~~YS~ 214 (291)
++||+-|.|.|+.+. +.-|+.=|+ +.+..+...+.++ ..+++..+++.. ..|.+.+. .+.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence 789999999999987 444665553 3333333333332 223333334332 23544442 3455667788998
Q ss_pred CC
Q 022848 215 PP 216 (291)
Q Consensus 215 pP 216 (291)
|+
T Consensus 272 ~~ 273 (307)
T PRK13591 272 PF 273 (307)
T ss_pred Cc
Confidence 65
No 55
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=92.86 E-value=1.9 Score=40.00 Aligned_cols=33 Identities=21% Similarity=0.061 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
..+.+.+-.++|++.|+|.|+... +.-|..-|.
T Consensus 168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 345677788999999999999887 666766564
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.63 E-value=2.4 Score=38.90 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAG 180 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l~ 180 (291)
+.....+++||.-|+|.|++++ +.=|..-|+ +.+..+...+.++.
T Consensus 172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~~~ 217 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNLLF 217 (285)
T ss_pred HHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHHHH
Confidence 3455666899999999999976 555665564 44444444444333
No 57
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=92.37 E-value=2.3 Score=39.80 Aligned_cols=41 Identities=15% Similarity=-0.068 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVL 176 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l 176 (291)
+...+....||+-|+|.|+.+. +.-|..-| ++.+.....++
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~~l 235 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHHHH
Confidence 3556677899999999999886 44555445 34444444433
No 58
>PLN00012 chlorophyll synthetase; Provisional
Probab=92.30 E-value=1.6 Score=42.19 Aligned_cols=31 Identities=19% Similarity=0.080 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
+...+....|||-|+|.|+... +.-|..-|.
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 4566778899999999999886 666776664
No 59
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=92.17 E-value=1.4 Score=40.32 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
++.+...+.+||+.|+|.|+.+. +.-|..-|.
T Consensus 165 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 165 FLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 44556678899999999999887 566665554
No 60
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=91.75 E-value=1.7 Score=40.06 Aligned_cols=33 Identities=21% Similarity=-0.011 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.++.+..-..+|++.|+|.|+.+. +.-|..-|.
T Consensus 174 ~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 174 CIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 455677777899999999999887 666666664
No 61
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=91.70 E-value=3.5 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
...+....||+.|+|.|+... +.-|..-|+
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 455668899999999999886 566766664
No 62
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=91.68 E-value=1.9 Score=39.75 Aligned_cols=35 Identities=20% Similarity=0.032 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 129 MSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 129 la~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
++.++.+..-..+|++.|+|.|+... |.-|..-|.
T Consensus 167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 34556677888999999999999886 667777774
No 63
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=91.47 E-value=2.3 Score=39.15 Aligned_cols=33 Identities=21% Similarity=0.020 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.++.+..-..+||..|+|.|+... |.-|..-|.
T Consensus 167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 345566777899999999998876 666776663
No 64
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=91.21 E-value=2.5 Score=40.12 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHH
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLL 177 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~ 177 (291)
..+...+..++||+-|+|.|+... +.-|+.=|+ +.+..++....
T Consensus 189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~---~~a~~i~~~~~ 233 (331)
T PRK12392 189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA---KNTFLVSFIII 233 (331)
T ss_pred HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH---hhHHHHHHHHH
Confidence 345667778899999999999886 455665553 44444444333
No 65
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=91.05 E-value=10 Score=35.17 Aligned_cols=54 Identities=15% Similarity=-0.040 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAGLL 187 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l 187 (291)
..+...+...+|++-|+|.|+..+ +.-|..-| .+.+..++.++.+++.++-+..
T Consensus 174 ~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG---~~~a~~~~~~~~~~a~~~~~~~ 228 (282)
T PRK12875 174 GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLG---ERRTYAYCAACWLLAAAAFAAV 228 (282)
T ss_pred HHHHHHHHHHHHhccCHHHHHHcCCccchhhcc---HhhHHHHHHHHHHHHHHHHHHH
Confidence 446677778999999999999876 44444334 4555555555554444443333
No 66
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.01 E-value=2.8 Score=39.29 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhhchhhhhcCCCCCCc
Q 022848 132 PCLTGYTQTINDWYDREIDAINEPYRPI 159 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~p~RPi 159 (291)
.+..+..+..|+..|.|+|+.|+++.+.
