Query 022848
Match_columns 291
No_of_seqs 204 out of 1458
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022848.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022848hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 60.5 16 0.0011 30.2 8.5 50 130-180 69-118 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 35.9 53 0.0039 26.8 7.9 50 130-180 72-121 (299)
3 d1fpsa_ a.128.1.1 (A:) Farnesy 21.0 33 0.0024 28.9 3.7 54 237-290 203-267 (348)
4 d1v4ea_ a.128.1.1 (A:) Octopre 12.1 3.2E+02 0.023 21.4 8.2 76 82-167 146-223 (280)
5 d2q80a1 a.128.1.1 (A:6-296) Ge 11.8 29 0.0021 28.4 0.7 47 131-180 48-94 (291)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.5 1.9E+02 0.014 22.9 5.6 37 204-242 37-74 (248)
7 d1iwga8 f.35.1.1 (A:513-566,A: 9.4 3.6E+02 0.026 20.3 7.6 17 131-147 122-138 (222)
8 d1diha2 d.81.1.3 (A:131-240) D 9.3 1.1E+02 0.008 21.1 3.1 29 134-162 10-39 (110)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 8.9 3.5E+02 0.025 21.2 6.9 14 166-179 88-101 (447)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 8.4 1.9E+02 0.014 21.6 4.6 12 134-145 107-118 (199)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=60.49 E-value=16 Score=30.23 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHH
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~ 180 (291)
+.=++|.++-+.+|+.|.|.|.. ++.+|-.........++..+-.++..+
T Consensus 69 avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a 118 (290)
T d1rtra_ 69 ALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKA 118 (290)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHH
Confidence 34578999999999988877654 234455555555666666554444333
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=35.93 E-value=53 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHH
Q 022848 130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (291)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~ 180 (291)
+.=++|.++-+.+|+.|.|.|..- +.+|-.........|+..+-.++..+
T Consensus 72 aiEllH~asLiHDDI~d~d~~~~R-RG~pt~h~~~G~~~AIl~Gd~l~~~a 121 (299)
T d1rqja_ 72 AVECIHAYSLIHDDLPAMDDDDLR-RGLPTCHVKFGEANAILAGDALQTLA 121 (299)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCCEE-TTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchhhhhhhcc-cccccceeeeCcchhhhhcchHHHHH
Confidence 445799999999999988765332 33343334455566666554444333
No 3
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.98 E-value=33 Score=28.87 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCCHHHH-HHHHHHHHHHHHHHHHhhcCChHH----------HHHcCCccceee
Q 022848 237 LPWWAGQALFGTLTPDII-VLTLLYSIAGLGIAIVNDFKSVEG----------DRAMGLQVSSIL 290 (291)
Q Consensus 237 lp~l~g~a~~g~~~~~~~-ll~l~~~l~~~~~~i~~d~~Dieg----------Dr~~G~rTlpV~ 290 (291)
.|...+.++.|.-+.... .+.-+..-++.++.+.+|+.|+.+ |.+.|+.|+|+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii 267 (348)
T d1fpsa_ 203 LPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVV 267 (348)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHH
T ss_pred HHHHHHHHhhhhccccchhhccccccccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHH
Confidence 344344444444443322 233334456778899999988764 777789999864
No 4
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=12.14 E-value=3.2e+02 Score=21.43 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=48.0
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC-CC-CCCc
Q 022848 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN-EP-YRPI 159 (291)
Q Consensus 82 ~~l~~~l~l~RP~~~~~~~~~~~~G~~~ag~~~~~~~~~~~~ll~~lla~~l~~~a~~~iNd~~D~~~D~~n-~p-~RPi 159 (291)
.+..+|+++.+-++-.....+..+|..++|... ..+ . -++.- +-.+.++.||+.|+.-|... +| ..-+
T Consensus 146 ~t~~~y~~~i~~KT~~lf~~~~~~ga~l~g~~~---~~l-~-~~g~~-----lG~afQi~DD~ld~~~~~~~GK~~g~Dl 215 (280)
T d1v4ea_ 146 ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDL-Y-NLGVT-----IGTIYQMFDDIMDFAGMEKIGKDGFLDL 215 (280)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHH-H-HHHHH-----HHHHHHHHHHHHHHTTCCSCCTTSSCCC
T ss_pred CCHHHHHHHHHhccccHHHHHHHHHHHHccccH---HHH-H-HHHHH-----HHHHHHHHHhhccccchhhhcccchhhH
Confidence 467889999988887777777788888777543 121 1 11221 23456779999998755433 22 3456
Q ss_pred cccccCHH
Q 022848 160 PSGAISEN 167 (291)
Q Consensus 160 ~sG~is~~ 167 (291)
-.|+.|..
