Query 022848
Match_columns 291
No_of_seqs 204 out of 1458
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 21.0 88 0.003 27.9 4.2 53 238-290 189-253 (304)
2 1wy0_A Geranylgeranyl pyrophos 20.8 1E+02 0.0035 27.8 4.8 32 259-290 206-248 (342)
3 3oyr_A Trans-isoprenyl diphosp 20.5 1.2E+02 0.0042 27.5 5.2 58 232-289 193-261 (345)
4 3rmg_A Octaprenyl-diphosphate 19.5 1.3E+02 0.0045 27.1 5.2 32 259-290 202-243 (334)
5 3apz_A Geranyl diphosphate syn 19.0 1.1E+02 0.0038 27.6 4.6 48 130-180 95-142 (348)
6 3pko_A Geranylgeranyl pyrophos 19.0 98 0.0033 28.0 4.1 59 232-290 185-254 (334)
7 3mzv_A Decaprenyl diphosphate 18.8 1.1E+02 0.0038 27.7 4.5 45 131-178 82-126 (341)
8 3m0g_A Farnesyl diphosphate sy 18.7 1.4E+02 0.0047 26.5 5.0 35 256-290 201-246 (297)
9 3lk5_A Geranylgeranyl pyrophos 18.3 1.2E+02 0.0041 27.9 4.7 53 237-290 223-287 (380)
10 1wy0_A Geranylgeranyl pyrophos 18.3 1.6E+02 0.0055 26.5 5.5 79 81-166 164-245 (342)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=20.97 E-value=88 Score=27.94 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHHHhhcCChHH-----------HHHcCCccceee
Q 022848 238 PWWAGQALFGTLTPDII-VLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQVSSIL 290 (291)
Q Consensus 238 p~l~g~a~~g~~~~~~~-ll~l~~~l~~~~~~i~~d~~Dieg-----------Dr~~G~rTlpV~ 290 (291)
+.-.|..+.|.-+.... .+.-+.-.+++++.+.+|+.|+.+ |.+.|+.|+|+.
T Consensus 189 ~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l 253 (304)
T 3lsn_A 189 SVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPAL 253 (304)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHH
Confidence 33344444454243221 233344456778999999999866 566788888864
No 2
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=20.84 E-value=1e+02 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhcCChH-----------HHHHcCCccceee
Q 022848 259 LYSIAGLGIAIVNDFKSVE-----------GDRAMGLQVSSIL 290 (291)
Q Consensus 259 ~~~l~~~~~~i~~d~~Die-----------gDr~~G~rTlpV~ 290 (291)
+.-.++.++.+.+|+.|+. .|.+.|+.|+|+.
T Consensus 206 ~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i 248 (342)
T 1wy0_A 206 WGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVA 248 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHH
Confidence 3445667889999998875 4667789999874
No 3
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=20.48 E-value=1.2e+02 Score=27.47 Aligned_cols=58 Identities=19% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHH-----------HHHcCCcccee
Q 022848 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQVSSI 289 (291)
Q Consensus 232 ~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~Dieg-----------Dr~~G~rTlpV 289 (291)
......+.-.|....|.-+-..-.+.-+.-.+++++.+.+|+.|+.+ |.+.|+.|+|+
T Consensus 193 a~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~ 261 (345)
T 3oyr_A 193 AELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPL 261 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHH
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=19.51 E-value=1.3e+02 Score=27.05 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCChH----------HHHHcCCccceee
Q 022848 259 LYSIAGLGIAIVNDFKSVE----------GDRAMGLQVSSIL 290 (291)
Q Consensus 259 ~~~l~~~~~~i~~d~~Die----------gDr~~G~rTlpV~ 290 (291)
+.-.++.++.+.+|+.|+. .|.+.|+.|+|+.