T Consensus 186 gil~~~Il~aNNirDie~D~~~gk~TLa 213 (303)
T COG1575 186 GILIANILLANNLRDIEEDIRNGKYTLA 213 (303)
T ss_pred HHHHHHHHHhcccccchhHHhcCCccee
Confidence 3456778889999999999999876543
No 67
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=90.89 E-value=2.2 Score=39.75 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
..+.+.+-..+|++.|+|.|+... |.-|..-|.
T Consensus 176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 346777788999999999998876 777777665
No 68
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=90.62 E-value=2.9 Score=39.08 Aligned_cols=33 Identities=21% Similarity=0.025 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.++.+..-..+||+.|+|.|+.++ +.-|+.-|+
T Consensus 184 ~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 184 FYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 345677788999999999999987 667777775
No 69
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=89.79 E-value=12 Score=31.98 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---hhHHHHHHHHHHHhhh
Q 022848 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSY 210 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~p~~~~l~~~~~~~~~ 210 (291)
...+++..++.-+...+...+|. -.++..++-..+..+.+..+++.++.+..+.. .+..+.+.++-..+..
T Consensus 19 ~a~gs~~~~~~~~~wy~~L~kP~------w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~ 92 (161)
T COG3476 19 VALGSFFISSRDPNWYNNLKKPF------WLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNF 92 (161)
T ss_pred HHHHHHHhccccHHHHHhccCCC------CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Confidence 44455566666565666666652 12344454444444445555555555543311 2334444445556677
Q ss_pred cccCCCcCcccc-cchhhHHHHHHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 022848 211 IYSAPPLKLKQN-GWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264 (291)
Q Consensus 211 ~YS~pPlrlKr~-~~~g~l~~g~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~ 264 (291)
.|| |+-+|-+ +..|.+..+.. .+..+....+..+.+...-.+.+|+.+|.
T Consensus 93 aws--piff~l~~l~~a~i~~lll--~~~vl~l~i~~~~~s~~As~LLiPYllW~ 143 (161)
T COG3476 93 AWS--PIFFGLRSLGAALIIILLL--WIAVLVLTIIVWPISKTASLLLIPYLLWS 143 (161)
T ss_pred HHH--HHHHhhcCcchHHHHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 888 4556643 33344443322 23333334456677776666777888885
No 70
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=89.79 E-value=5.1 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHH
Q 022848 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV 175 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~ 175 (291)
...+...+||+-|+|.|+.+. +.-|..-|+ +.+..+...
T Consensus 173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~---~~a~~l~~~ 212 (283)
T TIGR01476 173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV---KRAAIVAVT 212 (283)
T ss_pred HHHHHHHHHhccchhhHHHcCCcCcceEEcH---HHHHHHHHH
Confidence 445567899999999999986 445655554 444443333
No 71
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.47 E-value=3.6 Score=38.59 Aligned_cols=44 Identities=7% Similarity=-0.090 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCCC-CccccccCHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLA 179 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p~R-Pi~sG~is~~~a~~~~~~l~~l 179 (291)
+........||+-|+|+|+.+.++. +. ++.++.+..+...+.+.
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l~~~ 229 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPWIVGL 229 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHHHHHH
Confidence 3456677899999999999997543 33 23345554444333333
No 72
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=88.81 E-value=5.9 Score=36.85 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.+.+..-..+|++.|+|.|++.. |.-|..-|.
T Consensus 172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 34455666788999999998876 777777775
No 73
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.24 E-value=4.1 Score=37.83 Aligned_cols=36 Identities=22% Similarity=-0.013 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccccC
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAIS 165 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is 165 (291)
..++.+.+-.++|++.|+|.|++.. +.-|+.-|.-+
T Consensus 174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~ 210 (290)
T PRK12870 174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYA 210 (290)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcccc
Confidence 3456788888999999999999887 66677666533
No 74
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=88.02 E-value=5.1 Score=37.31 Aligned_cols=35 Identities=23% Similarity=0.026 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 129 MSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 129 la~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
++.++-+.+-.++.++.|+|.|++.. +.-|+.=|.
T Consensus 166 ~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~ 201 (286)
T PRK12895 166 ISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence 34556777778999999999999987 666665554
No 75
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=87.37 E-value=6.1 Score=36.45 Aligned_cols=34 Identities=21% Similarity=-0.016 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
...+-+..-...|.+.|+|.|++.+ |.-|..-|.