T Consensus 216 ~~gK~T~p 223 (280)
T d1v4ea_ 216 KNGVASFP 223 (280)
T ss_dssp TTTTCCHH
T ss_pred hCCCccHH
Confidence 67776643
No 5
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.83 E-value=29 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCCCCCCccccccCHHHHHHHHHHHHHHH
Q 022848 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~n~p~RPi~sG~is~~~a~~~~~~l~~l~ 180 (291)
.=++|.++-+.+|+.|-+.=| +.+|-.........++..+-.++..+
T Consensus 48 iEllH~asLihDDi~D~~~~R---Rg~pt~~~~~G~~~Ail~gd~l~~~a 94 (291)
T d2q80a1 48 TEMLHNASLLIDDIEDNSKLR---RGFPVAHSIYGIPSVINSANYVYFLG 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHTCSEE---TTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcccc---cCCCccccccchhhhhhHHHHHHHHH
Confidence 457899999999997765433 33444444556666666665555444
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.51 E-value=1.9e+02 Score=22.92 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=16.2
Q ss_pred HHHHhhhcccCCC-cCcccccchhhHHHHHHHhHHHHHHH
Q 022848 204 GGSLLSYIYSAPP-LKLKQNGWIGNFALGASYISLPWWAG 242 (291)
Q Consensus 204 ~~~~~~~~YS~pP-lrlKr~~~~g~l~~g~~~g~lp~l~g 242 (291)
+.+++.|+|-.+- +.+|+... |-+.+ +.+-..|++..
T Consensus 37 ~~~~~~~vy~s~r~~p~kyi~P-G~~~l-~~Fvi~Pi~yT 74 (248)
T d2r6gf1 37 LSSAGLYIFANRKAYAWRYVYP-GMAGM-GLFVLFPLVCT 74 (248)
T ss_dssp HHHHHHHHHSSSCCTTHHHHHH-HHHHH-HHHTHHHHHHH
T ss_pred HHHheEEEEEccCccceehhhh-HHHHH-HHHHHHhheeE
Confidence 3345567777531 11222211 33333 34555676543
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.41 E-value=3.6e+02 Score=20.25 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhhhch
Q 022848 131 GPCLTGYTQTINDWYDR 147 (291)
Q Consensus 131 ~~l~~~a~~~iNd~~D~ 147 (291)
+.....+...++++.+.
T Consensus 122 Gi~v~~~i~~~~~~~~~ 138 (222)
T d1iwga8 122 GLSAKNAILIVEFAKDL 138 (222)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhccc
Confidence 44455555555555443
No 8
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=9.34 E-value=1.1e+02 Score=21.10 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhchh-hhhcCCCCCCcccc
Q 022848 134 LTGYTQTINDWYDRE-IDAINEPYRPIPSG 162 (291)
Q Consensus 134 ~~~a~~~iNd~~D~~-~D~~n~p~RPi~sG 162 (291)
..-++-.+|+++|.+ +|..++.+.--|||
T Consensus 10 ~~~~a~~l~~~~dieI~E~HH~~K~DaPSG 39 (110)
T d1diha2 10 LEKAAKVMGDYTDIEIIEAHHRHKVDAPSG 39 (110)
T ss_dssp HHHHHHHHTTTSEEEEEEEECTTCCSSSCH
T ss_pred HHHHHHhcccccChhhHHHHHhcCCCCCch
Confidence 445566788889998 56776666666787
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.87 E-value=3.5e+02 Score=21.15 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 022848 166 ENEVITQIWVLLLA 179 (291)
Q Consensus 166 ~~~a~~~~~~l~~l 179 (291)
+|..+..+.++..+
T Consensus 88 ~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 88 PRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 34444444443333
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.42 E-value=1.9e+02 Score=21.58 Aligned_cols=12 Identities=0% Similarity=-0.039 Sum_probs=4.9
Q ss_pred HHHHHHHhhhhh
Q 022848 134 LTGYTQTINDWY 145 (291)
Q Consensus 134 ~~~a~~~iNd~~ 145 (291)
+..+..++.++.
T Consensus 107 vd~~i~i~~~~~ 118 (199)
T d1iwga7 107 VDDAIVVVENVE 118 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 333344444433
Done!