T Consensus 202 ~g~~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i 243 (334)
T 3rmg_A 202 LGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPAL 243 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHH
Confidence 3344667888999988864 6888999999974
No 5
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=19.01 E-value=1.1e+02 Score=27.62 Aligned_cols=48 Identities=8% Similarity=-0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHH
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~ 180 (291)
+.=++|.++-+.+|+.|-+.-| +.+|-.........++..+-.++..+
T Consensus 95 avEliH~asLiHDDi~D~s~~R---RG~pt~h~~~G~~~AIl~GD~L~~~a 142 (348)
T 3apz_A 95 ITEMIHVASLLHDDVLDDADTR---RGVGSLNVVMGNKMSVLAGDFLLSRA 142 (348)
T ss_dssp HHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCC---CCCCcHHHHhCchHHHHHHHHHHHHH
Confidence 3457899999999997755433 34444445556677766555444433
No 6
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=18.99 E-value=98 Score=27.96 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhhcCChHH-----------HHHcCCccceee
Q 022848 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQVSSIL 290 (291)
Q Consensus 232 ~~~g~lp~l~g~a~~g~~~~~~~ll~l~~~l~~~~~~i~~d~~Dieg-----------Dr~~G~rTlpV~ 290 (291)
......+.-.|....|.-+-..-.+.-+.-.++.++.+.+|+.|+.+ |.+.|+.|+|+.
T Consensus 185 a~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i 254 (334)
T 3pko_A 185 AELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLL 254 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHH
No 7
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=18.79 E-value=1.1e+02 Score=27.70 Aligned_cols=45 Identities=13% Similarity=-0.029 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHH
Q 022848 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 178 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~ 178 (291)
.=++|.++-+.+|+.|-+.= ++.+|-.........++..+-.++.
T Consensus 82 iEliH~asLiHDDI~D~s~~---RRG~pt~h~~~G~~~AIl~GD~L~~ 126 (341)
T 3mzv_A 82 VEFIHTATLLHDDVVDESRQ---RRGRPTANLLWDNKSSVLVGDYLFA 126 (341)
T ss_dssp HHHHHHHHHHHHHC---------CTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccCCCCC---cCCCccHHHhcChHHHHHHHHHHHH
Confidence 34689999999999765542 2344544444555666655544433
No 8
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=18.73 E-value=1.4e+02 Score=26.54 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChHH-----------HHHcCCccceee
Q 022848 256 LTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQVSSIL 290 (291)
Q Consensus 256 l~l~~~l~~~~~~i~~d~~Dieg-----------Dr~~G~rTlpV~ 290 (291)
+.-+.-.+++++.+.+|+.|+.+ |.+.|+.|+|+.
T Consensus 201 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l 246 (297)
T 3m0g_A 201 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSL 246 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHH
Confidence 33344456778999999999865 567788898864
No 9
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=18.32 E-value=1.2e+02 Score=27.93 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCHHH-HHHHHHHHHHHHHHHHHhhcCChHH-----------HHHcCCccceee
Q 022848 237 LPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQVSSIL 290 (291)
Q Consensus 237 lp~l~g~a~~g~~~~~~-~ll~l~~~l~~~~~~i~~d~~Dieg-----------Dr~~G~rTlpV~ 290 (291)
.|.-.|..+.|. +... -.+.-+.-.++.++.+.+|+.|+.+ |.+.|+.|+|+.
T Consensus 223 ~~~~~Ga~laga-~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i 287 (380)
T 3lk5_A 223 RPLHLGASIAGG-SPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLA 287 (380)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHH
Confidence 344444444443 3222 1233334456678889999988754 677899999874
No 10
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=18.30 E-value=1.6e+02 Score=26.45 Aligned_cols=79 Identities=15% Similarity=-0.052 Sum_probs=48.0
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCC-CC
Q 022848 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP-YR 157 (291)
Q Consensus 81 ~~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~--n~p-~R 157 (291)
..+...|++..+-++-.....++-+|+.++|...-. .. ...-++ ..+-.+.++.|||.|+.-|.. .|| ..
T Consensus 164 ~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~-~~-~l~~~g-----~~lG~aFQI~DD~lD~~~d~~~~GK~~g~ 236 (342)
T 1wy0_A 164 TVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEY-IK-ALSSWG-----RNVGIAFQIWDDVLDLIADEKKLGKPVGS 236 (342)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHH-HH-HHHHHH-----HHHHHHHHHHHHHHHHHSCHHHHTSCSCH
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHH-HH-HHHHHH-----HHHHHHHHHHHHHHhccCChhhhCCCchh
Confidence 357889999999888777777888898888753211 01 011122 223446778999999976643 332 22
Q ss_pred CccccccCH
Q 022848 158 PIPSGAISE 166 (291)
Q Consensus 158 Pi~sG~is~ 166 (291)
-+-.|..|.
T Consensus 237 Dl~egK~Tl 245 (342)
T 1wy0_A 237 DIRKGKKTL 245 (342)
T ss_dssp HHHHTCCCH
T ss_pred HHhCCCCcH
Confidence 334455554
Done!