T Consensus 170 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 170 ANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3455677777899999999999887 677776665
No 76
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=87.08 E-value=4 Score=38.49 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCC-CCccccccCHHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINEPY-RPIPSGAISENEVITQIWVLLLAG 180 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p~-RPi~sG~is~~~a~~~~~~l~~l~ 180 (291)
+........||+-|+|.|+.+.++ -|. ++.++.+..+...+.+++
T Consensus 200 ~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a 245 (317)
T PRK13387 200 FTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS 245 (317)
T ss_pred HHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence 456666899999999999999753 233 234455555444444433
No 77
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=87.05 E-value=6.4 Score=36.04 Aligned_cols=43 Identities=23% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHH
Q 022848 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLL 177 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~ 177 (291)
++...+-.++||+.|.|.|+.++ |.-|..-|. +.+..+...+.
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~---~~t~~~~~~~~ 210 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV---RKALYVAAAFL 210 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH---HHHHHHHHHHH
Confidence 34566778999999999999887 666665554 44444433333
No 78
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=86.89 E-value=7.5 Score=36.61 Aligned_cols=33 Identities=24% Similarity=0.031 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.++.+..-..++++.|+|.|+... |.-|..-|.
T Consensus 201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 445666777788999999999876 666776665
No 79
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=86.62 E-value=2.6 Score=38.74 Aligned_cols=32 Identities=25% Similarity=0.082 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
++.+.+-.++||+-|+|.|+.++ |.-|..-|.
T Consensus 164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 34555667789999999999876 666776663
No 80
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=86.61 E-value=6.4 Score=36.29 Aligned_cols=48 Identities=21% Similarity=0.084 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhhhchhhhhcCCC-CCCccccccCHHHHHHHHHHHHHHHHH
Q 022848 132 PCLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLG 182 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~p-~RPi~sG~is~~~a~~~~~~l~~l~l~ 182 (291)
.+........||+-|+|.|+.+.. .-|..=| ++.+..+...+.+++.+
T Consensus 178 ~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 178 GLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHHH
Confidence 345667778999999999999863 3344334 34444444444444443
No 81
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=86.42 E-value=3.9 Score=38.27 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCCcccc
Q 022848 128 IMSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (291)
Q Consensus 128 lla~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG 162 (291)
.++.++.+.+-.++|++-|+|.|++.. +.-|+.-|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 345566777888999999999998876 66676556
No 82
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.47 E-value=9.1 Score=35.52 Aligned_cols=46 Identities=7% Similarity=-0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCCC-CccccccCHHHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINEPYR-PIPSGAISENEVITQIWVLLLAGL 181 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p~R-Pi~sG~is~~~a~~~~~~l~~l~l 181 (291)
+........||.-|+|+|+.+.++. +. ++.++.+..+...+..++.
T Consensus 172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~y 218 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLSY 218 (285)
T ss_pred HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHHH
Confidence 4566778899999999999997532 33 3345555554444444333
No 83
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=85.41 E-value=4.6 Score=37.93 Aligned_cols=31 Identities=19% Similarity=0.014 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCCcccc
Q 022848 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG 162 (291)
.+...+..++||+-|+|.|+++. +.-|+.=|
T Consensus 192 ~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG 223 (308)
T PRK12887 192 LVFTFAIAIFKDIPDMEGDRQYQITTFTLRLG 223 (308)
T ss_pred HHHHHHHHHHHhccchhhHHHcCCcchhHHHh
Confidence 45666778899999999999987 44454344
No 84
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=83.72 E-value=16 Score=34.11 Aligned_cols=34 Identities=21% Similarity=0.019 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
+.++-+..-.++=.+.|+|.|++.. |.-|..-|.
T Consensus 178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 3455666666777888999999988 777887775
No 85
>PRK13592 ubiA prenyltransferase; Provisional
Probab=83.06 E-value=3.8 Score=38.43 Aligned_cols=31 Identities=26% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHc
Q 022848 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAM 282 (291)
Q Consensus 252 ~~~ll~l~~~l~~~~~~i~~d~~DiegDr~~ 282 (291)
+.++..+..++...+-.++||+.|+|-|+.+
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN 77 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRL 77 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc
Confidence 4444455566666778899999999999875
No 86
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=82.49 E-value=16 Score=33.72 Aligned_cols=34 Identities=21% Similarity=0.009 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCC-CCCCcccc
Q 022848 129 MSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (291)
Q Consensus 129 la~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG 162 (291)
++..+...+-.+++|+-|+|-|+++. +.-|..-|
T Consensus 174 ~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G 208 (289)
T COG0382 174 LAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFG 208 (289)
T ss_pred HHHHHHHHHHHHHHhccCccchHhcCCcchHHHhC
Confidence 34456777888999999999999987 44455444
No 87
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=81.10 E-value=36 Score=31.63 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.++-+..-.++-.+.|+|.|++.. |.-|..-|.
T Consensus 175 ~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~ 208 (289)
T PLN02809 175 GVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 208 (289)
T ss_pred HHHHHHHHHHHHHHhchhhHHhCCCcccchhhcH
Confidence 344454455677778999999987 777776665
No 88
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=80.49 E-value=20 Score=32.72 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
...+-...||+-|+|.|++.. +.-|..-|.
T Consensus 166 ~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 166 VNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 445666789999999999886 666776664
No 89
>PLN02922 prenyltransferase
Probab=80.05 E-value=12 Score=35.36 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 178 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~ 178 (291)
+........||+-|+|.|+.++++...+ ++.++.+..+...+..
T Consensus 199 ll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 199 LTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHHHHH
Confidence 4556778899999999999998643221 2334555444433333
No 90
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=79.79 E-value=38 Score=31.79 Aligned_cols=33 Identities=18% Similarity=0.035 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
..+..++-.++.++.|+|.|++.. +.-|..-|.
T Consensus 181 ~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 181 FGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 344455566788899999999887 666765564
No 91
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=79.58 E-value=18 Score=33.52 Aligned_cols=45 Identities=18% Similarity=0.009 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l 179 (291)
+........||.-|+|.|+.+.++... -++.++.+..+...+...
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~--v~lG~~~a~~l~~~l~~~ 219 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNTLA--VRLGDARTRMYHQGLLAV 219 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEeeh--hhcchHhHHHHHHHHHHH
Confidence 344667779999999999998754321 133445555544444333
No 92
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=79.49 E-value=6.1 Score=36.69 Aligned_cols=51 Identities=10% Similarity=-0.117 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhchhhhhcCCC-CCCccccccCHHHHHHHHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWVLLLAGLGLAGL 186 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p-~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~ 186 (291)
+...+...+||+-|.|.|+.+.. .=|. ++.++.+..++.++.+++.++...
T Consensus 171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 171 LWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999998864 3343 345577777776666666554443
No 93
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=78.43 E-value=24 Score=32.73 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
++.+..-...|.+.|+|.|+... |.-|+.-|.
T Consensus 177 ~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 177 FLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH
Confidence 34555556677789999997665 666776664
No 94
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=78.12 E-value=30 Score=31.77 Aligned_cols=30 Identities=20% Similarity=-0.073 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCCccccc
Q 022848 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.+..-...|++-|+|-|+... |.-|..-|.
T Consensus 171 w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~ 201 (279)
T PRK12869 171 WTPGHIWSLALKYREDYRRAGVPMLPAVVGE 201 (279)
T ss_pred HHHHHHHHHHHHhHHhHHHcCCeecceeecH
Confidence 344444456778888887665 666766653
No 95
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=76.56 E-value=32 Score=31.55 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=15.2
Q ss_pred hhhhchhhhhcCC-CCCCccccc
Q 022848 142 NDWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 142 Nd~~D~~~D~~n~-p~RPi~sG~ 163 (291)
+.+.|+|.|+.+. |.-|..-|.
T Consensus 178 ~a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 178 LALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHHhhhhHHHCCCccCCcccCH
Confidence 3467889997765 666766664
No 96
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=76.42 E-value=23 Score=32.84 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhchhhhhcCCC
Q 022848 133 CLTGYTQTINDWYDREIDAINEP 155 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~p 155 (291)
+........|++-|+|.|+.+.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~ 204 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGI 204 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCC
Confidence 34566778999999999999874
No 97
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=75.90 E-value=5.9 Score=37.04 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHc
Q 022848 258 LLYSIAGLGIAIVNDFKSVEGDRAM 282 (291)
Q Consensus 258 l~~~l~~~~~~i~~d~~DiegDr~~ 282 (291)
+..++...+....||+.|.|.|+++
T Consensus 53 l~~~l~~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 53 VLFCLASSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccC
Confidence 3344455677899999999999986
No 98
>PRK13595 ubiA prenyltransferase; Provisional
Probab=68.00 E-value=1.1e+02 Score=28.73 Aligned_cols=53 Identities=9% Similarity=-0.072 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 022848 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~ 188 (291)
+...+..++-++.|.|-|++.. +.-|..-| .+.+..++.++.+++.++-..++
T Consensus 180 ~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG---~r~a~~~a~~~~~~a~~~~~~~~ 233 (292)
T PRK13595 180 AWSVGKHAFDAAQDIPADRAAGTRTVATTLG---VRGTALYALAWFLLAGALLWPVS 233 (292)
T ss_pred HHHHHHHHHHhccChHhHHHcCCeechHHhC---cHhHHHHHHHHHHHHHHHHHHhc
Confidence 3446777888999999999987 44454444 46666666666666665555544
No 99
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=67.02 E-value=57 Score=25.92 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHHhhCC
Q 022848 196 PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT 248 (291)
Q Consensus 196 p~~~~l~~~~~~~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~ 248 (291)
+....+..++.+++=+|.. .+.|+++|+--...|..|..+.++..+...++
T Consensus 41 ~~~~~i~~ls~~~GG~~a~--~~~~~kG~l~G~~~Gl~y~~il~lis~~~~~~ 91 (116)
T PF12670_consen 41 WLVVIIYILSVFIGGFYAG--RKAGSKGWLHGLLVGLLYFLILLLISFLFGPG 91 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3344555666677778887 47888888766777888876666666544443
No 100
>PLN02878 homogentisate phytyltransferase
Probab=62.57 E-value=57 Score=30.35 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCCccccccCHHHHHHHHHH
Q 022848 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV 175 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-p~RPi~sG~is~~~a~~~~~~ 175 (291)
......++||+-|.|-|++.. +.-|+.-| ++.+..++..
T Consensus 168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~ 207 (280)
T PLN02878 168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVN 207 (280)
T ss_pred HHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHH
Confidence 344566999999999999987 55565444 3555544433
No 101
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=62.18 E-value=68 Score=28.70 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=28.1
Q ss_pred hhhcccCCCcCcccccchhhHHHHHHHhHHHHHHHHHhhCCC
Q 022848 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL 249 (291)
Q Consensus 208 ~~~~YS~pPlrlKr~~~~g~l~~g~~~g~lp~l~g~a~~g~~ 249 (291)
.-..||. ..+|++.+ .++++|...|.+.-..|+...|.+
T Consensus 141 ~~v~~sR--Vyl~yHt~-sQVv~G~ivG~l~g~~Wf~~v~sl 179 (228)
T KOG3146|consen 141 FYVCYSR--VYLKYHTL-SQVVVGAIVGGLVGILWFYLVNSL 179 (228)
T ss_pred HHHHHHH--HHHHhccH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3457775 57899987 799999877776666666666654
No 102
>PRK08238 hypothetical protein; Validated
Probab=61.76 E-value=11 Score=37.64 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHcC
Q 022848 257 TLLYSIAGLGIAIVNDFKSVEGDRAMG 283 (291)
Q Consensus 257 ~l~~~l~~~~~~i~~d~~DiegDr~~G 283 (291)
++..++...+..++||+-|.|.||++-
T Consensus 232 f~~~~l~~sa~~~~ND~~D~e~Dr~~~ 258 (479)
T PRK08238 232 FLAFSLCASAVYILNDLLDLEADRAHP 258 (479)
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccCC
Confidence 334445667889999999999999973
No 103
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=58.46 E-value=21 Score=31.50 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=25.5
Q ss_pred hCCCCHHHHHH-HHHHHHHHHHHHHHhhcCChHHHHHc
Q 022848 246 FGTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAM 282 (291)
Q Consensus 246 ~g~~~~~~~ll-~l~~~l~~~~~~i~~d~~DiegDr~~ 282 (291)
.+..++..... .+..++........||+.|.|.|+.+
T Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 17 GGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCccc
Confidence 34556544333 33444666788899999999999985
No 104
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=57.38 E-value=1.4e+02 Score=29.17 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhhchhh
Q 022848 133 CLTGYTQTINDWYDREI 149 (291)
Q Consensus 133 l~~~a~~~iNd~~D~~~ 149 (291)
++...-..+|++++.++
T Consensus 116 ~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 116 LLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 45556678899887654
No 105
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=53.06 E-value=1.9e+02 Score=27.02 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=11.4
Q ss_pred hhhchhhhhcCC-CCCCccccc
Q 022848 143 DWYDREIDAINE-PYRPIPSGA 163 (291)
Q Consensus 143 d~~D~~~D~~n~-p~RPi~sG~ 163 (291)
.+.|+|.|+... |.-|...|.
T Consensus 191 ai~~~~Dy~~aG~~~lpv~~G~ 212 (306)
T PRK13362 191 AIFRFNDYAAAGIPVLPVARGI 212 (306)
T ss_pred HHHhHhhHHHCCCeeeceecCh
Confidence 344454444443 666776664
No 106
>PLN02776 prenyltransferase
Probab=46.85 E-value=2.7e+02 Score=26.68 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=18.9
Q ss_pred hhchhhhhcCC-CCCCcccc--ccCHHHHHHHHHHHHHHHHH
Q 022848 144 WYDREIDAINE-PYRPIPSG--AISENEVITQIWVLLLAGLG 182 (291)
Q Consensus 144 ~~D~~~D~~n~-p~RPi~sG--~is~~~a~~~~~~l~~l~l~ 182 (291)
|.|+|.|+.-. |.-|.+.+ +-+..+.......+..++++
T Consensus 173 ~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll 214 (341)
T PLN02776 173 YMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFL 214 (341)
T ss_pred HHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34455333333 66677664 44444444444444444443
No 107
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=45.97 E-value=41 Score=29.44 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcCChHHHH----------HcCCccceee
Q 022848 261 SIAGLGIAIVNDFKSVEGDR----------AMGLQVSSIL 290 (291)
Q Consensus 261 ~l~~~~~~i~~d~~DiegDr----------~~G~rTlpV~ 290 (291)
--++.++.+.||++|+.+|. +.|+.|+|+.
T Consensus 156 ~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~ 195 (236)
T cd00867 156 RALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVI 195 (236)
T ss_pred HHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHH
Confidence 34567889999999998887 8999999863
No 108
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=43.89 E-value=99 Score=25.04 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=25.8
Q ss_pred hhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022848 149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWA 191 (291)
Q Consensus 149 ~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~ 191 (291)
-|+.|+ .|.+-+-+|..|....+.+..++++.+++.+.+.+
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~ 48 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLT 48 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466764 23444446888887777766667776666655544
No 109
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=36.14 E-value=1.1e+02 Score=26.40 Aligned_cols=57 Identities=12% Similarity=-0.041 Sum_probs=25.8
Q ss_pred CccccccCHHH--HHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHhhhcccC
Q 022848 158 PIPSGAISENE--VITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSA 214 (291)
Q Consensus 158 Pi~sG~is~~~--a~~~~~~l~~l~l~l~~~l~~~~g~~~p~~~~l~~~~~~~~~~YS~ 214 (291)
....|.+.+.. |..+.+...+....+++.+....-..+|+.+.+.+++=+.+++|-.
T Consensus 70 itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlAG~~Yw~ 128 (173)
T PF12046_consen 70 ITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLAGIFYWQ 128 (173)
T ss_pred EEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhhhhhhhh
Confidence 33566665543 3332222222222233333333222344455555566667777763
No 110
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.89 E-value=1.4e+02 Score=23.87 Aligned_cols=15 Identities=53% Similarity=0.866 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhC
Q 022848 178 LAGLGLAGLLDVWAG 192 (291)
Q Consensus 178 ~l~l~l~~~l~~~~g 192 (291)
++|+++++++.-.++
T Consensus 57 lVGa~iG~llD~~ag 71 (116)
T COG5336 57 LVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHhcC
Confidence 445555555554443
No 111
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.87 E-value=2.3e+02 Score=22.65 Aligned_cols=41 Identities=32% Similarity=0.324 Sum_probs=25.9
Q ss_pred hhhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022848 149 IDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWA 191 (291)
Q Consensus 149 ~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~ 191 (291)
-|+.|+ .|.+-+-+|..|....+.+....++.+++.+.+.+
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~ 45 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLA 45 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466664 23444557888888877777777777666554433
No 112
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=30.47 E-value=4.9e+02 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHHhhh-cccCCCcCcccccchh---hHHHHHHHhH
Q 022848 204 GGSLLSY-IYSAPPLKLKQNGWIG---NFALGASYIS 236 (291)
Q Consensus 204 ~~~~~~~-~YS~pPlrlKr~~~~g---~l~~g~~~g~ 236 (291)
.+..+++ .||.+|.+-|.+-+.| ...+|+..+.
T Consensus 193 ~ga~lgFL~fN~~~~~~pAkIFMGD~GS~~LGf~la~ 229 (365)
T PRK15119 193 IAAILPYILLNLGILGRRYKVFMGDAGSTLIGFTVIW 229 (365)
T ss_pred HHHHHHHHHHHcCCCCCCCeEeccchhHHHHHHHHHH
Confidence 3444444 7887543223333444 4555554433
No 113
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=28.67 E-value=1e+02 Score=28.94 Aligned_cols=46 Identities=11% Similarity=-0.117 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHH
Q 022848 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l 179 (291)
.=++|.++-+.+|+.|-+.-| +.+|-+........++..+-.++..
T Consensus 72 iEliH~asLiHDDI~D~s~~R---Rg~pt~~~~~G~~~Ail~GD~L~~~ 117 (319)
T TIGR02748 72 LELIHMASLVHDDVIDDADLR---RGRPTIKSKWGNRIAMYTGDYLFAK 117 (319)
T ss_pred HHHHHHHHHHhccccCCCCCC---CCCcCHHHHhChHHHHHHHHHHHHH
Confidence 457899999999997765433 3455555555566666655444433
No 114
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=28.65 E-value=1.8e+02 Score=22.32 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=16.0
Q ss_pred hhcCCCCCCccccccCHHHHHHHHHHHHHHHHHHH
Q 022848 150 DAINEPYRPIPSGAISENEVITQIWVLLLAGLGLA 184 (291)
Q Consensus 150 D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l~l~ 184 (291)
+++|+|.|-+ -.+..|+ ..+...+.+|+..+
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSG 37 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHh
Confidence 5566665544 5677887 33333333444333
No 115
>PRK10692 hypothetical protein; Provisional
Probab=25.27 E-value=2.8e+02 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=13.2
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhC
Q 022848 224 WIGNFALGASYISLPWWAGQALFG 247 (291)
Q Consensus 224 ~~g~l~~g~~~g~lp~l~g~a~~g 247 (291)
.+||+.+|+....+....+|.+..
T Consensus 8 ~~GN~lMglGmv~Mv~gigysi~~ 31 (92)
T PRK10692 8 LLGNVLMGLGLVVMVVGVGYSILN 31 (92)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 457777776654444444454443
No 116
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=23.48 E-value=3.2e+02 Score=25.56 Aligned_cols=78 Identities=18% Similarity=0.016 Sum_probs=45.1
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCC-CCC
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP-YRP 158 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~--n~p-~RP 158 (291)
....+|++..+-++-...-.+..+|..+++.-+-. ...+ .-+ +-.+-.+.++.||+.|+..|.. .|| ..-
T Consensus 157 ~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~-~~~l-~~~-----g~~lG~aFQI~DDilD~~~~~~~~GK~~~~D 229 (319)
T TIGR02748 157 QNLRTYLRRIKRKTALLIAASCQLGAIASGANEAI-VKKL-YWF-----GYYVGMSYQITDDILDFVGTEEELGKPAGGD 229 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHH-HHH-----HHHHHHHHHHHHHHHHccCCHHhhCCChhhH
Confidence 46788999998887766666667788877653211 0100 111 1223346678999999976533 333 223
Q ss_pred ccccccCH
Q 022848 159 IPSGAISE 166 (291)
Q Consensus 159 i~sG~is~ 166 (291)
+..|..|.
T Consensus 230 l~~gk~Tl 237 (319)
T TIGR02748 230 LLQGNVTL 237 (319)
T ss_pred HhCCCchH
Confidence 44555443
No 117
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.27 E-value=2.9e+02 Score=21.11 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=13.1
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhC
Q 022848 224 WIGNFALGASYISLPWWAGQALFG 247 (291)
Q Consensus 224 ~~g~l~~g~~~g~lp~l~g~a~~g 247 (291)
.+||+.+|+....+....+|.+..
T Consensus 8 ~~GN~lMglGmv~Mv~gigysi~~ 31 (89)
T PF10762_consen 8 LLGNVLMGLGMVVMVGGIGYSILS 31 (89)
T ss_pred HHhhHHHHHhHHHHHHhHHHHHHH
Confidence 457777776554444434454443
No 118
>CHL00151 preA prenyl transferase; Reviewed
Probab=22.86 E-value=1.2e+02 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCChHH-----------HHHcCCccceee
Q 022848 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQVSSIL 290 (291)
Q Consensus 261 ~l~~~~~~i~~d~~Dieg-----------Dr~~G~rTlpV~ 290 (291)
--+++++.+.+|+.|+.+ |.+.|+.|+|+.
T Consensus 205 ~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l 245 (323)
T CHL00151 205 KHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVL 245 (323)
T ss_pred HHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHH
Confidence 346678899999998654 678889999864
No 119
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=22.66 E-value=76 Score=23.13 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCC
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINE 154 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~ 154 (291)
+++++...++..|=||-+++|+.+.
T Consensus 40 ~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 40 GGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 4566777899999999999998653
No 120
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=22.40 E-value=1.4e+02 Score=26.99 Aligned_cols=48 Identities=13% Similarity=-0.023 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHHH
Q 022848 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGL 181 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~l 181 (291)
.=++|.++-+.+|+.|-+. .++.+|-.........++..+-.++..++
T Consensus 42 vEliH~asLIhDDI~D~s~---~RRG~pt~~~~~G~~~Ail~gd~ll~~a~ 89 (260)
T PF00348_consen 42 VELIHAASLIHDDIIDNSD---LRRGKPTVHKKFGNAIAILAGDYLLALAF 89 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCS---EETTEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcccc---cCCCCccccccccccchhhhchHHHHHHH
Confidence 4578999999999966543 22344533334445556665544444444
No 121
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=22.14 E-value=5.4e+02 Score=22.52 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=17.6
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHH
Q 022848 160 PSGAISENEVITQIWVLLLAGLGLAG 185 (291)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~ 185 (291)
.+|.++.++++.+++++.+=++..++
T Consensus 122 ~s~~i~~~e~l~L~iAlSiDalavG~ 147 (206)
T TIGR02840 122 KSGNISGKEALLLGIALSLDAFGAGI 147 (206)
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 46679999998877777654444443
No 122
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=22.08 E-value=5.7e+02 Score=22.81 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhcCChH-----------HHHHcCCccceee
Q 022848 259 LYSIAGLGIAIVNDFKSVE-----------GDRAMGLQVSSIL 290 (291)
Q Consensus 259 ~~~l~~~~~~i~~d~~Die-----------gDr~~G~rTlpV~ 290 (291)
+...++.++.+.+|+.|+. +|.+.|+.|+|+.
T Consensus 177 ~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~ 219 (259)
T cd00685 177 FGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVL 219 (259)
T ss_pred HHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHH
Confidence 3345667788999998864 5777899998864
No 123
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=20.82 E-value=2.2e+02 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhcCChH-----------HHHHcCCccceee
Q 022848 259 LYSIAGLGIAIVNDFKSVE-----------GDRAMGLQVSSIL 290 (291)
Q Consensus 259 ~~~l~~~~~~i~~d~~Die-----------gDr~~G~rTlpV~ 290 (291)
+.-.+++++.+.+|+.|+. +|.+.|+.|+|+.
T Consensus 202 ~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l 244 (322)
T TIGR02749 202 YGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVL 244 (322)
T ss_pred HHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHH
Confidence 3345677889999999864 5778899999874
No 124
>PLN02890 geranyl diphosphate synthase
Probab=20.38 E-value=4.2e+02 Score=26.13 Aligned_cols=79 Identities=20% Similarity=0.016 Sum_probs=46.2
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CC-CC
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EP-YR 157 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n--~p-~R 157 (291)
......|++..+=++-.+.-.+.-+|..++|...- ....+. - .|..+-.+.++.+|+.|+..|... || ..
T Consensus 254 ~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~----~~~~l~--~-fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~ 326 (422)
T PLN02890 254 RRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAE----VAVLAF--E-YGRNLGLAFQLIDDVLDFTGTSASLGKGSLS 326 (422)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHH----HHHHHH--H-HHHHHHHHHHHHHHHHhhcCChhhhCCCchh
Confidence 35677888888777776655566677777765331 111111 1 122344567789999999877443 33 22
Q ss_pred CccccccCH
Q 022848 158 PIPSGAISE 166 (291)
Q Consensus 158 Pi~sG~is~ 166 (291)
-+-.|.+|.
T Consensus 327 DL~eGk~Tl 335 (422)
T PLN02890 327 DIRHGVITA 335 (422)
T ss_pred hHhcCCccH
Confidence 344566554
No 125
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=20.20 E-value=1.7e+02 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC
Q 022848 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (291)
Q Consensus 121 ~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n 153 (291)
+.++..+.++..+...+...-|..+|...|++.
T Consensus 57 ~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 57 VLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 444555555566677888899999998877653
Done!